Multiple sequence alignment - TraesCS6B01G006200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G006200 chr6B 100.000 3323 0 0 1 3323 4450589 4453911 0.000000e+00 6137.0
1 TraesCS6B01G006200 chr6B 92.301 1143 69 8 994 2136 4459542 4458419 0.000000e+00 1605.0
2 TraesCS6B01G006200 chr6B 86.621 583 56 11 1893 2472 4422211 4421648 2.810000e-175 625.0
3 TraesCS6B01G006200 chr6B 89.446 379 30 5 1528 1900 4449855 4449481 1.400000e-128 470.0
4 TraesCS6B01G006200 chr6B 100.000 29 0 0 857 885 4459714 4459686 2.000000e-03 54.7
5 TraesCS6B01G006200 chr6D 89.526 1814 117 29 679 2472 2108544 2106784 0.000000e+00 2230.0
6 TraesCS6B01G006200 chr6D 91.892 111 9 0 2462 2572 25441444 25441554 4.440000e-34 156.0
7 TraesCS6B01G006200 chr6D 95.833 48 1 1 2472 2519 2294799 2294845 3.550000e-10 76.8
8 TraesCS6B01G006200 chr6A 90.227 1719 112 26 770 2472 786570 788248 0.000000e+00 2193.0
9 TraesCS6B01G006200 chr6A 88.821 1476 115 26 701 2136 22070529 22071994 0.000000e+00 1766.0
10 TraesCS6B01G006200 chr6A 84.524 84 5 7 2475 2555 12887606 12887684 3.550000e-10 76.8
11 TraesCS6B01G006200 chr2B 84.418 1091 152 13 1001 2088 792389026 792390101 0.000000e+00 1057.0
12 TraesCS6B01G006200 chr2B 83.547 547 59 18 355 887 773385806 773386335 1.790000e-132 483.0
13 TraesCS6B01G006200 chr2B 86.096 187 19 6 943 1124 773386464 773386648 9.410000e-46 195.0
14 TraesCS6B01G006200 chr2D 84.597 844 106 15 2498 3323 574925416 574926253 0.000000e+00 817.0
15 TraesCS6B01G006200 chr1D 84.627 657 80 17 2471 3113 41859998 41859349 4.680000e-178 634.0
16 TraesCS6B01G006200 chr5B 83.516 546 69 9 2471 3007 18243338 18242805 1.070000e-134 490.0
17 TraesCS6B01G006200 chr7D 94.048 84 5 0 2471 2554 14886604 14886521 9.680000e-26 128.0
18 TraesCS6B01G006200 chr7D 95.000 40 2 0 2475 2514 607117923 607117884 2.770000e-06 63.9
19 TraesCS6B01G006200 chr3D 77.536 138 25 6 2911 3044 597214281 597214146 9.880000e-11 78.7
20 TraesCS6B01G006200 chr3D 83.607 61 10 0 1678 1738 457032531 457032591 1.290000e-04 58.4
21 TraesCS6B01G006200 chr7B 100.000 34 0 0 2477 2510 305501276 305501243 2.770000e-06 63.9
22 TraesCS6B01G006200 chr7A 94.595 37 2 0 2932 2968 558098118 558098082 1.290000e-04 58.4
23 TraesCS6B01G006200 chr7A 76.471 119 21 5 2930 3044 733445922 733446037 1.290000e-04 58.4
24 TraesCS6B01G006200 chr4D 94.595 37 2 0 2932 2968 170674467 170674431 1.290000e-04 58.4
25 TraesCS6B01G006200 chr3B 83.607 61 10 0 1678 1738 603832342 603832402 1.290000e-04 58.4
26 TraesCS6B01G006200 chr3A 83.607 61 10 0 1678 1738 599899198 599899258 1.290000e-04 58.4
27 TraesCS6B01G006200 chr1B 100.000 29 0 0 2934 2962 134645347 134645319 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G006200 chr6B 4450589 4453911 3322 False 6137.00 6137 100.0000 1 3323 1 chr6B.!!$F1 3322
1 TraesCS6B01G006200 chr6B 4458419 4459714 1295 True 829.85 1605 96.1505 857 2136 2 chr6B.!!$R3 1279
2 TraesCS6B01G006200 chr6B 4421648 4422211 563 True 625.00 625 86.6210 1893 2472 1 chr6B.!!$R1 579
3 TraesCS6B01G006200 chr6D 2106784 2108544 1760 True 2230.00 2230 89.5260 679 2472 1 chr6D.!!$R1 1793
4 TraesCS6B01G006200 chr6A 786570 788248 1678 False 2193.00 2193 90.2270 770 2472 1 chr6A.!!$F1 1702
5 TraesCS6B01G006200 chr6A 22070529 22071994 1465 False 1766.00 1766 88.8210 701 2136 1 chr6A.!!$F3 1435
6 TraesCS6B01G006200 chr2B 792389026 792390101 1075 False 1057.00 1057 84.4180 1001 2088 1 chr2B.!!$F1 1087
7 TraesCS6B01G006200 chr2B 773385806 773386648 842 False 339.00 483 84.8215 355 1124 2 chr2B.!!$F2 769
8 TraesCS6B01G006200 chr2D 574925416 574926253 837 False 817.00 817 84.5970 2498 3323 1 chr2D.!!$F1 825
9 TraesCS6B01G006200 chr1D 41859349 41859998 649 True 634.00 634 84.6270 2471 3113 1 chr1D.!!$R1 642
10 TraesCS6B01G006200 chr5B 18242805 18243338 533 True 490.00 490 83.5160 2471 3007 1 chr5B.!!$R1 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
226 227 0.033601 ATATTGGTTGGGCCGCTTGA 60.034 50.0 0.0 0.0 41.21 3.02 F
256 257 0.036164 TGCGGTGCCAAGTATGTCTT 59.964 50.0 0.0 0.0 36.75 3.01 F
270 271 0.321564 TGTCTTCGCCCATTCAGGTG 60.322 55.0 0.0 0.0 38.86 4.00 F
2160 2373 0.326143 AGGAGGAGAAGGAGGAAGCC 60.326 60.0 0.0 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2176 2389 0.331954 TTCTCCTCCACTAGAGCGGT 59.668 55.0 0.00 0.0 41.74 5.68 R
2232 2445 0.249868 TCTTCACCACCTTGTGCTCG 60.250 55.0 0.00 0.0 36.17 5.03 R
2269 2482 0.467804 GCCATCTTGGTCTCCTCCTC 59.532 60.0 0.00 0.0 40.46 3.71 R
3100 3338 0.332632 CTTGCCATGGGAGGGAAAGA 59.667 55.0 15.13 0.0 42.81 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.701205 ACACAATGCTGATACCACTGA 57.299 42.857 0.00 0.00 0.00 3.41
21 22 4.226427 ACACAATGCTGATACCACTGAT 57.774 40.909 0.00 0.00 0.00 2.90
22 23 4.592942 ACACAATGCTGATACCACTGATT 58.407 39.130 0.00 0.00 0.00 2.57
23 24 4.637534 ACACAATGCTGATACCACTGATTC 59.362 41.667 0.00 0.00 0.00 2.52
24 25 4.637091 CACAATGCTGATACCACTGATTCA 59.363 41.667 0.00 0.00 0.00 2.57
25 26 4.880120 ACAATGCTGATACCACTGATTCAG 59.120 41.667 12.17 12.17 38.86 3.02
26 27 5.121105 CAATGCTGATACCACTGATTCAGA 58.879 41.667 20.33 0.00 38.25 3.27
27 28 4.824479 TGCTGATACCACTGATTCAGAA 57.176 40.909 20.33 3.38 38.25 3.02
28 29 5.164620 TGCTGATACCACTGATTCAGAAA 57.835 39.130 20.33 3.05 38.25 2.52
29 30 4.937620 TGCTGATACCACTGATTCAGAAAC 59.062 41.667 20.33 6.04 38.25 2.78
30 31 4.937620 GCTGATACCACTGATTCAGAAACA 59.062 41.667 20.33 9.62 38.25 2.83
31 32 5.163814 GCTGATACCACTGATTCAGAAACAC 60.164 44.000 20.33 7.41 38.25 3.32
32 33 4.929211 TGATACCACTGATTCAGAAACACG 59.071 41.667 20.33 3.43 35.18 4.49
33 34 3.469008 ACCACTGATTCAGAAACACGA 57.531 42.857 20.33 0.00 35.18 4.35
34 35 4.008074 ACCACTGATTCAGAAACACGAT 57.992 40.909 20.33 0.00 35.18 3.73
35 36 4.389374 ACCACTGATTCAGAAACACGATT 58.611 39.130 20.33 0.00 35.18 3.34
36 37 4.821805 ACCACTGATTCAGAAACACGATTT 59.178 37.500 20.33 0.00 35.18 2.17
37 38 5.049405 ACCACTGATTCAGAAACACGATTTC 60.049 40.000 20.33 8.32 35.18 2.17
38 39 5.049474 CCACTGATTCAGAAACACGATTTCA 60.049 40.000 20.33 0.74 35.18 2.69
39 40 6.429624 CACTGATTCAGAAACACGATTTCAA 58.570 36.000 20.33 6.12 35.18 2.69
40 41 7.080099 CACTGATTCAGAAACACGATTTCAAT 58.920 34.615 20.33 9.51 35.18 2.57
41 42 7.592533 CACTGATTCAGAAACACGATTTCAATT 59.407 33.333 20.33 4.26 35.18 2.32
42 43 7.592533 ACTGATTCAGAAACACGATTTCAATTG 59.407 33.333 20.33 0.00 35.18 2.32
43 44 7.424803 TGATTCAGAAACACGATTTCAATTGT 58.575 30.769 15.79 0.00 33.28 2.71
44 45 7.591057 TGATTCAGAAACACGATTTCAATTGTC 59.409 33.333 15.79 0.00 30.61 3.18
45 46 6.618287 TCAGAAACACGATTTCAATTGTCT 57.382 33.333 15.79 0.00 30.61 3.41
46 47 7.026631 TCAGAAACACGATTTCAATTGTCTT 57.973 32.000 15.79 0.00 30.61 3.01
47 48 7.479980 TCAGAAACACGATTTCAATTGTCTTT 58.520 30.769 15.79 0.00 30.61 2.52
48 49 7.643764 TCAGAAACACGATTTCAATTGTCTTTC 59.356 33.333 15.79 10.50 37.67 2.62
49 50 7.645340 CAGAAACACGATTTCAATTGTCTTTCT 59.355 33.333 13.46 13.46 43.13 2.52
50 51 8.836413 AGAAACACGATTTCAATTGTCTTTCTA 58.164 29.630 15.99 0.00 41.83 2.10
51 52 9.612620 GAAACACGATTTCAATTGTCTTTCTAT 57.387 29.630 5.13 0.00 36.03 1.98
52 53 9.612620 AAACACGATTTCAATTGTCTTTCTATC 57.387 29.630 5.13 0.00 30.61 2.08
53 54 8.553459 ACACGATTTCAATTGTCTTTCTATCT 57.447 30.769 5.13 0.00 30.61 1.98
54 55 9.653287 ACACGATTTCAATTGTCTTTCTATCTA 57.347 29.630 5.13 0.00 30.61 1.98
57 58 9.625009 CGATTTCAATTGTCTTTCTATCTAACG 57.375 33.333 5.13 0.00 0.00 3.18
61 62 8.561932 TCAATTGTCTTTCTATCTAACGATCG 57.438 34.615 14.88 14.88 0.00 3.69
62 63 8.188799 TCAATTGTCTTTCTATCTAACGATCGT 58.811 33.333 16.60 16.60 0.00 3.73
63 64 8.473016 CAATTGTCTTTCTATCTAACGATCGTC 58.527 37.037 22.98 4.48 0.00 4.20
64 65 6.057627 TGTCTTTCTATCTAACGATCGTCC 57.942 41.667 22.98 0.00 0.00 4.79
65 66 5.821470 TGTCTTTCTATCTAACGATCGTCCT 59.179 40.000 22.98 9.66 0.00 3.85
66 67 6.018098 TGTCTTTCTATCTAACGATCGTCCTC 60.018 42.308 22.98 1.76 0.00 3.71
67 68 6.203338 GTCTTTCTATCTAACGATCGTCCTCT 59.797 42.308 22.98 8.43 0.00 3.69
68 69 6.424509 TCTTTCTATCTAACGATCGTCCTCTC 59.575 42.308 22.98 0.00 0.00 3.20
69 70 5.211174 TCTATCTAACGATCGTCCTCTCA 57.789 43.478 22.98 4.81 0.00 3.27
70 71 5.795972 TCTATCTAACGATCGTCCTCTCAT 58.204 41.667 22.98 6.39 0.00 2.90
71 72 5.870433 TCTATCTAACGATCGTCCTCTCATC 59.130 44.000 22.98 0.00 0.00 2.92
72 73 4.074627 TCTAACGATCGTCCTCTCATCT 57.925 45.455 22.98 4.78 0.00 2.90
73 74 3.810386 TCTAACGATCGTCCTCTCATCTG 59.190 47.826 22.98 1.27 0.00 2.90
74 75 1.313772 ACGATCGTCCTCTCATCTGG 58.686 55.000 16.60 0.00 0.00 3.86
75 76 1.313772 CGATCGTCCTCTCATCTGGT 58.686 55.000 7.03 0.00 0.00 4.00
76 77 1.678627 CGATCGTCCTCTCATCTGGTT 59.321 52.381 7.03 0.00 0.00 3.67
77 78 2.099921 CGATCGTCCTCTCATCTGGTTT 59.900 50.000 7.03 0.00 0.00 3.27
78 79 3.712187 GATCGTCCTCTCATCTGGTTTC 58.288 50.000 0.00 0.00 0.00 2.78
79 80 1.472878 TCGTCCTCTCATCTGGTTTCG 59.527 52.381 0.00 0.00 0.00 3.46
80 81 1.469940 CGTCCTCTCATCTGGTTTCGG 60.470 57.143 0.00 0.00 0.00 4.30
81 82 1.134670 GTCCTCTCATCTGGTTTCGGG 60.135 57.143 0.00 0.00 0.00 5.14
82 83 1.195115 CCTCTCATCTGGTTTCGGGA 58.805 55.000 0.00 0.00 0.00 5.14
83 84 1.134670 CCTCTCATCTGGTTTCGGGAC 60.135 57.143 0.00 0.00 0.00 4.46
84 85 1.827969 CTCTCATCTGGTTTCGGGACT 59.172 52.381 0.00 0.00 0.00 3.85
85 86 3.024547 CTCTCATCTGGTTTCGGGACTA 58.975 50.000 0.00 0.00 0.00 2.59
86 87 3.639094 CTCTCATCTGGTTTCGGGACTAT 59.361 47.826 0.00 0.00 0.00 2.12
87 88 4.800023 TCTCATCTGGTTTCGGGACTATA 58.200 43.478 0.00 0.00 0.00 1.31
88 89 4.827835 TCTCATCTGGTTTCGGGACTATAG 59.172 45.833 0.00 0.00 0.00 1.31
89 90 4.800023 TCATCTGGTTTCGGGACTATAGA 58.200 43.478 6.78 0.00 0.00 1.98
90 91 5.205821 TCATCTGGTTTCGGGACTATAGAA 58.794 41.667 6.78 0.00 0.00 2.10
91 92 5.659525 TCATCTGGTTTCGGGACTATAGAAA 59.340 40.000 6.78 0.00 0.00 2.52
92 93 5.593679 TCTGGTTTCGGGACTATAGAAAG 57.406 43.478 6.78 0.00 34.96 2.62
93 94 4.120589 CTGGTTTCGGGACTATAGAAAGC 58.879 47.826 6.78 6.69 46.39 3.51
94 95 4.133013 GGTTTCGGGACTATAGAAAGCA 57.867 45.455 6.78 0.00 45.86 3.91
95 96 4.704965 GGTTTCGGGACTATAGAAAGCAT 58.295 43.478 6.78 0.00 45.86 3.79
96 97 5.123936 GGTTTCGGGACTATAGAAAGCATT 58.876 41.667 6.78 0.00 45.86 3.56
97 98 5.007724 GGTTTCGGGACTATAGAAAGCATTG 59.992 44.000 6.78 0.00 45.86 2.82
98 99 5.353394 TTCGGGACTATAGAAAGCATTGT 57.647 39.130 6.78 0.00 0.00 2.71
99 100 5.353394 TCGGGACTATAGAAAGCATTGTT 57.647 39.130 6.78 0.00 0.00 2.83
100 101 5.741011 TCGGGACTATAGAAAGCATTGTTT 58.259 37.500 6.78 0.00 0.00 2.83
101 102 5.815740 TCGGGACTATAGAAAGCATTGTTTC 59.184 40.000 6.78 4.53 36.79 2.78
102 103 5.817816 CGGGACTATAGAAAGCATTGTTTCT 59.182 40.000 6.78 14.40 46.34 2.52
109 110 4.737054 AGAAAGCATTGTTTCTATTGCCG 58.263 39.130 10.53 0.00 43.53 5.69
110 111 3.508744 AAGCATTGTTTCTATTGCCGG 57.491 42.857 0.00 0.00 35.71 6.13
111 112 2.446435 AGCATTGTTTCTATTGCCGGT 58.554 42.857 1.90 0.00 35.71 5.28
112 113 2.164219 AGCATTGTTTCTATTGCCGGTG 59.836 45.455 1.90 0.00 35.71 4.94
113 114 2.094752 GCATTGTTTCTATTGCCGGTGT 60.095 45.455 1.90 0.00 0.00 4.16
114 115 3.500982 CATTGTTTCTATTGCCGGTGTG 58.499 45.455 1.90 0.00 0.00 3.82
115 116 1.529226 TGTTTCTATTGCCGGTGTGG 58.471 50.000 1.90 0.00 42.50 4.17
116 117 1.202830 TGTTTCTATTGCCGGTGTGGT 60.203 47.619 1.90 0.00 41.21 4.16
117 118 2.038689 TGTTTCTATTGCCGGTGTGGTA 59.961 45.455 1.90 0.00 41.21 3.25
118 119 2.676342 GTTTCTATTGCCGGTGTGGTAG 59.324 50.000 1.90 0.00 41.21 3.18
119 120 1.563924 TCTATTGCCGGTGTGGTAGT 58.436 50.000 1.90 0.00 41.21 2.73
120 121 2.737544 TCTATTGCCGGTGTGGTAGTA 58.262 47.619 1.90 0.00 41.21 1.82
121 122 3.302161 TCTATTGCCGGTGTGGTAGTAT 58.698 45.455 1.90 0.00 41.21 2.12
122 123 4.472496 TCTATTGCCGGTGTGGTAGTATA 58.528 43.478 1.90 0.00 41.21 1.47
123 124 5.081728 TCTATTGCCGGTGTGGTAGTATAT 58.918 41.667 1.90 0.00 41.21 0.86
124 125 6.247676 TCTATTGCCGGTGTGGTAGTATATA 58.752 40.000 1.90 0.00 41.21 0.86
125 126 4.859304 TTGCCGGTGTGGTAGTATATAG 57.141 45.455 1.90 0.00 41.21 1.31
126 127 3.159472 TGCCGGTGTGGTAGTATATAGG 58.841 50.000 1.90 0.00 41.21 2.57
127 128 2.094338 GCCGGTGTGGTAGTATATAGGC 60.094 54.545 1.90 0.00 41.21 3.93
128 129 3.428532 CCGGTGTGGTAGTATATAGGCT 58.571 50.000 0.00 0.00 0.00 4.58
129 130 3.442977 CCGGTGTGGTAGTATATAGGCTC 59.557 52.174 0.00 0.00 0.00 4.70
130 131 3.442977 CGGTGTGGTAGTATATAGGCTCC 59.557 52.174 0.00 0.00 0.00 4.70
131 132 4.675038 GGTGTGGTAGTATATAGGCTCCT 58.325 47.826 0.00 0.00 0.00 3.69
132 133 5.085219 GGTGTGGTAGTATATAGGCTCCTT 58.915 45.833 0.00 0.00 0.00 3.36
133 134 5.185442 GGTGTGGTAGTATATAGGCTCCTTC 59.815 48.000 0.00 0.00 0.00 3.46
134 135 6.011481 GTGTGGTAGTATATAGGCTCCTTCT 58.989 44.000 0.00 0.00 0.00 2.85
135 136 6.010850 TGTGGTAGTATATAGGCTCCTTCTG 58.989 44.000 0.00 0.00 0.00 3.02
136 137 5.419471 GTGGTAGTATATAGGCTCCTTCTGG 59.581 48.000 0.00 0.00 0.00 3.86
137 138 4.957327 GGTAGTATATAGGCTCCTTCTGGG 59.043 50.000 0.00 0.00 0.00 4.45
138 139 4.768807 AGTATATAGGCTCCTTCTGGGT 57.231 45.455 0.00 0.00 36.25 4.51
139 140 4.421131 AGTATATAGGCTCCTTCTGGGTG 58.579 47.826 0.00 0.00 36.25 4.61
140 141 3.637821 ATATAGGCTCCTTCTGGGTGA 57.362 47.619 0.00 0.00 36.25 4.02
141 142 1.501582 ATAGGCTCCTTCTGGGTGAC 58.498 55.000 0.00 0.00 36.89 3.67
153 154 4.675404 GGTGACCTCAACTGTCGG 57.325 61.111 0.00 0.00 35.46 4.79
154 155 1.004918 GGTGACCTCAACTGTCGGG 60.005 63.158 0.00 0.00 35.46 5.14
155 156 1.004918 GTGACCTCAACTGTCGGGG 60.005 63.158 0.00 0.00 35.46 5.73
156 157 2.214216 TGACCTCAACTGTCGGGGG 61.214 63.158 0.00 0.00 35.46 5.40
157 158 1.911766 GACCTCAACTGTCGGGGGA 60.912 63.158 5.44 0.00 0.00 4.81
158 159 1.889530 GACCTCAACTGTCGGGGGAG 61.890 65.000 5.44 0.00 0.00 4.30
159 160 2.266055 CTCAACTGTCGGGGGAGC 59.734 66.667 0.00 0.00 0.00 4.70
160 161 3.649277 CTCAACTGTCGGGGGAGCG 62.649 68.421 0.00 0.00 0.00 5.03
161 162 4.760047 CAACTGTCGGGGGAGCGG 62.760 72.222 0.00 0.00 0.00 5.52
169 170 4.966787 GGGGGAGCGGCAACAACA 62.967 66.667 1.45 0.00 0.00 3.33
170 171 3.670377 GGGGAGCGGCAACAACAC 61.670 66.667 1.45 0.00 0.00 3.32
171 172 3.670377 GGGAGCGGCAACAACACC 61.670 66.667 1.45 0.00 0.00 4.16
172 173 2.904866 GGAGCGGCAACAACACCA 60.905 61.111 1.45 0.00 0.00 4.17
173 174 2.331451 GAGCGGCAACAACACCAC 59.669 61.111 1.45 0.00 0.00 4.16
174 175 2.439338 AGCGGCAACAACACCACA 60.439 55.556 1.45 0.00 0.00 4.17
175 176 1.999071 GAGCGGCAACAACACCACAA 61.999 55.000 1.45 0.00 0.00 3.33
176 177 1.153745 GCGGCAACAACACCACAAA 60.154 52.632 0.00 0.00 0.00 2.83
177 178 0.737715 GCGGCAACAACACCACAAAA 60.738 50.000 0.00 0.00 0.00 2.44
178 179 1.933247 CGGCAACAACACCACAAAAT 58.067 45.000 0.00 0.00 0.00 1.82
179 180 2.275318 CGGCAACAACACCACAAAATT 58.725 42.857 0.00 0.00 0.00 1.82
180 181 2.283884 CGGCAACAACACCACAAAATTC 59.716 45.455 0.00 0.00 0.00 2.17
181 182 3.265791 GGCAACAACACCACAAAATTCA 58.734 40.909 0.00 0.00 0.00 2.57
182 183 3.876320 GGCAACAACACCACAAAATTCAT 59.124 39.130 0.00 0.00 0.00 2.57
183 184 5.053145 GGCAACAACACCACAAAATTCATA 58.947 37.500 0.00 0.00 0.00 2.15
184 185 5.177327 GGCAACAACACCACAAAATTCATAG 59.823 40.000 0.00 0.00 0.00 2.23
185 186 5.177327 GCAACAACACCACAAAATTCATAGG 59.823 40.000 0.00 0.00 0.00 2.57
186 187 6.511416 CAACAACACCACAAAATTCATAGGA 58.489 36.000 0.00 0.00 0.00 2.94
187 188 6.916360 ACAACACCACAAAATTCATAGGAT 57.084 33.333 0.00 0.00 0.00 3.24
188 189 8.303156 CAACAACACCACAAAATTCATAGGATA 58.697 33.333 0.00 0.00 0.00 2.59
189 190 8.055279 ACAACACCACAAAATTCATAGGATAG 57.945 34.615 0.00 0.00 0.00 2.08
190 191 6.699575 ACACCACAAAATTCATAGGATAGC 57.300 37.500 0.00 0.00 0.00 2.97
191 192 5.594317 ACACCACAAAATTCATAGGATAGCC 59.406 40.000 0.00 0.00 0.00 3.93
192 193 4.821805 ACCACAAAATTCATAGGATAGCCG 59.178 41.667 0.00 0.00 39.96 5.52
193 194 4.821805 CCACAAAATTCATAGGATAGCCGT 59.178 41.667 0.00 0.00 39.96 5.68
194 195 5.049405 CCACAAAATTCATAGGATAGCCGTC 60.049 44.000 0.00 0.00 39.96 4.79
195 196 5.760253 CACAAAATTCATAGGATAGCCGTCT 59.240 40.000 0.00 0.00 39.96 4.18
196 197 6.260936 CACAAAATTCATAGGATAGCCGTCTT 59.739 38.462 0.00 0.00 39.96 3.01
197 198 6.828785 ACAAAATTCATAGGATAGCCGTCTTT 59.171 34.615 0.00 0.00 39.96 2.52
198 199 7.339466 ACAAAATTCATAGGATAGCCGTCTTTT 59.661 33.333 0.00 0.00 39.96 2.27
199 200 8.836413 CAAAATTCATAGGATAGCCGTCTTTTA 58.164 33.333 0.00 0.00 39.96 1.52
200 201 9.574516 AAAATTCATAGGATAGCCGTCTTTTAT 57.425 29.630 0.00 0.00 39.96 1.40
201 202 9.574516 AAATTCATAGGATAGCCGTCTTTTATT 57.425 29.630 0.00 0.00 39.96 1.40
202 203 9.574516 AATTCATAGGATAGCCGTCTTTTATTT 57.425 29.630 0.00 0.00 39.96 1.40
203 204 7.962964 TCATAGGATAGCCGTCTTTTATTTG 57.037 36.000 0.00 0.00 39.96 2.32
204 205 7.732025 TCATAGGATAGCCGTCTTTTATTTGA 58.268 34.615 0.00 0.00 39.96 2.69
205 206 8.375506 TCATAGGATAGCCGTCTTTTATTTGAT 58.624 33.333 0.00 0.00 39.96 2.57
206 207 9.653287 CATAGGATAGCCGTCTTTTATTTGATA 57.347 33.333 0.00 0.00 39.96 2.15
214 215 9.131791 AGCCGTCTTTTATTTGATAATATTGGT 57.868 29.630 0.00 0.00 0.00 3.67
215 216 9.744468 GCCGTCTTTTATTTGATAATATTGGTT 57.256 29.630 0.00 0.00 0.00 3.67
220 221 9.271828 CTTTTATTTGATAATATTGGTTGGGCC 57.728 33.333 0.00 0.00 37.90 5.80
221 222 4.927978 TTTGATAATATTGGTTGGGCCG 57.072 40.909 0.00 0.00 41.21 6.13
222 223 2.235016 TGATAATATTGGTTGGGCCGC 58.765 47.619 0.00 0.00 41.21 6.53
223 224 2.158534 TGATAATATTGGTTGGGCCGCT 60.159 45.455 0.00 0.00 41.21 5.52
224 225 2.445682 TAATATTGGTTGGGCCGCTT 57.554 45.000 0.00 0.00 41.21 4.68
225 226 0.823460 AATATTGGTTGGGCCGCTTG 59.177 50.000 0.00 0.00 41.21 4.01
226 227 0.033601 ATATTGGTTGGGCCGCTTGA 60.034 50.000 0.00 0.00 41.21 3.02
227 228 0.679640 TATTGGTTGGGCCGCTTGAG 60.680 55.000 0.00 0.00 41.21 3.02
238 239 3.867771 GCTTGAGCGGTGACTCTG 58.132 61.111 0.00 0.00 37.58 3.35
246 247 4.314440 GGTGACTCTGCGGTGCCA 62.314 66.667 0.00 0.00 0.00 4.92
247 248 2.280797 GTGACTCTGCGGTGCCAA 60.281 61.111 0.00 0.00 0.00 4.52
248 249 2.031012 TGACTCTGCGGTGCCAAG 59.969 61.111 0.00 0.00 0.00 3.61
249 250 2.031163 GACTCTGCGGTGCCAAGT 59.969 61.111 0.00 0.00 0.00 3.16
250 251 1.292223 GACTCTGCGGTGCCAAGTA 59.708 57.895 0.00 0.00 0.00 2.24
251 252 0.108138 GACTCTGCGGTGCCAAGTAT 60.108 55.000 0.00 0.00 0.00 2.12
252 253 0.391661 ACTCTGCGGTGCCAAGTATG 60.392 55.000 0.00 0.00 0.00 2.39
253 254 0.391661 CTCTGCGGTGCCAAGTATGT 60.392 55.000 0.00 0.00 0.00 2.29
254 255 0.391130 TCTGCGGTGCCAAGTATGTC 60.391 55.000 0.00 0.00 0.00 3.06
255 256 0.391661 CTGCGGTGCCAAGTATGTCT 60.392 55.000 0.00 0.00 0.00 3.41
256 257 0.036164 TGCGGTGCCAAGTATGTCTT 59.964 50.000 0.00 0.00 36.75 3.01
257 258 0.727398 GCGGTGCCAAGTATGTCTTC 59.273 55.000 0.00 0.00 33.63 2.87
258 259 0.999406 CGGTGCCAAGTATGTCTTCG 59.001 55.000 0.00 0.00 33.63 3.79
259 260 0.727398 GGTGCCAAGTATGTCTTCGC 59.273 55.000 0.00 0.00 39.95 4.70
260 261 0.727398 GTGCCAAGTATGTCTTCGCC 59.273 55.000 0.00 0.00 39.03 5.54
261 262 0.392461 TGCCAAGTATGTCTTCGCCC 60.392 55.000 0.00 0.00 39.03 6.13
262 263 0.392461 GCCAAGTATGTCTTCGCCCA 60.392 55.000 0.00 0.00 34.92 5.36
263 264 1.747206 GCCAAGTATGTCTTCGCCCAT 60.747 52.381 0.00 0.00 34.92 4.00
264 265 2.643551 CCAAGTATGTCTTCGCCCATT 58.356 47.619 0.00 0.00 33.63 3.16
265 266 2.614057 CCAAGTATGTCTTCGCCCATTC 59.386 50.000 0.00 0.00 33.63 2.67
266 267 3.270027 CAAGTATGTCTTCGCCCATTCA 58.730 45.455 0.00 0.00 33.63 2.57
267 268 3.185246 AGTATGTCTTCGCCCATTCAG 57.815 47.619 0.00 0.00 0.00 3.02
268 269 2.158900 AGTATGTCTTCGCCCATTCAGG 60.159 50.000 0.00 0.00 37.03 3.86
269 270 0.620556 ATGTCTTCGCCCATTCAGGT 59.379 50.000 0.00 0.00 34.66 4.00
270 271 0.321564 TGTCTTCGCCCATTCAGGTG 60.322 55.000 0.00 0.00 38.86 4.00
271 272 1.377202 TCTTCGCCCATTCAGGTGC 60.377 57.895 0.00 0.00 37.33 5.01
272 273 1.377725 CTTCGCCCATTCAGGTGCT 60.378 57.895 0.00 0.00 37.33 4.40
273 274 0.962356 CTTCGCCCATTCAGGTGCTT 60.962 55.000 0.00 0.00 37.33 3.91
274 275 0.539438 TTCGCCCATTCAGGTGCTTT 60.539 50.000 0.00 0.00 37.33 3.51
275 276 1.213537 CGCCCATTCAGGTGCTTTG 59.786 57.895 0.00 0.00 34.66 2.77
276 277 1.526575 CGCCCATTCAGGTGCTTTGT 61.527 55.000 0.00 0.00 34.66 2.83
277 278 0.681175 GCCCATTCAGGTGCTTTGTT 59.319 50.000 0.00 0.00 34.66 2.83
278 279 1.337167 GCCCATTCAGGTGCTTTGTTC 60.337 52.381 0.00 0.00 34.66 3.18
279 280 1.962807 CCCATTCAGGTGCTTTGTTCA 59.037 47.619 0.00 0.00 34.66 3.18
280 281 2.288395 CCCATTCAGGTGCTTTGTTCAC 60.288 50.000 0.00 0.00 34.66 3.18
288 289 3.782889 GTGCTTTGTTCACCTCTTGTT 57.217 42.857 0.00 0.00 0.00 2.83
289 290 4.893424 GTGCTTTGTTCACCTCTTGTTA 57.107 40.909 0.00 0.00 0.00 2.41
290 291 4.848757 GTGCTTTGTTCACCTCTTGTTAG 58.151 43.478 0.00 0.00 0.00 2.34
291 292 3.315191 TGCTTTGTTCACCTCTTGTTAGC 59.685 43.478 0.00 0.00 0.00 3.09
292 293 3.315191 GCTTTGTTCACCTCTTGTTAGCA 59.685 43.478 0.00 0.00 0.00 3.49
293 294 4.789802 GCTTTGTTCACCTCTTGTTAGCAC 60.790 45.833 0.00 0.00 0.00 4.40
294 295 3.552132 TGTTCACCTCTTGTTAGCACA 57.448 42.857 0.00 0.00 0.00 4.57
295 296 4.085357 TGTTCACCTCTTGTTAGCACAT 57.915 40.909 0.00 0.00 31.06 3.21
296 297 5.222079 TGTTCACCTCTTGTTAGCACATA 57.778 39.130 0.00 0.00 31.06 2.29
297 298 5.804639 TGTTCACCTCTTGTTAGCACATAT 58.195 37.500 0.00 0.00 31.06 1.78
298 299 5.874810 TGTTCACCTCTTGTTAGCACATATC 59.125 40.000 0.00 0.00 31.06 1.63
299 300 4.682787 TCACCTCTTGTTAGCACATATCG 58.317 43.478 0.00 0.00 31.06 2.92
300 301 3.246226 CACCTCTTGTTAGCACATATCGC 59.754 47.826 0.00 0.00 31.06 4.58
301 302 3.118775 ACCTCTTGTTAGCACATATCGCA 60.119 43.478 0.00 0.00 31.06 5.10
302 303 4.060900 CCTCTTGTTAGCACATATCGCAT 58.939 43.478 0.00 0.00 31.06 4.73
303 304 4.084171 CCTCTTGTTAGCACATATCGCATG 60.084 45.833 0.00 0.00 31.06 4.06
304 305 4.692228 TCTTGTTAGCACATATCGCATGA 58.308 39.130 0.00 0.00 31.06 3.07
305 306 5.299949 TCTTGTTAGCACATATCGCATGAT 58.700 37.500 0.00 0.00 38.67 2.45
306 307 6.454795 TCTTGTTAGCACATATCGCATGATA 58.545 36.000 0.00 0.00 41.19 2.15
307 308 6.928492 TCTTGTTAGCACATATCGCATGATAA 59.072 34.615 0.00 0.00 40.37 1.75
308 309 7.603784 TCTTGTTAGCACATATCGCATGATAAT 59.396 33.333 0.00 0.00 40.37 1.28
309 310 7.064060 TGTTAGCACATATCGCATGATAATG 57.936 36.000 0.00 0.00 40.37 1.90
310 311 6.092533 TGTTAGCACATATCGCATGATAATGG 59.907 38.462 0.00 0.00 40.37 3.16
311 312 4.582869 AGCACATATCGCATGATAATGGT 58.417 39.130 0.00 0.00 40.37 3.55
312 313 5.733676 AGCACATATCGCATGATAATGGTA 58.266 37.500 0.00 0.00 40.37 3.25
313 314 6.172630 AGCACATATCGCATGATAATGGTAA 58.827 36.000 0.00 0.00 40.37 2.85
314 315 6.314648 AGCACATATCGCATGATAATGGTAAG 59.685 38.462 0.00 0.00 40.37 2.34
315 316 6.092670 GCACATATCGCATGATAATGGTAAGT 59.907 38.462 0.00 0.00 40.37 2.24
316 317 7.361201 GCACATATCGCATGATAATGGTAAGTT 60.361 37.037 0.00 0.00 40.37 2.66
317 318 9.150348 CACATATCGCATGATAATGGTAAGTTA 57.850 33.333 0.00 0.00 40.37 2.24
318 319 9.890629 ACATATCGCATGATAATGGTAAGTTAT 57.109 29.630 0.00 0.00 40.37 1.89
322 323 8.669946 TCGCATGATAATGGTAAGTTATTTGA 57.330 30.769 0.00 0.00 0.00 2.69
323 324 9.283768 TCGCATGATAATGGTAAGTTATTTGAT 57.716 29.630 0.00 0.00 0.00 2.57
360 361 2.716217 AGCCTTGTTATTCAGCCACTC 58.284 47.619 0.00 0.00 0.00 3.51
376 377 2.006415 CTCCCATAGGCCACCCCAA 61.006 63.158 5.01 0.00 35.39 4.12
377 378 1.999634 CTCCCATAGGCCACCCCAAG 62.000 65.000 5.01 0.00 35.39 3.61
386 387 1.455587 CCACCCCAAGCACAACACT 60.456 57.895 0.00 0.00 0.00 3.55
390 391 2.034558 CACCCCAAGCACAACACTTTAG 59.965 50.000 0.00 0.00 0.00 1.85
398 400 2.806244 GCACAACACTTTAGACCGACAT 59.194 45.455 0.00 0.00 0.00 3.06
401 403 5.732247 GCACAACACTTTAGACCGACATTTT 60.732 40.000 0.00 0.00 0.00 1.82
402 404 5.681105 CACAACACTTTAGACCGACATTTTG 59.319 40.000 0.00 0.00 0.00 2.44
416 418 4.566360 CGACATTTTGTTCCTGCTTTTGTT 59.434 37.500 0.00 0.00 0.00 2.83
417 419 5.746245 CGACATTTTGTTCCTGCTTTTGTTA 59.254 36.000 0.00 0.00 0.00 2.41
526 528 5.858381 AGAACATTCAACTGAGAGTGCTTA 58.142 37.500 0.00 0.00 0.00 3.09
529 531 4.999950 ACATTCAACTGAGAGTGCTTAAGG 59.000 41.667 4.29 0.00 0.00 2.69
581 596 3.973657 AGAACAGCAAACATTGAGCTTG 58.026 40.909 0.00 0.00 36.26 4.01
586 601 2.961062 AGCAAACATTGAGCTTGGAGTT 59.039 40.909 0.00 0.00 34.37 3.01
587 602 3.005155 AGCAAACATTGAGCTTGGAGTTC 59.995 43.478 0.00 0.00 34.37 3.01
588 603 3.005155 GCAAACATTGAGCTTGGAGTTCT 59.995 43.478 0.00 0.00 0.00 3.01
589 604 4.500375 GCAAACATTGAGCTTGGAGTTCTT 60.500 41.667 0.00 0.00 0.00 2.52
590 605 5.594926 CAAACATTGAGCTTGGAGTTCTTT 58.405 37.500 0.00 0.00 0.00 2.52
591 606 5.859205 AACATTGAGCTTGGAGTTCTTTT 57.141 34.783 0.00 0.00 0.00 2.27
592 607 5.192327 ACATTGAGCTTGGAGTTCTTTTG 57.808 39.130 0.00 0.00 0.00 2.44
593 608 3.715628 TTGAGCTTGGAGTTCTTTTGC 57.284 42.857 0.00 0.00 0.00 3.68
594 609 2.936202 TGAGCTTGGAGTTCTTTTGCT 58.064 42.857 0.00 0.00 0.00 3.91
595 610 3.290710 TGAGCTTGGAGTTCTTTTGCTT 58.709 40.909 0.00 0.00 0.00 3.91
596 611 3.067180 TGAGCTTGGAGTTCTTTTGCTTG 59.933 43.478 0.00 0.00 0.00 4.01
597 612 2.363359 AGCTTGGAGTTCTTTTGCTTGG 59.637 45.455 0.00 0.00 0.00 3.61
598 613 2.101415 GCTTGGAGTTCTTTTGCTTGGT 59.899 45.455 0.00 0.00 0.00 3.67
611 626 6.371271 TCTTTTGCTTGGTCTTTTTCCTTTTG 59.629 34.615 0.00 0.00 0.00 2.44
616 631 2.698274 TGGTCTTTTTCCTTTTGGCTCC 59.302 45.455 0.00 0.00 40.12 4.70
621 636 3.817709 TTTTCCTTTTGGCTCCTTGTG 57.182 42.857 0.00 0.00 40.12 3.33
624 639 3.140325 TCCTTTTGGCTCCTTGTGTAG 57.860 47.619 0.00 0.00 40.12 2.74
625 640 2.441750 TCCTTTTGGCTCCTTGTGTAGT 59.558 45.455 0.00 0.00 40.12 2.73
626 641 2.554032 CCTTTTGGCTCCTTGTGTAGTG 59.446 50.000 0.00 0.00 0.00 2.74
630 645 1.347707 TGGCTCCTTGTGTAGTGAAGG 59.652 52.381 0.00 0.00 40.26 3.46
643 658 8.740123 TGTGTAGTGAAGGAAGAAAACAATTA 57.260 30.769 0.00 0.00 0.00 1.40
650 665 8.797438 GTGAAGGAAGAAAACAATTATCTCCTT 58.203 33.333 0.00 0.00 35.41 3.36
697 712 3.370953 GGAGGTAGAAACATGAGGTGCAT 60.371 47.826 0.00 0.00 37.85 3.96
698 713 4.265073 GAGGTAGAAACATGAGGTGCATT 58.735 43.478 0.00 0.00 34.15 3.56
712 727 0.745486 TGCATTCCAGCATCTCGTGG 60.745 55.000 0.00 0.00 40.11 4.94
799 832 4.993029 AAAACAAATTGGAGTTGGACGA 57.007 36.364 0.00 0.00 0.00 4.20
800 833 5.529581 AAAACAAATTGGAGTTGGACGAT 57.470 34.783 0.00 0.00 0.00 3.73
801 834 6.642707 AAAACAAATTGGAGTTGGACGATA 57.357 33.333 0.00 0.00 0.00 2.92
802 835 5.880054 AACAAATTGGAGTTGGACGATAG 57.120 39.130 0.00 0.00 46.19 2.08
803 836 3.689649 ACAAATTGGAGTTGGACGATAGC 59.310 43.478 0.00 0.00 42.67 2.97
948 1095 1.338337 CCATCGATCCTCGTAGCAAGT 59.662 52.381 0.00 0.00 41.35 3.16
949 1096 2.389059 CATCGATCCTCGTAGCAAGTG 58.611 52.381 0.00 0.00 41.35 3.16
981 1133 1.412710 GTGAGCATACCATCGGAGGAA 59.587 52.381 0.93 0.00 0.00 3.36
985 1137 2.975489 AGCATACCATCGGAGGAAGAAT 59.025 45.455 0.93 0.00 0.00 2.40
988 1140 5.249393 AGCATACCATCGGAGGAAGAATAAT 59.751 40.000 0.93 0.00 0.00 1.28
989 1141 5.582665 GCATACCATCGGAGGAAGAATAATC 59.417 44.000 0.93 0.00 0.00 1.75
990 1142 4.625607 ACCATCGGAGGAAGAATAATCC 57.374 45.455 0.93 0.00 37.22 3.01
1059 1221 2.757099 ATCCCGGCGGAGTACGTT 60.757 61.111 30.79 1.69 43.12 3.99
1342 1504 1.668101 GCCGATCGAGGACAAGGAGT 61.668 60.000 18.66 0.00 0.00 3.85
1428 1590 1.874345 GCGAGGACGTGAAGAGGGAA 61.874 60.000 0.00 0.00 41.98 3.97
1899 2067 3.622826 AACGGGCGCTACACCAGT 61.623 61.111 7.64 0.00 37.17 4.00
2013 2181 2.394563 GCCAGAGCTCGTTGAAGGC 61.395 63.158 8.37 12.08 35.50 4.35
2088 2256 1.801178 CGCAAGGTCCTCAAGAAGAAC 59.199 52.381 0.00 0.00 0.00 3.01
2144 2357 3.760035 GGTCGCCGCTCAAGAGGA 61.760 66.667 3.76 0.00 37.14 3.71
2145 2358 2.202676 GTCGCCGCTCAAGAGGAG 60.203 66.667 3.76 0.32 46.93 3.69
2146 2359 3.452786 TCGCCGCTCAAGAGGAGG 61.453 66.667 3.76 0.00 44.22 4.30
2147 2360 3.452786 CGCCGCTCAAGAGGAGGA 61.453 66.667 3.76 0.00 44.22 3.71
2148 2361 2.498726 GCCGCTCAAGAGGAGGAG 59.501 66.667 3.76 0.00 44.22 3.69
2149 2362 2.055042 GCCGCTCAAGAGGAGGAGA 61.055 63.158 3.76 0.00 44.22 3.71
2150 2363 1.608717 GCCGCTCAAGAGGAGGAGAA 61.609 60.000 3.76 0.00 44.22 2.87
2151 2364 0.459489 CCGCTCAAGAGGAGGAGAAG 59.541 60.000 0.00 0.00 44.22 2.85
2152 2365 0.459489 CGCTCAAGAGGAGGAGAAGG 59.541 60.000 0.00 0.00 44.22 3.46
2153 2366 1.859302 GCTCAAGAGGAGGAGAAGGA 58.141 55.000 0.00 0.00 44.22 3.36
2154 2367 1.756538 GCTCAAGAGGAGGAGAAGGAG 59.243 57.143 0.00 0.00 44.22 3.69
2155 2368 2.387757 CTCAAGAGGAGGAGAAGGAGG 58.612 57.143 0.00 0.00 40.13 4.30
2156 2369 2.003830 TCAAGAGGAGGAGAAGGAGGA 58.996 52.381 0.00 0.00 0.00 3.71
2157 2370 2.383683 TCAAGAGGAGGAGAAGGAGGAA 59.616 50.000 0.00 0.00 0.00 3.36
2158 2371 2.765699 CAAGAGGAGGAGAAGGAGGAAG 59.234 54.545 0.00 0.00 0.00 3.46
2159 2372 1.119684 GAGGAGGAGAAGGAGGAAGC 58.880 60.000 0.00 0.00 0.00 3.86
2160 2373 0.326143 AGGAGGAGAAGGAGGAAGCC 60.326 60.000 0.00 0.00 0.00 4.35
2161 2374 0.618968 GGAGGAGAAGGAGGAAGCCA 60.619 60.000 0.00 0.00 0.00 4.75
2162 2375 0.539518 GAGGAGAAGGAGGAAGCCAC 59.460 60.000 0.00 0.00 0.00 5.01
2163 2376 1.219393 GGAGAAGGAGGAAGCCACG 59.781 63.158 0.00 0.00 0.00 4.94
2164 2377 1.258445 GGAGAAGGAGGAAGCCACGA 61.258 60.000 0.00 0.00 0.00 4.35
2165 2378 0.608640 GAGAAGGAGGAAGCCACGAA 59.391 55.000 0.00 0.00 0.00 3.85
2166 2379 0.610687 AGAAGGAGGAAGCCACGAAG 59.389 55.000 0.00 0.00 0.00 3.79
2167 2380 1.003233 AAGGAGGAAGCCACGAAGC 60.003 57.895 0.00 0.00 0.00 3.86
2169 2382 1.743252 GGAGGAAGCCACGAAGCTG 60.743 63.158 4.76 0.00 44.11 4.24
2170 2383 2.359230 AGGAAGCCACGAAGCTGC 60.359 61.111 4.76 2.99 44.11 5.25
2172 2385 3.793144 GAAGCCACGAAGCTGCCG 61.793 66.667 4.76 7.16 44.11 5.69
2176 2389 4.680237 CCACGAAGCTGCCGGTCA 62.680 66.667 1.90 0.00 0.00 4.02
2177 2390 3.414700 CACGAAGCTGCCGGTCAC 61.415 66.667 1.90 0.00 0.00 3.67
2178 2391 4.681978 ACGAAGCTGCCGGTCACC 62.682 66.667 1.90 0.00 0.00 4.02
2184 2397 3.449227 CTGCCGGTCACCGCTCTA 61.449 66.667 12.05 0.00 46.86 2.43
2185 2398 3.417275 CTGCCGGTCACCGCTCTAG 62.417 68.421 12.05 1.56 46.86 2.43
2186 2399 3.450115 GCCGGTCACCGCTCTAGT 61.450 66.667 12.05 0.00 46.86 2.57
2199 2412 2.741145 GCTCTAGTGGAGGAGAAGGAA 58.259 52.381 5.58 0.00 42.08 3.36
2261 2474 1.280421 GGTGGTGAAGAAGGAGCAGAT 59.720 52.381 0.00 0.00 0.00 2.90
2262 2475 2.626840 GTGGTGAAGAAGGAGCAGATC 58.373 52.381 0.00 0.00 0.00 2.75
2263 2476 2.027745 GTGGTGAAGAAGGAGCAGATCA 60.028 50.000 0.00 0.00 0.00 2.92
2269 2482 3.891422 AGAAGGAGCAGATCAGTGAAG 57.109 47.619 0.00 0.00 0.00 3.02
2278 2491 3.630168 CAGATCAGTGAAGAGGAGGAGA 58.370 50.000 0.00 0.00 0.00 3.71
2414 2633 4.662468 TGCTATTGAGAGGTGATCAGAC 57.338 45.455 0.00 0.00 0.00 3.51
2458 2679 6.812656 TGCTTTATTGTGGCATTTGTAATGAG 59.187 34.615 3.70 0.00 0.00 2.90
2482 2703 9.925268 GAGTTTTAGTAATGTTGACGAAAAAGA 57.075 29.630 0.00 0.00 34.56 2.52
2549 2770 0.092351 GATACAAACGCGACACCACG 59.908 55.000 15.93 0.00 0.00 4.94
2560 2781 1.812686 GACACCACGCACACCCTAGA 61.813 60.000 0.00 0.00 0.00 2.43
2577 2798 8.221944 ACACCCTAGACTAGATATATAGATGCC 58.778 40.741 11.31 0.00 0.00 4.40
2578 2799 7.668052 CACCCTAGACTAGATATATAGATGCCC 59.332 44.444 11.31 0.00 0.00 5.36
2582 2803 9.295825 CTAGACTAGATATATAGATGCCCAAGG 57.704 40.741 11.31 0.00 0.00 3.61
2604 2825 3.384789 GTCAGCTACATCCAGATACCACA 59.615 47.826 0.00 0.00 0.00 4.17
2606 2827 4.100035 TCAGCTACATCCAGATACCACAAG 59.900 45.833 0.00 0.00 0.00 3.16
2607 2828 3.134458 GCTACATCCAGATACCACAAGC 58.866 50.000 0.00 0.00 0.00 4.01
2608 2829 3.432186 GCTACATCCAGATACCACAAGCA 60.432 47.826 0.00 0.00 0.00 3.91
2630 2851 6.478344 AGCAAAACGAATGATAAGCAACAAAA 59.522 30.769 0.00 0.00 0.00 2.44
2639 2860 5.587289 TGATAAGCAACAAAACACCACTTC 58.413 37.500 0.00 0.00 0.00 3.01
2668 2890 2.363788 GGCATAGCCGAATATCGACA 57.636 50.000 0.58 0.00 43.74 4.35
2685 2907 2.034221 AAGCCGAGGCCTCCAAAC 59.966 61.111 27.20 13.46 43.17 2.93
2695 2917 1.530655 CCTCCAAACCGGTGCCTTT 60.531 57.895 8.52 0.00 35.57 3.11
2711 2933 3.611766 CCTTTAGGAAGGTCACGACAT 57.388 47.619 0.00 0.00 46.16 3.06
2712 2934 4.730949 CCTTTAGGAAGGTCACGACATA 57.269 45.455 0.00 0.00 46.16 2.29
2714 2936 3.795623 TTAGGAAGGTCACGACATAGC 57.204 47.619 0.00 0.00 0.00 2.97
2715 2937 0.456221 AGGAAGGTCACGACATAGCG 59.544 55.000 0.00 0.00 37.29 4.26
2716 2938 0.172803 GGAAGGTCACGACATAGCGT 59.827 55.000 0.00 0.00 46.88 5.07
2881 3111 1.002888 CCCTAGCTCGCATGATCCAAT 59.997 52.381 0.00 0.00 0.00 3.16
2896 3126 3.275617 TCCAATCCCGAAACATGGTAG 57.724 47.619 0.00 0.00 32.90 3.18
2924 3154 1.477685 CCTTACCACCACCACCGACT 61.478 60.000 0.00 0.00 0.00 4.18
2970 3200 1.146930 CACGGCCATGATAGCTGGT 59.853 57.895 2.24 0.00 41.10 4.00
2973 3207 1.699634 ACGGCCATGATAGCTGGTATT 59.300 47.619 2.24 0.00 41.10 1.89
3045 3280 3.118454 CACGGCATCCACGACCAC 61.118 66.667 0.00 0.00 34.93 4.16
3097 3335 2.276732 CTGGCAAAGGAGAAAGGTCA 57.723 50.000 0.00 0.00 0.00 4.02
3098 3336 2.800250 CTGGCAAAGGAGAAAGGTCAT 58.200 47.619 0.00 0.00 0.00 3.06
3100 3338 3.575687 CTGGCAAAGGAGAAAGGTCATTT 59.424 43.478 0.00 0.00 30.75 2.32
3146 3384 4.342951 AGAGATCTTCTGAGCAGAGGAATG 59.657 45.833 14.95 0.06 44.90 2.67
3166 3404 2.125512 GAGAATCGCACCACCGCT 60.126 61.111 0.00 0.00 0.00 5.52
3188 3426 4.278513 CGTTGCCCCCTCCACCAA 62.279 66.667 0.00 0.00 0.00 3.67
3193 3431 3.661648 CCCCCTCCACCAACCCAG 61.662 72.222 0.00 0.00 0.00 4.45
3211 3449 2.038490 GGGACCACGGTAGAGGGT 59.962 66.667 0.00 0.00 37.70 4.34
3213 3451 2.577593 GACCACGGTAGAGGGTGC 59.422 66.667 0.00 0.00 34.39 5.01
3259 3497 4.389576 GCGTTGCTGCAAGGTCCG 62.390 66.667 28.85 22.51 32.67 4.79
3287 3525 2.607771 CCAAATGCCTTTGAACCAGTCG 60.608 50.000 15.13 0.00 43.71 4.18
3290 3528 2.966309 GCCTTTGAACCAGTCGCCG 61.966 63.158 0.00 0.00 0.00 6.46
3319 3557 1.303888 CACCTCCCAGCATGCAACT 60.304 57.895 21.98 0.00 31.97 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.701205 TCAGTGGTATCAGCATTGTGT 57.299 42.857 0.00 0.00 35.29 3.72
1 2 4.637091 TGAATCAGTGGTATCAGCATTGTG 59.363 41.667 0.00 0.00 35.29 3.33
2 3 4.847198 TGAATCAGTGGTATCAGCATTGT 58.153 39.130 0.00 0.00 35.29 2.71
3 4 5.121105 TCTGAATCAGTGGTATCAGCATTG 58.879 41.667 10.36 0.00 39.27 2.82
6 7 4.824479 TTCTGAATCAGTGGTATCAGCA 57.176 40.909 10.36 3.54 39.27 4.41
7 8 4.937620 TGTTTCTGAATCAGTGGTATCAGC 59.062 41.667 10.36 4.15 39.27 4.26
8 9 5.062683 CGTGTTTCTGAATCAGTGGTATCAG 59.937 44.000 10.36 11.98 40.46 2.90
9 10 4.929211 CGTGTTTCTGAATCAGTGGTATCA 59.071 41.667 10.36 0.71 32.61 2.15
10 11 5.168569 TCGTGTTTCTGAATCAGTGGTATC 58.831 41.667 10.36 0.00 32.61 2.24
11 12 5.147330 TCGTGTTTCTGAATCAGTGGTAT 57.853 39.130 10.36 0.00 32.61 2.73
12 13 4.594123 TCGTGTTTCTGAATCAGTGGTA 57.406 40.909 10.36 0.00 32.61 3.25
13 14 3.469008 TCGTGTTTCTGAATCAGTGGT 57.531 42.857 10.36 0.00 32.61 4.16
14 15 5.049474 TGAAATCGTGTTTCTGAATCAGTGG 60.049 40.000 10.36 0.00 32.61 4.00
15 16 5.989249 TGAAATCGTGTTTCTGAATCAGTG 58.011 37.500 10.36 0.00 32.61 3.66
16 17 6.618287 TTGAAATCGTGTTTCTGAATCAGT 57.382 33.333 10.36 0.00 32.61 3.41
17 18 7.592533 ACAATTGAAATCGTGTTTCTGAATCAG 59.407 33.333 13.59 3.38 0.00 2.90
18 19 7.424803 ACAATTGAAATCGTGTTTCTGAATCA 58.575 30.769 13.59 0.00 0.00 2.57
19 20 7.805071 AGACAATTGAAATCGTGTTTCTGAATC 59.195 33.333 13.59 0.00 0.00 2.52
20 21 7.651808 AGACAATTGAAATCGTGTTTCTGAAT 58.348 30.769 13.59 6.66 0.00 2.57
21 22 7.026631 AGACAATTGAAATCGTGTTTCTGAA 57.973 32.000 13.59 0.00 0.00 3.02
22 23 6.618287 AGACAATTGAAATCGTGTTTCTGA 57.382 33.333 13.59 6.46 0.00 3.27
23 24 7.645340 AGAAAGACAATTGAAATCGTGTTTCTG 59.355 33.333 13.59 8.75 45.08 3.02
24 25 7.707104 AGAAAGACAATTGAAATCGTGTTTCT 58.293 30.769 13.59 11.44 43.25 2.52
25 26 7.914537 AGAAAGACAATTGAAATCGTGTTTC 57.085 32.000 13.59 8.92 40.20 2.78
26 27 9.612620 GATAGAAAGACAATTGAAATCGTGTTT 57.387 29.630 13.59 0.00 0.00 2.83
27 28 9.003658 AGATAGAAAGACAATTGAAATCGTGTT 57.996 29.630 13.59 0.00 0.00 3.32
28 29 8.553459 AGATAGAAAGACAATTGAAATCGTGT 57.447 30.769 13.59 0.00 0.00 4.49
31 32 9.625009 CGTTAGATAGAAAGACAATTGAAATCG 57.375 33.333 13.59 0.00 0.00 3.34
35 36 9.020813 CGATCGTTAGATAGAAAGACAATTGAA 57.979 33.333 13.59 0.00 37.19 2.69
36 37 8.188799 ACGATCGTTAGATAGAAAGACAATTGA 58.811 33.333 16.60 0.00 37.19 2.57
37 38 8.341477 ACGATCGTTAGATAGAAAGACAATTG 57.659 34.615 16.60 3.24 37.19 2.32
38 39 7.648510 GGACGATCGTTAGATAGAAAGACAATT 59.351 37.037 23.63 0.00 37.19 2.32
39 40 7.013464 AGGACGATCGTTAGATAGAAAGACAAT 59.987 37.037 23.63 0.00 37.19 2.71
40 41 6.318144 AGGACGATCGTTAGATAGAAAGACAA 59.682 38.462 23.63 0.00 37.19 3.18
41 42 5.821470 AGGACGATCGTTAGATAGAAAGACA 59.179 40.000 23.63 0.00 37.19 3.41
42 43 6.203338 AGAGGACGATCGTTAGATAGAAAGAC 59.797 42.308 23.63 4.17 37.19 3.01
43 44 6.289834 AGAGGACGATCGTTAGATAGAAAGA 58.710 40.000 23.63 0.00 37.19 2.52
44 45 6.203145 TGAGAGGACGATCGTTAGATAGAAAG 59.797 42.308 23.63 0.00 37.19 2.62
45 46 6.053650 TGAGAGGACGATCGTTAGATAGAAA 58.946 40.000 23.63 0.44 37.19 2.52
46 47 5.608449 TGAGAGGACGATCGTTAGATAGAA 58.392 41.667 23.63 1.91 37.19 2.10
47 48 5.211174 TGAGAGGACGATCGTTAGATAGA 57.789 43.478 23.63 1.45 37.19 1.98
48 49 5.872617 AGATGAGAGGACGATCGTTAGATAG 59.127 44.000 23.63 0.00 37.19 2.08
49 50 5.639931 CAGATGAGAGGACGATCGTTAGATA 59.360 44.000 23.63 8.24 37.19 1.98
50 51 4.454161 CAGATGAGAGGACGATCGTTAGAT 59.546 45.833 23.63 9.40 40.38 1.98
51 52 3.810386 CAGATGAGAGGACGATCGTTAGA 59.190 47.826 23.63 4.11 0.00 2.10
52 53 3.058570 CCAGATGAGAGGACGATCGTTAG 60.059 52.174 23.63 0.89 0.00 2.34
53 54 2.879026 CCAGATGAGAGGACGATCGTTA 59.121 50.000 23.63 5.55 0.00 3.18
54 55 1.678627 CCAGATGAGAGGACGATCGTT 59.321 52.381 23.63 7.27 0.00 3.85
55 56 1.313772 CCAGATGAGAGGACGATCGT 58.686 55.000 22.97 22.97 0.00 3.73
56 57 1.313772 ACCAGATGAGAGGACGATCG 58.686 55.000 14.88 14.88 0.00 3.69
57 58 3.712187 GAAACCAGATGAGAGGACGATC 58.288 50.000 0.00 0.00 0.00 3.69
58 59 2.099921 CGAAACCAGATGAGAGGACGAT 59.900 50.000 0.00 0.00 0.00 3.73
59 60 1.472878 CGAAACCAGATGAGAGGACGA 59.527 52.381 0.00 0.00 0.00 4.20
60 61 1.469940 CCGAAACCAGATGAGAGGACG 60.470 57.143 0.00 0.00 0.00 4.79
61 62 1.134670 CCCGAAACCAGATGAGAGGAC 60.135 57.143 0.00 0.00 0.00 3.85
62 63 1.195115 CCCGAAACCAGATGAGAGGA 58.805 55.000 0.00 0.00 0.00 3.71
63 64 1.134670 GTCCCGAAACCAGATGAGAGG 60.135 57.143 0.00 0.00 0.00 3.69
64 65 1.827969 AGTCCCGAAACCAGATGAGAG 59.172 52.381 0.00 0.00 0.00 3.20
65 66 1.938585 AGTCCCGAAACCAGATGAGA 58.061 50.000 0.00 0.00 0.00 3.27
66 67 4.827835 TCTATAGTCCCGAAACCAGATGAG 59.172 45.833 0.00 0.00 0.00 2.90
67 68 4.800023 TCTATAGTCCCGAAACCAGATGA 58.200 43.478 0.00 0.00 0.00 2.92
68 69 5.531122 TTCTATAGTCCCGAAACCAGATG 57.469 43.478 0.00 0.00 0.00 2.90
69 70 5.453480 GCTTTCTATAGTCCCGAAACCAGAT 60.453 44.000 0.00 0.00 0.00 2.90
70 71 4.142004 GCTTTCTATAGTCCCGAAACCAGA 60.142 45.833 0.00 0.00 0.00 3.86
71 72 4.120589 GCTTTCTATAGTCCCGAAACCAG 58.879 47.826 0.00 0.00 0.00 4.00
72 73 3.516300 TGCTTTCTATAGTCCCGAAACCA 59.484 43.478 0.00 0.00 0.00 3.67
73 74 4.133013 TGCTTTCTATAGTCCCGAAACC 57.867 45.455 0.00 0.00 0.00 3.27
74 75 5.585047 ACAATGCTTTCTATAGTCCCGAAAC 59.415 40.000 0.00 0.00 0.00 2.78
75 76 5.741011 ACAATGCTTTCTATAGTCCCGAAA 58.259 37.500 0.00 0.00 0.00 3.46
76 77 5.353394 ACAATGCTTTCTATAGTCCCGAA 57.647 39.130 0.00 0.00 0.00 4.30
77 78 5.353394 AACAATGCTTTCTATAGTCCCGA 57.647 39.130 0.00 0.00 0.00 5.14
78 79 5.817816 AGAAACAATGCTTTCTATAGTCCCG 59.182 40.000 0.00 0.00 38.48 5.14
79 80 8.910351 ATAGAAACAATGCTTTCTATAGTCCC 57.090 34.615 19.46 0.00 45.52 4.46
81 82 9.657121 GCAATAGAAACAATGCTTTCTATAGTC 57.343 33.333 20.36 13.48 46.16 2.59
82 83 8.624776 GGCAATAGAAACAATGCTTTCTATAGT 58.375 33.333 20.36 10.82 46.16 2.12
83 84 7.800380 CGGCAATAGAAACAATGCTTTCTATAG 59.200 37.037 20.36 13.42 46.16 1.31
84 85 7.255104 CCGGCAATAGAAACAATGCTTTCTATA 60.255 37.037 20.36 7.01 46.16 1.31
86 87 5.163663 CCGGCAATAGAAACAATGCTTTCTA 60.164 40.000 15.15 15.15 43.60 2.10
87 88 4.380867 CCGGCAATAGAAACAATGCTTTCT 60.381 41.667 12.72 12.72 42.13 2.52
88 89 3.859386 CCGGCAATAGAAACAATGCTTTC 59.141 43.478 0.00 1.80 38.79 2.62
89 90 3.258123 ACCGGCAATAGAAACAATGCTTT 59.742 39.130 0.00 0.00 38.79 3.51
90 91 2.825532 ACCGGCAATAGAAACAATGCTT 59.174 40.909 0.00 0.00 38.79 3.91
91 92 2.164219 CACCGGCAATAGAAACAATGCT 59.836 45.455 0.00 0.00 38.79 3.79
92 93 2.094752 ACACCGGCAATAGAAACAATGC 60.095 45.455 0.00 0.00 38.06 3.56
93 94 3.500982 CACACCGGCAATAGAAACAATG 58.499 45.455 0.00 0.00 0.00 2.82
94 95 2.491693 CCACACCGGCAATAGAAACAAT 59.508 45.455 0.00 0.00 0.00 2.71
95 96 1.883275 CCACACCGGCAATAGAAACAA 59.117 47.619 0.00 0.00 0.00 2.83
96 97 1.202830 ACCACACCGGCAATAGAAACA 60.203 47.619 0.00 0.00 39.03 2.83
97 98 1.530323 ACCACACCGGCAATAGAAAC 58.470 50.000 0.00 0.00 39.03 2.78
98 99 2.303600 ACTACCACACCGGCAATAGAAA 59.696 45.455 0.00 0.00 39.03 2.52
99 100 1.903860 ACTACCACACCGGCAATAGAA 59.096 47.619 0.00 0.00 39.03 2.10
100 101 1.563924 ACTACCACACCGGCAATAGA 58.436 50.000 0.00 0.00 39.03 1.98
101 102 3.746045 ATACTACCACACCGGCAATAG 57.254 47.619 0.00 0.00 39.03 1.73
102 103 5.419788 CCTATATACTACCACACCGGCAATA 59.580 44.000 0.00 0.00 39.03 1.90
103 104 4.222145 CCTATATACTACCACACCGGCAAT 59.778 45.833 0.00 0.00 39.03 3.56
104 105 3.575256 CCTATATACTACCACACCGGCAA 59.425 47.826 0.00 0.00 39.03 4.52
105 106 3.159472 CCTATATACTACCACACCGGCA 58.841 50.000 0.00 0.00 39.03 5.69
106 107 2.094338 GCCTATATACTACCACACCGGC 60.094 54.545 0.00 0.00 39.03 6.13
107 108 3.428532 AGCCTATATACTACCACACCGG 58.571 50.000 0.00 0.00 42.50 5.28
108 109 3.442977 GGAGCCTATATACTACCACACCG 59.557 52.174 0.00 0.00 0.00 4.94
109 110 4.675038 AGGAGCCTATATACTACCACACC 58.325 47.826 0.00 0.00 0.00 4.16
110 111 6.011481 AGAAGGAGCCTATATACTACCACAC 58.989 44.000 0.00 0.00 0.00 3.82
111 112 6.010850 CAGAAGGAGCCTATATACTACCACA 58.989 44.000 0.00 0.00 0.00 4.17
112 113 5.419471 CCAGAAGGAGCCTATATACTACCAC 59.581 48.000 0.00 0.00 36.89 4.16
113 114 5.518546 CCCAGAAGGAGCCTATATACTACCA 60.519 48.000 0.00 0.00 38.24 3.25
114 115 4.957327 CCCAGAAGGAGCCTATATACTACC 59.043 50.000 0.00 0.00 38.24 3.18
115 116 5.419471 CACCCAGAAGGAGCCTATATACTAC 59.581 48.000 0.00 0.00 39.89 2.73
116 117 5.315109 TCACCCAGAAGGAGCCTATATACTA 59.685 44.000 0.00 0.00 39.89 1.82
117 118 4.108124 TCACCCAGAAGGAGCCTATATACT 59.892 45.833 0.00 0.00 39.89 2.12
118 119 4.221041 GTCACCCAGAAGGAGCCTATATAC 59.779 50.000 0.00 0.00 39.89 1.47
119 120 4.417437 GTCACCCAGAAGGAGCCTATATA 58.583 47.826 0.00 0.00 39.89 0.86
120 121 3.243724 GTCACCCAGAAGGAGCCTATAT 58.756 50.000 0.00 0.00 39.89 0.86
121 122 2.679082 GTCACCCAGAAGGAGCCTATA 58.321 52.381 0.00 0.00 39.89 1.31
122 123 1.501582 GTCACCCAGAAGGAGCCTAT 58.498 55.000 0.00 0.00 39.89 2.57
123 124 0.617820 GGTCACCCAGAAGGAGCCTA 60.618 60.000 0.00 0.00 39.89 3.93
124 125 1.920835 GGTCACCCAGAAGGAGCCT 60.921 63.158 0.00 0.00 39.89 4.58
125 126 1.904990 GAGGTCACCCAGAAGGAGCC 61.905 65.000 0.00 0.00 39.89 4.70
126 127 1.194781 TGAGGTCACCCAGAAGGAGC 61.195 60.000 0.00 0.00 39.89 4.70
127 128 1.002544 GTTGAGGTCACCCAGAAGGAG 59.997 57.143 0.00 0.00 39.89 3.69
128 129 1.056660 GTTGAGGTCACCCAGAAGGA 58.943 55.000 0.00 0.00 39.89 3.36
129 130 1.059913 AGTTGAGGTCACCCAGAAGG 58.940 55.000 0.00 0.00 43.78 3.46
130 131 1.417890 ACAGTTGAGGTCACCCAGAAG 59.582 52.381 0.00 0.00 0.00 2.85
131 132 1.416401 GACAGTTGAGGTCACCCAGAA 59.584 52.381 0.00 0.00 35.36 3.02
132 133 1.048601 GACAGTTGAGGTCACCCAGA 58.951 55.000 0.00 0.00 35.36 3.86
133 134 0.319900 CGACAGTTGAGGTCACCCAG 60.320 60.000 0.00 0.00 34.97 4.45
134 135 1.745890 CGACAGTTGAGGTCACCCA 59.254 57.895 0.00 0.00 34.97 4.51
135 136 1.004918 CCGACAGTTGAGGTCACCC 60.005 63.158 0.00 0.00 34.97 4.61
136 137 1.004918 CCCGACAGTTGAGGTCACC 60.005 63.158 0.00 0.00 34.97 4.02
137 138 1.004918 CCCCGACAGTTGAGGTCAC 60.005 63.158 0.00 0.00 34.97 3.67
138 139 2.214216 CCCCCGACAGTTGAGGTCA 61.214 63.158 0.00 0.00 34.97 4.02
139 140 1.889530 CTCCCCCGACAGTTGAGGTC 61.890 65.000 0.00 0.00 0.00 3.85
140 141 1.913762 CTCCCCCGACAGTTGAGGT 60.914 63.158 0.00 0.00 0.00 3.85
141 142 2.982130 CTCCCCCGACAGTTGAGG 59.018 66.667 0.00 0.00 0.00 3.86
142 143 2.266055 GCTCCCCCGACAGTTGAG 59.734 66.667 0.00 0.00 0.00 3.02
143 144 3.691342 CGCTCCCCCGACAGTTGA 61.691 66.667 0.00 0.00 0.00 3.18
144 145 4.760047 CCGCTCCCCCGACAGTTG 62.760 72.222 0.00 0.00 0.00 3.16
152 153 4.966787 TGTTGTTGCCGCTCCCCC 62.967 66.667 0.00 0.00 0.00 5.40
153 154 3.670377 GTGTTGTTGCCGCTCCCC 61.670 66.667 0.00 0.00 0.00 4.81
154 155 3.670377 GGTGTTGTTGCCGCTCCC 61.670 66.667 0.00 0.00 0.00 4.30
155 156 2.904866 TGGTGTTGTTGCCGCTCC 60.905 61.111 0.00 0.00 0.00 4.70
156 157 1.999071 TTGTGGTGTTGTTGCCGCTC 61.999 55.000 0.00 0.00 36.33 5.03
157 158 1.599606 TTTGTGGTGTTGTTGCCGCT 61.600 50.000 0.00 0.00 36.33 5.52
158 159 0.737715 TTTTGTGGTGTTGTTGCCGC 60.738 50.000 0.00 0.00 35.93 6.53
159 160 1.933247 ATTTTGTGGTGTTGTTGCCG 58.067 45.000 0.00 0.00 0.00 5.69
160 161 3.265791 TGAATTTTGTGGTGTTGTTGCC 58.734 40.909 0.00 0.00 0.00 4.52
161 162 5.177327 CCTATGAATTTTGTGGTGTTGTTGC 59.823 40.000 0.00 0.00 0.00 4.17
162 163 6.511416 TCCTATGAATTTTGTGGTGTTGTTG 58.489 36.000 0.00 0.00 0.00 3.33
163 164 6.723298 TCCTATGAATTTTGTGGTGTTGTT 57.277 33.333 0.00 0.00 0.00 2.83
164 165 6.916360 ATCCTATGAATTTTGTGGTGTTGT 57.084 33.333 0.00 0.00 0.00 3.32
165 166 6.974622 GCTATCCTATGAATTTTGTGGTGTTG 59.025 38.462 0.00 0.00 0.00 3.33
166 167 6.096846 GGCTATCCTATGAATTTTGTGGTGTT 59.903 38.462 0.00 0.00 0.00 3.32
167 168 5.594317 GGCTATCCTATGAATTTTGTGGTGT 59.406 40.000 0.00 0.00 0.00 4.16
168 169 5.277974 CGGCTATCCTATGAATTTTGTGGTG 60.278 44.000 0.00 0.00 0.00 4.17
169 170 4.821805 CGGCTATCCTATGAATTTTGTGGT 59.178 41.667 0.00 0.00 0.00 4.16
170 171 4.821805 ACGGCTATCCTATGAATTTTGTGG 59.178 41.667 0.00 0.00 0.00 4.17
171 172 5.760253 AGACGGCTATCCTATGAATTTTGTG 59.240 40.000 0.00 0.00 0.00 3.33
172 173 5.930135 AGACGGCTATCCTATGAATTTTGT 58.070 37.500 0.00 0.00 0.00 2.83
173 174 6.867662 AAGACGGCTATCCTATGAATTTTG 57.132 37.500 0.00 0.00 0.00 2.44
174 175 7.881775 AAAAGACGGCTATCCTATGAATTTT 57.118 32.000 0.00 0.00 0.00 1.82
175 176 9.574516 AATAAAAGACGGCTATCCTATGAATTT 57.425 29.630 0.00 0.00 0.00 1.82
176 177 9.574516 AAATAAAAGACGGCTATCCTATGAATT 57.425 29.630 0.00 0.00 0.00 2.17
177 178 9.003658 CAAATAAAAGACGGCTATCCTATGAAT 57.996 33.333 0.00 0.00 0.00 2.57
178 179 8.208224 TCAAATAAAAGACGGCTATCCTATGAA 58.792 33.333 0.00 0.00 0.00 2.57
179 180 7.732025 TCAAATAAAAGACGGCTATCCTATGA 58.268 34.615 0.00 0.00 0.00 2.15
180 181 7.962964 TCAAATAAAAGACGGCTATCCTATG 57.037 36.000 0.00 0.00 0.00 2.23
188 189 9.131791 ACCAATATTATCAAATAAAAGACGGCT 57.868 29.630 0.00 0.00 31.44 5.52
189 190 9.744468 AACCAATATTATCAAATAAAAGACGGC 57.256 29.630 0.00 0.00 31.44 5.68
194 195 9.271828 GGCCCAACCAATATTATCAAATAAAAG 57.728 33.333 0.00 0.00 38.86 2.27
195 196 7.928706 CGGCCCAACCAATATTATCAAATAAAA 59.071 33.333 0.00 0.00 39.03 1.52
196 197 7.437748 CGGCCCAACCAATATTATCAAATAAA 58.562 34.615 0.00 0.00 39.03 1.40
197 198 6.517529 GCGGCCCAACCAATATTATCAAATAA 60.518 38.462 0.00 0.00 39.03 1.40
198 199 5.047660 GCGGCCCAACCAATATTATCAAATA 60.048 40.000 0.00 0.00 39.03 1.40
199 200 4.262420 GCGGCCCAACCAATATTATCAAAT 60.262 41.667 0.00 0.00 39.03 2.32
200 201 3.068873 GCGGCCCAACCAATATTATCAAA 59.931 43.478 0.00 0.00 39.03 2.69
201 202 2.625790 GCGGCCCAACCAATATTATCAA 59.374 45.455 0.00 0.00 39.03 2.57
202 203 2.158534 AGCGGCCCAACCAATATTATCA 60.159 45.455 0.00 0.00 39.03 2.15
203 204 2.514803 AGCGGCCCAACCAATATTATC 58.485 47.619 0.00 0.00 39.03 1.75
204 205 2.627699 CAAGCGGCCCAACCAATATTAT 59.372 45.455 0.00 0.00 39.03 1.28
205 206 2.028130 CAAGCGGCCCAACCAATATTA 58.972 47.619 0.00 0.00 39.03 0.98
206 207 0.823460 CAAGCGGCCCAACCAATATT 59.177 50.000 0.00 0.00 39.03 1.28
207 208 0.033601 TCAAGCGGCCCAACCAATAT 60.034 50.000 0.00 0.00 39.03 1.28
208 209 0.679640 CTCAAGCGGCCCAACCAATA 60.680 55.000 0.00 0.00 39.03 1.90
209 210 1.978617 CTCAAGCGGCCCAACCAAT 60.979 57.895 0.00 0.00 39.03 3.16
210 211 2.597217 CTCAAGCGGCCCAACCAA 60.597 61.111 0.00 0.00 39.03 3.67
221 222 2.386660 GCAGAGTCACCGCTCAAGC 61.387 63.158 0.00 0.00 37.94 4.01
222 223 2.091112 CGCAGAGTCACCGCTCAAG 61.091 63.158 0.00 0.00 37.94 3.02
223 224 2.049156 CGCAGAGTCACCGCTCAA 60.049 61.111 0.00 0.00 37.94 3.02
224 225 4.056125 CCGCAGAGTCACCGCTCA 62.056 66.667 0.00 0.00 37.94 4.26
225 226 4.057428 ACCGCAGAGTCACCGCTC 62.057 66.667 0.00 0.00 35.82 5.03
226 227 4.363990 CACCGCAGAGTCACCGCT 62.364 66.667 0.00 0.00 0.00 5.52
229 230 3.825160 TTGGCACCGCAGAGTCACC 62.825 63.158 0.00 0.00 0.00 4.02
230 231 2.280797 TTGGCACCGCAGAGTCAC 60.281 61.111 0.00 0.00 0.00 3.67
231 232 1.468506 TACTTGGCACCGCAGAGTCA 61.469 55.000 0.00 0.00 0.00 3.41
232 233 0.108138 ATACTTGGCACCGCAGAGTC 60.108 55.000 0.00 0.00 0.00 3.36
233 234 0.391661 CATACTTGGCACCGCAGAGT 60.392 55.000 0.00 0.00 0.00 3.24
234 235 0.391661 ACATACTTGGCACCGCAGAG 60.392 55.000 0.00 0.00 0.00 3.35
235 236 0.391130 GACATACTTGGCACCGCAGA 60.391 55.000 0.00 0.00 0.00 4.26
236 237 0.391661 AGACATACTTGGCACCGCAG 60.392 55.000 0.00 0.00 30.96 5.18
237 238 0.036164 AAGACATACTTGGCACCGCA 59.964 50.000 0.00 0.00 37.45 5.69
238 239 0.727398 GAAGACATACTTGGCACCGC 59.273 55.000 0.00 0.00 39.13 5.68
239 240 0.999406 CGAAGACATACTTGGCACCG 59.001 55.000 0.00 0.00 39.13 4.94
244 245 2.332063 ATGGGCGAAGACATACTTGG 57.668 50.000 0.00 0.00 37.00 3.61
245 246 3.270027 TGAATGGGCGAAGACATACTTG 58.730 45.455 0.00 0.00 37.00 3.16
246 247 3.535561 CTGAATGGGCGAAGACATACTT 58.464 45.455 0.00 0.00 37.00 2.24
247 248 2.158900 CCTGAATGGGCGAAGACATACT 60.159 50.000 0.00 0.00 37.00 2.12
248 249 2.213499 CCTGAATGGGCGAAGACATAC 58.787 52.381 0.00 0.00 37.00 2.39
249 250 1.837439 ACCTGAATGGGCGAAGACATA 59.163 47.619 0.00 0.00 37.00 2.29
250 251 0.620556 ACCTGAATGGGCGAAGACAT 59.379 50.000 0.00 0.00 37.00 3.06
251 252 0.321564 CACCTGAATGGGCGAAGACA 60.322 55.000 0.00 0.00 37.00 3.41
252 253 1.648467 GCACCTGAATGGGCGAAGAC 61.648 60.000 0.00 0.00 41.11 3.01
253 254 1.377202 GCACCTGAATGGGCGAAGA 60.377 57.895 0.00 0.00 41.11 2.87
254 255 0.962356 AAGCACCTGAATGGGCGAAG 60.962 55.000 0.00 0.00 41.11 3.79
255 256 0.539438 AAAGCACCTGAATGGGCGAA 60.539 50.000 0.00 0.00 41.11 4.70
256 257 1.074775 AAAGCACCTGAATGGGCGA 59.925 52.632 0.00 0.00 41.11 5.54
257 258 1.213537 CAAAGCACCTGAATGGGCG 59.786 57.895 0.00 0.00 41.11 6.13
258 259 0.681175 AACAAAGCACCTGAATGGGC 59.319 50.000 0.00 0.00 41.11 5.36
259 260 1.962807 TGAACAAAGCACCTGAATGGG 59.037 47.619 0.00 0.00 41.11 4.00
260 261 3.017265 GTGAACAAAGCACCTGAATGG 57.983 47.619 0.00 0.00 42.93 3.16
268 269 3.782889 AACAAGAGGTGAACAAAGCAC 57.217 42.857 0.00 0.00 35.56 4.40
269 270 3.315191 GCTAACAAGAGGTGAACAAAGCA 59.685 43.478 0.00 0.00 0.00 3.91
270 271 3.315191 TGCTAACAAGAGGTGAACAAAGC 59.685 43.478 0.00 0.00 0.00 3.51
271 272 4.335315 TGTGCTAACAAGAGGTGAACAAAG 59.665 41.667 0.00 0.00 31.82 2.77
272 273 4.265893 TGTGCTAACAAGAGGTGAACAAA 58.734 39.130 0.00 0.00 31.82 2.83
273 274 3.879998 TGTGCTAACAAGAGGTGAACAA 58.120 40.909 0.00 0.00 31.82 2.83
274 275 3.552132 TGTGCTAACAAGAGGTGAACA 57.448 42.857 0.00 0.00 31.82 3.18
275 276 5.005779 CGATATGTGCTAACAAGAGGTGAAC 59.994 44.000 0.00 0.00 40.46 3.18
276 277 5.109210 CGATATGTGCTAACAAGAGGTGAA 58.891 41.667 0.00 0.00 40.46 3.18
277 278 4.682787 CGATATGTGCTAACAAGAGGTGA 58.317 43.478 0.00 0.00 40.46 4.02
278 279 3.246226 GCGATATGTGCTAACAAGAGGTG 59.754 47.826 0.00 0.00 40.46 4.00
279 280 3.118775 TGCGATATGTGCTAACAAGAGGT 60.119 43.478 0.00 0.00 40.46 3.85
280 281 3.457234 TGCGATATGTGCTAACAAGAGG 58.543 45.455 0.00 0.00 40.46 3.69
281 282 4.746611 TCATGCGATATGTGCTAACAAGAG 59.253 41.667 0.00 0.00 40.46 2.85
282 283 4.692228 TCATGCGATATGTGCTAACAAGA 58.308 39.130 0.00 0.00 40.46 3.02
283 284 5.602458 ATCATGCGATATGTGCTAACAAG 57.398 39.130 0.00 0.00 40.46 3.16
284 285 7.361116 CCATTATCATGCGATATGTGCTAACAA 60.361 37.037 0.00 0.00 34.84 2.83
285 286 6.092533 CCATTATCATGCGATATGTGCTAACA 59.907 38.462 0.00 0.00 34.07 2.41
286 287 6.092670 ACCATTATCATGCGATATGTGCTAAC 59.907 38.462 0.00 0.00 34.07 2.34
287 288 6.172630 ACCATTATCATGCGATATGTGCTAA 58.827 36.000 0.00 0.00 34.07 3.09
288 289 5.733676 ACCATTATCATGCGATATGTGCTA 58.266 37.500 0.00 0.00 34.07 3.49
289 290 4.582869 ACCATTATCATGCGATATGTGCT 58.417 39.130 0.00 0.00 34.07 4.40
290 291 4.952262 ACCATTATCATGCGATATGTGC 57.048 40.909 0.00 0.00 34.07 4.57
291 292 7.601073 ACTTACCATTATCATGCGATATGTG 57.399 36.000 0.00 0.00 34.07 3.21
292 293 9.890629 ATAACTTACCATTATCATGCGATATGT 57.109 29.630 0.00 0.00 34.07 2.29
296 297 9.283768 TCAAATAACTTACCATTATCATGCGAT 57.716 29.630 0.00 0.00 35.50 4.58
297 298 8.669946 TCAAATAACTTACCATTATCATGCGA 57.330 30.769 0.00 0.00 0.00 5.10
330 331 7.151976 GCTGAATAACAAGGCTTCCTTAAAAA 58.848 34.615 0.00 0.00 42.67 1.94
331 332 6.295067 GGCTGAATAACAAGGCTTCCTTAAAA 60.295 38.462 0.00 0.00 42.67 1.52
332 333 5.185056 GGCTGAATAACAAGGCTTCCTTAAA 59.815 40.000 0.00 0.00 42.67 1.52
333 334 4.705023 GGCTGAATAACAAGGCTTCCTTAA 59.295 41.667 0.00 0.00 42.67 1.85
334 335 4.263727 TGGCTGAATAACAAGGCTTCCTTA 60.264 41.667 0.00 0.00 42.67 2.69
335 336 3.092301 GGCTGAATAACAAGGCTTCCTT 58.908 45.455 0.00 0.00 45.88 3.36
336 337 2.041620 TGGCTGAATAACAAGGCTTCCT 59.958 45.455 0.00 0.00 33.87 3.36
337 338 2.164422 GTGGCTGAATAACAAGGCTTCC 59.836 50.000 0.00 0.00 0.00 3.46
338 339 3.084786 AGTGGCTGAATAACAAGGCTTC 58.915 45.455 0.00 0.00 0.00 3.86
339 340 3.084786 GAGTGGCTGAATAACAAGGCTT 58.915 45.455 0.00 0.00 0.00 4.35
340 341 2.619074 GGAGTGGCTGAATAACAAGGCT 60.619 50.000 0.00 0.00 0.00 4.58
341 342 1.745653 GGAGTGGCTGAATAACAAGGC 59.254 52.381 0.00 0.00 0.00 4.35
342 343 2.290896 TGGGAGTGGCTGAATAACAAGG 60.291 50.000 0.00 0.00 0.00 3.61
343 344 3.071874 TGGGAGTGGCTGAATAACAAG 57.928 47.619 0.00 0.00 0.00 3.16
344 345 3.737559 ATGGGAGTGGCTGAATAACAA 57.262 42.857 0.00 0.00 0.00 2.83
345 346 3.136443 CCTATGGGAGTGGCTGAATAACA 59.864 47.826 0.00 0.00 33.58 2.41
346 347 3.744660 CCTATGGGAGTGGCTGAATAAC 58.255 50.000 0.00 0.00 33.58 1.89
347 348 2.106511 GCCTATGGGAGTGGCTGAATAA 59.893 50.000 0.00 0.00 43.05 1.40
348 349 1.699634 GCCTATGGGAGTGGCTGAATA 59.300 52.381 0.00 0.00 43.05 1.75
349 350 0.475906 GCCTATGGGAGTGGCTGAAT 59.524 55.000 0.00 0.00 43.05 2.57
350 351 1.635817 GGCCTATGGGAGTGGCTGAA 61.636 60.000 0.00 0.00 45.45 3.02
351 352 2.072487 GGCCTATGGGAGTGGCTGA 61.072 63.158 0.00 0.00 45.45 4.26
352 353 2.377810 TGGCCTATGGGAGTGGCTG 61.378 63.158 3.32 0.00 45.45 4.85
353 354 2.042762 TGGCCTATGGGAGTGGCT 59.957 61.111 3.32 0.00 45.45 4.75
360 361 2.603008 CTTGGGGTGGCCTATGGG 59.397 66.667 3.32 0.00 0.00 4.00
376 377 2.159014 TGTCGGTCTAAAGTGTTGTGCT 60.159 45.455 0.00 0.00 0.00 4.40
377 378 2.206750 TGTCGGTCTAAAGTGTTGTGC 58.793 47.619 0.00 0.00 0.00 4.57
386 387 4.023536 GCAGGAACAAAATGTCGGTCTAAA 60.024 41.667 0.00 0.00 0.00 1.85
390 391 1.880027 AGCAGGAACAAAATGTCGGTC 59.120 47.619 0.00 0.00 0.00 4.79
398 400 5.669164 AGGTAACAAAAGCAGGAACAAAA 57.331 34.783 0.00 0.00 41.41 2.44
401 403 8.644374 AATAATAGGTAACAAAAGCAGGAACA 57.356 30.769 0.00 0.00 41.41 3.18
506 508 4.999950 CCTTAAGCACTCTCAGTTGAATGT 59.000 41.667 0.00 0.00 0.00 2.71
507 509 5.240891 TCCTTAAGCACTCTCAGTTGAATG 58.759 41.667 0.00 0.00 0.00 2.67
508 510 5.486526 CTCCTTAAGCACTCTCAGTTGAAT 58.513 41.667 0.00 0.00 0.00 2.57
509 511 4.887748 CTCCTTAAGCACTCTCAGTTGAA 58.112 43.478 0.00 0.00 0.00 2.69
510 512 4.527509 CTCCTTAAGCACTCTCAGTTGA 57.472 45.455 0.00 0.00 0.00 3.18
526 528 0.901580 TAGGGTTTCGGTCGCTCCTT 60.902 55.000 0.00 0.00 0.00 3.36
529 531 1.518792 GCTAGGGTTTCGGTCGCTC 60.519 63.158 0.00 0.00 0.00 5.03
536 538 1.123928 AGAGGATGGCTAGGGTTTCG 58.876 55.000 0.00 0.00 0.00 3.46
538 540 2.270434 TCAGAGGATGGCTAGGGTTT 57.730 50.000 0.00 0.00 0.00 3.27
567 582 4.843220 AGAACTCCAAGCTCAATGTTTG 57.157 40.909 0.00 0.00 36.76 2.93
581 596 4.655762 AAAGACCAAGCAAAAGAACTCC 57.344 40.909 0.00 0.00 0.00 3.85
586 601 5.675684 AAGGAAAAAGACCAAGCAAAAGA 57.324 34.783 0.00 0.00 0.00 2.52
587 602 6.403527 CCAAAAGGAAAAAGACCAAGCAAAAG 60.404 38.462 0.00 0.00 0.00 2.27
588 603 5.414144 CCAAAAGGAAAAAGACCAAGCAAAA 59.586 36.000 0.00 0.00 0.00 2.44
589 604 4.940654 CCAAAAGGAAAAAGACCAAGCAAA 59.059 37.500 0.00 0.00 0.00 3.68
590 605 4.512484 CCAAAAGGAAAAAGACCAAGCAA 58.488 39.130 0.00 0.00 0.00 3.91
591 606 3.681313 GCCAAAAGGAAAAAGACCAAGCA 60.681 43.478 0.00 0.00 0.00 3.91
592 607 2.872245 GCCAAAAGGAAAAAGACCAAGC 59.128 45.455 0.00 0.00 0.00 4.01
593 608 4.371786 GAGCCAAAAGGAAAAAGACCAAG 58.628 43.478 0.00 0.00 0.00 3.61
594 609 3.133901 GGAGCCAAAAGGAAAAAGACCAA 59.866 43.478 0.00 0.00 0.00 3.67
595 610 2.698274 GGAGCCAAAAGGAAAAAGACCA 59.302 45.455 0.00 0.00 0.00 4.02
596 611 2.965831 AGGAGCCAAAAGGAAAAAGACC 59.034 45.455 0.00 0.00 0.00 3.85
597 612 4.141937 ACAAGGAGCCAAAAGGAAAAAGAC 60.142 41.667 0.00 0.00 0.00 3.01
598 613 4.030216 ACAAGGAGCCAAAAGGAAAAAGA 58.970 39.130 0.00 0.00 0.00 2.52
611 626 1.623811 TCCTTCACTACACAAGGAGCC 59.376 52.381 0.00 0.00 42.78 4.70
616 631 6.677781 TGTTTTCTTCCTTCACTACACAAG 57.322 37.500 0.00 0.00 0.00 3.16
624 639 8.341892 AGGAGATAATTGTTTTCTTCCTTCAC 57.658 34.615 0.00 0.00 0.00 3.18
625 640 8.940397 AAGGAGATAATTGTTTTCTTCCTTCA 57.060 30.769 0.00 0.00 29.10 3.02
697 712 2.125552 CGCCACGAGATGCTGGAA 60.126 61.111 0.00 0.00 0.00 3.53
698 713 4.147449 CCGCCACGAGATGCTGGA 62.147 66.667 0.00 0.00 0.00 3.86
730 751 2.944349 TCCTTACCACAAACAAACGGAC 59.056 45.455 0.00 0.00 0.00 4.79
734 755 7.923414 ATATCTCTCCTTACCACAAACAAAC 57.077 36.000 0.00 0.00 0.00 2.93
736 757 6.884295 CCAATATCTCTCCTTACCACAAACAA 59.116 38.462 0.00 0.00 0.00 2.83
799 832 1.217585 CGCACGTGCTGCTATGCTAT 61.218 55.000 35.27 0.00 44.64 2.97
800 833 1.878069 CGCACGTGCTGCTATGCTA 60.878 57.895 35.27 0.00 44.64 3.49
801 834 3.190849 CGCACGTGCTGCTATGCT 61.191 61.111 35.27 0.00 44.64 3.79
802 835 3.490759 ACGCACGTGCTGCTATGC 61.491 61.111 35.27 9.65 44.64 3.14
803 836 2.396861 CACGCACGTGCTGCTATG 59.603 61.111 35.27 22.01 44.64 2.23
948 1095 3.758755 ATGCTCACTTGAGTCACTTCA 57.241 42.857 8.04 0.00 43.85 3.02
949 1096 3.929610 GGTATGCTCACTTGAGTCACTTC 59.070 47.826 8.04 2.31 43.85 3.01
981 1133 5.762218 CGCCATCTTCTTCTTGGATTATTCT 59.238 40.000 0.00 0.00 31.94 2.40
985 1137 3.206150 GCGCCATCTTCTTCTTGGATTA 58.794 45.455 0.00 0.00 31.94 1.75
988 1140 0.740868 CGCGCCATCTTCTTCTTGGA 60.741 55.000 0.00 0.00 31.94 3.53
989 1141 1.717937 CGCGCCATCTTCTTCTTGG 59.282 57.895 0.00 0.00 0.00 3.61
990 1142 1.061570 GCGCGCCATCTTCTTCTTG 59.938 57.895 23.24 0.00 0.00 3.02
1041 1203 2.948840 GAACGTACTCCGCCGGGATG 62.949 65.000 1.90 0.00 42.83 3.51
1230 1392 1.889105 CATGACGCCCCATTCCTCG 60.889 63.158 0.00 0.00 0.00 4.63
1272 1434 2.473760 CGCGTCGATGAGGTCCTCT 61.474 63.158 19.82 5.55 0.00 3.69
1342 1504 3.751246 CGGGTCGTTGGCGTAGGA 61.751 66.667 0.00 0.00 39.49 2.94
1418 1580 1.081174 AGTCCTCCCATTCCCTCTTCA 59.919 52.381 0.00 0.00 0.00 3.02
1428 1590 1.080498 TGGAACAGGTAGTCCTCCCAT 59.920 52.381 0.00 0.00 43.07 4.00
1998 2166 1.080434 GTCGCCTTCAACGAGCTCT 60.080 57.895 12.85 0.00 40.80 4.09
2088 2256 3.433314 CCTCCTCCTCCTGTTGATCATTG 60.433 52.174 0.00 0.00 0.00 2.82
2136 2349 2.003830 TCCTCCTTCTCCTCCTCTTGA 58.996 52.381 0.00 0.00 0.00 3.02
2137 2350 2.541233 TCCTCCTTCTCCTCCTCTTG 57.459 55.000 0.00 0.00 0.00 3.02
2139 2352 1.342975 GCTTCCTCCTTCTCCTCCTCT 60.343 57.143 0.00 0.00 0.00 3.69
2142 2355 0.618968 TGGCTTCCTCCTTCTCCTCC 60.619 60.000 0.00 0.00 0.00 4.30
2143 2356 0.539518 GTGGCTTCCTCCTTCTCCTC 59.460 60.000 0.00 0.00 0.00 3.71
2144 2357 1.261238 CGTGGCTTCCTCCTTCTCCT 61.261 60.000 0.00 0.00 0.00 3.69
2145 2358 1.219393 CGTGGCTTCCTCCTTCTCC 59.781 63.158 0.00 0.00 0.00 3.71
2146 2359 0.608640 TTCGTGGCTTCCTCCTTCTC 59.391 55.000 0.00 0.00 0.00 2.87
2147 2360 0.610687 CTTCGTGGCTTCCTCCTTCT 59.389 55.000 0.00 0.00 0.00 2.85
2148 2361 1.021920 GCTTCGTGGCTTCCTCCTTC 61.022 60.000 0.00 0.00 0.00 3.46
2149 2362 1.003233 GCTTCGTGGCTTCCTCCTT 60.003 57.895 0.00 0.00 0.00 3.36
2150 2363 1.915769 AGCTTCGTGGCTTCCTCCT 60.916 57.895 0.00 0.00 39.86 3.69
2151 2364 1.743252 CAGCTTCGTGGCTTCCTCC 60.743 63.158 2.50 0.00 41.00 4.30
2152 2365 2.394563 GCAGCTTCGTGGCTTCCTC 61.395 63.158 2.50 0.00 41.00 3.71
2153 2366 2.359230 GCAGCTTCGTGGCTTCCT 60.359 61.111 2.50 0.00 41.00 3.36
2154 2367 3.435186 GGCAGCTTCGTGGCTTCC 61.435 66.667 5.58 5.58 41.00 3.46
2155 2368 3.793144 CGGCAGCTTCGTGGCTTC 61.793 66.667 0.00 0.00 41.00 3.86
2159 2372 4.680237 TGACCGGCAGCTTCGTGG 62.680 66.667 0.00 0.00 0.00 4.94
2160 2373 3.414700 GTGACCGGCAGCTTCGTG 61.415 66.667 0.00 0.88 0.00 4.35
2161 2374 4.681978 GGTGACCGGCAGCTTCGT 62.682 66.667 17.24 0.00 41.71 3.85
2172 2385 1.668101 CCTCCACTAGAGCGGTGACC 61.668 65.000 0.00 0.00 41.74 4.02
2173 2386 0.680280 TCCTCCACTAGAGCGGTGAC 60.680 60.000 0.00 0.00 41.74 3.67
2174 2387 0.394488 CTCCTCCACTAGAGCGGTGA 60.394 60.000 0.00 0.00 41.74 4.02
2175 2388 0.394488 TCTCCTCCACTAGAGCGGTG 60.394 60.000 0.00 0.00 41.74 4.94
2176 2389 0.331954 TTCTCCTCCACTAGAGCGGT 59.668 55.000 0.00 0.00 41.74 5.68
2177 2390 1.028905 CTTCTCCTCCACTAGAGCGG 58.971 60.000 0.00 0.00 41.74 5.52
2178 2391 1.028905 CCTTCTCCTCCACTAGAGCG 58.971 60.000 0.00 0.00 41.74 5.03
2179 2392 2.445682 TCCTTCTCCTCCACTAGAGC 57.554 55.000 0.00 0.00 41.74 4.09
2180 2393 4.207165 CTCTTCCTTCTCCTCCACTAGAG 58.793 52.174 0.00 0.00 42.83 2.43
2181 2394 3.053245 CCTCTTCCTTCTCCTCCACTAGA 60.053 52.174 0.00 0.00 0.00 2.43
2182 2395 3.295973 CCTCTTCCTTCTCCTCCACTAG 58.704 54.545 0.00 0.00 0.00 2.57
2183 2396 2.624557 GCCTCTTCCTTCTCCTCCACTA 60.625 54.545 0.00 0.00 0.00 2.74
2184 2397 1.899438 GCCTCTTCCTTCTCCTCCACT 60.899 57.143 0.00 0.00 0.00 4.00
2185 2398 0.539518 GCCTCTTCCTTCTCCTCCAC 59.460 60.000 0.00 0.00 0.00 4.02
2186 2399 0.618968 GGCCTCTTCCTTCTCCTCCA 60.619 60.000 0.00 0.00 0.00 3.86
2224 2437 2.049156 CTTGTGCTCGTCCTCGCA 60.049 61.111 0.00 0.00 36.96 5.10
2232 2445 0.249868 TCTTCACCACCTTGTGCTCG 60.250 55.000 0.00 0.00 36.17 5.03
2261 2474 1.429299 TGGTCTCCTCCTCTTCACTGA 59.571 52.381 0.00 0.00 0.00 3.41
2262 2475 1.930251 TGGTCTCCTCCTCTTCACTG 58.070 55.000 0.00 0.00 0.00 3.66
2263 2476 2.110899 TCTTGGTCTCCTCCTCTTCACT 59.889 50.000 0.00 0.00 0.00 3.41
2269 2482 0.467804 GCCATCTTGGTCTCCTCCTC 59.532 60.000 0.00 0.00 40.46 3.71
2433 2653 6.695429 TCATTACAAATGCCACAATAAAGCA 58.305 32.000 0.00 0.00 41.50 3.91
2458 2679 9.712359 AGTCTTTTTCGTCAACATTACTAAAAC 57.288 29.630 0.00 0.00 0.00 2.43
2516 2737 1.745232 TGTATCCGGATGGTTGTTGC 58.255 50.000 27.55 3.47 36.30 4.17
2549 2770 9.062524 CATCTATATATCTAGTCTAGGGTGTGC 57.937 40.741 7.05 0.00 0.00 4.57
2560 2781 7.422512 TGACCTTGGGCATCTATATATCTAGT 58.577 38.462 0.00 0.00 0.00 2.57
2577 2798 1.833630 TCTGGATGTAGCTGACCTTGG 59.166 52.381 0.00 0.00 0.00 3.61
2578 2799 3.834489 ATCTGGATGTAGCTGACCTTG 57.166 47.619 0.00 0.00 0.00 3.61
2582 2803 3.384789 TGTGGTATCTGGATGTAGCTGAC 59.615 47.826 0.00 0.00 0.00 3.51
2604 2825 5.527951 TGTTGCTTATCATTCGTTTTGCTT 58.472 33.333 0.00 0.00 0.00 3.91
2606 2827 5.820926 TTGTTGCTTATCATTCGTTTTGC 57.179 34.783 0.00 0.00 0.00 3.68
2607 2828 7.578736 GTGTTTTGTTGCTTATCATTCGTTTTG 59.421 33.333 0.00 0.00 0.00 2.44
2608 2829 7.254286 GGTGTTTTGTTGCTTATCATTCGTTTT 60.254 33.333 0.00 0.00 0.00 2.43
2630 2851 1.202722 CCCGTTTACCTGAAGTGGTGT 60.203 52.381 0.00 0.00 41.05 4.16
2639 2860 2.702847 GGCTATGCCCGTTTACCTG 58.297 57.895 0.00 0.00 44.06 4.00
2661 2883 1.735376 GAGGCCTCGGCTTGTCGATA 61.735 60.000 19.06 0.00 38.98 2.92
2668 2890 2.034221 GTTTGGAGGCCTCGGCTT 59.966 61.111 26.36 0.00 38.98 4.35
2685 2907 4.637771 CCTTCCTAAAGGCACCGG 57.362 61.111 0.00 0.00 45.50 5.28
2695 2917 1.674441 CGCTATGTCGTGACCTTCCTA 59.326 52.381 0.00 0.00 0.00 2.94
2864 3094 1.002430 GGGATTGGATCATGCGAGCTA 59.998 52.381 0.00 0.00 0.00 3.32
2881 3111 1.917336 GCCCCTACCATGTTTCGGGA 61.917 60.000 8.87 0.00 37.05 5.14
2907 3137 1.749665 CAGTCGGTGGTGGTGGTAA 59.250 57.895 0.00 0.00 0.00 2.85
3026 3260 4.388499 GGTCGTGGATGCCGTGGT 62.388 66.667 0.00 0.00 0.00 4.16
3029 3263 4.388499 GGTGGTCGTGGATGCCGT 62.388 66.667 0.00 0.00 0.00 5.68
3031 3265 4.796495 GGGGTGGTCGTGGATGCC 62.796 72.222 0.00 0.00 0.00 4.40
3045 3280 4.530857 GTGTCGAGGATGGCGGGG 62.531 72.222 0.00 0.00 0.00 5.73
3095 3333 2.624029 GCCATGGGAGGGAAAGAAATGA 60.624 50.000 15.13 0.00 0.00 2.57
3097 3335 1.362237 TGCCATGGGAGGGAAAGAAAT 59.638 47.619 15.13 0.00 0.00 2.17
3098 3336 0.783206 TGCCATGGGAGGGAAAGAAA 59.217 50.000 15.13 0.00 0.00 2.52
3100 3338 0.332632 CTTGCCATGGGAGGGAAAGA 59.667 55.000 15.13 0.00 42.81 2.52
3123 3361 3.668141 TCCTCTGCTCAGAAGATCTCT 57.332 47.619 0.00 0.00 36.94 3.10
3133 3371 0.972471 TCTCGCCATTCCTCTGCTCA 60.972 55.000 0.00 0.00 0.00 4.26
3171 3409 4.278513 TTGGTGGAGGGGGCAACG 62.279 66.667 0.00 0.00 37.60 4.10
3173 3411 3.909651 GGTTGGTGGAGGGGGCAA 61.910 66.667 0.00 0.00 0.00 4.52
3186 3424 4.344865 CCGTGGTCCCCTGGGTTG 62.345 72.222 12.71 0.00 36.47 3.77
3188 3426 3.918328 CTACCGTGGTCCCCTGGGT 62.918 68.421 12.71 0.00 34.96 4.51
3191 3429 2.058595 CCTCTACCGTGGTCCCCTG 61.059 68.421 0.00 0.00 0.00 4.45
3193 3431 2.762875 CCCTCTACCGTGGTCCCC 60.763 72.222 0.00 0.00 0.00 4.81
3241 3479 4.389576 GGACCTTGCAGCAACGCG 62.390 66.667 3.53 3.53 33.35 6.01
3266 3504 2.607771 CGACTGGTTCAAAGGCATTTGG 60.608 50.000 22.40 9.39 44.93 3.28
3268 3506 1.000274 GCGACTGGTTCAAAGGCATTT 60.000 47.619 0.00 0.00 0.00 2.32
3271 3509 1.896660 GGCGACTGGTTCAAAGGCA 60.897 57.895 0.00 0.00 0.00 4.75
3275 3513 2.975799 GGCGGCGACTGGTTCAAA 60.976 61.111 12.98 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.