AutoCloner

Multiple sequence alignment - TraesCS6B01G007500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G007500	chr6B	100.000	2927	0	0	1	2927	4886288	4883362	0.000000e+00	5406.0
1	TraesCS6B01G007500	chr6B	89.632	2122	157	25	188	2296	4855732	4857803	0.000000e+00	2641.0
2	TraesCS6B01G007500	chr6B	81.434	781	89	24	82	840	4847177	4847923	3.250000e-164	588.0
3	TraesCS6B01G007500	chr6B	92.593	162	11	1	1	161	4855575	4855736	6.310000e-57	231.0
4	TraesCS6B01G007500	chr6A	88.301	2231	184	45	1	2201	931287	933470	0.000000e+00	2603.0
5	TraesCS6B01G007500	chr6A	84.552	1463	192	21	927	2357	968879	967419	0.000000e+00	1419.0
6	TraesCS6B01G007500	chr6A	89.159	535	42	9	2402	2922	934040	934572	0.000000e+00	652.0
7	TraesCS6B01G007500	chr6A	91.379	174	15	0	2204	2377	933428	933601	3.770000e-59	239.0
8	TraesCS6B01G007500	chr6A	93.617	47	3	0	885	931	968961	968915	1.460000e-08	71.3
9	TraesCS6B01G007500	chr6D	87.648	2032	184	28	355	2377	1850606	1848633	0.000000e+00	2300.0
10	TraesCS6B01G007500	chr6D	90.032	1585	109	26	707	2269	1903690	1902133	0.000000e+00	2006.0
11	TraesCS6B01G007500	chr6D	89.581	1526	127	20	700	2201	1760325	1761842	0.000000e+00	1908.0
12	TraesCS6B01G007500	chr6D	85.369	1449	185	16	927	2350	1800058	1798612	0.000000e+00	1476.0
13	TraesCS6B01G007500	chr6D	84.902	1371	178	19	998	2357	1635740	1637092	0.000000e+00	1358.0
14	TraesCS6B01G007500	chr6D	83.285	1035	129	27	1243	2257	1809421	1808411	0.000000e+00	913.0
15	TraesCS6B01G007500	chr6D	89.808	677	64	4	4	675	1911016	1910340	0.000000e+00	863.0
16	TraesCS6B01G007500	chr6D	90.597	553	45	3	2376	2922	1848007	1847456	0.000000e+00	726.0
17	TraesCS6B01G007500	chr6D	89.350	554	28	12	2376	2922	1762491	1763020	0.000000e+00	667.0
18	TraesCS6B01G007500	chr6D	89.603	529	44	6	2402	2922	1901632	1901107	0.000000e+00	662.0
19	TraesCS6B01G007500	chr6D	84.589	584	56	19	53	635	1634912	1635462	1.530000e-152	549.0
20	TraesCS6B01G007500	chr6D	87.982	441	47	4	3	438	1759623	1760062	1.560000e-142	516.0
21	TraesCS6B01G007500	chr6D	89.783	323	30	2	1	320	1851539	1851217	7.550000e-111	411.0
22	TraesCS6B01G007500	chr6D	92.748	262	17	2	420	679	1760073	1760334	7.660000e-101	377.0
23	TraesCS6B01G007500	chr6D	96.000	175	5	2	2204	2377	1761800	1761973	1.720000e-72	283.0
24	TraesCS6B01G007500	chr6D	95.960	99	3	1	2279	2377	1902181	1902084	3.020000e-35	159.0
25	TraesCS6B01G007500	chr6D	95.652	69	3	0	91	159	1851180	1851112	8.570000e-21	111.0
26	TraesCS6B01G007500	chr6D	93.878	49	3	0	885	933	1800140	1800092	1.130000e-09	75.0
27	TraesCS6B01G007500	chr3B	81.278	908	146	17	1012	1914	779646050	779645162	0.000000e+00	713.0
28	TraesCS6B01G007500	chr3D	81.285	903	143	17	1019	1915	582909598	582908716	0.000000e+00	708.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G007500	chr6B	4883362	4886288	2926	True	5406.000000	5406	100.0000	1	2927	1	chr6B.!!$R1	2926
1	TraesCS6B01G007500	chr6B	4855575	4857803	2228	False	1436.000000	2641	91.1125	1	2296	2	chr6B.!!$F2	2295
2	TraesCS6B01G007500	chr6B	4847177	4847923	746	False	588.000000	588	81.4340	82	840	1	chr6B.!!$F1	758
3	TraesCS6B01G007500	chr6A	931287	934572	3285	False	1164.666667	2603	89.6130	1	2922	3	chr6A.!!$F1	2921
4	TraesCS6B01G007500	chr6A	967419	968961	1542	True	745.150000	1419	89.0845	885	2357	2	chr6A.!!$R1	1472
5	TraesCS6B01G007500	chr6D	1634912	1637092	2180	False	953.500000	1358	84.7455	53	2357	2	chr6D.!!$F1	2304
6	TraesCS6B01G007500	chr6D	1901107	1903690	2583	True	942.333333	2006	91.8650	707	2922	3	chr6D.!!$R5	2215
7	TraesCS6B01G007500	chr6D	1808411	1809421	1010	True	913.000000	913	83.2850	1243	2257	1	chr6D.!!$R1	1014
8	TraesCS6B01G007500	chr6D	1847456	1851539	4083	True	887.000000	2300	90.9200	1	2922	4	chr6D.!!$R4	2921
9	TraesCS6B01G007500	chr6D	1910340	1911016	676	True	863.000000	863	89.8080	4	675	1	chr6D.!!$R2	671
10	TraesCS6B01G007500	chr6D	1798612	1800140	1528	True	775.500000	1476	89.6235	885	2350	2	chr6D.!!$R3	1465
11	TraesCS6B01G007500	chr6D	1759623	1763020	3397	False	750.200000	1908	91.1322	3	2922	5	chr6D.!!$F2	2919
12	TraesCS6B01G007500	chr3B	779645162	779646050	888	True	713.000000	713	81.2780	1012	1914	1	chr3B.!!$R1	902
13	TraesCS6B01G007500	chr3D	582908716	582909598	882	True	708.000000	708	81.2850	1019	1915	1	chr3D.!!$R1	896

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
682	1318	1.001181	GAAAGGTGTGCCACGTAGGTA	59.999	52.381	0.0	0.0	40.61	3.08	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2173	3032	0.581053	CAAAAACTTTTGCGCGCCAT	59.419	45.0	30.77	6.2	40.76	4.4	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
39	44	9.612620	CAATAAAAGTCTTGCTTTACTAGTTGG	57.387	33.333	0.00	0.00	45.91	3.77
123	128	7.343057	GGGAAAGAAACCAAAGGATATTCAGAT	59.657	37.037	0.00	0.00	0.00	2.90
186	191	5.513788	GCTGAATTAGGCATCTCCTTCCATA	60.514	44.000	0.00	0.00	44.75	2.74
368	952	6.227522	TCGTGTCCAAATAATGAAACAGAGA	58.772	36.000	0.00	0.00	0.00	3.10
380	964	1.140312	AACAGAGAAGGGGAGTGCAA	58.860	50.000	0.00	0.00	0.00	4.08
396	980	1.503818	GCAAAAGGGTCTTCGTCGCA	61.504	55.000	0.00	0.00	0.00	5.10
431	1015	2.215196	TGCGTGGTAAGGTTGAGTTTC	58.785	47.619	0.00	0.00	0.00	2.78
467	1081	8.064222	CGATATGCGTAGTTTCAAAATCAGAAT	58.936	33.333	0.00	0.00	34.64	2.40
518	1133	3.496870	GGAAGGATGCAAAGGATACCGAT	60.497	47.826	0.00	0.00	37.17	4.18
519	1134	3.864789	AGGATGCAAAGGATACCGATT	57.135	42.857	0.00	0.00	37.17	3.34
525	1140	4.075682	TGCAAAGGATACCGATTTTGTCA	58.924	39.130	0.00	0.00	34.04	3.58
532	1147	6.122277	AGGATACCGATTTTGTCAATGACAT	58.878	36.000	17.48	1.89	39.11	3.06
650	1285	7.711339	TGGTTTGTTTGGTACCAAATTAATCAC	59.289	33.333	36.07	26.58	45.90	3.06
669	1305	6.884280	ATCACTACCAAGAAAAGAAAGGTG	57.116	37.500	0.00	0.00	33.91	4.00
670	1306	5.751586	TCACTACCAAGAAAAGAAAGGTGT	58.248	37.500	0.00	0.00	33.91	4.16
671	1307	5.588648	TCACTACCAAGAAAAGAAAGGTGTG	59.411	40.000	0.00	0.00	35.08	3.82
672	1308	3.801114	ACCAAGAAAAGAAAGGTGTGC	57.199	42.857	0.00	0.00	0.00	4.57
673	1309	2.430694	ACCAAGAAAAGAAAGGTGTGCC	59.569	45.455	0.00	0.00	0.00	5.01
674	1310	2.430332	CCAAGAAAAGAAAGGTGTGCCA	59.570	45.455	0.00	0.00	37.19	4.92
675	1311	3.447742	CAAGAAAAGAAAGGTGTGCCAC	58.552	45.455	0.00	0.00	37.19	5.01
682	1318	1.001181	GAAAGGTGTGCCACGTAGGTA	59.999	52.381	0.00	0.00	40.61	3.08
686	1322	1.545582	GGTGTGCCACGTAGGTAGTAA	59.454	52.381	0.00	0.00	40.61	2.24
702	1354	4.569564	GGTAGTAAAGATTAAGCACCACGG	59.430	45.833	0.00	0.00	0.00	4.94
724	1376	6.594159	ACGGCATATATTTAGCAGGATACAAC	59.406	38.462	0.00	0.00	41.41	3.32
732	1384	2.561569	AGCAGGATACAACGTATTGCC	58.438	47.619	7.03	0.00	39.66	4.52
746	1398	1.619807	ATTGCCCTGCATCCAAAGCC	61.620	55.000	0.00	0.00	38.76	4.35
843	1497	3.653352	AGGAAGGAAGAGCAACTACCTTT	59.347	43.478	0.00	0.00	40.42	3.11
966	1676	1.901085	CTAGCTTTCTCCGGCCACT	59.099	57.895	2.24	0.00	0.00	4.00
995	1721	3.214328	CAAGCAACCAGTTAACCAGAGT	58.786	45.455	0.88	0.00	0.00	3.24
1036	1767	0.612732	TATGACCGTTCGGGAGGTGT	60.613	55.000	15.66	0.00	41.51	4.16
1041	1772	0.248289	CCGTTCGGGAGGTGTTGTAT	59.752	55.000	3.04	0.00	38.47	2.29
1053	1784	5.080969	AGGTGTTGTATATGTACAGCGTT	57.919	39.130	10.93	0.00	42.80	4.84
1228	1959	3.240134	GAGGCCAACGCTGTCCTCA	62.240	63.158	10.90	0.00	43.42	3.86
1290	2021	1.339291	CTCATCTCCACGCTCTGCATA	59.661	52.381	0.00	0.00	0.00	3.14
1378	2109	4.162690	ACTTCCTCGATGGCGCCC	62.163	66.667	26.77	8.57	37.46	6.13
1438	2169	3.261897	CAGGAGGTATGAAACTGGACTGT	59.738	47.826	0.00	0.00	0.00	3.55
1485	2216	2.204029	TACAGCCCCCTTCCGGTT	60.204	61.111	0.00	0.00	0.00	4.44
1554	2285	0.175531	TGCATCTCCATCGCGAAGAA	59.824	50.000	15.24	5.00	0.00	2.52
1600	2333	5.584253	AGTGCACTACCAAGATACTACTG	57.416	43.478	20.16	0.00	0.00	2.74
1649	2382	9.547753	TTGTATTTGAATCTACTAAGATCTGCC	57.452	33.333	0.00	0.00	41.81	4.85
1675	2415	4.301637	TGCATGCATGATTCAGATTGAC	57.698	40.909	30.64	8.14	0.00	3.18
1680	2423	6.431278	CATGCATGATTCAGATTGACTCTTC	58.569	40.000	22.59	0.00	28.78	2.87
1693	2436	7.763071	CAGATTGACTCTTCACATTGATGTCTA	59.237	37.037	0.00	0.00	32.91	2.59
1701	2444	6.942005	TCTTCACATTGATGTCTAATGGTTGT	59.058	34.615	0.00	0.00	39.39	3.32
1915	2661	1.216678	ACATTCCCAGACCAACCAACA	59.783	47.619	0.00	0.00	0.00	3.33
1958	2705	7.017850	TCCATCCAGGAATCAATCATCATCTTA	59.982	37.037	0.00	0.00	45.65	2.10
2000	2752	3.321111	TGTTAGCCAGATCTACCGGATTC	59.679	47.826	9.46	0.00	34.33	2.52
2083	2838	9.313118	GGAGAAATTAAAAACTGCTTGAGAAAA	57.687	29.630	0.00	0.00	0.00	2.29
2173	3032	0.777446	CCCTTCCTTCTCCCAAACCA	59.223	55.000	0.00	0.00	0.00	3.67
2175	3034	2.450476	CCTTCCTTCTCCCAAACCATG	58.550	52.381	0.00	0.00	0.00	3.66
2189	3048	1.664333	CCATGGCGCGCAAAAGTTT	60.664	52.632	34.42	2.12	0.00	2.66
2210	3069	8.341892	AGTTTTTGGTTTAGATCATCCTTCTC	57.658	34.615	0.00	0.00	0.00	2.87
2216	3075	6.068853	TGGTTTAGATCATCCTTCTCCCAAAT	60.069	38.462	0.00	0.00	0.00	2.32
2276	3135	5.422666	TGTGCATGTTAGACAGAACAAAG	57.577	39.130	0.00	0.00	42.39	2.77
2327	3187	2.594529	ATTGCGCAAACGTTAGACAG	57.405	45.000	28.81	0.00	42.83	3.51
2399	3893	1.762708	TCGGGGATGGAAATTTCTGC	58.237	50.000	17.42	4.43	0.00	4.26
2419	3913	2.093553	GCTTTTAGGGCATGGCAATTCA	60.094	45.455	22.06	0.53	0.00	2.57
2456	3950	9.439500	CATTGATGTAACATGAAAATTCCCTTT	57.561	29.630	0.00	0.00	0.00	3.11
2478	3973	2.268920	GGCATGGCAAGTCCTCGA	59.731	61.111	15.47	0.00	35.26	4.04
2487	3982	2.420129	GGCAAGTCCTCGACATGGTAAT	60.420	50.000	0.00	0.00	32.76	1.89
2491	3986	5.673818	GCAAGTCCTCGACATGGTAATTTTC	60.674	44.000	0.00	0.00	32.76	2.29
2492	3987	5.160607	AGTCCTCGACATGGTAATTTTCA	57.839	39.130	0.00	0.00	34.60	2.69
2493	3988	4.935808	AGTCCTCGACATGGTAATTTTCAC	59.064	41.667	0.00	0.00	34.60	3.18
2495	3990	4.019681	TCCTCGACATGGTAATTTTCACCT	60.020	41.667	0.00	0.00	36.96	4.00
2528	4030	2.835764	ACCAATTCTCCATGCTGCAATT	59.164	40.909	6.36	0.00	0.00	2.32
2591	4093	5.412640	CAGCATGGCAATTTTCTGACAATA	58.587	37.500	0.00	0.00	38.03	1.90
2686	4191	0.035152	TCGCATGGCAATTCTGGAGT	60.035	50.000	0.00	0.00	0.00	3.85
2891	4400	1.147376	CGGGGTGACACCAACTTCA	59.853	57.895	25.75	0.00	41.02	3.02
2898	4407	4.764823	GGGTGACACCAACTTCATTGATAA	59.235	41.667	25.75	0.00	41.02	1.75
2925	4434	2.362077	ACAAGTTTGTCTTCCATGTGGC	59.638	45.455	0.00	0.00	36.50	5.01
2926	4435	1.238439	AGTTTGTCTTCCATGTGGCG	58.762	50.000	0.00	0.00	34.44	5.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
39	44	2.095263	ACATTTCTTATGTGCACCGTGC	60.095	45.455	16.93	16.93	45.29	5.34
57	62	7.093684	ACAACAGTTACAGGTTTTGGTTTACAT	60.094	33.333	0.00	0.00	0.00	2.29
123	128	2.431419	TGGAAGAAACCGTGTCACACTA	59.569	45.455	6.33	0.00	31.34	2.74
180	185	0.899720	ACCGTTTCCGCTCTATGGAA	59.100	50.000	0.00	0.00	43.59	3.53
186	191	1.274167	TCAATGTACCGTTTCCGCTCT	59.726	47.619	0.00	0.00	0.00	4.09
226	231	4.210120	CCTTGTCTTTTCTCGACACAAGAG	59.790	45.833	10.90	0.00	44.47	2.85
227	232	4.119862	CCTTGTCTTTTCTCGACACAAGA	58.880	43.478	10.90	1.05	44.47	3.02
252	257	4.822026	ACTCCTTTCTATTGTCCTCGTTG	58.178	43.478	0.00	0.00	0.00	4.10
335	341	2.380084	TTTGGACACGAGCACCTATC	57.620	50.000	0.00	0.00	0.00	2.08
368	952	0.178961	GACCCTTTTGCACTCCCCTT	60.179	55.000	0.00	0.00	0.00	3.95
380	964	0.179067	TGTTGCGACGAAGACCCTTT	60.179	50.000	0.00	0.00	0.00	3.11
396	980	2.672996	GCAGCGGTCACCCATGTT	60.673	61.111	0.00	0.00	0.00	2.71
410	994	1.878953	AACTCAACCTTACCACGCAG	58.121	50.000	0.00	0.00	0.00	5.18
431	1015	4.352039	ACTACGCATATCGACTGAACAAG	58.648	43.478	1.14	0.00	41.67	3.16
467	1081	1.233950	TGGCGCGCAAAGATTCTTCA	61.234	50.000	34.42	14.50	0.00	3.02
532	1147	5.882040	TGGTACCAAAGAAACCATATGACA	58.118	37.500	13.60	0.00	38.36	3.58
650	1285	4.261614	GGCACACCTTTCTTTTCTTGGTAG	60.262	45.833	0.00	0.00	0.00	3.18
669	1305	3.855689	TCTTTACTACCTACGTGGCAC	57.144	47.619	7.79	7.79	40.22	5.01
670	1306	6.528537	TTAATCTTTACTACCTACGTGGCA	57.471	37.500	0.00	0.00	40.22	4.92
671	1307	5.461407	GCTTAATCTTTACTACCTACGTGGC	59.539	44.000	0.00	0.00	40.22	5.01
672	1308	6.474751	GTGCTTAATCTTTACTACCTACGTGG	59.525	42.308	0.00	0.00	42.93	4.94
673	1309	6.474751	GGTGCTTAATCTTTACTACCTACGTG	59.525	42.308	0.00	0.00	0.00	4.49
674	1310	6.153340	TGGTGCTTAATCTTTACTACCTACGT	59.847	38.462	0.00	0.00	0.00	3.57
675	1311	6.474751	GTGGTGCTTAATCTTTACTACCTACG	59.525	42.308	0.00	0.00	0.00	3.51
682	1318	3.007635	GCCGTGGTGCTTAATCTTTACT	58.992	45.455	0.00	0.00	0.00	2.24
686	1322	2.128771	ATGCCGTGGTGCTTAATCTT	57.871	45.000	0.00	0.00	0.00	2.40
702	1354	7.596749	ACGTTGTATCCTGCTAAATATATGC	57.403	36.000	0.00	0.00	0.00	3.14
724	1376	1.066002	CTTTGGATGCAGGGCAATACG	59.934	52.381	0.00	0.00	43.62	3.06
732	1384	1.173043	TTAACGGCTTTGGATGCAGG	58.827	50.000	0.00	0.00	0.00	4.85
843	1497	4.020662	GGTGCCAAAAATGGATTAGGTTCA	60.021	41.667	0.00	0.00	0.00	3.18
977	1695	3.188667	GCTTACTCTGGTTAACTGGTTGC	59.811	47.826	5.42	4.80	0.00	4.17
995	1721	2.742116	GCCGACCCCTCCATGCTTA	61.742	63.158	0.00	0.00	0.00	3.09
1148	1879	1.056125	ATGGTGGATGGCCGAGATGA	61.056	55.000	0.00	0.00	36.79	2.92
1228	1959	2.348888	CCGGGTAGCGGAGACACTT	61.349	63.158	0.00	0.00	0.00	3.16
1290	2021	3.075005	ATGTAGACGCCGCCCTGT	61.075	61.111	0.00	0.00	0.00	4.00
1438	2169	4.338710	CTCCGGCGGGTTCCCAAA	62.339	66.667	27.98	2.24	33.83	3.28
1485	2216	3.625897	CAGTCCTCCGGCACCACA	61.626	66.667	0.00	0.00	0.00	4.17
1554	2285	7.614974	ACTTACTCCCTAAAGTAGTCGAAGATT	59.385	37.037	0.00	0.00	34.50	2.40
1569	2300	3.461378	TGGTAGTGCACTTACTCCCTA	57.539	47.619	27.06	0.09	28.85	3.53
1600	2333	9.220767	ACAAGTCAAAACTTAATGAGTAGATCC	57.779	33.333	0.00	0.00	43.99	3.36
1628	2361	6.051717	GCAGGCAGATCTTAGTAGATTCAAA	58.948	40.000	0.00	0.00	41.23	2.69
1668	2407	6.709281	AGACATCAATGTGAAGAGTCAATCT	58.291	36.000	0.00	0.00	41.95	2.40
1675	2415	7.120285	ACAACCATTAGACATCAATGTGAAGAG	59.880	37.037	0.00	0.00	41.95	2.85
1680	2423	6.499234	TGACAACCATTAGACATCAATGTG	57.501	37.500	0.00	0.00	41.95	3.21
1693	2436	5.804944	TCCATGACAAATTGACAACCATT	57.195	34.783	0.00	0.00	0.00	3.16
1701	2444	4.024670	TGCATCCATCCATGACAAATTGA	58.975	39.130	0.00	0.00	0.00	2.57
1915	2661	1.476007	GGATCAGGCTAGGCGGTGAT	61.476	60.000	17.66	17.66	36.21	3.06
1958	2705	2.105006	AGCAACACGAGCATTGAGAT	57.895	45.000	0.00	0.00	0.00	2.75
2000	2752	2.112475	TTTTGAAATGGCACGTCACG	57.888	45.000	0.00	0.00	0.00	4.35
2022	2774	6.978659	TCCAAAACAACATTGCGTTACAAATA	59.021	30.769	0.00	0.00	42.86	1.40
2083	2838	4.570369	CCAAACGAAGGAGCAACAAATTTT	59.430	37.500	0.00	0.00	0.00	1.82
2173	3032	0.581053	CAAAAACTTTTGCGCGCCAT	59.419	45.000	30.77	6.20	40.76	4.40
2175	3034	1.275361	CCAAAAACTTTTGCGCGCC	59.725	52.632	30.77	11.42	44.62	6.53
2179	3038	6.820470	TGATCTAAACCAAAAACTTTTGCG	57.180	33.333	9.04	5.86	44.62	4.85
2189	3048	5.252863	TGGGAGAAGGATGATCTAAACCAAA	59.747	40.000	0.00	0.00	0.00	3.28
2216	3075	2.280797	AACTTCTGCGCGCCAAGA	60.281	55.556	34.06	26.54	0.00	3.02
2276	3135	0.597377	CAAGAACTTTTGCGTGCCCC	60.597	55.000	0.00	0.00	0.00	5.80
2357	3217	1.382833	GGAGTGGGGAGAGGGGTAC	60.383	68.421	0.00	0.00	0.00	3.34
2399	3893	3.055963	TGTGAATTGCCATGCCCTAAAAG	60.056	43.478	0.00	0.00	0.00	2.27
2456	3950	1.077501	GGACTTGCCATGCCAGCTA	60.078	57.895	0.00	0.00	36.34	3.32
2648	4153	8.918658	CCATGCGAGATAAATAAATTTTCCATG	58.081	33.333	0.00	3.00	0.00	3.66
2653	4158	8.891671	ATTGCCATGCGAGATAAATAAATTTT	57.108	26.923	0.00	0.00	0.00	1.82
2662	4167	2.880268	CCAGAATTGCCATGCGAGATAA	59.120	45.455	0.00	0.00	0.00	1.75
2878	4387	5.301555	TCGTTATCAATGAAGTTGGTGTCA	58.698	37.500	0.00	0.00	38.39	3.58

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.