Multiple sequence alignment - TraesCS6B01G008500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6B01G008500 | chr6B | 100.000 | 2798 | 0 | 0 | 1 | 2798 | 5556202 | 5553405 | 0.000000e+00 | 5168.0 |
1 | TraesCS6B01G008500 | chr6B | 98.132 | 1499 | 25 | 2 | 545 | 2040 | 5072716 | 5071218 | 0.000000e+00 | 2610.0 |
2 | TraesCS6B01G008500 | chr6B | 92.380 | 1798 | 133 | 4 | 242 | 2036 | 2809403 | 2807607 | 0.000000e+00 | 2558.0 |
3 | TraesCS6B01G008500 | chr6B | 96.200 | 1421 | 51 | 2 | 545 | 1965 | 2803080 | 2801663 | 0.000000e+00 | 2322.0 |
4 | TraesCS6B01G008500 | chr6B | 92.450 | 1563 | 118 | 0 | 545 | 2107 | 8889526 | 8887964 | 0.000000e+00 | 2233.0 |
5 | TraesCS6B01G008500 | chr6B | 88.314 | 676 | 52 | 8 | 1331 | 2006 | 5077625 | 5076977 | 0.000000e+00 | 785.0 |
6 | TraesCS6B01G008500 | chr6B | 85.118 | 551 | 62 | 8 | 1 | 532 | 365739618 | 365739069 | 1.900000e-151 | 545.0 |
7 | TraesCS6B01G008500 | chr6B | 87.762 | 286 | 22 | 7 | 2524 | 2798 | 2799846 | 2799563 | 3.480000e-84 | 322.0 |
8 | TraesCS6B01G008500 | chr6B | 87.967 | 241 | 21 | 7 | 2288 | 2521 | 5071192 | 5070953 | 7.630000e-71 | 278.0 |
9 | TraesCS6B01G008500 | chr6B | 85.957 | 235 | 24 | 5 | 2524 | 2751 | 5070989 | 5070757 | 2.780000e-60 | 243.0 |
10 | TraesCS6B01G008500 | chr6B | 92.357 | 157 | 11 | 1 | 2133 | 2288 | 490332863 | 490332707 | 3.630000e-54 | 222.0 |
11 | TraesCS6B01G008500 | chr6B | 90.506 | 158 | 15 | 0 | 1 | 158 | 2809584 | 2809427 | 2.820000e-50 | 209.0 |
12 | TraesCS6B01G008500 | chr6D | 91.587 | 1569 | 104 | 9 | 545 | 2107 | 1373069 | 1374615 | 0.000000e+00 | 2141.0 |
13 | TraesCS6B01G008500 | chr6D | 78.596 | 570 | 67 | 30 | 6 | 547 | 302632935 | 302632393 | 2.690000e-85 | 326.0 |
14 | TraesCS6B01G008500 | chr6D | 86.559 | 186 | 18 | 4 | 2108 | 2287 | 419592584 | 419592768 | 6.110000e-47 | 198.0 |
15 | TraesCS6B01G008500 | chr3A | 92.226 | 1505 | 111 | 2 | 545 | 2049 | 731787474 | 731785976 | 0.000000e+00 | 2126.0 |
16 | TraesCS6B01G008500 | chr3A | 93.548 | 93 | 4 | 2 | 2429 | 2521 | 51753232 | 51753322 | 1.350000e-28 | 137.0 |
17 | TraesCS6B01G008500 | chr7B | 74.979 | 1195 | 255 | 27 | 626 | 1789 | 680854463 | 680853282 | 6.910000e-141 | 510.0 |
18 | TraesCS6B01G008500 | chr7B | 75.869 | 489 | 78 | 30 | 21 | 499 | 89954492 | 89954034 | 2.180000e-51 | 213.0 |
19 | TraesCS6B01G008500 | chr1B | 82.740 | 562 | 68 | 12 | 6 | 548 | 296550823 | 296550272 | 9.070000e-130 | 473.0 |
20 | TraesCS6B01G008500 | chr1B | 89.444 | 180 | 19 | 0 | 2108 | 2287 | 54700569 | 54700748 | 7.800000e-56 | 228.0 |
21 | TraesCS6B01G008500 | chr3B | 83.152 | 552 | 55 | 15 | 1 | 538 | 25387251 | 25387778 | 1.170000e-128 | 470.0 |
22 | TraesCS6B01G008500 | chr3B | 83.969 | 393 | 44 | 10 | 169 | 545 | 450824444 | 450824055 | 2.650000e-95 | 359.0 |
23 | TraesCS6B01G008500 | chr3B | 90.659 | 182 | 17 | 0 | 2108 | 2289 | 776188683 | 776188502 | 2.780000e-60 | 243.0 |
24 | TraesCS6B01G008500 | chr3B | 91.667 | 96 | 5 | 3 | 2436 | 2531 | 71403657 | 71403749 | 2.260000e-26 | 130.0 |
25 | TraesCS6B01G008500 | chr3B | 91.304 | 92 | 7 | 1 | 2430 | 2521 | 26656538 | 26656448 | 1.050000e-24 | 124.0 |
26 | TraesCS6B01G008500 | chr3B | 96.000 | 50 | 0 | 2 | 2520 | 2569 | 509794944 | 509794897 | 2.310000e-11 | 80.5 |
27 | TraesCS6B01G008500 | chr2D | 81.317 | 562 | 77 | 13 | 1 | 551 | 155340472 | 155339928 | 5.540000e-117 | 431.0 |
28 | TraesCS6B01G008500 | chr2D | 77.348 | 543 | 79 | 25 | 25 | 545 | 633573757 | 633574277 | 5.900000e-72 | 281.0 |
29 | TraesCS6B01G008500 | chr5B | 80.075 | 532 | 80 | 16 | 25 | 544 | 58188711 | 58189228 | 3.400000e-99 | 372.0 |
30 | TraesCS6B01G008500 | chr5B | 79.135 | 532 | 77 | 20 | 25 | 548 | 116897699 | 116897194 | 1.240000e-88 | 337.0 |
31 | TraesCS6B01G008500 | chr5B | 87.097 | 124 | 14 | 2 | 2441 | 2564 | 227646629 | 227646508 | 3.760000e-29 | 139.0 |
32 | TraesCS6B01G008500 | chr5B | 95.652 | 46 | 2 | 0 | 2107 | 2152 | 611854784 | 611854739 | 1.070000e-09 | 75.0 |
33 | TraesCS6B01G008500 | chr5B | 95.556 | 45 | 2 | 0 | 2108 | 2152 | 509470067 | 509470023 | 3.870000e-09 | 73.1 |
34 | TraesCS6B01G008500 | chr6A | 79.576 | 519 | 77 | 15 | 43 | 549 | 109685255 | 109685756 | 7.420000e-91 | 344.0 |
35 | TraesCS6B01G008500 | chr3D | 79.813 | 535 | 59 | 29 | 31 | 548 | 409934306 | 409933804 | 7.420000e-91 | 344.0 |
36 | TraesCS6B01G008500 | chr3D | 77.738 | 557 | 79 | 34 | 11 | 545 | 532181062 | 532181595 | 1.630000e-77 | 300.0 |
37 | TraesCS6B01G008500 | chr3D | 86.282 | 277 | 27 | 6 | 274 | 549 | 3352551 | 3352817 | 9.800000e-75 | 291.0 |
38 | TraesCS6B01G008500 | chr3D | 92.857 | 112 | 5 | 3 | 2455 | 2564 | 11463497 | 11463387 | 2.880000e-35 | 159.0 |
39 | TraesCS6B01G008500 | chr2B | 78.216 | 583 | 70 | 28 | 1 | 545 | 472625485 | 472624922 | 1.250000e-83 | 320.0 |
40 | TraesCS6B01G008500 | chr2B | 81.491 | 389 | 50 | 8 | 1 | 379 | 705879950 | 705879574 | 1.630000e-77 | 300.0 |
41 | TraesCS6B01G008500 | chr2B | 91.758 | 182 | 14 | 1 | 2108 | 2288 | 598956379 | 598956198 | 4.630000e-63 | 252.0 |
42 | TraesCS6B01G008500 | chr2B | 89.305 | 187 | 15 | 3 | 2108 | 2289 | 360845686 | 360845872 | 2.170000e-56 | 230.0 |
43 | TraesCS6B01G008500 | chr2B | 91.406 | 128 | 6 | 2 | 2440 | 2567 | 743741017 | 743740895 | 1.330000e-38 | 171.0 |
44 | TraesCS6B01G008500 | chr2B | 91.753 | 97 | 5 | 3 | 2426 | 2521 | 13713004 | 13713098 | 6.290000e-27 | 132.0 |
45 | TraesCS6B01G008500 | chr7D | 78.119 | 521 | 87 | 21 | 1407 | 1912 | 601589506 | 601588998 | 3.500000e-79 | 305.0 |
46 | TraesCS6B01G008500 | chr7D | 78.030 | 528 | 73 | 22 | 21 | 532 | 183031338 | 183030838 | 2.730000e-75 | 292.0 |
47 | TraesCS6B01G008500 | chr7D | 80.403 | 347 | 59 | 3 | 1436 | 1773 | 554212971 | 554212625 | 3.580000e-64 | 255.0 |
48 | TraesCS6B01G008500 | chr7D | 86.592 | 179 | 20 | 4 | 2109 | 2286 | 351087527 | 351087702 | 7.910000e-46 | 195.0 |
49 | TraesCS6B01G008500 | chr7D | 74.161 | 298 | 54 | 17 | 1511 | 1792 | 585178289 | 585178579 | 4.930000e-18 | 102.0 |
50 | TraesCS6B01G008500 | chr7A | 87.222 | 180 | 22 | 1 | 2108 | 2287 | 52329104 | 52328926 | 1.310000e-48 | 204.0 |
51 | TraesCS6B01G008500 | chr7A | 72.074 | 487 | 94 | 26 | 1340 | 1793 | 675388564 | 675389041 | 1.060000e-19 | 108.0 |
52 | TraesCS6B01G008500 | chr4A | 85.897 | 156 | 14 | 5 | 2139 | 2287 | 621812369 | 621812215 | 2.880000e-35 | 159.0 |
53 | TraesCS6B01G008500 | chr4B | 90.517 | 116 | 5 | 3 | 2441 | 2556 | 464223347 | 464223238 | 6.240000e-32 | 148.0 |
54 | TraesCS6B01G008500 | chr4B | 88.333 | 120 | 6 | 3 | 2452 | 2564 | 286072509 | 286072627 | 1.350000e-28 | 137.0 |
55 | TraesCS6B01G008500 | chrUn | 90.909 | 99 | 5 | 4 | 2437 | 2535 | 394816486 | 394816392 | 2.260000e-26 | 130.0 |
56 | TraesCS6B01G008500 | chr4D | 100.000 | 45 | 0 | 0 | 2524 | 2568 | 136689474 | 136689430 | 1.790000e-12 | 84.2 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6B01G008500 | chr6B | 5553405 | 5556202 | 2797 | True | 5168.000000 | 5168 | 100.000000 | 1 | 2798 | 1 | chr6B.!!$R2 | 2797 |
1 | TraesCS6B01G008500 | chr6B | 8887964 | 8889526 | 1562 | True | 2233.000000 | 2233 | 92.450000 | 545 | 2107 | 1 | chr6B.!!$R3 | 1562 |
2 | TraesCS6B01G008500 | chr6B | 2807607 | 2809584 | 1977 | True | 1383.500000 | 2558 | 91.443000 | 1 | 2036 | 2 | chr6B.!!$R7 | 2035 |
3 | TraesCS6B01G008500 | chr6B | 2799563 | 2803080 | 3517 | True | 1322.000000 | 2322 | 91.981000 | 545 | 2798 | 2 | chr6B.!!$R6 | 2253 |
4 | TraesCS6B01G008500 | chr6B | 5070757 | 5072716 | 1959 | True | 1043.666667 | 2610 | 90.685333 | 545 | 2751 | 3 | chr6B.!!$R8 | 2206 |
5 | TraesCS6B01G008500 | chr6B | 5076977 | 5077625 | 648 | True | 785.000000 | 785 | 88.314000 | 1331 | 2006 | 1 | chr6B.!!$R1 | 675 |
6 | TraesCS6B01G008500 | chr6B | 365739069 | 365739618 | 549 | True | 545.000000 | 545 | 85.118000 | 1 | 532 | 1 | chr6B.!!$R4 | 531 |
7 | TraesCS6B01G008500 | chr6D | 1373069 | 1374615 | 1546 | False | 2141.000000 | 2141 | 91.587000 | 545 | 2107 | 1 | chr6D.!!$F1 | 1562 |
8 | TraesCS6B01G008500 | chr6D | 302632393 | 302632935 | 542 | True | 326.000000 | 326 | 78.596000 | 6 | 547 | 1 | chr6D.!!$R1 | 541 |
9 | TraesCS6B01G008500 | chr3A | 731785976 | 731787474 | 1498 | True | 2126.000000 | 2126 | 92.226000 | 545 | 2049 | 1 | chr3A.!!$R1 | 1504 |
10 | TraesCS6B01G008500 | chr7B | 680853282 | 680854463 | 1181 | True | 510.000000 | 510 | 74.979000 | 626 | 1789 | 1 | chr7B.!!$R2 | 1163 |
11 | TraesCS6B01G008500 | chr1B | 296550272 | 296550823 | 551 | True | 473.000000 | 473 | 82.740000 | 6 | 548 | 1 | chr1B.!!$R1 | 542 |
12 | TraesCS6B01G008500 | chr3B | 25387251 | 25387778 | 527 | False | 470.000000 | 470 | 83.152000 | 1 | 538 | 1 | chr3B.!!$F1 | 537 |
13 | TraesCS6B01G008500 | chr2D | 155339928 | 155340472 | 544 | True | 431.000000 | 431 | 81.317000 | 1 | 551 | 1 | chr2D.!!$R1 | 550 |
14 | TraesCS6B01G008500 | chr2D | 633573757 | 633574277 | 520 | False | 281.000000 | 281 | 77.348000 | 25 | 545 | 1 | chr2D.!!$F1 | 520 |
15 | TraesCS6B01G008500 | chr5B | 58188711 | 58189228 | 517 | False | 372.000000 | 372 | 80.075000 | 25 | 544 | 1 | chr5B.!!$F1 | 519 |
16 | TraesCS6B01G008500 | chr5B | 116897194 | 116897699 | 505 | True | 337.000000 | 337 | 79.135000 | 25 | 548 | 1 | chr5B.!!$R1 | 523 |
17 | TraesCS6B01G008500 | chr6A | 109685255 | 109685756 | 501 | False | 344.000000 | 344 | 79.576000 | 43 | 549 | 1 | chr6A.!!$F1 | 506 |
18 | TraesCS6B01G008500 | chr3D | 409933804 | 409934306 | 502 | True | 344.000000 | 344 | 79.813000 | 31 | 548 | 1 | chr3D.!!$R2 | 517 |
19 | TraesCS6B01G008500 | chr3D | 532181062 | 532181595 | 533 | False | 300.000000 | 300 | 77.738000 | 11 | 545 | 1 | chr3D.!!$F2 | 534 |
20 | TraesCS6B01G008500 | chr2B | 472624922 | 472625485 | 563 | True | 320.000000 | 320 | 78.216000 | 1 | 545 | 1 | chr2B.!!$R1 | 544 |
21 | TraesCS6B01G008500 | chr7D | 601588998 | 601589506 | 508 | True | 305.000000 | 305 | 78.119000 | 1407 | 1912 | 1 | chr7D.!!$R3 | 505 |
22 | TraesCS6B01G008500 | chr7D | 183030838 | 183031338 | 500 | True | 292.000000 | 292 | 78.030000 | 21 | 532 | 1 | chr7D.!!$R1 | 511 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
611 | 705 | 1.800805 | CACTGAAGCTTGTCGGACAT | 58.199 | 50.0 | 12.26 | 0.0 | 0.0 | 3.06 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2218 | 3873 | 0.035439 | AACGTGGTAGGCTGGGATTG | 60.035 | 55.0 | 0.0 | 0.0 | 0.0 | 2.67 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
202 | 216 | 2.829458 | GCCGACTCCGACTAGCCT | 60.829 | 66.667 | 0.00 | 0.00 | 38.22 | 4.58 |
211 | 225 | 4.803426 | GACTAGCCTGCGCACGCT | 62.803 | 66.667 | 31.31 | 31.31 | 42.51 | 5.07 |
389 | 477 | 4.278419 | GGCATTGATCGCCTTTTTAGGTAT | 59.722 | 41.667 | 3.09 | 0.00 | 46.56 | 2.73 |
411 | 501 | 4.742417 | TGCGGGAAATGTATGTTTGAATG | 58.258 | 39.130 | 0.00 | 0.00 | 0.00 | 2.67 |
604 | 698 | 2.289945 | CCTCTTAGGCACTGAAGCTTGT | 60.290 | 50.000 | 2.10 | 0.00 | 41.52 | 3.16 |
611 | 705 | 1.800805 | CACTGAAGCTTGTCGGACAT | 58.199 | 50.000 | 12.26 | 0.00 | 0.00 | 3.06 |
1899 | 2036 | 4.137543 | CCCCTTGGATTTAGAGCATGTAC | 58.862 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
2006 | 2149 | 8.041323 | ACGTCTGGTTCTTATTGTGATATCTTT | 58.959 | 33.333 | 3.98 | 0.00 | 0.00 | 2.52 |
2057 | 3712 | 8.973378 | GTATCTGTTAGCACTAATCTTGATCAC | 58.027 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
2058 | 3713 | 7.175347 | TCTGTTAGCACTAATCTTGATCACT | 57.825 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2063 | 3718 | 8.821894 | GTTAGCACTAATCTTGATCACTTTAGG | 58.178 | 37.037 | 16.79 | 10.31 | 0.00 | 2.69 |
2085 | 3740 | 5.045797 | AGGGGAGTTATTGTCCAAGTAGTTC | 60.046 | 44.000 | 0.00 | 0.00 | 35.57 | 3.01 |
2107 | 3762 | 1.154469 | GCTTGCACGCCGTTAGTTC | 60.154 | 57.895 | 3.29 | 0.00 | 0.00 | 3.01 |
2108 | 3763 | 1.837538 | GCTTGCACGCCGTTAGTTCA | 61.838 | 55.000 | 3.29 | 0.00 | 0.00 | 3.18 |
2109 | 3764 | 0.584396 | CTTGCACGCCGTTAGTTCAA | 59.416 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2110 | 3765 | 1.196808 | CTTGCACGCCGTTAGTTCAAT | 59.803 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
2111 | 3766 | 2.081725 | TGCACGCCGTTAGTTCAATA | 57.918 | 45.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2112 | 3767 | 2.414806 | TGCACGCCGTTAGTTCAATAA | 58.585 | 42.857 | 0.00 | 0.00 | 0.00 | 1.40 |
2113 | 3768 | 3.004171 | TGCACGCCGTTAGTTCAATAAT | 58.996 | 40.909 | 0.00 | 0.00 | 0.00 | 1.28 |
2114 | 3769 | 3.181515 | TGCACGCCGTTAGTTCAATAATG | 60.182 | 43.478 | 0.00 | 0.00 | 0.00 | 1.90 |
2115 | 3770 | 3.350912 | CACGCCGTTAGTTCAATAATGC | 58.649 | 45.455 | 0.00 | 0.00 | 0.00 | 3.56 |
2116 | 3771 | 3.063452 | CACGCCGTTAGTTCAATAATGCT | 59.937 | 43.478 | 0.00 | 0.00 | 0.00 | 3.79 |
2117 | 3772 | 4.269123 | CACGCCGTTAGTTCAATAATGCTA | 59.731 | 41.667 | 0.00 | 0.00 | 0.00 | 3.49 |
2118 | 3773 | 4.269363 | ACGCCGTTAGTTCAATAATGCTAC | 59.731 | 41.667 | 0.00 | 0.00 | 0.00 | 3.58 |
2119 | 3774 | 4.269123 | CGCCGTTAGTTCAATAATGCTACA | 59.731 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
2120 | 3775 | 5.050363 | CGCCGTTAGTTCAATAATGCTACAT | 60.050 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2121 | 3776 | 6.363473 | GCCGTTAGTTCAATAATGCTACATC | 58.637 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2122 | 3777 | 6.202954 | GCCGTTAGTTCAATAATGCTACATCT | 59.797 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
2123 | 3778 | 7.384115 | GCCGTTAGTTCAATAATGCTACATCTA | 59.616 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
2124 | 3779 | 8.700644 | CCGTTAGTTCAATAATGCTACATCTAC | 58.299 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
2125 | 3780 | 8.417928 | CGTTAGTTCAATAATGCTACATCTACG | 58.582 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
2126 | 3781 | 9.245962 | GTTAGTTCAATAATGCTACATCTACGT | 57.754 | 33.333 | 0.00 | 0.00 | 0.00 | 3.57 |
2129 | 3784 | 9.811995 | AGTTCAATAATGCTACATCTACGTAAA | 57.188 | 29.630 | 0.00 | 0.00 | 0.00 | 2.01 |
2148 | 3803 | 6.215477 | GTAAAACGTTACGAAAGCTTACCT | 57.785 | 37.500 | 13.03 | 0.00 | 30.76 | 3.08 |
2149 | 3804 | 7.333288 | GTAAAACGTTACGAAAGCTTACCTA | 57.667 | 36.000 | 13.03 | 0.00 | 30.76 | 3.08 |
2150 | 3805 | 6.843069 | AAAACGTTACGAAAGCTTACCTAA | 57.157 | 33.333 | 13.03 | 0.00 | 0.00 | 2.69 |
2151 | 3806 | 5.829233 | AACGTTACGAAAGCTTACCTAAC | 57.171 | 39.130 | 13.03 | 4.85 | 0.00 | 2.34 |
2152 | 3807 | 5.126396 | ACGTTACGAAAGCTTACCTAACT | 57.874 | 39.130 | 13.03 | 0.00 | 0.00 | 2.24 |
2153 | 3808 | 5.532557 | ACGTTACGAAAGCTTACCTAACTT | 58.467 | 37.500 | 13.03 | 0.00 | 0.00 | 2.66 |
2154 | 3809 | 5.403466 | ACGTTACGAAAGCTTACCTAACTTG | 59.597 | 40.000 | 13.03 | 0.00 | 0.00 | 3.16 |
2155 | 3810 | 5.630680 | CGTTACGAAAGCTTACCTAACTTGA | 59.369 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2156 | 3811 | 6.399354 | CGTTACGAAAGCTTACCTAACTTGAC | 60.399 | 42.308 | 0.00 | 0.00 | 0.00 | 3.18 |
2157 | 3812 | 5.211174 | ACGAAAGCTTACCTAACTTGACT | 57.789 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
2158 | 3813 | 6.336842 | ACGAAAGCTTACCTAACTTGACTA | 57.663 | 37.500 | 0.00 | 0.00 | 0.00 | 2.59 |
2159 | 3814 | 6.752168 | ACGAAAGCTTACCTAACTTGACTAA | 58.248 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2160 | 3815 | 7.212274 | ACGAAAGCTTACCTAACTTGACTAAA | 58.788 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
2161 | 3816 | 7.876582 | ACGAAAGCTTACCTAACTTGACTAAAT | 59.123 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2162 | 3817 | 8.718734 | CGAAAGCTTACCTAACTTGACTAAATT | 58.281 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2175 | 3830 | 8.809468 | ACTTGACTAAATTAAATTCTCTCCCC | 57.191 | 34.615 | 0.00 | 0.00 | 0.00 | 4.81 |
2176 | 3831 | 7.834681 | ACTTGACTAAATTAAATTCTCTCCCCC | 59.165 | 37.037 | 0.00 | 0.00 | 0.00 | 5.40 |
2193 | 3848 | 1.822371 | CCCCCTGATTTTAAACGGTGG | 59.178 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
2194 | 3849 | 2.521126 | CCCCTGATTTTAAACGGTGGT | 58.479 | 47.619 | 0.00 | 0.00 | 0.00 | 4.16 |
2195 | 3850 | 2.230266 | CCCCTGATTTTAAACGGTGGTG | 59.770 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2196 | 3851 | 2.230266 | CCCTGATTTTAAACGGTGGTGG | 59.770 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2197 | 3852 | 2.230266 | CCTGATTTTAAACGGTGGTGGG | 59.770 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2198 | 3853 | 1.614413 | TGATTTTAAACGGTGGTGGGC | 59.386 | 47.619 | 0.00 | 0.00 | 0.00 | 5.36 |
2199 | 3854 | 0.970640 | ATTTTAAACGGTGGTGGGCC | 59.029 | 50.000 | 0.00 | 0.00 | 0.00 | 5.80 |
2200 | 3855 | 1.114119 | TTTTAAACGGTGGTGGGCCC | 61.114 | 55.000 | 17.59 | 17.59 | 0.00 | 5.80 |
2201 | 3856 | 2.998301 | TTTAAACGGTGGTGGGCCCC | 62.998 | 60.000 | 22.27 | 10.91 | 0.00 | 5.80 |
2207 | 3862 | 4.048470 | GTGGTGGGCCCCTTCCTC | 62.048 | 72.222 | 22.27 | 15.79 | 0.00 | 3.71 |
2214 | 3869 | 4.439901 | GCCCCTTCCTCCCCCTCT | 62.440 | 72.222 | 0.00 | 0.00 | 0.00 | 3.69 |
2215 | 3870 | 2.040359 | CCCCTTCCTCCCCCTCTC | 60.040 | 72.222 | 0.00 | 0.00 | 0.00 | 3.20 |
2216 | 3871 | 2.652113 | CCCCTTCCTCCCCCTCTCT | 61.652 | 68.421 | 0.00 | 0.00 | 0.00 | 3.10 |
2217 | 3872 | 1.074850 | CCCTTCCTCCCCCTCTCTC | 60.075 | 68.421 | 0.00 | 0.00 | 0.00 | 3.20 |
2218 | 3873 | 1.074850 | CCTTCCTCCCCCTCTCTCC | 60.075 | 68.421 | 0.00 | 0.00 | 0.00 | 3.71 |
2219 | 3874 | 1.706575 | CTTCCTCCCCCTCTCTCCA | 59.293 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
2220 | 3875 | 0.043334 | CTTCCTCCCCCTCTCTCCAA | 59.957 | 60.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2221 | 3876 | 0.725133 | TTCCTCCCCCTCTCTCCAAT | 59.275 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2222 | 3877 | 0.266152 | TCCTCCCCCTCTCTCCAATC | 59.734 | 60.000 | 0.00 | 0.00 | 0.00 | 2.67 |
2223 | 3878 | 0.766288 | CCTCCCCCTCTCTCCAATCC | 60.766 | 65.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2224 | 3879 | 0.766288 | CTCCCCCTCTCTCCAATCCC | 60.766 | 65.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2225 | 3880 | 1.004758 | CCCCCTCTCTCCAATCCCA | 59.995 | 63.158 | 0.00 | 0.00 | 0.00 | 4.37 |
2226 | 3881 | 1.059006 | CCCCCTCTCTCCAATCCCAG | 61.059 | 65.000 | 0.00 | 0.00 | 0.00 | 4.45 |
2227 | 3882 | 1.704007 | CCCCTCTCTCCAATCCCAGC | 61.704 | 65.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2228 | 3883 | 1.704007 | CCCTCTCTCCAATCCCAGCC | 61.704 | 65.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2229 | 3884 | 0.693767 | CCTCTCTCCAATCCCAGCCT | 60.694 | 60.000 | 0.00 | 0.00 | 0.00 | 4.58 |
2230 | 3885 | 1.413662 | CCTCTCTCCAATCCCAGCCTA | 60.414 | 57.143 | 0.00 | 0.00 | 0.00 | 3.93 |
2231 | 3886 | 1.691434 | CTCTCTCCAATCCCAGCCTAC | 59.309 | 57.143 | 0.00 | 0.00 | 0.00 | 3.18 |
2232 | 3887 | 0.761802 | CTCTCCAATCCCAGCCTACC | 59.238 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2233 | 3888 | 0.044092 | TCTCCAATCCCAGCCTACCA | 59.956 | 55.000 | 0.00 | 0.00 | 0.00 | 3.25 |
2234 | 3889 | 0.181350 | CTCCAATCCCAGCCTACCAC | 59.819 | 60.000 | 0.00 | 0.00 | 0.00 | 4.16 |
2235 | 3890 | 1.153168 | CCAATCCCAGCCTACCACG | 60.153 | 63.158 | 0.00 | 0.00 | 0.00 | 4.94 |
2236 | 3891 | 1.602237 | CAATCCCAGCCTACCACGT | 59.398 | 57.895 | 0.00 | 0.00 | 0.00 | 4.49 |
2237 | 3892 | 0.035439 | CAATCCCAGCCTACCACGTT | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 3.99 |
2238 | 3893 | 0.035439 | AATCCCAGCCTACCACGTTG | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 4.10 |
2239 | 3894 | 2.536997 | ATCCCAGCCTACCACGTTGC | 62.537 | 60.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2240 | 3895 | 2.347490 | CCAGCCTACCACGTTGCT | 59.653 | 61.111 | 0.00 | 0.00 | 33.52 | 3.91 |
2241 | 3896 | 1.741770 | CCAGCCTACCACGTTGCTC | 60.742 | 63.158 | 0.00 | 0.00 | 30.08 | 4.26 |
2242 | 3897 | 1.293498 | CAGCCTACCACGTTGCTCT | 59.707 | 57.895 | 0.00 | 0.00 | 30.08 | 4.09 |
2243 | 3898 | 0.320771 | CAGCCTACCACGTTGCTCTT | 60.321 | 55.000 | 0.00 | 0.00 | 30.08 | 2.85 |
2244 | 3899 | 0.396811 | AGCCTACCACGTTGCTCTTT | 59.603 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2245 | 3900 | 1.621814 | AGCCTACCACGTTGCTCTTTA | 59.378 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
2246 | 3901 | 1.730612 | GCCTACCACGTTGCTCTTTAC | 59.269 | 52.381 | 0.00 | 0.00 | 0.00 | 2.01 |
2247 | 3902 | 1.990563 | CCTACCACGTTGCTCTTTACG | 59.009 | 52.381 | 0.00 | 0.00 | 43.08 | 3.18 |
2258 | 3913 | 6.814343 | CGTTGCTCTTTACGTTACTTTATGT | 58.186 | 36.000 | 0.00 | 0.00 | 33.33 | 2.29 |
2259 | 3914 | 7.285788 | CGTTGCTCTTTACGTTACTTTATGTT | 58.714 | 34.615 | 0.00 | 0.00 | 33.33 | 2.71 |
2260 | 3915 | 7.795272 | CGTTGCTCTTTACGTTACTTTATGTTT | 59.205 | 33.333 | 0.00 | 0.00 | 33.33 | 2.83 |
2261 | 3916 | 8.889000 | GTTGCTCTTTACGTTACTTTATGTTTG | 58.111 | 33.333 | 0.00 | 0.00 | 0.00 | 2.93 |
2262 | 3917 | 8.145316 | TGCTCTTTACGTTACTTTATGTTTGT | 57.855 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
2263 | 3918 | 8.065407 | TGCTCTTTACGTTACTTTATGTTTGTG | 58.935 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
2264 | 3919 | 8.066000 | GCTCTTTACGTTACTTTATGTTTGTGT | 58.934 | 33.333 | 0.00 | 0.00 | 0.00 | 3.72 |
2265 | 3920 | 9.925268 | CTCTTTACGTTACTTTATGTTTGTGTT | 57.075 | 29.630 | 0.00 | 0.00 | 0.00 | 3.32 |
2270 | 3925 | 8.532408 | ACGTTACTTTATGTTTGTGTTTTACG | 57.468 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
2271 | 3926 | 8.174422 | ACGTTACTTTATGTTTGTGTTTTACGT | 58.826 | 29.630 | 0.00 | 0.00 | 0.00 | 3.57 |
2272 | 3927 | 9.630310 | CGTTACTTTATGTTTGTGTTTTACGTA | 57.370 | 29.630 | 0.00 | 0.00 | 0.00 | 3.57 |
2276 | 3931 | 9.872757 | ACTTTATGTTTGTGTTTTACGTAGATG | 57.127 | 29.630 | 0.00 | 0.00 | 0.00 | 2.90 |
2277 | 3932 | 9.872757 | CTTTATGTTTGTGTTTTACGTAGATGT | 57.127 | 29.630 | 0.00 | 0.00 | 0.00 | 3.06 |
2280 | 3935 | 6.879962 | TGTTTGTGTTTTACGTAGATGTAGC | 58.120 | 36.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2281 | 3936 | 6.479331 | TGTTTGTGTTTTACGTAGATGTAGCA | 59.521 | 34.615 | 0.00 | 0.00 | 0.00 | 3.49 |
2282 | 3937 | 7.171848 | TGTTTGTGTTTTACGTAGATGTAGCAT | 59.828 | 33.333 | 0.00 | 0.00 | 0.00 | 3.79 |
2283 | 3938 | 7.661127 | TTGTGTTTTACGTAGATGTAGCATT | 57.339 | 32.000 | 0.00 | 0.00 | 0.00 | 3.56 |
2284 | 3939 | 8.760103 | TTGTGTTTTACGTAGATGTAGCATTA | 57.240 | 30.769 | 0.00 | 0.00 | 0.00 | 1.90 |
2285 | 3940 | 8.176814 | TGTGTTTTACGTAGATGTAGCATTAC | 57.823 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
2286 | 3941 | 8.030692 | TGTGTTTTACGTAGATGTAGCATTACT | 58.969 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2287 | 3942 | 8.318876 | GTGTTTTACGTAGATGTAGCATTACTG | 58.681 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
2376 | 4032 | 0.824595 | GTGGGCTCCATGCATGCATA | 60.825 | 55.000 | 31.73 | 17.29 | 45.15 | 3.14 |
2385 | 4041 | 4.938028 | TCCATGCATGCATATAGGGATTT | 58.062 | 39.130 | 31.73 | 4.96 | 34.91 | 2.17 |
2391 | 4047 | 4.491676 | CATGCATATAGGGATTTGCTTGC | 58.508 | 43.478 | 0.00 | 0.00 | 39.83 | 4.01 |
2416 | 4072 | 4.466726 | AGGTTGGTCAGTTAGTTAGCTAGG | 59.533 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
2423 | 4079 | 6.035217 | GTCAGTTAGTTAGCTAGGTTAGTGC | 58.965 | 44.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2431 | 4087 | 1.683790 | CTAGGTTAGTGCGTGCGTGC | 61.684 | 60.000 | 0.00 | 0.00 | 0.00 | 5.34 |
2466 | 4126 | 6.371825 | ACTCCCTTCGTTTCAAAATAGATGAC | 59.628 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
2467 | 4127 | 5.646360 | TCCCTTCGTTTCAAAATAGATGACC | 59.354 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2468 | 4128 | 5.163652 | CCCTTCGTTTCAAAATAGATGACCC | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 4.46 |
2482 | 4142 | 9.802039 | AAATAGATGACCCAACTTTGTACTAAA | 57.198 | 29.630 | 0.00 | 0.00 | 0.00 | 1.85 |
2483 | 4143 | 9.449719 | AATAGATGACCCAACTTTGTACTAAAG | 57.550 | 33.333 | 13.08 | 13.08 | 0.00 | 1.85 |
2503 | 4163 | 9.841295 | ACTAAAGTTTAGTACAAAGTTGGATCA | 57.159 | 29.630 | 23.73 | 0.00 | 0.00 | 2.92 |
2506 | 4166 | 9.574516 | AAAGTTTAGTACAAAGTTGGATCATCT | 57.425 | 29.630 | 0.00 | 0.00 | 0.00 | 2.90 |
2513 | 4173 | 8.960591 | AGTACAAAGTTGGATCATCTATTTTGG | 58.039 | 33.333 | 11.01 | 0.00 | 0.00 | 3.28 |
2514 | 4174 | 8.956426 | GTACAAAGTTGGATCATCTATTTTGGA | 58.044 | 33.333 | 11.01 | 2.87 | 0.00 | 3.53 |
2515 | 4175 | 8.421249 | ACAAAGTTGGATCATCTATTTTGGAA | 57.579 | 30.769 | 11.01 | 0.00 | 0.00 | 3.53 |
2516 | 4176 | 8.306761 | ACAAAGTTGGATCATCTATTTTGGAAC | 58.693 | 33.333 | 11.01 | 0.00 | 0.00 | 3.62 |
2517 | 4177 | 6.683974 | AGTTGGATCATCTATTTTGGAACG | 57.316 | 37.500 | 0.00 | 0.00 | 0.00 | 3.95 |
2518 | 4178 | 5.590259 | AGTTGGATCATCTATTTTGGAACGG | 59.410 | 40.000 | 0.00 | 0.00 | 0.00 | 4.44 |
2519 | 4179 | 5.366482 | TGGATCATCTATTTTGGAACGGA | 57.634 | 39.130 | 0.00 | 0.00 | 0.00 | 4.69 |
2520 | 4180 | 5.368145 | TGGATCATCTATTTTGGAACGGAG | 58.632 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
2522 | 4182 | 6.099125 | TGGATCATCTATTTTGGAACGGAGTA | 59.901 | 38.462 | 0.00 | 0.00 | 45.00 | 2.59 |
2523 | 4183 | 7.162082 | GGATCATCTATTTTGGAACGGAGTAT | 58.838 | 38.462 | 0.00 | 0.00 | 45.00 | 2.12 |
2524 | 4184 | 8.311836 | GGATCATCTATTTTGGAACGGAGTATA | 58.688 | 37.037 | 0.00 | 0.00 | 45.00 | 1.47 |
2525 | 4185 | 9.360093 | GATCATCTATTTTGGAACGGAGTATAG | 57.640 | 37.037 | 0.00 | 0.00 | 45.00 | 1.31 |
2526 | 4186 | 8.246430 | TCATCTATTTTGGAACGGAGTATAGT | 57.754 | 34.615 | 0.00 | 0.00 | 45.00 | 2.12 |
2527 | 4187 | 9.358406 | TCATCTATTTTGGAACGGAGTATAGTA | 57.642 | 33.333 | 0.00 | 0.00 | 45.00 | 1.82 |
2528 | 4188 | 9.408069 | CATCTATTTTGGAACGGAGTATAGTAC | 57.592 | 37.037 | 0.00 | 0.00 | 45.00 | 2.73 |
2529 | 4189 | 8.523915 | TCTATTTTGGAACGGAGTATAGTACA | 57.476 | 34.615 | 0.00 | 0.00 | 45.00 | 2.90 |
2530 | 4190 | 8.970020 | TCTATTTTGGAACGGAGTATAGTACAA | 58.030 | 33.333 | 0.00 | 0.00 | 45.00 | 2.41 |
2531 | 4191 | 9.590451 | CTATTTTGGAACGGAGTATAGTACAAA | 57.410 | 33.333 | 0.00 | 0.00 | 45.00 | 2.83 |
2532 | 4192 | 7.894376 | TTTTGGAACGGAGTATAGTACAAAG | 57.106 | 36.000 | 0.00 | 0.00 | 45.00 | 2.77 |
2565 | 4225 | 1.772836 | TTAGGAACGGAGGGAGTAGC | 58.227 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2567 | 4227 | 0.924823 | AGGAACGGAGGGAGTAGCTA | 59.075 | 55.000 | 0.00 | 0.00 | 0.00 | 3.32 |
2568 | 4228 | 1.133730 | AGGAACGGAGGGAGTAGCTAG | 60.134 | 57.143 | 0.00 | 0.00 | 0.00 | 3.42 |
2573 | 4233 | 1.404843 | GGAGGGAGTAGCTAGGTGTG | 58.595 | 60.000 | 4.27 | 0.00 | 0.00 | 3.82 |
2574 | 4234 | 1.342175 | GGAGGGAGTAGCTAGGTGTGT | 60.342 | 57.143 | 4.27 | 0.00 | 0.00 | 3.72 |
2579 | 4239 | 1.546476 | GAGTAGCTAGGTGTGTGCACT | 59.454 | 52.381 | 19.41 | 0.00 | 44.65 | 4.40 |
2616 | 4276 | 2.106857 | TCCCTTTTGTATTGGTCCGTGT | 59.893 | 45.455 | 0.00 | 0.00 | 0.00 | 4.49 |
2619 | 4279 | 2.529780 | TTTGTATTGGTCCGTGTCGT | 57.470 | 45.000 | 0.00 | 0.00 | 0.00 | 4.34 |
2620 | 4280 | 1.785768 | TTGTATTGGTCCGTGTCGTG | 58.214 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2621 | 4281 | 0.675083 | TGTATTGGTCCGTGTCGTGT | 59.325 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
2622 | 4282 | 1.065358 | GTATTGGTCCGTGTCGTGTG | 58.935 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
2689 | 4354 | 1.613437 | AGGCATTTGTCACCGGAAAAG | 59.387 | 47.619 | 9.46 | 0.00 | 0.00 | 2.27 |
2691 | 4356 | 2.607038 | GGCATTTGTCACCGGAAAAGAC | 60.607 | 50.000 | 9.46 | 11.20 | 0.00 | 3.01 |
2695 | 4360 | 3.842007 | TTGTCACCGGAAAAGACCTTA | 57.158 | 42.857 | 9.46 | 0.00 | 0.00 | 2.69 |
2701 | 4366 | 2.277084 | CCGGAAAAGACCTTATGTCCG | 58.723 | 52.381 | 16.25 | 16.25 | 45.68 | 4.79 |
2713 | 4378 | 3.127030 | CCTTATGTCCGGTTTGCTTCTTC | 59.873 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
2726 | 4391 | 1.987074 | GCTTCTTCTTCGACCTTCGTC | 59.013 | 52.381 | 0.00 | 0.00 | 41.35 | 4.20 |
2727 | 4392 | 2.597520 | CTTCTTCTTCGACCTTCGTCC | 58.402 | 52.381 | 0.00 | 0.00 | 41.35 | 4.79 |
2742 | 4407 | 0.098905 | CGTCCGAGCGAATGAGAGAA | 59.901 | 55.000 | 0.00 | 0.00 | 0.00 | 2.87 |
2753 | 4422 | 4.601019 | CGAATGAGAGAAAGAGAGAGCTC | 58.399 | 47.826 | 5.27 | 5.27 | 41.62 | 4.09 |
2760 | 4429 | 1.336755 | GAAAGAGAGAGCTCGCTAGGG | 59.663 | 57.143 | 20.64 | 0.00 | 45.98 | 3.53 |
2763 | 4432 | 1.107945 | GAGAGAGCTCGCTAGGGTTT | 58.892 | 55.000 | 20.64 | 0.00 | 34.09 | 3.27 |
2764 | 4433 | 2.092321 | AGAGAGAGCTCGCTAGGGTTTA | 60.092 | 50.000 | 20.64 | 0.00 | 45.98 | 2.01 |
2786 | 4455 | 2.202932 | CATTCGGGTCGCAGGAGG | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
8 | 9 | 1.341976 | GCCCCTCCCATTAGAAAAGCA | 60.342 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
161 | 175 | 3.858868 | TTCTGTGCTGGGCGTCGTC | 62.859 | 63.158 | 0.00 | 0.00 | 0.00 | 4.20 |
225 | 239 | 1.154282 | TGTCGACGTCTGTCATCGC | 60.154 | 57.895 | 14.70 | 0.00 | 45.80 | 4.58 |
389 | 477 | 4.742417 | CATTCAAACATACATTTCCCGCA | 58.258 | 39.130 | 0.00 | 0.00 | 0.00 | 5.69 |
411 | 501 | 4.133796 | GGCCGCCAAGATGGTTGC | 62.134 | 66.667 | 3.91 | 1.50 | 40.46 | 4.17 |
604 | 698 | 1.381327 | GTCCCTCCCTCATGTCCGA | 60.381 | 63.158 | 0.00 | 0.00 | 0.00 | 4.55 |
672 | 766 | 4.342092 | AGTGTCATGTGGATGATATCGTCA | 59.658 | 41.667 | 23.22 | 7.18 | 40.78 | 4.35 |
1755 | 1890 | 0.109153 | TGCTCTCTTTGAGGCAGCAA | 59.891 | 50.000 | 8.02 | 0.00 | 42.87 | 3.91 |
1804 | 1941 | 4.574599 | ACTTGTCATCTTCCTTTTGCAC | 57.425 | 40.909 | 0.00 | 0.00 | 0.00 | 4.57 |
2057 | 3712 | 5.816682 | ACTTGGACAATAACTCCCCTAAAG | 58.183 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
2058 | 3713 | 5.853572 | ACTTGGACAATAACTCCCCTAAA | 57.146 | 39.130 | 0.00 | 0.00 | 0.00 | 1.85 |
2063 | 3718 | 4.868734 | CGAACTACTTGGACAATAACTCCC | 59.131 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2107 | 3762 | 8.898555 | CGTTTTACGTAGATGTAGCATTATTG | 57.101 | 34.615 | 0.00 | 0.00 | 36.74 | 1.90 |
2125 | 3780 | 6.215477 | AGGTAAGCTTTCGTAACGTTTTAC | 57.785 | 37.500 | 5.91 | 6.41 | 35.17 | 2.01 |
2126 | 3781 | 7.651704 | AGTTAGGTAAGCTTTCGTAACGTTTTA | 59.348 | 33.333 | 27.85 | 5.47 | 38.82 | 1.52 |
2127 | 3782 | 6.479990 | AGTTAGGTAAGCTTTCGTAACGTTTT | 59.520 | 34.615 | 27.85 | 16.55 | 38.82 | 2.43 |
2128 | 3783 | 5.985530 | AGTTAGGTAAGCTTTCGTAACGTTT | 59.014 | 36.000 | 27.85 | 16.80 | 38.82 | 3.60 |
2129 | 3784 | 5.532557 | AGTTAGGTAAGCTTTCGTAACGTT | 58.467 | 37.500 | 27.85 | 17.29 | 38.82 | 3.99 |
2130 | 3785 | 5.126396 | AGTTAGGTAAGCTTTCGTAACGT | 57.874 | 39.130 | 27.85 | 19.39 | 38.82 | 3.99 |
2131 | 3786 | 5.630680 | TCAAGTTAGGTAAGCTTTCGTAACG | 59.369 | 40.000 | 27.85 | 20.31 | 38.82 | 3.18 |
2132 | 3787 | 6.644181 | AGTCAAGTTAGGTAAGCTTTCGTAAC | 59.356 | 38.462 | 27.49 | 27.49 | 36.09 | 2.50 |
2133 | 3788 | 6.752168 | AGTCAAGTTAGGTAAGCTTTCGTAA | 58.248 | 36.000 | 3.20 | 9.24 | 0.00 | 3.18 |
2134 | 3789 | 6.336842 | AGTCAAGTTAGGTAAGCTTTCGTA | 57.663 | 37.500 | 3.20 | 2.37 | 0.00 | 3.43 |
2135 | 3790 | 5.211174 | AGTCAAGTTAGGTAAGCTTTCGT | 57.789 | 39.130 | 3.20 | 3.53 | 0.00 | 3.85 |
2136 | 3791 | 7.647907 | TTTAGTCAAGTTAGGTAAGCTTTCG | 57.352 | 36.000 | 3.20 | 0.00 | 0.00 | 3.46 |
2149 | 3804 | 9.244292 | GGGGAGAGAATTTAATTTAGTCAAGTT | 57.756 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
2150 | 3805 | 7.834681 | GGGGGAGAGAATTTAATTTAGTCAAGT | 59.165 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
2151 | 3806 | 8.226819 | GGGGGAGAGAATTTAATTTAGTCAAG | 57.773 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
2173 | 3828 | 1.822371 | CCACCGTTTAAAATCAGGGGG | 59.178 | 52.381 | 7.03 | 7.03 | 39.43 | 5.40 |
2174 | 3829 | 2.230266 | CACCACCGTTTAAAATCAGGGG | 59.770 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2175 | 3830 | 2.230266 | CCACCACCGTTTAAAATCAGGG | 59.770 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
2176 | 3831 | 2.230266 | CCCACCACCGTTTAAAATCAGG | 59.770 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2177 | 3832 | 2.352323 | GCCCACCACCGTTTAAAATCAG | 60.352 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2178 | 3833 | 1.614413 | GCCCACCACCGTTTAAAATCA | 59.386 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
2179 | 3834 | 1.067425 | GGCCCACCACCGTTTAAAATC | 60.067 | 52.381 | 0.00 | 0.00 | 35.26 | 2.17 |
2180 | 3835 | 0.970640 | GGCCCACCACCGTTTAAAAT | 59.029 | 50.000 | 0.00 | 0.00 | 35.26 | 1.82 |
2181 | 3836 | 1.114119 | GGGCCCACCACCGTTTAAAA | 61.114 | 55.000 | 19.95 | 0.00 | 39.85 | 1.52 |
2182 | 3837 | 1.531128 | GGGCCCACCACCGTTTAAA | 60.531 | 57.895 | 19.95 | 0.00 | 39.85 | 1.52 |
2183 | 3838 | 2.115695 | GGGCCCACCACCGTTTAA | 59.884 | 61.111 | 19.95 | 0.00 | 39.85 | 1.52 |
2184 | 3839 | 3.969119 | GGGGCCCACCACCGTTTA | 61.969 | 66.667 | 26.86 | 0.00 | 42.91 | 2.01 |
2190 | 3845 | 4.048470 | GAGGAAGGGGCCCACCAC | 62.048 | 72.222 | 30.83 | 24.14 | 42.91 | 4.16 |
2197 | 3852 | 4.439901 | AGAGGGGGAGGAAGGGGC | 62.440 | 72.222 | 0.00 | 0.00 | 0.00 | 5.80 |
2198 | 3853 | 2.040359 | GAGAGGGGGAGGAAGGGG | 60.040 | 72.222 | 0.00 | 0.00 | 0.00 | 4.79 |
2199 | 3854 | 1.074850 | GAGAGAGGGGGAGGAAGGG | 60.075 | 68.421 | 0.00 | 0.00 | 0.00 | 3.95 |
2200 | 3855 | 1.074850 | GGAGAGAGGGGGAGGAAGG | 60.075 | 68.421 | 0.00 | 0.00 | 0.00 | 3.46 |
2201 | 3856 | 0.043334 | TTGGAGAGAGGGGGAGGAAG | 59.957 | 60.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2202 | 3857 | 0.725133 | ATTGGAGAGAGGGGGAGGAA | 59.275 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2203 | 3858 | 0.266152 | GATTGGAGAGAGGGGGAGGA | 59.734 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2204 | 3859 | 0.766288 | GGATTGGAGAGAGGGGGAGG | 60.766 | 65.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2205 | 3860 | 0.766288 | GGGATTGGAGAGAGGGGGAG | 60.766 | 65.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2206 | 3861 | 1.318380 | GGGATTGGAGAGAGGGGGA | 59.682 | 63.158 | 0.00 | 0.00 | 0.00 | 4.81 |
2207 | 3862 | 1.004758 | TGGGATTGGAGAGAGGGGG | 59.995 | 63.158 | 0.00 | 0.00 | 0.00 | 5.40 |
2208 | 3863 | 1.704007 | GCTGGGATTGGAGAGAGGGG | 61.704 | 65.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2209 | 3864 | 1.704007 | GGCTGGGATTGGAGAGAGGG | 61.704 | 65.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2210 | 3865 | 0.693767 | AGGCTGGGATTGGAGAGAGG | 60.694 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2211 | 3866 | 1.691434 | GTAGGCTGGGATTGGAGAGAG | 59.309 | 57.143 | 0.00 | 0.00 | 0.00 | 3.20 |
2212 | 3867 | 1.692762 | GGTAGGCTGGGATTGGAGAGA | 60.693 | 57.143 | 0.00 | 0.00 | 0.00 | 3.10 |
2213 | 3868 | 0.761802 | GGTAGGCTGGGATTGGAGAG | 59.238 | 60.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2214 | 3869 | 0.044092 | TGGTAGGCTGGGATTGGAGA | 59.956 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2215 | 3870 | 0.181350 | GTGGTAGGCTGGGATTGGAG | 59.819 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2216 | 3871 | 1.622607 | CGTGGTAGGCTGGGATTGGA | 61.623 | 60.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2217 | 3872 | 1.153168 | CGTGGTAGGCTGGGATTGG | 60.153 | 63.158 | 0.00 | 0.00 | 0.00 | 3.16 |
2218 | 3873 | 0.035439 | AACGTGGTAGGCTGGGATTG | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 2.67 |
2219 | 3874 | 0.035439 | CAACGTGGTAGGCTGGGATT | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2220 | 3875 | 1.602237 | CAACGTGGTAGGCTGGGAT | 59.398 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
2221 | 3876 | 3.065306 | CAACGTGGTAGGCTGGGA | 58.935 | 61.111 | 0.00 | 0.00 | 0.00 | 4.37 |
2222 | 3877 | 2.746277 | GCAACGTGGTAGGCTGGG | 60.746 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
2223 | 3878 | 1.741770 | GAGCAACGTGGTAGGCTGG | 60.742 | 63.158 | 0.00 | 0.00 | 36.59 | 4.85 |
2224 | 3879 | 0.320771 | AAGAGCAACGTGGTAGGCTG | 60.321 | 55.000 | 0.00 | 0.00 | 36.59 | 4.85 |
2225 | 3880 | 0.396811 | AAAGAGCAACGTGGTAGGCT | 59.603 | 50.000 | 0.00 | 0.00 | 39.75 | 4.58 |
2226 | 3881 | 1.730612 | GTAAAGAGCAACGTGGTAGGC | 59.269 | 52.381 | 0.00 | 0.00 | 0.00 | 3.93 |
2227 | 3882 | 1.990563 | CGTAAAGAGCAACGTGGTAGG | 59.009 | 52.381 | 0.00 | 0.00 | 34.48 | 3.18 |
2234 | 3889 | 6.814343 | ACATAAAGTAACGTAAAGAGCAACG | 58.186 | 36.000 | 0.00 | 0.00 | 44.47 | 4.10 |
2235 | 3890 | 8.889000 | CAAACATAAAGTAACGTAAAGAGCAAC | 58.111 | 33.333 | 0.00 | 0.00 | 0.00 | 4.17 |
2236 | 3891 | 8.614346 | ACAAACATAAAGTAACGTAAAGAGCAA | 58.386 | 29.630 | 0.00 | 0.00 | 0.00 | 3.91 |
2237 | 3892 | 8.065407 | CACAAACATAAAGTAACGTAAAGAGCA | 58.935 | 33.333 | 0.00 | 0.00 | 0.00 | 4.26 |
2238 | 3893 | 8.066000 | ACACAAACATAAAGTAACGTAAAGAGC | 58.934 | 33.333 | 0.00 | 0.00 | 0.00 | 4.09 |
2239 | 3894 | 9.925268 | AACACAAACATAAAGTAACGTAAAGAG | 57.075 | 29.630 | 0.00 | 0.00 | 0.00 | 2.85 |
2244 | 3899 | 9.630310 | CGTAAAACACAAACATAAAGTAACGTA | 57.370 | 29.630 | 0.00 | 0.00 | 0.00 | 3.57 |
2245 | 3900 | 8.174422 | ACGTAAAACACAAACATAAAGTAACGT | 58.826 | 29.630 | 0.00 | 0.00 | 0.00 | 3.99 |
2246 | 3901 | 8.532408 | ACGTAAAACACAAACATAAAGTAACG | 57.468 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
2250 | 3905 | 9.872757 | CATCTACGTAAAACACAAACATAAAGT | 57.127 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
2251 | 3906 | 9.872757 | ACATCTACGTAAAACACAAACATAAAG | 57.127 | 29.630 | 0.00 | 0.00 | 0.00 | 1.85 |
2254 | 3909 | 8.649841 | GCTACATCTACGTAAAACACAAACATA | 58.350 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2255 | 3910 | 7.171848 | TGCTACATCTACGTAAAACACAAACAT | 59.828 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
2256 | 3911 | 6.479331 | TGCTACATCTACGTAAAACACAAACA | 59.521 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
2257 | 3912 | 6.879962 | TGCTACATCTACGTAAAACACAAAC | 58.120 | 36.000 | 0.00 | 0.00 | 0.00 | 2.93 |
2258 | 3913 | 7.661127 | ATGCTACATCTACGTAAAACACAAA | 57.339 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2259 | 3914 | 7.661127 | AATGCTACATCTACGTAAAACACAA | 57.339 | 32.000 | 0.00 | 0.00 | 0.00 | 3.33 |
2260 | 3915 | 8.030692 | AGTAATGCTACATCTACGTAAAACACA | 58.969 | 33.333 | 0.00 | 0.00 | 0.00 | 3.72 |
2261 | 3916 | 8.318876 | CAGTAATGCTACATCTACGTAAAACAC | 58.681 | 37.037 | 0.00 | 0.00 | 0.00 | 3.32 |
2262 | 3917 | 7.009815 | GCAGTAATGCTACATCTACGTAAAACA | 59.990 | 37.037 | 8.13 | 0.00 | 0.00 | 2.83 |
2263 | 3918 | 7.335491 | GCAGTAATGCTACATCTACGTAAAAC | 58.665 | 38.462 | 8.13 | 0.00 | 0.00 | 2.43 |
2264 | 3919 | 6.477688 | GGCAGTAATGCTACATCTACGTAAAA | 59.522 | 38.462 | 15.61 | 0.00 | 34.73 | 1.52 |
2265 | 3920 | 5.981315 | GGCAGTAATGCTACATCTACGTAAA | 59.019 | 40.000 | 15.61 | 0.00 | 34.73 | 2.01 |
2266 | 3921 | 5.526115 | GGCAGTAATGCTACATCTACGTAA | 58.474 | 41.667 | 15.61 | 0.00 | 34.73 | 3.18 |
2267 | 3922 | 4.319984 | CGGCAGTAATGCTACATCTACGTA | 60.320 | 45.833 | 15.61 | 0.00 | 34.73 | 3.57 |
2268 | 3923 | 3.550233 | CGGCAGTAATGCTACATCTACGT | 60.550 | 47.826 | 15.61 | 0.00 | 34.73 | 3.57 |
2269 | 3924 | 2.980476 | CGGCAGTAATGCTACATCTACG | 59.020 | 50.000 | 15.61 | 3.48 | 34.73 | 3.51 |
2270 | 3925 | 3.978687 | ACGGCAGTAATGCTACATCTAC | 58.021 | 45.455 | 15.61 | 0.00 | 34.73 | 2.59 |
2271 | 3926 | 4.665833 | AACGGCAGTAATGCTACATCTA | 57.334 | 40.909 | 15.61 | 0.00 | 34.73 | 1.98 |
2272 | 3927 | 3.543680 | AACGGCAGTAATGCTACATCT | 57.456 | 42.857 | 15.61 | 0.00 | 34.73 | 2.90 |
2273 | 3928 | 4.369182 | ACTAACGGCAGTAATGCTACATC | 58.631 | 43.478 | 15.61 | 0.00 | 34.73 | 3.06 |
2274 | 3929 | 4.402056 | ACTAACGGCAGTAATGCTACAT | 57.598 | 40.909 | 15.61 | 2.14 | 34.73 | 2.29 |
2275 | 3930 | 3.880047 | ACTAACGGCAGTAATGCTACA | 57.120 | 42.857 | 15.61 | 0.00 | 34.73 | 2.74 |
2276 | 3931 | 3.308866 | CCAACTAACGGCAGTAATGCTAC | 59.691 | 47.826 | 15.61 | 0.00 | 34.73 | 3.58 |
2277 | 3932 | 3.527533 | CCAACTAACGGCAGTAATGCTA | 58.472 | 45.455 | 15.61 | 0.00 | 34.73 | 3.49 |
2278 | 3933 | 2.356135 | CCAACTAACGGCAGTAATGCT | 58.644 | 47.619 | 15.61 | 0.00 | 34.73 | 3.79 |
2279 | 3934 | 1.400494 | CCCAACTAACGGCAGTAATGC | 59.600 | 52.381 | 6.61 | 6.61 | 0.00 | 3.56 |
2280 | 3935 | 1.400494 | GCCCAACTAACGGCAGTAATG | 59.600 | 52.381 | 0.00 | 0.00 | 45.01 | 1.90 |
2281 | 3936 | 1.746470 | GCCCAACTAACGGCAGTAAT | 58.254 | 50.000 | 0.00 | 0.00 | 45.01 | 1.89 |
2282 | 3937 | 3.236604 | GCCCAACTAACGGCAGTAA | 57.763 | 52.632 | 0.00 | 0.00 | 45.01 | 2.24 |
2287 | 3942 | 2.489751 | GCATGCCCAACTAACGGC | 59.510 | 61.111 | 6.36 | 0.00 | 45.92 | 5.68 |
2288 | 3943 | 3.196648 | GGCATGCCCAACTAACGG | 58.803 | 61.111 | 27.24 | 0.00 | 0.00 | 4.44 |
2317 | 3972 | 1.414181 | CTACATGCCGAGTCCAGGATT | 59.586 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
2364 | 4020 | 4.679639 | GCAAATCCCTATATGCATGCATGG | 60.680 | 45.833 | 37.43 | 29.61 | 38.63 | 3.66 |
2376 | 4032 | 4.210331 | CAACCTAGCAAGCAAATCCCTAT | 58.790 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
2385 | 4041 | 0.764890 | ACTGACCAACCTAGCAAGCA | 59.235 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
2391 | 4047 | 5.662674 | AGCTAACTAACTGACCAACCTAG | 57.337 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
2416 | 4072 | 1.438710 | CAAGCACGCACGCACTAAC | 60.439 | 57.895 | 0.00 | 0.00 | 0.00 | 2.34 |
2431 | 4087 | 2.100989 | ACGAAGGGAGTAGCTACCAAG | 58.899 | 52.381 | 20.31 | 7.71 | 36.80 | 3.61 |
2448 | 4108 | 6.001460 | AGTTGGGTCATCTATTTTGAAACGA | 58.999 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2498 | 4158 | 5.368989 | ACTCCGTTCCAAAATAGATGATCC | 58.631 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
2499 | 4159 | 9.360093 | CTATACTCCGTTCCAAAATAGATGATC | 57.640 | 37.037 | 0.00 | 0.00 | 0.00 | 2.92 |
2500 | 4160 | 8.871125 | ACTATACTCCGTTCCAAAATAGATGAT | 58.129 | 33.333 | 0.00 | 0.00 | 0.00 | 2.45 |
2501 | 4161 | 8.246430 | ACTATACTCCGTTCCAAAATAGATGA | 57.754 | 34.615 | 0.00 | 0.00 | 0.00 | 2.92 |
2502 | 4162 | 9.408069 | GTACTATACTCCGTTCCAAAATAGATG | 57.592 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
2503 | 4163 | 9.139734 | TGTACTATACTCCGTTCCAAAATAGAT | 57.860 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
2504 | 4164 | 8.523915 | TGTACTATACTCCGTTCCAAAATAGA | 57.476 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
2505 | 4165 | 9.590451 | TTTGTACTATACTCCGTTCCAAAATAG | 57.410 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
2506 | 4166 | 9.590451 | CTTTGTACTATACTCCGTTCCAAAATA | 57.410 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2507 | 4167 | 8.098912 | ACTTTGTACTATACTCCGTTCCAAAAT | 58.901 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2508 | 4168 | 7.444299 | ACTTTGTACTATACTCCGTTCCAAAA | 58.556 | 34.615 | 0.00 | 0.00 | 0.00 | 2.44 |
2509 | 4169 | 6.996509 | ACTTTGTACTATACTCCGTTCCAAA | 58.003 | 36.000 | 0.00 | 0.00 | 0.00 | 3.28 |
2510 | 4170 | 6.594788 | ACTTTGTACTATACTCCGTTCCAA | 57.405 | 37.500 | 0.00 | 0.00 | 0.00 | 3.53 |
2511 | 4171 | 6.392354 | CAACTTTGTACTATACTCCGTTCCA | 58.608 | 40.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2512 | 4172 | 5.809051 | CCAACTTTGTACTATACTCCGTTCC | 59.191 | 44.000 | 0.00 | 0.00 | 0.00 | 3.62 |
2513 | 4173 | 5.809051 | CCCAACTTTGTACTATACTCCGTTC | 59.191 | 44.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2514 | 4174 | 5.246883 | ACCCAACTTTGTACTATACTCCGTT | 59.753 | 40.000 | 0.00 | 0.00 | 0.00 | 4.44 |
2515 | 4175 | 4.774200 | ACCCAACTTTGTACTATACTCCGT | 59.226 | 41.667 | 0.00 | 0.00 | 0.00 | 4.69 |
2516 | 4176 | 5.105635 | TGACCCAACTTTGTACTATACTCCG | 60.106 | 44.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2517 | 4177 | 6.290294 | TGACCCAACTTTGTACTATACTCC | 57.710 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
2518 | 4178 | 7.783042 | AGATGACCCAACTTTGTACTATACTC | 58.217 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
2519 | 4179 | 7.735326 | AGATGACCCAACTTTGTACTATACT | 57.265 | 36.000 | 0.00 | 0.00 | 0.00 | 2.12 |
2524 | 4184 | 8.047310 | CCTAAATAGATGACCCAACTTTGTACT | 58.953 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
2525 | 4185 | 8.044908 | TCCTAAATAGATGACCCAACTTTGTAC | 58.955 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
2526 | 4186 | 8.153221 | TCCTAAATAGATGACCCAACTTTGTA | 57.847 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
2527 | 4187 | 7.027874 | TCCTAAATAGATGACCCAACTTTGT | 57.972 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2528 | 4188 | 7.414098 | CGTTCCTAAATAGATGACCCAACTTTG | 60.414 | 40.741 | 0.00 | 0.00 | 0.00 | 2.77 |
2529 | 4189 | 6.598064 | CGTTCCTAAATAGATGACCCAACTTT | 59.402 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
2530 | 4190 | 6.113411 | CGTTCCTAAATAGATGACCCAACTT | 58.887 | 40.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2531 | 4191 | 5.396436 | CCGTTCCTAAATAGATGACCCAACT | 60.396 | 44.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2532 | 4192 | 4.814771 | CCGTTCCTAAATAGATGACCCAAC | 59.185 | 45.833 | 0.00 | 0.00 | 0.00 | 3.77 |
2548 | 4208 | 0.924823 | TAGCTACTCCCTCCGTTCCT | 59.075 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2634 | 4295 | 6.373779 | CCTCACTTATTACAACACAAGCTTG | 58.626 | 40.000 | 24.84 | 24.84 | 0.00 | 4.01 |
2644 | 4305 | 2.352388 | GCACGGCCTCACTTATTACAA | 58.648 | 47.619 | 0.00 | 0.00 | 0.00 | 2.41 |
2689 | 4354 | 2.109425 | AGCAAACCGGACATAAGGTC | 57.891 | 50.000 | 9.46 | 0.00 | 46.20 | 3.85 |
2691 | 4356 | 2.711542 | AGAAGCAAACCGGACATAAGG | 58.288 | 47.619 | 9.46 | 0.00 | 0.00 | 2.69 |
2695 | 4360 | 2.568623 | AGAAGAAGCAAACCGGACAT | 57.431 | 45.000 | 9.46 | 0.00 | 0.00 | 3.06 |
2701 | 4366 | 2.495084 | AGGTCGAAGAAGAAGCAAACC | 58.505 | 47.619 | 0.00 | 0.00 | 39.69 | 3.27 |
2713 | 4378 | 1.514443 | GCTCGGACGAAGGTCGAAG | 60.514 | 63.158 | 4.40 | 0.00 | 43.74 | 3.79 |
2726 | 4391 | 2.098280 | TCTCTTTCTCTCATTCGCTCGG | 59.902 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2727 | 4392 | 3.064682 | TCTCTCTTTCTCTCATTCGCTCG | 59.935 | 47.826 | 0.00 | 0.00 | 0.00 | 5.03 |
2742 | 4407 | 0.257616 | ACCCTAGCGAGCTCTCTCTT | 59.742 | 55.000 | 10.04 | 0.00 | 37.19 | 2.85 |
2753 | 4422 | 0.463116 | AATGCCGGTAAACCCTAGCG | 60.463 | 55.000 | 1.90 | 0.00 | 38.06 | 4.26 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.