Multiple sequence alignment - TraesCS6B01G007200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G007200 chr6B 100.000 2922 0 0 1 2922 4855516 4858437 0.000000e+00 5397.0
1 TraesCS6B01G007200 chr6B 89.632 2122 157 25 217 2288 4886101 4883993 0.000000e+00 2641.0
2 TraesCS6B01G007200 chr6B 90.090 222 20 2 1 221 4886348 4886128 1.330000e-73 287.0
3 TraesCS6B01G007200 chr6A 89.500 2019 150 45 216 2194 931474 933470 0.000000e+00 2497.0
4 TraesCS6B01G007200 chr6A 84.094 1402 188 24 919 2288 968879 967481 0.000000e+00 1321.0
5 TraesCS6B01G007200 chr6A 84.989 453 47 8 2472 2920 961421 960986 9.610000e-120 440.0
6 TraesCS6B01G007200 chr6A 87.892 223 24 3 1 221 931227 931448 2.890000e-65 259.0
7 TraesCS6B01G007200 chr6A 91.489 47 4 0 877 923 968961 968915 6.760000e-07 65.8
8 TraesCS6B01G007200 chr6D 89.793 1930 146 30 374 2288 1850606 1848713 0.000000e+00 2425.0
9 TraesCS6B01G007200 chr6D 89.294 1784 149 26 439 2194 1760073 1761842 0.000000e+00 2198.0
10 TraesCS6B01G007200 chr6D 90.869 1588 87 31 703 2262 1903690 1902133 0.000000e+00 2076.0
11 TraesCS6B01G007200 chr6D 85.169 1389 177 23 919 2281 1800058 1798673 0.000000e+00 1397.0
12 TraesCS6B01G007200 chr6D 85.431 1311 165 17 991 2288 1635733 1637030 0.000000e+00 1339.0
13 TraesCS6B01G007200 chr6D 83.301 1030 131 26 1243 2250 1809421 1808411 0.000000e+00 911.0
14 TraesCS6B01G007200 chr6D 86.965 491 54 4 216 696 1910830 1910340 7.120000e-151 544.0
15 TraesCS6B01G007200 chr6D 85.680 412 36 7 2493 2894 1785097 1784699 2.100000e-111 412.0
16 TraesCS6B01G007200 chr6D 90.135 223 20 2 1 221 1851598 1851376 3.680000e-74 289.0
17 TraesCS6B01G007200 chr6D 85.938 256 32 2 216 467 1635045 1635300 1.330000e-68 270.0
18 TraesCS6B01G007200 chr6D 94.483 145 8 0 153 297 1851178 1851034 1.050000e-54 224.0
19 TraesCS6B01G007200 chr6D 77.882 425 42 23 510 923 1635316 1635699 1.760000e-52 217.0
20 TraesCS6B01G007200 chr6D 83.582 134 12 7 216 339 1851350 1851217 1.840000e-22 117.0
21 TraesCS6B01G007200 chr6D 91.837 49 4 0 877 925 1800140 1800092 5.230000e-08 69.4
22 TraesCS6B01G007200 chr3D 82.614 903 132 19 1017 1911 582909600 582908715 0.000000e+00 774.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G007200 chr6B 4855516 4858437 2921 False 5397.000000 5397 100.000000 1 2922 1 chr6B.!!$F1 2921
1 TraesCS6B01G007200 chr6B 4883993 4886348 2355 True 1464.000000 2641 89.861000 1 2288 2 chr6B.!!$R1 2287
2 TraesCS6B01G007200 chr6A 931227 933470 2243 False 1378.000000 2497 88.696000 1 2194 2 chr6A.!!$F1 2193
3 TraesCS6B01G007200 chr6A 967481 968961 1480 True 693.400000 1321 87.791500 877 2288 2 chr6A.!!$R2 1411
4 TraesCS6B01G007200 chr6D 1760073 1761842 1769 False 2198.000000 2198 89.294000 439 2194 1 chr6D.!!$F1 1755
5 TraesCS6B01G007200 chr6D 1902133 1903690 1557 True 2076.000000 2076 90.869000 703 2262 1 chr6D.!!$R3 1559
6 TraesCS6B01G007200 chr6D 1808411 1809421 1010 True 911.000000 911 83.301000 1243 2250 1 chr6D.!!$R2 1007
7 TraesCS6B01G007200 chr6D 1848713 1851598 2885 True 763.750000 2425 89.498250 1 2288 4 chr6D.!!$R6 2287
8 TraesCS6B01G007200 chr6D 1798673 1800140 1467 True 733.200000 1397 88.503000 877 2281 2 chr6D.!!$R5 1404
9 TraesCS6B01G007200 chr6D 1635045 1637030 1985 False 608.666667 1339 83.083667 216 2288 3 chr6D.!!$F2 2072
10 TraesCS6B01G007200 chr3D 582908715 582909600 885 True 774.000000 774 82.614000 1017 1911 1 chr3D.!!$R1 894

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
330 376 0.192064 GATGGGGAGATCAGAGGGGA 59.808 60.0 0.0 0.0 0.0 4.81 F
399 1021 0.402121 AAAAGAGGAGGGGAGTGCAC 59.598 55.0 9.4 9.4 0.0 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1915 2677 0.400381 TGGATGGATCAGGCTAGGCA 60.400 55.0 19.70 0.00 0.0 4.75 R
2262 3186 0.936600 CTTTTGGGCGCCTTTTGTTG 59.063 50.0 28.56 7.19 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 69 4.523083 GGTATGTCCTTATGTGGCTTGAA 58.477 43.478 0.00 0.00 0.00 2.69
76 79 5.990996 CCTTATGTGGCTTGAAACAACAATT 59.009 36.000 0.00 0.00 0.00 2.32
90 94 8.868916 TGAAACAACAATTAAAAGTCTTGCTTC 58.131 29.630 0.00 0.00 36.17 3.86
104 108 3.067601 TCTTGCTTCACTACTTGACACGA 59.932 43.478 0.00 0.00 32.26 4.35
149 153 0.586319 CCTGTAACTGTTGTGCACCG 59.414 55.000 15.69 2.64 0.00 4.94
151 155 2.143122 CTGTAACTGTTGTGCACCGAT 58.857 47.619 15.69 0.00 0.00 4.18
181 185 6.784969 TGGGAAAGAAACCAAAGGATATTCAA 59.215 34.615 0.00 0.00 32.89 2.69
225 260 0.678048 GCCGACAAGGGAGCAGAAAT 60.678 55.000 0.00 0.00 41.48 2.17
267 302 0.512952 GTCATGTGCCTTGTGTCGAC 59.487 55.000 9.11 9.11 0.00 4.20
272 307 2.020720 TGTGCCTTGTGTCGACAAAAT 58.979 42.857 21.13 0.00 41.62 1.82
275 321 3.002862 GTGCCTTGTGTCGACAAAATACA 59.997 43.478 21.13 18.08 41.62 2.29
280 326 6.055231 CTTGTGTCGACAAAATACAAGGAA 57.945 37.500 26.32 4.81 41.62 3.36
328 374 0.193069 AGGATGGGGAGATCAGAGGG 59.807 60.000 0.00 0.00 0.00 4.30
330 376 0.192064 GATGGGGAGATCAGAGGGGA 59.808 60.000 0.00 0.00 0.00 4.81
382 1004 5.457140 GTGCTCGTGTCCAAATAATGAAAA 58.543 37.500 0.00 0.00 0.00 2.29
399 1021 0.402121 AAAAGAGGAGGGGAGTGCAC 59.598 55.000 9.40 9.40 0.00 4.57
402 1024 0.548682 AGAGGAGGGGAGTGCACAAT 60.549 55.000 21.04 0.00 0.00 2.71
551 1179 1.741327 TACGGAGCTGGGCGATAACC 61.741 60.000 0.00 0.00 0.00 2.85
584 1212 6.612049 TGGTTTCTTTGGTACCAAATTAAGGT 59.388 34.615 34.40 7.56 43.78 3.50
741 1409 7.932160 CAATGTATTGTGCTGCATCCGAAGG 62.932 48.000 5.27 0.00 40.34 3.46
880 1564 5.222130 ACCTCATTAAACATTGACCAGACCT 60.222 40.000 0.00 0.00 0.00 3.85
973 1711 4.856801 ACCGGCGGTGCATCCATC 62.857 66.667 33.71 0.00 32.98 3.51
975 1713 4.854924 CGGCGGTGCATCCATCCA 62.855 66.667 0.00 0.00 35.57 3.41
976 1714 2.203394 GGCGGTGCATCCATCCAT 60.203 61.111 0.00 0.00 35.57 3.41
977 1715 1.829533 GGCGGTGCATCCATCCATT 60.830 57.895 0.00 0.00 35.57 3.16
980 1718 1.612676 CGGTGCATCCATCCATTCAT 58.387 50.000 0.00 0.00 35.57 2.57
987 1725 3.005472 GCATCCATCCATTCATCCAGTTG 59.995 47.826 0.00 0.00 0.00 3.16
1010 1750 1.000396 GAGCAAGCATGGAGGGGTT 60.000 57.895 0.00 0.00 0.00 4.11
1309 2052 1.153647 CAAGGCGGCGTCTACATCA 60.154 57.895 17.05 0.00 0.00 3.07
1394 2137 1.439679 GCCGGTAAGTTGGTCTTCAG 58.560 55.000 1.90 0.00 37.56 3.02
1582 2325 3.757493 CGACTACTTCAGGGAGTAAGTGT 59.243 47.826 0.00 0.00 36.62 3.55
1590 2335 4.597004 TCAGGGAGTAAGTGTACTACTGG 58.403 47.826 13.63 1.88 40.62 4.00
1664 2419 2.224597 ACCTGCATGCATGATTCGGATA 60.225 45.455 30.64 4.35 0.00 2.59
1668 2427 3.499537 TGCATGCATGATTCGGATAGAAC 59.500 43.478 30.64 7.94 42.39 3.01
1892 2654 1.949525 AGATGTGGATGCGCAAATACC 59.050 47.619 17.11 16.21 0.00 2.73
1915 2677 1.525995 CAGGCCAACCAACGTCACT 60.526 57.895 5.01 0.00 39.06 3.41
1978 2746 3.501828 TCAATGCTCGTGTTGCTTGTTAT 59.498 39.130 0.00 0.00 0.00 1.89
2142 2920 1.559682 ACATCATTGCCTACCTCGGTT 59.440 47.619 0.00 0.00 0.00 4.44
2148 2926 1.061546 TGCCTACCTCGGTTTCCTTT 58.938 50.000 0.00 0.00 0.00 3.11
2167 3045 2.133858 TCCTTCCTTCTCCCAAACCT 57.866 50.000 0.00 0.00 0.00 3.50
2172 3051 0.537371 CCTTCTCCCAAACCTTGCGT 60.537 55.000 0.00 0.00 0.00 5.24
2182 3061 1.921243 AACCTTGCGTGCAAAAGTTC 58.079 45.000 8.80 0.00 35.33 3.01
2203 3082 7.108847 AGTTCTTGGTTTAGATCATCCTTCTG 58.891 38.462 0.00 0.00 0.00 3.02
2209 3088 5.163612 GGTTTAGATCATCCTTCTGCCAAAC 60.164 44.000 0.00 0.00 0.00 2.93
2224 3103 1.880796 AAACCTTGGCGCGCAAAAC 60.881 52.632 34.42 16.23 0.00 2.43
2232 3111 2.648318 GCGCGCAAAACTTCTTGGC 61.648 57.895 29.10 0.00 0.00 4.52
2251 3130 8.729805 TCTTGGCTTTGATTTTAAAATTGTGT 57.270 26.923 14.45 0.00 0.00 3.72
2272 3196 3.685836 ACGTTAGACACAACAAAAGGC 57.314 42.857 0.00 0.00 0.00 4.35
2273 3197 2.031191 ACGTTAGACACAACAAAAGGCG 59.969 45.455 0.00 0.00 0.00 5.52
2274 3198 2.381589 GTTAGACACAACAAAAGGCGC 58.618 47.619 0.00 0.00 0.00 6.53
2276 3200 1.299850 GACACAACAAAAGGCGCCC 60.300 57.895 26.15 5.07 0.00 6.13
2277 3201 2.010582 GACACAACAAAAGGCGCCCA 62.011 55.000 26.15 0.00 0.00 5.36
2282 3206 0.539518 AACAAAAGGCGCCCAAAAGT 59.460 45.000 26.15 13.28 0.00 2.66
2284 3208 1.217001 CAAAAGGCGCCCAAAAGTTC 58.783 50.000 26.15 0.00 0.00 3.01
2287 3211 0.389025 AAGGCGCCCAAAAGTTCTTG 59.611 50.000 26.15 0.00 0.00 3.02
2288 3212 0.467290 AGGCGCCCAAAAGTTCTTGA 60.467 50.000 26.15 0.00 0.00 3.02
2289 3213 0.603065 GGCGCCCAAAAGTTCTTGAT 59.397 50.000 18.11 0.00 0.00 2.57
2290 3214 1.669795 GGCGCCCAAAAGTTCTTGATG 60.670 52.381 18.11 0.00 0.00 3.07
2291 3215 1.669795 GCGCCCAAAAGTTCTTGATGG 60.670 52.381 0.00 9.35 0.00 3.51
2292 3216 1.885887 CGCCCAAAAGTTCTTGATGGA 59.114 47.619 14.93 0.00 32.82 3.41
2293 3217 2.351738 CGCCCAAAAGTTCTTGATGGAC 60.352 50.000 14.93 6.57 32.82 4.02
2294 3218 2.893489 GCCCAAAAGTTCTTGATGGACT 59.107 45.455 14.93 0.00 32.82 3.85
2295 3219 3.321968 GCCCAAAAGTTCTTGATGGACTT 59.678 43.478 14.93 0.00 32.82 3.01
2296 3220 4.202253 GCCCAAAAGTTCTTGATGGACTTT 60.202 41.667 14.93 0.00 32.82 2.66
2297 3221 5.684813 GCCCAAAAGTTCTTGATGGACTTTT 60.685 40.000 10.67 10.67 40.06 2.27
2300 3224 7.832503 CAAAAGTTCTTGATGGACTTTTGTT 57.167 32.000 25.34 3.84 45.60 2.83
2301 3225 7.678226 CAAAAGTTCTTGATGGACTTTTGTTG 58.322 34.615 25.34 10.62 45.60 3.33
2302 3226 6.530019 AAGTTCTTGATGGACTTTTGTTGT 57.470 33.333 0.00 0.00 0.00 3.32
2303 3227 5.894807 AGTTCTTGATGGACTTTTGTTGTG 58.105 37.500 0.00 0.00 0.00 3.33
2304 3228 4.916983 TCTTGATGGACTTTTGTTGTGG 57.083 40.909 0.00 0.00 0.00 4.17
2305 3229 4.277476 TCTTGATGGACTTTTGTTGTGGT 58.723 39.130 0.00 0.00 0.00 4.16
2306 3230 4.709397 TCTTGATGGACTTTTGTTGTGGTT 59.291 37.500 0.00 0.00 0.00 3.67
2307 3231 5.186797 TCTTGATGGACTTTTGTTGTGGTTT 59.813 36.000 0.00 0.00 0.00 3.27
2308 3232 5.413309 TGATGGACTTTTGTTGTGGTTTT 57.587 34.783 0.00 0.00 0.00 2.43
2309 3233 5.415221 TGATGGACTTTTGTTGTGGTTTTC 58.585 37.500 0.00 0.00 0.00 2.29
2310 3234 5.186797 TGATGGACTTTTGTTGTGGTTTTCT 59.813 36.000 0.00 0.00 0.00 2.52
2311 3235 4.815269 TGGACTTTTGTTGTGGTTTTCTG 58.185 39.130 0.00 0.00 0.00 3.02
2312 3236 4.282195 TGGACTTTTGTTGTGGTTTTCTGT 59.718 37.500 0.00 0.00 0.00 3.41
2313 3237 5.221541 TGGACTTTTGTTGTGGTTTTCTGTT 60.222 36.000 0.00 0.00 0.00 3.16
2314 3238 5.699001 GGACTTTTGTTGTGGTTTTCTGTTT 59.301 36.000 0.00 0.00 0.00 2.83
2315 3239 6.203915 GGACTTTTGTTGTGGTTTTCTGTTTT 59.796 34.615 0.00 0.00 0.00 2.43
2316 3240 7.184800 ACTTTTGTTGTGGTTTTCTGTTTTC 57.815 32.000 0.00 0.00 0.00 2.29
2317 3241 6.989759 ACTTTTGTTGTGGTTTTCTGTTTTCT 59.010 30.769 0.00 0.00 0.00 2.52
2318 3242 6.777526 TTTGTTGTGGTTTTCTGTTTTCTG 57.222 33.333 0.00 0.00 0.00 3.02
2319 3243 5.713792 TGTTGTGGTTTTCTGTTTTCTGA 57.286 34.783 0.00 0.00 0.00 3.27
2320 3244 5.708948 TGTTGTGGTTTTCTGTTTTCTGAG 58.291 37.500 0.00 0.00 0.00 3.35
2321 3245 5.242838 TGTTGTGGTTTTCTGTTTTCTGAGT 59.757 36.000 0.00 0.00 0.00 3.41
2322 3246 5.560966 TGTGGTTTTCTGTTTTCTGAGTC 57.439 39.130 0.00 0.00 0.00 3.36
2323 3247 5.253330 TGTGGTTTTCTGTTTTCTGAGTCT 58.747 37.500 0.00 0.00 0.00 3.24
2324 3248 5.354234 TGTGGTTTTCTGTTTTCTGAGTCTC 59.646 40.000 0.00 0.00 0.00 3.36
2325 3249 5.586643 GTGGTTTTCTGTTTTCTGAGTCTCT 59.413 40.000 0.65 0.00 0.00 3.10
2326 3250 6.094186 GTGGTTTTCTGTTTTCTGAGTCTCTT 59.906 38.462 0.65 0.00 0.00 2.85
2327 3251 6.659242 TGGTTTTCTGTTTTCTGAGTCTCTTT 59.341 34.615 0.65 0.00 0.00 2.52
2328 3252 7.827236 TGGTTTTCTGTTTTCTGAGTCTCTTTA 59.173 33.333 0.65 0.00 0.00 1.85
2329 3253 8.674607 GGTTTTCTGTTTTCTGAGTCTCTTTAA 58.325 33.333 0.65 0.00 0.00 1.52
2330 3254 9.491934 GTTTTCTGTTTTCTGAGTCTCTTTAAC 57.508 33.333 0.65 1.94 0.00 2.01
2331 3255 9.449719 TTTTCTGTTTTCTGAGTCTCTTTAACT 57.550 29.630 0.65 0.00 0.00 2.24
2332 3256 9.449719 TTTCTGTTTTCTGAGTCTCTTTAACTT 57.550 29.630 0.65 0.00 0.00 2.66
2333 3257 9.449719 TTCTGTTTTCTGAGTCTCTTTAACTTT 57.550 29.630 0.65 0.00 0.00 2.66
2334 3258 9.449719 TCTGTTTTCTGAGTCTCTTTAACTTTT 57.550 29.630 0.65 0.00 0.00 2.27
2368 3292 9.686683 TTCTTTTTCCCATTGTTTTATTTTCCA 57.313 25.926 0.00 0.00 0.00 3.53
2369 3293 9.859152 TCTTTTTCCCATTGTTTTATTTTCCAT 57.141 25.926 0.00 0.00 0.00 3.41
2371 3295 8.628630 TTTTCCCATTGTTTTATTTTCCATCC 57.371 30.769 0.00 0.00 0.00 3.51
2372 3296 5.971763 TCCCATTGTTTTATTTTCCATCCG 58.028 37.500 0.00 0.00 0.00 4.18
2373 3297 5.482175 TCCCATTGTTTTATTTTCCATCCGT 59.518 36.000 0.00 0.00 0.00 4.69
2374 3298 6.014156 TCCCATTGTTTTATTTTCCATCCGTT 60.014 34.615 0.00 0.00 0.00 4.44
2375 3299 6.652900 CCCATTGTTTTATTTTCCATCCGTTT 59.347 34.615 0.00 0.00 0.00 3.60
2376 3300 7.174080 CCCATTGTTTTATTTTCCATCCGTTTT 59.826 33.333 0.00 0.00 0.00 2.43
2377 3301 8.563732 CCATTGTTTTATTTTCCATCCGTTTTT 58.436 29.630 0.00 0.00 0.00 1.94
2380 3304 9.819267 TTGTTTTATTTTCCATCCGTTTTTAGT 57.181 25.926 0.00 0.00 0.00 2.24
2381 3305 9.819267 TGTTTTATTTTCCATCCGTTTTTAGTT 57.181 25.926 0.00 0.00 0.00 2.24
2413 3337 8.631480 ATTCTATGTTTCTTTACCGGTTTTCT 57.369 30.769 15.04 0.00 0.00 2.52
2414 3338 8.454570 TTCTATGTTTCTTTACCGGTTTTCTT 57.545 30.769 15.04 0.00 0.00 2.52
2415 3339 8.091385 TCTATGTTTCTTTACCGGTTTTCTTC 57.909 34.615 15.04 0.00 0.00 2.87
2416 3340 6.702716 ATGTTTCTTTACCGGTTTTCTTCA 57.297 33.333 15.04 5.39 0.00 3.02
2417 3341 6.126568 TGTTTCTTTACCGGTTTTCTTCAG 57.873 37.500 15.04 0.00 0.00 3.02
2418 3342 5.648960 TGTTTCTTTACCGGTTTTCTTCAGT 59.351 36.000 15.04 0.00 0.00 3.41
2419 3343 6.151480 TGTTTCTTTACCGGTTTTCTTCAGTT 59.849 34.615 15.04 0.00 0.00 3.16
2420 3344 6.762702 TTCTTTACCGGTTTTCTTCAGTTT 57.237 33.333 15.04 0.00 0.00 2.66
2421 3345 6.762702 TCTTTACCGGTTTTCTTCAGTTTT 57.237 33.333 15.04 0.00 0.00 2.43
2422 3346 7.862512 TCTTTACCGGTTTTCTTCAGTTTTA 57.137 32.000 15.04 0.00 0.00 1.52
2423 3347 7.696755 TCTTTACCGGTTTTCTTCAGTTTTAC 58.303 34.615 15.04 0.00 0.00 2.01
2424 3348 4.541085 ACCGGTTTTCTTCAGTTTTACG 57.459 40.909 0.00 0.00 0.00 3.18
2425 3349 3.313249 ACCGGTTTTCTTCAGTTTTACGG 59.687 43.478 0.00 0.00 42.88 4.02
2426 3350 3.313249 CCGGTTTTCTTCAGTTTTACGGT 59.687 43.478 0.00 0.00 33.48 4.83
2427 3351 4.201940 CCGGTTTTCTTCAGTTTTACGGTT 60.202 41.667 0.00 0.00 33.48 4.44
2428 3352 5.334319 CGGTTTTCTTCAGTTTTACGGTTT 58.666 37.500 0.00 0.00 0.00 3.27
2429 3353 5.228427 CGGTTTTCTTCAGTTTTACGGTTTG 59.772 40.000 0.00 0.00 0.00 2.93
2430 3354 5.005012 GGTTTTCTTCAGTTTTACGGTTTGC 59.995 40.000 0.00 0.00 0.00 3.68
2431 3355 3.974871 TCTTCAGTTTTACGGTTTGCC 57.025 42.857 0.00 0.00 0.00 4.52
2432 3356 3.280295 TCTTCAGTTTTACGGTTTGCCA 58.720 40.909 0.00 0.00 34.09 4.92
2433 3357 3.886505 TCTTCAGTTTTACGGTTTGCCAT 59.113 39.130 0.00 0.00 34.09 4.40
2434 3358 4.339814 TCTTCAGTTTTACGGTTTGCCATT 59.660 37.500 0.00 0.00 34.09 3.16
2435 3359 4.657436 TCAGTTTTACGGTTTGCCATTT 57.343 36.364 0.00 0.00 34.09 2.32
2436 3360 5.012328 TCAGTTTTACGGTTTGCCATTTT 57.988 34.783 0.00 0.00 34.09 1.82
2437 3361 5.420409 TCAGTTTTACGGTTTGCCATTTTT 58.580 33.333 0.00 0.00 34.09 1.94
2527 3451 6.951643 TGTCATGAAGATTCTATGAAATGCG 58.048 36.000 0.00 0.00 33.10 4.73
2528 3452 6.539826 TGTCATGAAGATTCTATGAAATGCGT 59.460 34.615 0.00 0.00 33.10 5.24
2529 3453 6.849811 GTCATGAAGATTCTATGAAATGCGTG 59.150 38.462 0.00 0.00 33.10 5.34
2530 3454 6.762661 TCATGAAGATTCTATGAAATGCGTGA 59.237 34.615 0.00 0.00 0.00 4.35
2531 3455 6.983474 TGAAGATTCTATGAAATGCGTGAA 57.017 33.333 0.00 0.00 0.00 3.18
2532 3456 6.775088 TGAAGATTCTATGAAATGCGTGAAC 58.225 36.000 0.00 0.00 0.00 3.18
2533 3457 6.371271 TGAAGATTCTATGAAATGCGTGAACA 59.629 34.615 0.00 0.00 0.00 3.18
2534 3458 6.741992 AGATTCTATGAAATGCGTGAACAA 57.258 33.333 0.00 0.00 0.00 2.83
2535 3459 7.325660 AGATTCTATGAAATGCGTGAACAAT 57.674 32.000 0.00 0.00 0.00 2.71
2536 3460 7.765307 AGATTCTATGAAATGCGTGAACAATT 58.235 30.769 0.00 0.00 0.00 2.32
2537 3461 8.246180 AGATTCTATGAAATGCGTGAACAATTT 58.754 29.630 0.00 0.00 0.00 1.82
2538 3462 8.761575 ATTCTATGAAATGCGTGAACAATTTT 57.238 26.923 0.00 0.00 0.00 1.82
2539 3463 8.586570 TTCTATGAAATGCGTGAACAATTTTT 57.413 26.923 0.00 0.00 0.00 1.94
2540 3464 8.005662 TCTATGAAATGCGTGAACAATTTTTG 57.994 30.769 0.00 0.00 0.00 2.44
2541 3465 4.830912 TGAAATGCGTGAACAATTTTTGC 58.169 34.783 0.00 0.00 0.00 3.68
2542 3466 4.330894 TGAAATGCGTGAACAATTTTTGCA 59.669 33.333 0.00 0.00 35.10 4.08
2543 3467 5.007430 TGAAATGCGTGAACAATTTTTGCAT 59.993 32.000 0.00 0.00 42.83 3.96
2544 3468 3.856104 TGCGTGAACAATTTTTGCATG 57.144 38.095 0.00 0.00 0.00 4.06
2545 3469 2.543012 TGCGTGAACAATTTTTGCATGG 59.457 40.909 0.00 0.00 0.00 3.66
2546 3470 2.662520 GCGTGAACAATTTTTGCATGGC 60.663 45.455 0.00 0.00 0.00 4.40
2547 3471 2.410006 CGTGAACAATTTTTGCATGGCG 60.410 45.455 0.00 0.00 0.00 5.69
2548 3472 2.799412 GTGAACAATTTTTGCATGGCGA 59.201 40.909 0.00 0.00 0.00 5.54
2549 3473 3.058450 TGAACAATTTTTGCATGGCGAG 58.942 40.909 0.00 0.00 0.00 5.03
2550 3474 3.243670 TGAACAATTTTTGCATGGCGAGA 60.244 39.130 0.00 0.00 0.00 4.04
2551 3475 3.383620 ACAATTTTTGCATGGCGAGAA 57.616 38.095 0.00 0.00 0.00 2.87
2552 3476 3.726607 ACAATTTTTGCATGGCGAGAAA 58.273 36.364 0.00 0.00 0.00 2.52
2553 3477 3.494251 ACAATTTTTGCATGGCGAGAAAC 59.506 39.130 0.00 0.00 0.00 2.78
2554 3478 2.147436 TTTTTGCATGGCGAGAAACC 57.853 45.000 0.00 0.00 0.00 3.27
2555 3479 1.327303 TTTTGCATGGCGAGAAACCT 58.673 45.000 0.00 0.00 0.00 3.50
2556 3480 1.327303 TTTGCATGGCGAGAAACCTT 58.673 45.000 0.00 0.00 0.00 3.50
2557 3481 1.327303 TTGCATGGCGAGAAACCTTT 58.673 45.000 0.00 0.00 0.00 3.11
2558 3482 1.327303 TGCATGGCGAGAAACCTTTT 58.673 45.000 0.00 0.00 0.00 2.27
2559 3483 1.686052 TGCATGGCGAGAAACCTTTTT 59.314 42.857 0.00 0.00 0.00 1.94
2691 3615 9.513554 GCGAACGAATTAACTAATATTCTTAGC 57.486 33.333 0.00 0.00 0.00 3.09
2703 3627 9.057089 ACTAATATTCTTAGCAACTAATGTGCC 57.943 33.333 0.00 0.00 0.00 5.01
2704 3628 4.882671 ATTCTTAGCAACTAATGTGCCG 57.117 40.909 0.00 0.00 0.00 5.69
2705 3629 2.627945 TCTTAGCAACTAATGTGCCGG 58.372 47.619 0.00 0.00 0.00 6.13
2706 3630 1.064060 CTTAGCAACTAATGTGCCGGC 59.936 52.381 22.73 22.73 0.00 6.13
2707 3631 0.746563 TAGCAACTAATGTGCCGGCC 60.747 55.000 26.77 16.24 0.00 6.13
2708 3632 3.063743 GCAACTAATGTGCCGGCCC 62.064 63.158 26.77 14.61 0.00 5.80
2709 3633 1.677300 CAACTAATGTGCCGGCCCA 60.677 57.895 26.77 21.41 0.00 5.36
2710 3634 1.378514 AACTAATGTGCCGGCCCAG 60.379 57.895 26.77 15.49 0.00 4.45
2711 3635 2.137177 AACTAATGTGCCGGCCCAGT 62.137 55.000 26.77 21.86 0.00 4.00
2712 3636 1.268992 ACTAATGTGCCGGCCCAGTA 61.269 55.000 26.77 21.79 0.00 2.74
2713 3637 0.107410 CTAATGTGCCGGCCCAGTAA 60.107 55.000 26.77 7.23 0.00 2.24
2714 3638 0.393267 TAATGTGCCGGCCCAGTAAC 60.393 55.000 26.77 15.11 0.00 2.50
2715 3639 3.969250 ATGTGCCGGCCCAGTAACG 62.969 63.158 26.77 0.00 0.00 3.18
2720 3644 4.728102 CGGCCCAGTAACGCGTCA 62.728 66.667 14.44 0.00 0.00 4.35
2721 3645 3.116531 GGCCCAGTAACGCGTCAC 61.117 66.667 14.44 8.92 0.00 3.67
2722 3646 2.356553 GCCCAGTAACGCGTCACA 60.357 61.111 16.25 0.00 0.00 3.58
2723 3647 2.664436 GCCCAGTAACGCGTCACAC 61.664 63.158 16.25 12.52 0.00 3.82
2724 3648 1.300311 CCCAGTAACGCGTCACACA 60.300 57.895 16.25 0.00 0.00 3.72
2725 3649 1.282248 CCCAGTAACGCGTCACACAG 61.282 60.000 16.25 9.35 0.00 3.66
2726 3650 0.318360 CCAGTAACGCGTCACACAGA 60.318 55.000 16.25 0.00 0.00 3.41
2727 3651 1.053048 CAGTAACGCGTCACACAGAG 58.947 55.000 16.25 3.80 0.00 3.35
2728 3652 0.039437 AGTAACGCGTCACACAGAGG 60.039 55.000 16.25 0.00 35.26 3.69
2729 3653 0.318445 GTAACGCGTCACACAGAGGT 60.318 55.000 14.44 0.00 34.65 3.85
2739 3663 2.581354 ACAGAGGTGAGGCGATGC 59.419 61.111 0.00 0.00 0.00 3.91
2740 3664 1.986757 ACAGAGGTGAGGCGATGCT 60.987 57.895 0.00 0.00 0.00 3.79
2741 3665 1.220206 CAGAGGTGAGGCGATGCTT 59.780 57.895 0.00 0.00 0.00 3.91
2742 3666 0.461548 CAGAGGTGAGGCGATGCTTA 59.538 55.000 0.00 0.00 0.00 3.09
2743 3667 0.749649 AGAGGTGAGGCGATGCTTAG 59.250 55.000 0.00 0.00 0.00 2.18
2744 3668 0.747255 GAGGTGAGGCGATGCTTAGA 59.253 55.000 0.00 0.00 0.00 2.10
2745 3669 0.461961 AGGTGAGGCGATGCTTAGAC 59.538 55.000 0.00 0.00 0.00 2.59
2746 3670 0.461961 GGTGAGGCGATGCTTAGACT 59.538 55.000 0.00 0.00 0.00 3.24
2747 3671 1.537135 GGTGAGGCGATGCTTAGACTC 60.537 57.143 8.43 8.43 42.67 3.36
2748 3672 0.382158 TGAGGCGATGCTTAGACTCG 59.618 55.000 10.35 0.57 45.20 4.18
2752 3676 2.211675 CGATGCTTAGACTCGCTGC 58.788 57.895 0.00 0.00 0.00 5.25
2753 3677 1.535636 CGATGCTTAGACTCGCTGCG 61.536 60.000 17.25 17.25 0.00 5.18
2754 3678 0.248661 GATGCTTAGACTCGCTGCGA 60.249 55.000 24.43 24.43 0.00 5.10
2755 3679 0.387202 ATGCTTAGACTCGCTGCGAT 59.613 50.000 26.15 15.29 34.61 4.58
2756 3680 0.526310 TGCTTAGACTCGCTGCGATG 60.526 55.000 26.15 20.23 34.61 3.84
2757 3681 0.248661 GCTTAGACTCGCTGCGATGA 60.249 55.000 26.15 6.82 34.61 2.92
2758 3682 1.752753 CTTAGACTCGCTGCGATGAG 58.247 55.000 26.15 16.31 34.61 2.90
2775 3699 4.657824 GCTATAGGCGCGCCCGAA 62.658 66.667 44.47 30.89 39.21 4.30
2776 3700 2.430921 CTATAGGCGCGCCCGAAG 60.431 66.667 44.47 32.78 39.21 3.79
2792 3716 2.928694 CGAAGGAAAATTGGGTTGTCG 58.071 47.619 0.00 0.00 0.00 4.35
2793 3717 2.672714 GAAGGAAAATTGGGTTGTCGC 58.327 47.619 0.00 0.00 0.00 5.19
2794 3718 1.698506 AGGAAAATTGGGTTGTCGCA 58.301 45.000 0.00 0.00 34.75 5.10
2795 3719 2.247358 AGGAAAATTGGGTTGTCGCAT 58.753 42.857 0.00 0.00 36.44 4.73
2796 3720 2.231235 AGGAAAATTGGGTTGTCGCATC 59.769 45.455 0.00 0.00 36.44 3.91
2797 3721 2.029470 GGAAAATTGGGTTGTCGCATCA 60.029 45.455 0.00 0.00 36.44 3.07
2798 3722 3.553922 GGAAAATTGGGTTGTCGCATCAA 60.554 43.478 0.00 0.00 36.44 2.57
2799 3723 3.959535 AAATTGGGTTGTCGCATCAAT 57.040 38.095 0.00 0.00 36.44 2.57
2800 3724 3.959535 AATTGGGTTGTCGCATCAATT 57.040 38.095 0.00 0.00 36.44 2.32
2801 3725 3.959535 ATTGGGTTGTCGCATCAATTT 57.040 38.095 0.00 0.00 36.44 1.82
2802 3726 3.742433 TTGGGTTGTCGCATCAATTTT 57.258 38.095 0.00 0.00 36.44 1.82
2803 3727 3.296322 TGGGTTGTCGCATCAATTTTC 57.704 42.857 0.00 0.00 0.00 2.29
2804 3728 2.890311 TGGGTTGTCGCATCAATTTTCT 59.110 40.909 0.00 0.00 0.00 2.52
2805 3729 3.320541 TGGGTTGTCGCATCAATTTTCTT 59.679 39.130 0.00 0.00 0.00 2.52
2806 3730 3.920412 GGGTTGTCGCATCAATTTTCTTC 59.080 43.478 0.00 0.00 0.00 2.87
2807 3731 4.321230 GGGTTGTCGCATCAATTTTCTTCT 60.321 41.667 0.00 0.00 0.00 2.85
2808 3732 5.222631 GGTTGTCGCATCAATTTTCTTCTT 58.777 37.500 0.00 0.00 0.00 2.52
2809 3733 6.378582 GGTTGTCGCATCAATTTTCTTCTTA 58.621 36.000 0.00 0.00 0.00 2.10
2810 3734 6.524586 GGTTGTCGCATCAATTTTCTTCTTAG 59.475 38.462 0.00 0.00 0.00 2.18
2811 3735 7.298122 GTTGTCGCATCAATTTTCTTCTTAGA 58.702 34.615 0.00 0.00 0.00 2.10
2812 3736 6.831769 TGTCGCATCAATTTTCTTCTTAGAC 58.168 36.000 0.00 0.00 0.00 2.59
2813 3737 6.650807 TGTCGCATCAATTTTCTTCTTAGACT 59.349 34.615 0.00 0.00 0.00 3.24
2814 3738 7.148573 TGTCGCATCAATTTTCTTCTTAGACTC 60.149 37.037 0.00 0.00 0.00 3.36
2815 3739 6.873605 TCGCATCAATTTTCTTCTTAGACTCA 59.126 34.615 0.00 0.00 0.00 3.41
2816 3740 7.387673 TCGCATCAATTTTCTTCTTAGACTCAA 59.612 33.333 0.00 0.00 0.00 3.02
2817 3741 7.691463 CGCATCAATTTTCTTCTTAGACTCAAG 59.309 37.037 0.00 0.00 0.00 3.02
2818 3742 8.725148 GCATCAATTTTCTTCTTAGACTCAAGA 58.275 33.333 0.00 0.00 32.71 3.02
2867 3791 4.691860 ATATCGCTGCATCTTAAATGGC 57.308 40.909 0.00 0.00 0.00 4.40
2868 3792 1.748950 TCGCTGCATCTTAAATGGCA 58.251 45.000 0.00 0.00 34.66 4.92
2869 3793 2.090760 TCGCTGCATCTTAAATGGCAA 58.909 42.857 0.00 0.00 35.59 4.52
2870 3794 2.097954 TCGCTGCATCTTAAATGGCAAG 59.902 45.455 0.00 0.00 35.59 4.01
2871 3795 2.097954 CGCTGCATCTTAAATGGCAAGA 59.902 45.455 0.00 0.00 35.59 3.02
2872 3796 3.243301 CGCTGCATCTTAAATGGCAAGAT 60.243 43.478 0.00 0.00 42.19 2.40
2873 3797 4.023792 CGCTGCATCTTAAATGGCAAGATA 60.024 41.667 0.00 0.00 40.05 1.98
2874 3798 5.218139 GCTGCATCTTAAATGGCAAGATAC 58.782 41.667 0.00 0.00 40.05 2.24
2875 3799 5.221106 GCTGCATCTTAAATGGCAAGATACA 60.221 40.000 0.00 0.00 40.05 2.29
2876 3800 6.681120 GCTGCATCTTAAATGGCAAGATACAA 60.681 38.462 0.00 0.00 40.05 2.41
2877 3801 7.167924 TGCATCTTAAATGGCAAGATACAAA 57.832 32.000 0.00 0.00 40.05 2.83
2878 3802 7.035004 TGCATCTTAAATGGCAAGATACAAAC 58.965 34.615 0.00 0.00 40.05 2.93
2879 3803 6.476706 GCATCTTAAATGGCAAGATACAAACC 59.523 38.462 0.00 0.00 40.05 3.27
2880 3804 7.546358 CATCTTAAATGGCAAGATACAAACCA 58.454 34.615 0.00 0.00 40.05 3.67
2881 3805 7.531857 TCTTAAATGGCAAGATACAAACCAA 57.468 32.000 0.00 0.00 33.30 3.67
2882 3806 7.375053 TCTTAAATGGCAAGATACAAACCAAC 58.625 34.615 0.00 0.00 33.30 3.77
2883 3807 5.806654 AAATGGCAAGATACAAACCAACT 57.193 34.783 0.00 0.00 33.30 3.16
2884 3808 4.789012 ATGGCAAGATACAAACCAACTG 57.211 40.909 0.00 0.00 33.30 3.16
2885 3809 2.295909 TGGCAAGATACAAACCAACTGC 59.704 45.455 0.00 0.00 0.00 4.40
2886 3810 2.584791 GCAAGATACAAACCAACTGCG 58.415 47.619 0.00 0.00 0.00 5.18
2887 3811 2.225491 GCAAGATACAAACCAACTGCGA 59.775 45.455 0.00 0.00 0.00 5.10
2888 3812 3.304391 GCAAGATACAAACCAACTGCGAA 60.304 43.478 0.00 0.00 0.00 4.70
2889 3813 4.791411 GCAAGATACAAACCAACTGCGAAA 60.791 41.667 0.00 0.00 0.00 3.46
2890 3814 5.277825 CAAGATACAAACCAACTGCGAAAA 58.722 37.500 0.00 0.00 0.00 2.29
2891 3815 5.508200 AGATACAAACCAACTGCGAAAAA 57.492 34.783 0.00 0.00 0.00 1.94
2913 3837 7.875327 AAAATCCATATTTTGCGTACCTAGT 57.125 32.000 0.00 0.00 42.41 2.57
2914 3838 7.875327 AAATCCATATTTTGCGTACCTAGTT 57.125 32.000 0.00 0.00 30.98 2.24
2915 3839 8.967664 AAATCCATATTTTGCGTACCTAGTTA 57.032 30.769 0.00 0.00 30.98 2.24
2916 3840 7.958053 ATCCATATTTTGCGTACCTAGTTAC 57.042 36.000 0.00 0.00 0.00 2.50
2917 3841 6.876155 TCCATATTTTGCGTACCTAGTTACA 58.124 36.000 0.00 0.00 0.00 2.41
2918 3842 7.329499 TCCATATTTTGCGTACCTAGTTACAA 58.671 34.615 0.00 0.00 0.00 2.41
2919 3843 7.823310 TCCATATTTTGCGTACCTAGTTACAAA 59.177 33.333 0.00 0.00 0.00 2.83
2920 3844 7.906527 CCATATTTTGCGTACCTAGTTACAAAC 59.093 37.037 0.00 0.00 0.00 2.93
2921 3845 8.662141 CATATTTTGCGTACCTAGTTACAAACT 58.338 33.333 0.00 0.00 45.40 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.776665 AGCCACATAAGGACATACCCT 58.223 47.619 0.00 0.00 40.05 4.34
67 69 8.034804 AGTGAAGCAAGACTTTTAATTGTTGTT 58.965 29.630 0.00 0.00 39.29 2.83
76 79 7.011109 GTGTCAAGTAGTGAAGCAAGACTTTTA 59.989 37.037 0.00 0.00 39.29 1.52
90 94 2.155732 GTGTGCATCGTGTCAAGTAGTG 59.844 50.000 0.00 0.00 0.00 2.74
149 153 7.676004 TCCTTTGGTTTCTTTCCCAAATAATC 58.324 34.615 4.47 0.00 46.57 1.75
151 155 7.625498 ATCCTTTGGTTTCTTTCCCAAATAA 57.375 32.000 4.47 0.00 46.57 1.40
181 185 2.396590 AGAAACCGTGTCACACTGTT 57.603 45.000 11.63 11.63 41.96 3.16
225 260 2.158827 CGTCATTGGGATCCATGTACCA 60.159 50.000 15.23 0.00 31.53 3.25
272 307 9.862149 ACTTTTCTCCTTTCTATTTTCCTTGTA 57.138 29.630 0.00 0.00 0.00 2.41
293 339 6.613679 TCCCCATCCTTTTCAACTTTACTTTT 59.386 34.615 0.00 0.00 0.00 2.27
351 397 1.686587 TGGACACGAGCACCTATATGG 59.313 52.381 0.00 0.00 42.93 2.74
382 1004 0.768221 TTGTGCACTCCCCTCCTCTT 60.768 55.000 19.41 0.00 0.00 2.85
399 1021 0.455464 TGTCGCGACGTAGACCATTG 60.455 55.000 31.88 0.00 36.61 2.82
402 1024 1.135939 CATGTCGCGACGTAGACCA 59.864 57.895 31.75 14.55 36.61 4.02
551 1179 6.379703 TTGGTACCAAAGAAACCATATGATGG 59.620 38.462 25.19 3.88 42.65 3.51
584 1212 2.621407 CCTCTCCCAAGCCTTTATTGCA 60.621 50.000 0.00 0.00 0.00 4.08
727 1395 1.558167 TAACCCCTTCGGATGCAGCA 61.558 55.000 3.51 0.00 34.64 4.41
880 1564 2.240921 TGGATGGGTATTTGTAGCTGCA 59.759 45.455 0.00 0.00 0.00 4.41
968 1706 3.371917 GGTCAACTGGATGAATGGATGGA 60.372 47.826 0.00 0.00 0.00 3.41
970 1708 2.615447 CGGTCAACTGGATGAATGGATG 59.385 50.000 0.00 0.00 0.00 3.51
971 1709 2.421952 CCGGTCAACTGGATGAATGGAT 60.422 50.000 1.47 0.00 45.36 3.41
972 1710 1.065491 CCGGTCAACTGGATGAATGGA 60.065 52.381 1.47 0.00 45.36 3.41
973 1711 1.065491 TCCGGTCAACTGGATGAATGG 60.065 52.381 6.61 0.00 46.04 3.16
974 1712 2.401583 TCCGGTCAACTGGATGAATG 57.598 50.000 6.61 0.00 46.04 2.67
987 1725 1.817099 CTCCATGCTTGCTCCGGTC 60.817 63.158 0.00 0.00 0.00 4.79
1010 1750 1.963855 CGAACGGTCATTGTGGCCA 60.964 57.895 0.00 0.00 43.88 5.36
1152 1895 1.077787 GACATGGTGGATGGCGGAA 60.078 57.895 0.00 0.00 36.23 4.30
1394 2137 1.856014 GCAATACATTCAAGCGGTCGC 60.856 52.381 7.32 7.32 42.33 5.19
1470 2213 2.681064 AACACCGGTAGCGGGCTA 60.681 61.111 34.40 0.00 0.00 3.93
1624 2369 8.079211 TGCAGGTCTTAGTAGATTCAATTACT 57.921 34.615 0.00 0.00 34.64 2.24
1628 2373 5.762218 GCATGCAGGTCTTAGTAGATTCAAT 59.238 40.000 14.21 0.00 31.86 2.57
1644 2389 1.244816 ATCCGAATCATGCATGCAGG 58.755 50.000 25.78 25.78 0.00 4.85
1664 2419 7.397221 TCAGACATCAATGATACAAAGGTTCT 58.603 34.615 0.00 0.00 0.00 3.01
1668 2427 7.797038 TCATCAGACATCAATGATACAAAGG 57.203 36.000 0.00 0.00 34.42 3.11
1892 2654 2.268076 CGTTGGTTGGCCTGGGAAG 61.268 63.158 3.32 0.00 35.27 3.46
1915 2677 0.400381 TGGATGGATCAGGCTAGGCA 60.400 55.000 19.70 0.00 0.00 4.75
1943 2706 3.247886 CGAGCATTGAGACAAGATGATGG 59.752 47.826 0.00 0.00 0.00 3.51
1978 2746 4.142160 CGTCACAAATCTGGTAGATCTGGA 60.142 45.833 5.18 0.00 32.89 3.86
2066 2838 6.978080 GGACAAACAAACTTATTCTCAAGCAA 59.022 34.615 0.00 0.00 0.00 3.91
2077 2849 5.246429 ACCAAACCAAGGACAAACAAACTTA 59.754 36.000 0.00 0.00 0.00 2.24
2087 2860 7.231115 GGTTTATTTAGTACCAAACCAAGGACA 59.769 37.037 9.58 0.00 45.98 4.02
2088 2861 7.596494 GGTTTATTTAGTACCAAACCAAGGAC 58.404 38.462 9.58 0.65 45.98 3.85
2142 2920 2.713595 TGGGAGAAGGAAGGAAAGGAA 58.286 47.619 0.00 0.00 0.00 3.36
2148 2926 2.108250 CAAGGTTTGGGAGAAGGAAGGA 59.892 50.000 0.00 0.00 0.00 3.36
2167 3045 1.203523 ACCAAGAACTTTTGCACGCAA 59.796 42.857 0.00 0.00 0.00 4.85
2172 3051 6.707440 TGATCTAAACCAAGAACTTTTGCA 57.293 33.333 0.00 0.00 0.00 4.08
2182 3061 4.578105 GGCAGAAGGATGATCTAAACCAAG 59.422 45.833 0.00 0.00 0.00 3.61
2209 3088 2.016165 GAAGTTTTGCGCGCCAAGG 61.016 57.895 30.77 0.00 34.34 3.61
2224 3103 9.654417 CACAATTTTAAAATCAAAGCCAAGAAG 57.346 29.630 13.68 0.00 0.00 2.85
2251 3130 3.245754 CGCCTTTTGTTGTGTCTAACGTA 59.754 43.478 0.00 0.00 33.28 3.57
2262 3186 0.936600 CTTTTGGGCGCCTTTTGTTG 59.063 50.000 28.56 7.19 0.00 3.33
2272 3196 1.885887 TCCATCAAGAACTTTTGGGCG 59.114 47.619 11.10 0.00 0.00 6.13
2273 3197 2.893489 AGTCCATCAAGAACTTTTGGGC 59.107 45.455 8.81 8.81 31.50 5.36
2274 3198 5.535753 AAAGTCCATCAAGAACTTTTGGG 57.464 39.130 11.10 2.70 39.54 4.12
2282 3206 4.709397 ACCACAACAAAAGTCCATCAAGAA 59.291 37.500 0.00 0.00 0.00 2.52
2284 3208 4.654091 ACCACAACAAAAGTCCATCAAG 57.346 40.909 0.00 0.00 0.00 3.02
2287 3211 5.519927 CAGAAAACCACAACAAAAGTCCATC 59.480 40.000 0.00 0.00 0.00 3.51
2288 3212 5.046663 ACAGAAAACCACAACAAAAGTCCAT 60.047 36.000 0.00 0.00 0.00 3.41
2289 3213 4.282195 ACAGAAAACCACAACAAAAGTCCA 59.718 37.500 0.00 0.00 0.00 4.02
2290 3214 4.816392 ACAGAAAACCACAACAAAAGTCC 58.184 39.130 0.00 0.00 0.00 3.85
2291 3215 6.779115 AAACAGAAAACCACAACAAAAGTC 57.221 33.333 0.00 0.00 0.00 3.01
2292 3216 6.989759 AGAAAACAGAAAACCACAACAAAAGT 59.010 30.769 0.00 0.00 0.00 2.66
2293 3217 7.170658 TCAGAAAACAGAAAACCACAACAAAAG 59.829 33.333 0.00 0.00 0.00 2.27
2294 3218 6.986817 TCAGAAAACAGAAAACCACAACAAAA 59.013 30.769 0.00 0.00 0.00 2.44
2295 3219 6.516718 TCAGAAAACAGAAAACCACAACAAA 58.483 32.000 0.00 0.00 0.00 2.83
2296 3220 6.090483 TCAGAAAACAGAAAACCACAACAA 57.910 33.333 0.00 0.00 0.00 2.83
2297 3221 5.242838 ACTCAGAAAACAGAAAACCACAACA 59.757 36.000 0.00 0.00 0.00 3.33
2298 3222 5.709966 ACTCAGAAAACAGAAAACCACAAC 58.290 37.500 0.00 0.00 0.00 3.32
2299 3223 5.710099 AGACTCAGAAAACAGAAAACCACAA 59.290 36.000 0.00 0.00 0.00 3.33
2300 3224 5.253330 AGACTCAGAAAACAGAAAACCACA 58.747 37.500 0.00 0.00 0.00 4.17
2301 3225 5.586643 AGAGACTCAGAAAACAGAAAACCAC 59.413 40.000 5.02 0.00 0.00 4.16
2302 3226 5.745227 AGAGACTCAGAAAACAGAAAACCA 58.255 37.500 5.02 0.00 0.00 3.67
2303 3227 6.685527 AAGAGACTCAGAAAACAGAAAACC 57.314 37.500 5.02 0.00 0.00 3.27
2304 3228 9.491934 GTTAAAGAGACTCAGAAAACAGAAAAC 57.508 33.333 5.02 0.00 0.00 2.43
2305 3229 9.449719 AGTTAAAGAGACTCAGAAAACAGAAAA 57.550 29.630 5.02 0.00 0.00 2.29
2306 3230 9.449719 AAGTTAAAGAGACTCAGAAAACAGAAA 57.550 29.630 5.02 0.00 0.00 2.52
2307 3231 9.449719 AAAGTTAAAGAGACTCAGAAAACAGAA 57.550 29.630 5.02 0.00 0.00 3.02
2308 3232 9.449719 AAAAGTTAAAGAGACTCAGAAAACAGA 57.550 29.630 5.02 0.00 0.00 3.41
2342 3266 9.686683 TGGAAAATAAAACAATGGGAAAAAGAA 57.313 25.926 0.00 0.00 0.00 2.52
2343 3267 9.859152 ATGGAAAATAAAACAATGGGAAAAAGA 57.141 25.926 0.00 0.00 0.00 2.52
2345 3269 9.072375 GGATGGAAAATAAAACAATGGGAAAAA 57.928 29.630 0.00 0.00 0.00 1.94
2346 3270 7.389053 CGGATGGAAAATAAAACAATGGGAAAA 59.611 33.333 0.00 0.00 0.00 2.29
2347 3271 6.876257 CGGATGGAAAATAAAACAATGGGAAA 59.124 34.615 0.00 0.00 0.00 3.13
2348 3272 6.014156 ACGGATGGAAAATAAAACAATGGGAA 60.014 34.615 0.00 0.00 0.00 3.97
2349 3273 5.482175 ACGGATGGAAAATAAAACAATGGGA 59.518 36.000 0.00 0.00 0.00 4.37
2350 3274 5.729510 ACGGATGGAAAATAAAACAATGGG 58.270 37.500 0.00 0.00 0.00 4.00
2351 3275 7.665561 AAACGGATGGAAAATAAAACAATGG 57.334 32.000 0.00 0.00 0.00 3.16
2354 3278 9.819267 ACTAAAAACGGATGGAAAATAAAACAA 57.181 25.926 0.00 0.00 0.00 2.83
2355 3279 9.819267 AACTAAAAACGGATGGAAAATAAAACA 57.181 25.926 0.00 0.00 0.00 2.83
2387 3311 9.729281 AGAAAACCGGTAAAGAAACATAGAATA 57.271 29.630 8.00 0.00 0.00 1.75
2388 3312 8.631480 AGAAAACCGGTAAAGAAACATAGAAT 57.369 30.769 8.00 0.00 0.00 2.40
2389 3313 8.454570 AAGAAAACCGGTAAAGAAACATAGAA 57.545 30.769 8.00 0.00 0.00 2.10
2390 3314 7.716123 TGAAGAAAACCGGTAAAGAAACATAGA 59.284 33.333 8.00 0.00 0.00 1.98
2391 3315 7.867752 TGAAGAAAACCGGTAAAGAAACATAG 58.132 34.615 8.00 0.00 0.00 2.23
2392 3316 7.499895 ACTGAAGAAAACCGGTAAAGAAACATA 59.500 33.333 8.00 0.00 0.00 2.29
2393 3317 6.320418 ACTGAAGAAAACCGGTAAAGAAACAT 59.680 34.615 8.00 0.00 0.00 2.71
2394 3318 5.648960 ACTGAAGAAAACCGGTAAAGAAACA 59.351 36.000 8.00 2.73 0.00 2.83
2395 3319 6.127810 ACTGAAGAAAACCGGTAAAGAAAC 57.872 37.500 8.00 0.00 0.00 2.78
2396 3320 6.762702 AACTGAAGAAAACCGGTAAAGAAA 57.237 33.333 8.00 0.00 0.00 2.52
2397 3321 6.762702 AAACTGAAGAAAACCGGTAAAGAA 57.237 33.333 8.00 0.00 0.00 2.52
2398 3322 6.762702 AAAACTGAAGAAAACCGGTAAAGA 57.237 33.333 8.00 0.00 0.00 2.52
2399 3323 6.630045 CGTAAAACTGAAGAAAACCGGTAAAG 59.370 38.462 8.00 0.32 0.00 1.85
2400 3324 6.458070 CCGTAAAACTGAAGAAAACCGGTAAA 60.458 38.462 8.00 0.00 0.00 2.01
2401 3325 5.007528 CCGTAAAACTGAAGAAAACCGGTAA 59.992 40.000 8.00 0.00 0.00 2.85
2402 3326 4.511082 CCGTAAAACTGAAGAAAACCGGTA 59.489 41.667 8.00 0.00 0.00 4.02
2403 3327 3.313249 CCGTAAAACTGAAGAAAACCGGT 59.687 43.478 0.00 0.00 0.00 5.28
2404 3328 3.313249 ACCGTAAAACTGAAGAAAACCGG 59.687 43.478 0.00 0.00 37.73 5.28
2405 3329 4.541085 ACCGTAAAACTGAAGAAAACCG 57.459 40.909 0.00 0.00 0.00 4.44
2406 3330 5.005012 GCAAACCGTAAAACTGAAGAAAACC 59.995 40.000 0.00 0.00 0.00 3.27
2407 3331 5.005012 GGCAAACCGTAAAACTGAAGAAAAC 59.995 40.000 0.00 0.00 0.00 2.43
2408 3332 5.103687 GGCAAACCGTAAAACTGAAGAAAA 58.896 37.500 0.00 0.00 0.00 2.29
2409 3333 4.158025 TGGCAAACCGTAAAACTGAAGAAA 59.842 37.500 0.00 0.00 39.70 2.52
2410 3334 3.695060 TGGCAAACCGTAAAACTGAAGAA 59.305 39.130 0.00 0.00 39.70 2.52
2411 3335 3.280295 TGGCAAACCGTAAAACTGAAGA 58.720 40.909 0.00 0.00 39.70 2.87
2412 3336 3.701532 TGGCAAACCGTAAAACTGAAG 57.298 42.857 0.00 0.00 39.70 3.02
2413 3337 4.657436 AATGGCAAACCGTAAAACTGAA 57.343 36.364 0.00 0.00 39.70 3.02
2414 3338 4.657436 AAATGGCAAACCGTAAAACTGA 57.343 36.364 0.00 0.00 39.70 3.41
2415 3339 5.726729 AAAAATGGCAAACCGTAAAACTG 57.273 34.783 0.00 0.00 39.70 3.16
2501 3425 8.074370 CGCATTTCATAGAATCTTCATGACATT 58.926 33.333 0.00 0.00 30.28 2.71
2502 3426 7.228108 ACGCATTTCATAGAATCTTCATGACAT 59.772 33.333 0.00 0.00 30.28 3.06
2503 3427 6.539826 ACGCATTTCATAGAATCTTCATGACA 59.460 34.615 0.00 0.00 30.28 3.58
2504 3428 6.849811 CACGCATTTCATAGAATCTTCATGAC 59.150 38.462 0.00 0.00 30.28 3.06
2505 3429 6.762661 TCACGCATTTCATAGAATCTTCATGA 59.237 34.615 0.00 0.00 0.00 3.07
2506 3430 6.951643 TCACGCATTTCATAGAATCTTCATG 58.048 36.000 0.00 0.00 0.00 3.07
2507 3431 7.066163 TGTTCACGCATTTCATAGAATCTTCAT 59.934 33.333 0.00 0.00 0.00 2.57
2508 3432 6.371271 TGTTCACGCATTTCATAGAATCTTCA 59.629 34.615 0.00 0.00 0.00 3.02
2509 3433 6.775088 TGTTCACGCATTTCATAGAATCTTC 58.225 36.000 0.00 0.00 0.00 2.87
2510 3434 6.741992 TGTTCACGCATTTCATAGAATCTT 57.258 33.333 0.00 0.00 0.00 2.40
2511 3435 6.741992 TTGTTCACGCATTTCATAGAATCT 57.258 33.333 0.00 0.00 0.00 2.40
2512 3436 7.975866 AATTGTTCACGCATTTCATAGAATC 57.024 32.000 0.00 0.00 0.00 2.52
2513 3437 8.761575 AAAATTGTTCACGCATTTCATAGAAT 57.238 26.923 0.00 0.00 0.00 2.40
2514 3438 8.486383 CAAAAATTGTTCACGCATTTCATAGAA 58.514 29.630 0.00 0.00 0.00 2.10
2515 3439 7.359097 GCAAAAATTGTTCACGCATTTCATAGA 60.359 33.333 0.00 0.00 0.00 1.98
2516 3440 6.733280 GCAAAAATTGTTCACGCATTTCATAG 59.267 34.615 0.00 0.00 0.00 2.23
2517 3441 6.201615 TGCAAAAATTGTTCACGCATTTCATA 59.798 30.769 0.00 0.00 0.00 2.15
2518 3442 5.007430 TGCAAAAATTGTTCACGCATTTCAT 59.993 32.000 0.00 0.00 0.00 2.57
2519 3443 4.330894 TGCAAAAATTGTTCACGCATTTCA 59.669 33.333 0.00 0.00 0.00 2.69
2520 3444 4.830912 TGCAAAAATTGTTCACGCATTTC 58.169 34.783 0.00 0.00 0.00 2.17
2521 3445 4.871993 TGCAAAAATTGTTCACGCATTT 57.128 31.818 0.00 0.00 0.00 2.32
2522 3446 4.319622 CCATGCAAAAATTGTTCACGCATT 60.320 37.500 2.66 0.00 36.53 3.56
2523 3447 3.186817 CCATGCAAAAATTGTTCACGCAT 59.813 39.130 0.00 0.01 39.07 4.73
2524 3448 2.543012 CCATGCAAAAATTGTTCACGCA 59.457 40.909 0.00 0.00 0.00 5.24
2525 3449 2.662520 GCCATGCAAAAATTGTTCACGC 60.663 45.455 0.00 0.00 0.00 5.34
2526 3450 2.410006 CGCCATGCAAAAATTGTTCACG 60.410 45.455 0.00 0.00 0.00 4.35
2527 3451 2.799412 TCGCCATGCAAAAATTGTTCAC 59.201 40.909 0.00 0.00 0.00 3.18
2528 3452 3.058450 CTCGCCATGCAAAAATTGTTCA 58.942 40.909 0.00 0.00 0.00 3.18
2529 3453 3.316283 TCTCGCCATGCAAAAATTGTTC 58.684 40.909 0.00 0.00 0.00 3.18
2530 3454 3.383620 TCTCGCCATGCAAAAATTGTT 57.616 38.095 0.00 0.00 0.00 2.83
2531 3455 3.383620 TTCTCGCCATGCAAAAATTGT 57.616 38.095 0.00 0.00 0.00 2.71
2532 3456 3.120580 GGTTTCTCGCCATGCAAAAATTG 60.121 43.478 0.00 0.00 0.00 2.32
2533 3457 3.066380 GGTTTCTCGCCATGCAAAAATT 58.934 40.909 0.00 0.00 0.00 1.82
2534 3458 2.299867 AGGTTTCTCGCCATGCAAAAAT 59.700 40.909 0.00 0.00 0.00 1.82
2535 3459 1.686052 AGGTTTCTCGCCATGCAAAAA 59.314 42.857 0.00 0.00 0.00 1.94
2536 3460 1.327303 AGGTTTCTCGCCATGCAAAA 58.673 45.000 0.00 0.00 0.00 2.44
2537 3461 1.327303 AAGGTTTCTCGCCATGCAAA 58.673 45.000 0.00 0.00 0.00 3.68
2538 3462 1.327303 AAAGGTTTCTCGCCATGCAA 58.673 45.000 0.00 0.00 0.00 4.08
2539 3463 1.327303 AAAAGGTTTCTCGCCATGCA 58.673 45.000 0.00 0.00 0.00 3.96
2540 3464 2.438868 AAAAAGGTTTCTCGCCATGC 57.561 45.000 0.00 0.00 0.00 4.06
2665 3589 9.513554 GCTAAGAATATTAGTTAATTCGTTCGC 57.486 33.333 0.00 0.00 37.22 4.70
2677 3601 9.057089 GGCACATTAGTTGCTAAGAATATTAGT 57.943 33.333 0.00 0.00 29.02 2.24
2678 3602 8.223769 CGGCACATTAGTTGCTAAGAATATTAG 58.776 37.037 0.00 0.00 29.02 1.73
2679 3603 7.172532 CCGGCACATTAGTTGCTAAGAATATTA 59.827 37.037 0.00 0.00 29.02 0.98
2680 3604 6.017109 CCGGCACATTAGTTGCTAAGAATATT 60.017 38.462 0.00 0.00 29.02 1.28
2681 3605 5.470098 CCGGCACATTAGTTGCTAAGAATAT 59.530 40.000 0.00 0.00 29.02 1.28
2682 3606 4.814234 CCGGCACATTAGTTGCTAAGAATA 59.186 41.667 0.00 0.00 29.02 1.75
2683 3607 3.627577 CCGGCACATTAGTTGCTAAGAAT 59.372 43.478 0.00 0.00 29.02 2.40
2684 3608 3.006940 CCGGCACATTAGTTGCTAAGAA 58.993 45.455 0.00 0.00 29.02 2.52
2685 3609 2.627945 CCGGCACATTAGTTGCTAAGA 58.372 47.619 0.00 0.00 29.02 2.10
2686 3610 1.064060 GCCGGCACATTAGTTGCTAAG 59.936 52.381 24.80 0.00 29.02 2.18
2687 3611 1.091537 GCCGGCACATTAGTTGCTAA 58.908 50.000 24.80 0.00 0.00 3.09
2688 3612 0.746563 GGCCGGCACATTAGTTGCTA 60.747 55.000 30.85 0.00 0.00 3.49
2689 3613 2.046285 GGCCGGCACATTAGTTGCT 61.046 57.895 30.85 0.00 0.00 3.91
2690 3614 2.489751 GGCCGGCACATTAGTTGC 59.510 61.111 30.85 1.84 0.00 4.17
2691 3615 1.656818 CTGGGCCGGCACATTAGTTG 61.657 60.000 35.51 16.41 0.00 3.16
2692 3616 1.378514 CTGGGCCGGCACATTAGTT 60.379 57.895 35.51 0.00 0.00 2.24
2693 3617 1.268992 TACTGGGCCGGCACATTAGT 61.269 55.000 35.51 28.58 0.00 2.24
2694 3618 0.107410 TTACTGGGCCGGCACATTAG 60.107 55.000 35.51 23.98 0.00 1.73
2695 3619 0.393267 GTTACTGGGCCGGCACATTA 60.393 55.000 35.51 28.97 0.00 1.90
2696 3620 1.677633 GTTACTGGGCCGGCACATT 60.678 57.895 35.51 30.27 0.00 2.71
2697 3621 2.045340 GTTACTGGGCCGGCACAT 60.045 61.111 35.51 24.04 0.00 3.21
2698 3622 4.690719 CGTTACTGGGCCGGCACA 62.691 66.667 33.07 33.07 0.00 4.57
2703 3627 4.728102 TGACGCGTTACTGGGCCG 62.728 66.667 15.53 0.00 0.00 6.13
2704 3628 3.116531 GTGACGCGTTACTGGGCC 61.117 66.667 25.02 5.13 0.00 5.80
2705 3629 2.356553 TGTGACGCGTTACTGGGC 60.357 61.111 30.48 10.13 0.00 5.36
2706 3630 1.282248 CTGTGTGACGCGTTACTGGG 61.282 60.000 30.48 17.64 0.00 4.45
2707 3631 0.318360 TCTGTGTGACGCGTTACTGG 60.318 55.000 30.48 20.53 0.00 4.00
2708 3632 1.053048 CTCTGTGTGACGCGTTACTG 58.947 55.000 30.48 22.85 0.00 2.74
2709 3633 0.039437 CCTCTGTGTGACGCGTTACT 60.039 55.000 30.48 0.34 0.00 2.24
2710 3634 0.318445 ACCTCTGTGTGACGCGTTAC 60.318 55.000 25.47 25.47 0.00 2.50
2711 3635 0.318360 CACCTCTGTGTGACGCGTTA 60.318 55.000 15.53 6.34 38.55 3.18
2712 3636 1.591594 CACCTCTGTGTGACGCGTT 60.592 57.895 15.53 0.00 38.55 4.84
2713 3637 2.027605 CACCTCTGTGTGACGCGT 59.972 61.111 13.85 13.85 38.55 6.01
2714 3638 1.730902 CTCACCTCTGTGTGACGCG 60.731 63.158 3.53 3.53 43.26 6.01
2715 3639 1.373497 CCTCACCTCTGTGTGACGC 60.373 63.158 0.00 0.00 43.26 5.19
2716 3640 1.373497 GCCTCACCTCTGTGTGACG 60.373 63.158 0.00 0.00 43.26 4.35
2717 3641 1.373497 CGCCTCACCTCTGTGTGAC 60.373 63.158 0.00 0.00 43.26 3.67
2718 3642 0.900182 ATCGCCTCACCTCTGTGTGA 60.900 55.000 0.00 0.00 43.26 3.58
2719 3643 0.738762 CATCGCCTCACCTCTGTGTG 60.739 60.000 0.00 0.00 43.26 3.82
2720 3644 1.593787 CATCGCCTCACCTCTGTGT 59.406 57.895 0.00 0.00 43.26 3.72
2721 3645 1.812922 GCATCGCCTCACCTCTGTG 60.813 63.158 0.00 0.00 44.18 3.66
2722 3646 1.548357 AAGCATCGCCTCACCTCTGT 61.548 55.000 0.00 0.00 0.00 3.41
2723 3647 0.461548 TAAGCATCGCCTCACCTCTG 59.538 55.000 0.00 0.00 0.00 3.35
2724 3648 0.749649 CTAAGCATCGCCTCACCTCT 59.250 55.000 0.00 0.00 0.00 3.69
2725 3649 0.747255 TCTAAGCATCGCCTCACCTC 59.253 55.000 0.00 0.00 0.00 3.85
2726 3650 0.461961 GTCTAAGCATCGCCTCACCT 59.538 55.000 0.00 0.00 0.00 4.00
2727 3651 0.461961 AGTCTAAGCATCGCCTCACC 59.538 55.000 0.00 0.00 0.00 4.02
2728 3652 1.846541 GAGTCTAAGCATCGCCTCAC 58.153 55.000 0.00 0.00 0.00 3.51
2729 3653 0.382158 CGAGTCTAAGCATCGCCTCA 59.618 55.000 0.00 0.00 0.00 3.86
2730 3654 3.171705 CGAGTCTAAGCATCGCCTC 57.828 57.895 0.00 0.00 0.00 4.70
2734 3658 1.535636 CGCAGCGAGTCTAAGCATCG 61.536 60.000 9.98 0.00 39.40 3.84
2735 3659 0.248661 TCGCAGCGAGTCTAAGCATC 60.249 55.000 15.11 0.00 35.48 3.91
2736 3660 0.387202 ATCGCAGCGAGTCTAAGCAT 59.613 50.000 24.08 0.00 39.91 3.79
2737 3661 0.526310 CATCGCAGCGAGTCTAAGCA 60.526 55.000 24.08 0.00 39.91 3.91
2738 3662 0.248661 TCATCGCAGCGAGTCTAAGC 60.249 55.000 24.08 0.00 39.91 3.09
2739 3663 1.752753 CTCATCGCAGCGAGTCTAAG 58.247 55.000 24.08 11.31 39.91 2.18
2740 3664 0.248661 GCTCATCGCAGCGAGTCTAA 60.249 55.000 24.08 5.50 39.91 2.10
2741 3665 1.098129 AGCTCATCGCAGCGAGTCTA 61.098 55.000 24.08 7.28 44.82 2.59
2742 3666 1.098129 TAGCTCATCGCAGCGAGTCT 61.098 55.000 24.08 17.52 44.82 3.24
2743 3667 0.039617 ATAGCTCATCGCAGCGAGTC 60.040 55.000 24.08 11.42 44.82 3.36
2744 3668 1.198867 CTATAGCTCATCGCAGCGAGT 59.801 52.381 24.08 8.72 44.82 4.18
2745 3669 1.467204 CCTATAGCTCATCGCAGCGAG 60.467 57.143 24.08 14.88 44.82 5.03
2746 3670 0.523519 CCTATAGCTCATCGCAGCGA 59.476 55.000 22.06 22.06 44.82 4.93
2747 3671 1.075425 GCCTATAGCTCATCGCAGCG 61.075 60.000 9.06 9.06 44.82 5.18
2748 3672 1.075425 CGCCTATAGCTCATCGCAGC 61.075 60.000 0.00 0.00 42.61 5.25
2749 3673 1.075425 GCGCCTATAGCTCATCGCAG 61.075 60.000 0.00 0.77 42.61 5.18
2750 3674 1.080501 GCGCCTATAGCTCATCGCA 60.081 57.895 0.00 0.00 42.61 5.10
2751 3675 2.155194 CGCGCCTATAGCTCATCGC 61.155 63.158 0.00 0.00 40.39 4.58
2752 3676 2.155194 GCGCGCCTATAGCTCATCG 61.155 63.158 23.24 0.00 40.39 3.84
2753 3677 1.807573 GGCGCGCCTATAGCTCATC 60.808 63.158 41.71 11.62 40.39 2.92
2754 3678 2.262915 GGCGCGCCTATAGCTCAT 59.737 61.111 41.71 0.00 40.39 2.90
2755 3679 3.991051 GGGCGCGCCTATAGCTCA 61.991 66.667 45.23 0.00 40.39 4.26
2758 3682 4.657824 TTCGGGCGCGCCTATAGC 62.658 66.667 45.23 29.10 36.10 2.97
2759 3683 2.430921 CTTCGGGCGCGCCTATAG 60.431 66.667 45.23 33.17 36.10 1.31
2760 3684 3.986006 CCTTCGGGCGCGCCTATA 61.986 66.667 45.23 29.30 36.10 1.31
2765 3689 3.336715 AATTTTCCTTCGGGCGCGC 62.337 57.895 25.94 25.94 34.44 6.86
2766 3690 1.514014 CAATTTTCCTTCGGGCGCG 60.514 57.895 18.21 18.21 34.44 6.86
2767 3691 1.153842 CCAATTTTCCTTCGGGCGC 60.154 57.895 0.00 0.00 34.44 6.53
2768 3692 1.248101 ACCCAATTTTCCTTCGGGCG 61.248 55.000 0.00 0.00 40.87 6.13
2769 3693 0.973632 AACCCAATTTTCCTTCGGGC 59.026 50.000 0.00 0.00 40.87 6.13
2770 3694 1.967779 ACAACCCAATTTTCCTTCGGG 59.032 47.619 0.00 0.00 43.02 5.14
2771 3695 2.351350 CGACAACCCAATTTTCCTTCGG 60.351 50.000 0.00 0.00 0.00 4.30
2772 3696 2.920647 GCGACAACCCAATTTTCCTTCG 60.921 50.000 0.00 0.00 0.00 3.79
2773 3697 2.035321 TGCGACAACCCAATTTTCCTTC 59.965 45.455 0.00 0.00 0.00 3.46
2774 3698 2.035632 TGCGACAACCCAATTTTCCTT 58.964 42.857 0.00 0.00 0.00 3.36
2775 3699 1.698506 TGCGACAACCCAATTTTCCT 58.301 45.000 0.00 0.00 0.00 3.36
2776 3700 2.029470 TGATGCGACAACCCAATTTTCC 60.029 45.455 0.00 0.00 0.00 3.13
2777 3701 3.296322 TGATGCGACAACCCAATTTTC 57.704 42.857 0.00 0.00 0.00 2.29
2778 3702 3.742433 TTGATGCGACAACCCAATTTT 57.258 38.095 0.00 0.00 0.00 1.82
2779 3703 3.959535 ATTGATGCGACAACCCAATTT 57.040 38.095 0.00 0.00 32.50 1.82
2780 3704 3.959535 AATTGATGCGACAACCCAATT 57.040 38.095 0.00 0.00 33.96 2.32
2781 3705 3.959535 AAATTGATGCGACAACCCAAT 57.040 38.095 0.00 0.00 32.50 3.16
2782 3706 3.320541 AGAAAATTGATGCGACAACCCAA 59.679 39.130 0.00 0.00 32.50 4.12
2783 3707 2.890311 AGAAAATTGATGCGACAACCCA 59.110 40.909 0.00 0.00 32.50 4.51
2784 3708 3.575965 AGAAAATTGATGCGACAACCC 57.424 42.857 0.00 0.00 32.50 4.11
2785 3709 4.798574 AGAAGAAAATTGATGCGACAACC 58.201 39.130 0.00 0.00 32.50 3.77
2786 3710 7.269297 GTCTAAGAAGAAAATTGATGCGACAAC 59.731 37.037 0.00 0.00 32.16 3.32
2787 3711 7.173218 AGTCTAAGAAGAAAATTGATGCGACAA 59.827 33.333 0.00 0.00 32.16 3.18
2788 3712 6.650807 AGTCTAAGAAGAAAATTGATGCGACA 59.349 34.615 0.00 0.00 32.16 4.35
2789 3713 7.066374 AGTCTAAGAAGAAAATTGATGCGAC 57.934 36.000 0.00 0.00 32.16 5.19
2790 3714 6.873605 TGAGTCTAAGAAGAAAATTGATGCGA 59.126 34.615 0.00 0.00 32.16 5.10
2791 3715 7.065216 TGAGTCTAAGAAGAAAATTGATGCG 57.935 36.000 0.00 0.00 32.16 4.73
2792 3716 8.725148 TCTTGAGTCTAAGAAGAAAATTGATGC 58.275 33.333 3.45 0.00 33.96 3.91
2841 3765 8.397906 GCCATTTAAGATGCAGCGATATATAAA 58.602 33.333 0.00 0.00 0.00 1.40
2842 3766 7.552330 TGCCATTTAAGATGCAGCGATATATAA 59.448 33.333 0.00 0.00 0.00 0.98
2843 3767 7.047271 TGCCATTTAAGATGCAGCGATATATA 58.953 34.615 0.00 0.00 0.00 0.86
2844 3768 5.882000 TGCCATTTAAGATGCAGCGATATAT 59.118 36.000 0.00 0.00 0.00 0.86
2845 3769 5.244755 TGCCATTTAAGATGCAGCGATATA 58.755 37.500 0.00 0.00 0.00 0.86
2846 3770 4.074259 TGCCATTTAAGATGCAGCGATAT 58.926 39.130 0.00 0.00 0.00 1.63
2847 3771 3.475575 TGCCATTTAAGATGCAGCGATA 58.524 40.909 0.00 0.00 0.00 2.92
2848 3772 2.300433 TGCCATTTAAGATGCAGCGAT 58.700 42.857 0.00 0.00 0.00 4.58
2849 3773 1.748950 TGCCATTTAAGATGCAGCGA 58.251 45.000 0.00 0.00 0.00 4.93
2850 3774 2.097954 TCTTGCCATTTAAGATGCAGCG 59.902 45.455 0.00 0.00 34.81 5.18
2851 3775 3.788333 TCTTGCCATTTAAGATGCAGC 57.212 42.857 0.00 0.00 34.81 5.25
2852 3776 6.381481 TGTATCTTGCCATTTAAGATGCAG 57.619 37.500 12.36 0.00 45.72 4.41
2854 3778 6.476706 GGTTTGTATCTTGCCATTTAAGATGC 59.523 38.462 9.76 9.00 42.95 3.91
2855 3779 7.546358 TGGTTTGTATCTTGCCATTTAAGATG 58.454 34.615 9.76 0.00 42.95 2.90
2856 3780 7.716799 TGGTTTGTATCTTGCCATTTAAGAT 57.283 32.000 0.00 0.00 44.61 2.40
2857 3781 7.232534 AGTTGGTTTGTATCTTGCCATTTAAGA 59.767 33.333 0.00 0.00 38.42 2.10
2858 3782 7.329226 CAGTTGGTTTGTATCTTGCCATTTAAG 59.671 37.037 0.00 0.00 0.00 1.85
2859 3783 7.151308 CAGTTGGTTTGTATCTTGCCATTTAA 58.849 34.615 0.00 0.00 0.00 1.52
2860 3784 6.686630 CAGTTGGTTTGTATCTTGCCATTTA 58.313 36.000 0.00 0.00 0.00 1.40
2861 3785 5.540911 CAGTTGGTTTGTATCTTGCCATTT 58.459 37.500 0.00 0.00 0.00 2.32
2862 3786 4.561326 GCAGTTGGTTTGTATCTTGCCATT 60.561 41.667 0.00 0.00 0.00 3.16
2863 3787 3.056607 GCAGTTGGTTTGTATCTTGCCAT 60.057 43.478 0.00 0.00 0.00 4.40
2864 3788 2.295909 GCAGTTGGTTTGTATCTTGCCA 59.704 45.455 0.00 0.00 0.00 4.92
2865 3789 2.668279 CGCAGTTGGTTTGTATCTTGCC 60.668 50.000 0.00 0.00 0.00 4.52
2866 3790 2.225491 TCGCAGTTGGTTTGTATCTTGC 59.775 45.455 0.00 0.00 0.00 4.01
2867 3791 4.481930 TTCGCAGTTGGTTTGTATCTTG 57.518 40.909 0.00 0.00 0.00 3.02
2868 3792 5.508200 TTTTCGCAGTTGGTTTGTATCTT 57.492 34.783 0.00 0.00 0.00 2.40
2869 3793 5.508200 TTTTTCGCAGTTGGTTTGTATCT 57.492 34.783 0.00 0.00 0.00 1.98
2888 3812 8.288689 ACTAGGTACGCAAAATATGGATTTTT 57.711 30.769 0.00 0.00 41.53 1.94
2889 3813 7.875327 ACTAGGTACGCAAAATATGGATTTT 57.125 32.000 0.00 0.00 44.44 1.82
2890 3814 7.875327 AACTAGGTACGCAAAATATGGATTT 57.125 32.000 0.00 0.00 36.82 2.17
2891 3815 7.988599 TGTAACTAGGTACGCAAAATATGGATT 59.011 33.333 13.20 0.00 0.00 3.01
2892 3816 7.502696 TGTAACTAGGTACGCAAAATATGGAT 58.497 34.615 13.20 0.00 0.00 3.41
2893 3817 6.876155 TGTAACTAGGTACGCAAAATATGGA 58.124 36.000 13.20 0.00 0.00 3.41
2894 3818 7.542534 TTGTAACTAGGTACGCAAAATATGG 57.457 36.000 13.20 0.00 0.00 2.74
2895 3819 8.662141 AGTTTGTAACTAGGTACGCAAAATATG 58.338 33.333 13.20 0.00 40.69 1.78
2896 3820 8.782339 AGTTTGTAACTAGGTACGCAAAATAT 57.218 30.769 13.20 0.25 40.69 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.