Multiple sequence alignment - TraesCS6B01G005700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G005700 chr6B 100.000 4217 0 0 1 4217 4172992 4168776 0.000000e+00 7788.0
1 TraesCS6B01G005700 chr6B 88.246 1727 125 33 2435 4107 4153970 4152268 0.000000e+00 1993.0
2 TraesCS6B01G005700 chr6B 88.577 534 38 5 3598 4128 3876266 3876779 9.950000e-176 627.0
3 TraesCS6B01G005700 chr6B 86.190 601 49 18 2364 2960 3873821 3874391 1.670000e-173 619.0
4 TraesCS6B01G005700 chr6B 84.668 587 51 19 894 1460 4161981 4161414 2.220000e-152 549.0
5 TraesCS6B01G005700 chr6B 84.444 585 56 15 894 1460 3872803 3873370 1.030000e-150 544.0
6 TraesCS6B01G005700 chr6B 91.176 272 23 1 1189 1460 4154526 4154256 6.660000e-98 368.0
7 TraesCS6B01G005700 chr6B 87.279 283 26 6 2092 2370 4154248 4153972 8.800000e-82 315.0
8 TraesCS6B01G005700 chr6B 90.351 228 20 1 2674 2901 4160899 4160674 8.860000e-77 298.0
9 TraesCS6B01G005700 chr6B 80.423 378 35 19 2987 3334 3875888 3876256 7.000000e-63 252.0
10 TraesCS6B01G005700 chr6B 88.542 192 13 4 532 721 680723307 680723123 1.530000e-54 224.0
11 TraesCS6B01G005700 chr6B 97.959 98 1 1 4121 4217 3876953 3877050 7.250000e-38 169.0
12 TraesCS6B01G005700 chr6B 93.671 79 4 1 2916 2994 4160262 4160185 2.660000e-22 117.0
13 TraesCS6B01G005700 chr6B 89.552 67 6 1 1459 1524 538159984 538160050 2.700000e-12 84.2
14 TraesCS6B01G005700 chr6D 91.351 2405 137 28 1 2373 2168817 2171182 0.000000e+00 3223.0
15 TraesCS6B01G005700 chr6D 88.223 1851 146 41 2407 4217 2171160 2172978 0.000000e+00 2145.0
16 TraesCS6B01G005700 chr6D 86.027 959 87 24 2416 3338 2188095 2189042 0.000000e+00 985.0
17 TraesCS6B01G005700 chr6D 92.135 623 39 8 3600 4217 2189051 2189668 0.000000e+00 870.0
18 TraesCS6B01G005700 chr6D 94.805 385 20 0 1 385 4205153 4205537 6.030000e-168 601.0
19 TraesCS6B01G005700 chr6D 79.310 464 51 16 2434 2893 2277586 2277164 2.480000e-72 283.0
20 TraesCS6B01G005700 chr6D 88.496 226 26 0 1122 1347 2153672 2153897 1.490000e-69 274.0
21 TraesCS6B01G005700 chr6D 85.567 194 14 10 534 721 365448852 365448667 1.550000e-44 191.0
22 TraesCS6B01G005700 chr6A 89.444 540 46 4 933 1464 684899 684363 0.000000e+00 671.0
23 TraesCS6B01G005700 chr6A 83.633 501 56 10 3 495 733222 732740 8.320000e-122 448.0
24 TraesCS6B01G005700 chr6A 79.167 528 56 33 2374 2893 611647 612128 2.450000e-82 316.0
25 TraesCS6B01G005700 chr6A 80.000 465 51 23 2433 2892 642675 642248 5.300000e-79 305.0
26 TraesCS6B01G005700 chr6A 88.739 222 25 0 1253 1474 662672 662451 5.370000e-69 272.0
27 TraesCS6B01G005700 chr6A 81.466 232 38 4 2102 2330 1431019 1430790 7.200000e-43 185.0
28 TraesCS6B01G005700 chr2D 89.062 192 12 5 532 721 646440211 646440395 3.280000e-56 230.0
29 TraesCS6B01G005700 chr4B 87.047 193 14 7 532 721 34889147 34888963 1.540000e-49 207.0
30 TraesCS6B01G005700 chr7D 84.579 214 18 11 525 733 9395883 9396086 9.250000e-47 198.0
31 TraesCS6B01G005700 chr3A 84.694 196 15 10 532 721 108031998 108032184 9.310000e-42 182.0
32 TraesCS6B01G005700 chr1D 83.415 205 17 12 534 732 145508319 145508512 1.560000e-39 174.0
33 TraesCS6B01G005700 chr1D 81.991 211 24 12 519 723 236929072 236929274 2.610000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G005700 chr6B 4168776 4172992 4216 True 7788.000000 7788 100.000000 1 4217 1 chr6B.!!$R1 4216
1 TraesCS6B01G005700 chr6B 4152268 4154526 2258 True 892.000000 1993 88.900333 1189 4107 3 chr6B.!!$R3 2918
2 TraesCS6B01G005700 chr6B 3872803 3877050 4247 False 442.200000 627 87.518600 894 4217 5 chr6B.!!$F2 3323
3 TraesCS6B01G005700 chr6B 4160185 4161981 1796 True 321.333333 549 89.563333 894 2994 3 chr6B.!!$R4 2100
4 TraesCS6B01G005700 chr6D 2168817 2172978 4161 False 2684.000000 3223 89.787000 1 4217 2 chr6D.!!$F3 4216
5 TraesCS6B01G005700 chr6D 2188095 2189668 1573 False 927.500000 985 89.081000 2416 4217 2 chr6D.!!$F4 1801
6 TraesCS6B01G005700 chr6A 684363 684899 536 True 671.000000 671 89.444000 933 1464 1 chr6A.!!$R3 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
891 895 0.167470 CTCAATCACTTGTGCAGCCG 59.833 55.0 0.00 0.0 33.87 5.52 F
1869 1922 0.179111 TCCAGCAGCGGAAAGTATCG 60.179 55.0 3.77 0.0 29.93 2.92 F
2263 2322 0.107703 GAAGATCATCACCGGCCACA 60.108 55.0 0.00 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2062 2115 0.105453 AGCATCACTACCCGATCCCT 60.105 55.0 0.00 0.00 0.0 4.20 R
3041 5194 0.110486 ATTCCTTGAACCGCCACTGT 59.890 50.0 0.00 0.00 0.0 3.55 R
3791 5992 0.179056 CTACATTGACCCGGCGGAAT 60.179 55.0 30.79 16.85 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.676678 GATGGTGGCGAGTGGAGCTA 61.677 60.000 0.00 0.00 34.52 3.32
103 104 3.297134 TTCAACAAAGAAGGTGGAGCT 57.703 42.857 0.00 0.00 0.00 4.09
149 150 3.061295 CGACAACGATGACTCCATGAAAG 59.939 47.826 0.00 0.00 42.66 2.62
182 183 1.376553 GGTGCTCTCCAGAGGTTGC 60.377 63.158 5.74 2.14 42.29 4.17
183 184 1.372683 GTGCTCTCCAGAGGTTGCA 59.627 57.895 5.74 4.45 42.29 4.08
186 187 0.390998 GCTCTCCAGAGGTTGCACTC 60.391 60.000 5.74 0.00 42.29 3.51
208 209 1.033574 CTAGCTAGGTCGGTTGGAGG 58.966 60.000 13.32 0.00 0.00 4.30
244 245 4.024893 TCGAGTGAAGTTCATCAGCAAAAC 60.025 41.667 9.18 0.00 0.00 2.43
262 263 1.898574 CCCGAGCTGCCAAGTTGTT 60.899 57.895 1.45 0.00 0.00 2.83
370 371 3.251729 GTCAAAGTCAGCTTGCTTGATCA 59.748 43.478 0.00 0.00 34.71 2.92
436 437 8.560374 ACATAGTTTTCTTTTTCTTTCGAGGAG 58.440 33.333 0.00 0.00 0.00 3.69
445 446 7.603024 TCTTTTTCTTTCGAGGAGGATAACTTC 59.397 37.037 0.00 0.00 0.00 3.01
567 570 6.493166 AGGGTGGATTTTATTGACTCATGAA 58.507 36.000 0.00 0.00 0.00 2.57
568 571 7.128077 AGGGTGGATTTTATTGACTCATGAAT 58.872 34.615 0.00 0.00 0.00 2.57
569 572 7.286316 AGGGTGGATTTTATTGACTCATGAATC 59.714 37.037 0.00 0.00 0.00 2.52
570 573 7.068593 GGGTGGATTTTATTGACTCATGAATCA 59.931 37.037 2.00 2.00 0.00 2.57
571 574 8.636213 GGTGGATTTTATTGACTCATGAATCAT 58.364 33.333 7.82 1.48 0.00 2.45
572 575 9.459640 GTGGATTTTATTGACTCATGAATCATG 57.540 33.333 16.63 16.63 42.60 3.07
600 603 5.218885 CGCATCAAAGGATACAAAACACAA 58.781 37.500 0.00 0.00 41.41 3.33
601 604 5.863397 CGCATCAAAGGATACAAAACACAAT 59.137 36.000 0.00 0.00 41.41 2.71
602 605 6.183360 CGCATCAAAGGATACAAAACACAATG 60.183 38.462 0.00 0.00 41.41 2.82
616 619 1.600636 CAATGAGCACACACCCGGT 60.601 57.895 0.00 0.00 0.00 5.28
624 627 2.425592 CACACCCGGTCTCTGCAA 59.574 61.111 0.00 0.00 0.00 4.08
625 628 1.669115 CACACCCGGTCTCTGCAAG 60.669 63.158 0.00 0.00 0.00 4.01
626 629 2.140792 ACACCCGGTCTCTGCAAGT 61.141 57.895 0.00 0.00 33.76 3.16
628 631 0.320374 CACCCGGTCTCTGCAAGTTA 59.680 55.000 0.00 0.00 33.76 2.24
629 632 0.608640 ACCCGGTCTCTGCAAGTTAG 59.391 55.000 0.00 0.00 33.76 2.34
631 634 0.895530 CCGGTCTCTGCAAGTTAGGA 59.104 55.000 0.00 0.00 33.76 2.94
632 635 1.482593 CCGGTCTCTGCAAGTTAGGAT 59.517 52.381 0.00 0.00 33.76 3.24
634 637 2.093973 CGGTCTCTGCAAGTTAGGATGT 60.094 50.000 0.00 0.00 33.76 3.06
677 681 2.991190 ACATAAACACGCCGACAACTAG 59.009 45.455 0.00 0.00 0.00 2.57
678 682 1.421382 TAAACACGCCGACAACTAGC 58.579 50.000 0.00 0.00 0.00 3.42
680 684 0.531090 AACACGCCGACAACTAGCAA 60.531 50.000 0.00 0.00 0.00 3.91
699 703 9.050601 ACTAGCAAAGTCATATTAGATCAAAGC 57.949 33.333 0.00 0.00 30.33 3.51
710 714 5.531122 TTAGATCAAAGCTATGCGTAGGT 57.469 39.130 11.89 11.89 40.24 3.08
712 716 3.384789 AGATCAAAGCTATGCGTAGGTGA 59.615 43.478 17.98 12.16 38.59 4.02
717 721 2.108168 AGCTATGCGTAGGTGAGGAAA 58.892 47.619 16.65 0.00 37.28 3.13
758 762 6.612863 TGATTGAGTCATTGAGAGGAGGATAA 59.387 38.462 0.00 0.00 0.00 1.75
782 786 5.415701 ACATAGTTTTCATTCATCGCTTGGT 59.584 36.000 0.00 0.00 0.00 3.67
786 790 7.624360 AGTTTTCATTCATCGCTTGGTATTA 57.376 32.000 0.00 0.00 0.00 0.98
803 807 1.295020 TTACTTGGGCCCAGTAGCAT 58.705 50.000 26.87 8.20 0.00 3.79
816 820 4.999950 CCCAGTAGCATATGGAGTCATTTC 59.000 45.833 4.56 0.00 39.02 2.17
817 821 5.221803 CCCAGTAGCATATGGAGTCATTTCT 60.222 44.000 4.56 0.00 39.02 2.52
819 823 6.463472 CCAGTAGCATATGGAGTCATTTCTCA 60.463 42.308 4.56 0.00 39.02 3.27
821 825 7.660617 CAGTAGCATATGGAGTCATTTCTCATT 59.339 37.037 4.56 0.00 36.30 2.57
822 826 8.216423 AGTAGCATATGGAGTCATTTCTCATTT 58.784 33.333 4.56 0.00 36.30 2.32
823 827 7.273320 AGCATATGGAGTCATTTCTCATTTG 57.727 36.000 4.56 0.00 36.30 2.32
824 828 6.832384 AGCATATGGAGTCATTTCTCATTTGT 59.168 34.615 4.56 0.00 36.30 2.83
825 829 7.013083 AGCATATGGAGTCATTTCTCATTTGTC 59.987 37.037 4.56 0.00 36.30 3.18
826 830 7.646314 CATATGGAGTCATTTCTCATTTGTCC 58.354 38.462 0.00 0.00 36.30 4.02
827 831 5.246981 TGGAGTCATTTCTCATTTGTCCT 57.753 39.130 0.00 0.00 36.30 3.85
828 832 5.248640 TGGAGTCATTTCTCATTTGTCCTC 58.751 41.667 0.00 0.00 36.30 3.71
884 888 4.011966 TCTGCATGTCTCAATCACTTGT 57.988 40.909 0.00 0.00 33.87 3.16
887 891 2.227149 GCATGTCTCAATCACTTGTGCA 59.773 45.455 0.00 0.00 32.52 4.57
888 892 3.669824 GCATGTCTCAATCACTTGTGCAG 60.670 47.826 0.00 0.00 32.52 4.41
889 893 1.875514 TGTCTCAATCACTTGTGCAGC 59.124 47.619 0.00 0.00 33.87 5.25
891 895 0.167470 CTCAATCACTTGTGCAGCCG 59.833 55.000 0.00 0.00 33.87 5.52
892 896 0.250252 TCAATCACTTGTGCAGCCGA 60.250 50.000 0.00 0.00 33.87 5.54
1009 1047 2.978298 CTATCCCACTCCTCGCCGGA 62.978 65.000 5.05 0.00 40.30 5.14
1073 1111 2.837291 CCTCCTCCTCCTCGCCAG 60.837 72.222 0.00 0.00 0.00 4.85
1093 1131 2.044469 GCCCCATCTTCATCCTCCTCT 61.044 57.143 0.00 0.00 0.00 3.69
1125 1163 2.607750 GCCTCTGTCTCCCACCCA 60.608 66.667 0.00 0.00 0.00 4.51
1157 1195 0.250727 CCCAAGGTGGTCAACGACAT 60.251 55.000 0.00 0.00 35.17 3.06
1201 1239 3.068881 CCGCCAACTTCTCCTCCA 58.931 61.111 0.00 0.00 0.00 3.86
1204 1242 0.539051 CGCCAACTTCTCCTCCATCT 59.461 55.000 0.00 0.00 0.00 2.90
1413 1451 0.818296 CCGTCCTCTTCTTCGTGGAT 59.182 55.000 0.00 0.00 0.00 3.41
1480 1518 1.892474 AGCATCTCTAGCCGATCCTTC 59.108 52.381 0.00 0.00 0.00 3.46
1498 1536 8.604890 CGATCCTTCAAAAATAGAGGAGTAAAC 58.395 37.037 0.00 0.00 0.00 2.01
1499 1537 8.809468 ATCCTTCAAAAATAGAGGAGTAAACC 57.191 34.615 0.00 0.00 0.00 3.27
1500 1538 7.751646 TCCTTCAAAAATAGAGGAGTAAACCA 58.248 34.615 0.00 0.00 0.00 3.67
1501 1539 7.664318 TCCTTCAAAAATAGAGGAGTAAACCAC 59.336 37.037 0.00 0.00 0.00 4.16
1502 1540 7.665974 CCTTCAAAAATAGAGGAGTAAACCACT 59.334 37.037 0.00 0.00 41.47 4.00
1503 1541 7.979444 TCAAAAATAGAGGAGTAAACCACTG 57.021 36.000 0.00 0.00 37.72 3.66
1504 1542 7.741785 TCAAAAATAGAGGAGTAAACCACTGA 58.258 34.615 0.00 0.00 37.72 3.41
1505 1543 7.878127 TCAAAAATAGAGGAGTAAACCACTGAG 59.122 37.037 0.00 0.00 37.72 3.35
1506 1544 6.936968 AAATAGAGGAGTAAACCACTGAGT 57.063 37.500 0.00 0.00 37.72 3.41
1507 1545 8.431910 AAAATAGAGGAGTAAACCACTGAGTA 57.568 34.615 0.00 0.00 37.72 2.59
1508 1546 8.431910 AAATAGAGGAGTAAACCACTGAGTAA 57.568 34.615 0.00 0.00 37.72 2.24
1509 1547 8.431910 AATAGAGGAGTAAACCACTGAGTAAA 57.568 34.615 0.00 0.00 37.72 2.01
1535 1573 3.930848 AGTGGAGTAAAATAAAGGACGCG 59.069 43.478 3.53 3.53 0.00 6.01
1539 1577 4.427312 GAGTAAAATAAAGGACGCGAGGA 58.573 43.478 15.93 0.00 0.00 3.71
1576 1614 0.880278 TCTTCTTATGCATCGCCGCC 60.880 55.000 0.19 0.00 0.00 6.13
1629 1667 1.474077 CTTCCTAGCATGTTTGGCACC 59.526 52.381 5.17 0.00 0.00 5.01
1642 1687 2.184579 GCACCGCCAGGAGTAGAC 59.815 66.667 0.00 0.00 41.02 2.59
1649 1694 0.971447 GCCAGGAGTAGACGAAGGGT 60.971 60.000 0.00 0.00 0.00 4.34
1694 1739 2.672996 CCACCCCGCTGACTTTGG 60.673 66.667 0.00 0.00 0.00 3.28
1695 1740 2.113139 CACCCCGCTGACTTTGGT 59.887 61.111 0.00 0.00 0.00 3.67
1704 1749 1.813513 CTGACTTTGGTACCAGCAGG 58.186 55.000 21.49 10.29 42.21 4.85
1729 1774 2.570181 GGTGTGGTAGACCGGACG 59.430 66.667 9.46 0.00 39.43 4.79
1818 1871 2.568090 CATTCTGGCCGTGGCAAC 59.432 61.111 13.76 0.00 44.11 4.17
1832 1885 3.124921 CAACGGTCATGGGCGGTC 61.125 66.667 0.00 0.00 0.00 4.79
1849 1902 4.343323 CATGGTGGCGTGTGGGGA 62.343 66.667 0.00 0.00 0.00 4.81
1869 1922 0.179111 TCCAGCAGCGGAAAGTATCG 60.179 55.000 3.77 0.00 29.93 2.92
1902 1955 2.044352 GAAACGGGTGGGATGGGG 60.044 66.667 0.00 0.00 0.00 4.96
1922 1975 1.431845 GATTTTACTTGGCCGGGCG 59.568 57.895 24.45 12.68 0.00 6.13
1947 2000 4.382362 GGGATAAGTATATTTAGGCGCCGT 60.382 45.833 23.20 12.38 0.00 5.68
1951 2004 1.001181 GTATATTTAGGCGCCGTGGGA 59.999 52.381 23.20 8.46 0.00 4.37
1963 2016 0.955905 CCGTGGGACAAAATTTCGGT 59.044 50.000 4.53 0.44 44.16 4.69
1967 2020 2.030274 GTGGGACAAAATTTCGGTGGAG 60.030 50.000 0.00 0.00 44.16 3.86
1971 2024 4.461431 GGGACAAAATTTCGGTGGAGTAAT 59.539 41.667 0.00 0.00 0.00 1.89
2012 2065 2.226962 TTAGGACTTCGGCTAGGTGT 57.773 50.000 0.00 0.00 0.00 4.16
2013 2066 1.471119 TAGGACTTCGGCTAGGTGTG 58.529 55.000 0.00 0.00 0.00 3.82
2117 2170 7.922382 AGGAGAGAAAATACTTCTTCATTCCA 58.078 34.615 0.00 0.00 32.76 3.53
2263 2322 0.107703 GAAGATCATCACCGGCCACA 60.108 55.000 0.00 0.00 0.00 4.17
2314 2376 2.700897 CTCTCGGTATGTTCCAATCCCT 59.299 50.000 0.00 0.00 0.00 4.20
2331 2393 4.884668 TCCCTGTAAAGTCTACCAACAG 57.115 45.455 0.00 0.00 37.81 3.16
2346 2408 3.181480 ACCAACAGCAACCATGTGTTAAC 60.181 43.478 0.00 0.00 34.69 2.01
2347 2409 3.380142 CAACAGCAACCATGTGTTAACC 58.620 45.455 2.48 0.00 34.69 2.85
2348 2410 2.660572 ACAGCAACCATGTGTTAACCA 58.339 42.857 2.48 1.15 34.69 3.67
2350 2412 3.449018 ACAGCAACCATGTGTTAACCAAA 59.551 39.130 2.48 0.00 34.69 3.28
2353 2415 4.161377 AGCAACCATGTGTTAACCAAAACT 59.839 37.500 2.48 0.00 34.69 2.66
2354 2416 4.269844 GCAACCATGTGTTAACCAAAACTG 59.730 41.667 2.48 0.00 34.69 3.16
2355 2417 5.655488 CAACCATGTGTTAACCAAAACTGA 58.345 37.500 2.48 0.00 34.69 3.41
2356 2418 6.279882 CAACCATGTGTTAACCAAAACTGAT 58.720 36.000 2.48 0.00 34.69 2.90
2357 2419 6.478512 ACCATGTGTTAACCAAAACTGATT 57.521 33.333 2.48 0.00 0.00 2.57
2359 2421 7.430441 ACCATGTGTTAACCAAAACTGATTAC 58.570 34.615 2.48 0.00 0.00 1.89
2360 2422 7.286775 ACCATGTGTTAACCAAAACTGATTACT 59.713 33.333 2.48 0.00 0.00 2.24
2361 2423 7.807907 CCATGTGTTAACCAAAACTGATTACTC 59.192 37.037 2.48 0.00 0.00 2.59
2362 2424 8.567948 CATGTGTTAACCAAAACTGATTACTCT 58.432 33.333 2.48 0.00 0.00 3.24
2473 2733 2.257676 GCTTGCTGCTGCCTCAAC 59.742 61.111 13.47 0.00 38.71 3.18
2485 2745 1.277842 TGCCTCAACGCTGGAAGATAA 59.722 47.619 0.00 0.00 34.07 1.75
2505 2765 1.987855 AGCAGCTTGTACCGGGCTA 60.988 57.895 6.32 0.00 34.71 3.93
2562 2822 1.068417 CTGTTCCACGTTGACCCGA 59.932 57.895 0.00 0.00 0.00 5.14
2648 2912 8.950208 ATGGTATCTTCTCTAACTTGCTTTAC 57.050 34.615 0.00 0.00 0.00 2.01
2657 2921 5.373222 TCTAACTTGCTTTACCTTTCAGCA 58.627 37.500 0.00 0.00 41.85 4.41
2658 2922 4.574599 AACTTGCTTTACCTTTCAGCAG 57.425 40.909 0.00 0.00 44.21 4.24
2661 2925 2.305928 TGCTTTACCTTTCAGCAGCAA 58.694 42.857 0.00 0.00 38.65 3.91
2774 3046 1.140589 CAGAGCGTCTCCGATTGCT 59.859 57.895 3.66 0.00 41.11 3.91
2802 3074 0.965439 TTCGGCCAACAAAATCCCAG 59.035 50.000 2.24 0.00 0.00 4.45
2877 3149 2.568623 TCAAGAAGGAAGCAAGTCCC 57.431 50.000 0.00 0.00 38.59 4.46
2893 3175 1.077068 CCCGTTGTATGCCATGGGT 60.077 57.895 15.13 0.00 35.40 4.51
2943 3623 5.154222 GGAATTGACGAATTGAGTTGAACC 58.846 41.667 0.00 0.00 31.58 3.62
3013 5165 1.398390 CGGCAATGAAGTTGGTAGAGC 59.602 52.381 0.00 0.00 38.29 4.09
3041 5194 1.003118 GGTACTCCATTGAGGTGCACA 59.997 52.381 20.43 0.00 43.29 4.57
3045 5198 0.473755 TCCATTGAGGTGCACACAGT 59.526 50.000 20.43 11.88 39.02 3.55
3080 5233 2.047844 CACACTGGGGCGAGTCAG 60.048 66.667 0.00 0.00 37.07 3.51
3092 5245 4.142004 GGGGCGAGTCAGAAAATAGAACTA 60.142 45.833 0.00 0.00 0.00 2.24
3093 5246 5.416947 GGGCGAGTCAGAAAATAGAACTAA 58.583 41.667 0.00 0.00 0.00 2.24
3100 5253 6.369065 AGTCAGAAAATAGAACTAAGCAACCG 59.631 38.462 0.00 0.00 0.00 4.44
3103 5256 2.327200 ATAGAACTAAGCAACCGGCC 57.673 50.000 0.00 0.00 46.50 6.13
3105 5258 0.328258 AGAACTAAGCAACCGGCCAT 59.672 50.000 0.00 0.00 46.50 4.40
3205 5383 8.964420 AGACCGAACATACAACAAATAAATTG 57.036 30.769 0.00 0.00 44.95 2.32
3267 5445 7.856145 TGAAAACCACAAATAAAATTGCTGT 57.144 28.000 0.00 0.00 33.52 4.40
3279 5457 4.650545 AAATTGCTGTTAATTGCTTGCG 57.349 36.364 0.00 0.00 31.05 4.85
3285 5463 1.136085 TGTTAATTGCTTGCGCTCGAC 60.136 47.619 9.73 0.00 36.97 4.20
3294 5472 4.849329 GCGCTCGACACGTAGGGG 62.849 72.222 0.00 0.00 0.00 4.79
3303 5481 2.037144 GACACGTAGGGGTCCATACAT 58.963 52.381 6.55 0.00 31.30 2.29
3354 5532 6.036408 GGTATATGTCGGTGTACTTTGAAACC 59.964 42.308 0.00 0.00 0.00 3.27
3362 5540 2.074576 GTACTTTGAAACCGAGCCCTC 58.925 52.381 0.00 0.00 0.00 4.30
3394 5572 5.356190 CACAAATACTCTGACTCAATGGCAT 59.644 40.000 0.00 0.00 30.31 4.40
3401 5579 1.307097 GACTCAATGGCATGGCTCTC 58.693 55.000 21.08 2.24 0.00 3.20
3430 5608 1.629353 TCAATAGGGCGGTTAACACCA 59.371 47.619 16.26 0.57 44.53 4.17
3445 5623 0.883833 CACCATGGAAGCAACCTCAC 59.116 55.000 21.47 0.00 0.00 3.51
3464 5642 3.898123 TCACTTGAGCAGTTTCTCCTAGT 59.102 43.478 0.00 0.00 30.92 2.57
3465 5643 4.345257 TCACTTGAGCAGTTTCTCCTAGTT 59.655 41.667 0.00 0.00 30.92 2.24
3467 5645 4.101741 ACTTGAGCAGTTTCTCCTAGTTGT 59.898 41.667 0.00 0.00 27.32 3.32
3469 5647 3.246619 GAGCAGTTTCTCCTAGTTGTCG 58.753 50.000 0.00 0.00 0.00 4.35
3514 5692 1.917303 GTTGGGTGCAAATAAATCGCG 59.083 47.619 0.00 0.00 0.00 5.87
3532 5710 1.945819 GCGTCCAATTCTCTTCTGGCA 60.946 52.381 0.00 0.00 0.00 4.92
3541 5719 7.012327 TCCAATTCTCTTCTGGCATAAAATACG 59.988 37.037 0.00 0.00 0.00 3.06
3544 5722 3.211045 TCTTCTGGCATAAAATACGGGC 58.789 45.455 0.00 0.00 0.00 6.13
3556 5734 0.102844 ATACGGGCAATGCAATGTGC 59.897 50.000 7.79 10.94 45.29 4.57
3582 5765 7.465916 CATGTACATGTAACTGAATACCAGTGC 60.466 40.741 24.91 0.00 42.99 4.40
3620 5820 9.754382 ATTATCGGAATACAGTTACAACGTAAT 57.246 29.630 0.00 0.00 0.00 1.89
3664 5865 5.108385 AGCACGGTTTTCATGAGTAAAAG 57.892 39.130 0.00 0.00 0.00 2.27
3727 5928 6.815089 TCAGTGCCAAAAACATGAATACTTT 58.185 32.000 0.00 0.00 0.00 2.66
3731 5932 9.206870 AGTGCCAAAAACATGAATACTTTTATG 57.793 29.630 0.00 0.00 35.52 1.90
3749 5950 9.581099 ACTTTTATGTTTCAACATTCGTCTTTT 57.419 25.926 10.38 0.00 46.95 2.27
3788 5989 5.178096 TCTTCAAGAGATTGGGTGCAATA 57.822 39.130 0.00 0.00 0.00 1.90
3789 5990 5.759059 TCTTCAAGAGATTGGGTGCAATAT 58.241 37.500 0.00 0.00 0.00 1.28
3790 5991 6.899089 TCTTCAAGAGATTGGGTGCAATATA 58.101 36.000 0.00 0.00 0.00 0.86
3791 5992 7.345691 TCTTCAAGAGATTGGGTGCAATATAA 58.654 34.615 0.00 0.00 0.00 0.98
3792 5993 8.000709 TCTTCAAGAGATTGGGTGCAATATAAT 58.999 33.333 0.00 0.00 0.00 1.28
3879 6083 7.253883 GCAACTTATTCAATGCTTGATGCTTAC 60.254 37.037 10.20 0.00 43.37 2.34
3891 6097 7.923888 TGCTTGATGCTTACTAGATGATTTTC 58.076 34.615 0.00 0.00 43.37 2.29
3925 6131 3.118775 TCATGTTGGATGAACCCGTCTAG 60.119 47.826 0.00 0.00 38.00 2.43
3926 6132 1.066430 TGTTGGATGAACCCGTCTAGC 60.066 52.381 0.00 0.00 38.00 3.42
3932 6138 2.973694 TGAACCCGTCTAGCCAATAC 57.026 50.000 0.00 0.00 0.00 1.89
3944 6150 2.632377 AGCCAATACGACAATGACTGG 58.368 47.619 0.00 0.00 0.00 4.00
3947 6153 3.680475 GCCAATACGACAATGACTGGGTA 60.680 47.826 0.00 0.00 0.00 3.69
4039 6246 2.684001 AAGGCAATCACAATGCATGG 57.316 45.000 0.00 0.00 45.60 3.66
4083 6292 7.548967 TCACGTCATCCTTGTACATGTATAAA 58.451 34.615 14.92 9.42 0.00 1.40
4209 6601 8.432013 AGGAAAACAGCCTTTTTGATTATTCTT 58.568 29.630 0.00 0.00 29.44 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 150 1.782028 GCACCGTCCACTGAAACCAC 61.782 60.000 0.00 0.00 0.00 4.16
203 204 1.541147 CGAGAAAATTGCAAGCCTCCA 59.459 47.619 4.94 0.00 0.00 3.86
208 209 3.542712 TCACTCGAGAAAATTGCAAGC 57.457 42.857 21.68 0.00 0.00 4.01
244 245 1.898574 AACAACTTGGCAGCTCGGG 60.899 57.895 0.00 0.00 0.00 5.14
262 263 0.816018 ACAATCGGCCACAAACGTCA 60.816 50.000 2.24 0.00 0.00 4.35
343 344 1.002033 GCAAGCTGACTTTGACTGTGG 60.002 52.381 0.00 0.00 32.29 4.17
345 346 2.338577 AGCAAGCTGACTTTGACTGT 57.661 45.000 0.00 0.00 32.29 3.55
370 371 6.208204 CCTCTCAATCAACAAAAATCACCTCT 59.792 38.462 0.00 0.00 0.00 3.69
409 410 8.899771 TCCTCGAAAGAAAAAGAAAACTATGTT 58.100 29.630 0.00 0.00 41.32 2.71
533 535 6.658188 ATAAAATCCACCCTTTGTCGAAAA 57.342 33.333 0.00 0.00 0.00 2.29
537 539 5.183140 AGTCAATAAAATCCACCCTTTGTCG 59.817 40.000 0.00 0.00 0.00 4.35
572 575 5.484173 TTTGTATCCTTTGATGCGTCATC 57.516 39.130 9.96 11.42 40.88 2.92
575 578 4.851558 GTGTTTTGTATCCTTTGATGCGTC 59.148 41.667 0.00 0.00 36.48 5.19
577 580 4.793071 TGTGTTTTGTATCCTTTGATGCG 58.207 39.130 0.00 0.00 36.48 4.73
579 582 7.062605 GCTCATTGTGTTTTGTATCCTTTGATG 59.937 37.037 0.00 0.00 32.18 3.07
580 583 7.092716 GCTCATTGTGTTTTGTATCCTTTGAT 58.907 34.615 0.00 0.00 34.87 2.57
581 584 6.040278 TGCTCATTGTGTTTTGTATCCTTTGA 59.960 34.615 0.00 0.00 0.00 2.69
582 585 6.144402 GTGCTCATTGTGTTTTGTATCCTTTG 59.856 38.462 0.00 0.00 0.00 2.77
583 586 6.183360 TGTGCTCATTGTGTTTTGTATCCTTT 60.183 34.615 0.00 0.00 0.00 3.11
584 587 5.301551 TGTGCTCATTGTGTTTTGTATCCTT 59.698 36.000 0.00 0.00 0.00 3.36
591 594 2.859538 GGTGTGTGCTCATTGTGTTTTG 59.140 45.455 0.00 0.00 0.00 2.44
600 603 2.172483 GAGACCGGGTGTGTGCTCAT 62.172 60.000 3.30 0.00 0.00 2.90
601 604 2.842462 AGACCGGGTGTGTGCTCA 60.842 61.111 3.30 0.00 0.00 4.26
602 605 2.048127 GAGACCGGGTGTGTGCTC 60.048 66.667 3.30 0.00 0.00 4.26
616 619 4.526650 TGTGTACATCCTAACTTGCAGAGA 59.473 41.667 0.00 0.00 0.00 3.10
624 627 4.844349 ATTGGCTGTGTACATCCTAACT 57.156 40.909 0.00 0.00 33.51 2.24
625 628 6.288294 TGATATTGGCTGTGTACATCCTAAC 58.712 40.000 0.00 0.00 33.51 2.34
626 629 6.493189 TGATATTGGCTGTGTACATCCTAA 57.507 37.500 0.00 0.00 33.51 2.69
628 631 5.104360 AGTTGATATTGGCTGTGTACATCCT 60.104 40.000 0.00 0.00 33.51 3.24
629 632 5.126067 AGTTGATATTGGCTGTGTACATCC 58.874 41.667 0.00 1.72 32.98 3.51
631 634 5.586243 GTGAGTTGATATTGGCTGTGTACAT 59.414 40.000 0.00 0.00 0.00 2.29
632 635 4.935205 GTGAGTTGATATTGGCTGTGTACA 59.065 41.667 0.00 0.00 0.00 2.90
634 637 4.935205 GTGTGAGTTGATATTGGCTGTGTA 59.065 41.667 0.00 0.00 0.00 2.90
645 649 4.390603 GGCGTGTTTATGTGTGAGTTGATA 59.609 41.667 0.00 0.00 0.00 2.15
649 653 1.529438 CGGCGTGTTTATGTGTGAGTT 59.471 47.619 0.00 0.00 0.00 3.01
677 681 9.823098 CATAGCTTTGATCTAATATGACTTTGC 57.177 33.333 0.00 0.00 0.00 3.68
678 682 9.823098 GCATAGCTTTGATCTAATATGACTTTG 57.177 33.333 8.49 3.96 0.00 2.77
680 684 7.875041 ACGCATAGCTTTGATCTAATATGACTT 59.125 33.333 8.49 0.12 0.00 3.01
726 730 6.349115 CCTCTCAATGACTCAATCAACTTTGG 60.349 42.308 0.00 0.00 41.93 3.28
735 739 6.385176 TGTTATCCTCCTCTCAATGACTCAAT 59.615 38.462 0.00 0.00 0.00 2.57
758 762 5.415701 ACCAAGCGATGAATGAAAACTATGT 59.584 36.000 0.00 0.00 0.00 2.29
782 786 2.483547 TGCTACTGGGCCCAAGTAATA 58.516 47.619 28.29 16.70 0.00 0.98
786 790 1.143684 CATATGCTACTGGGCCCAAGT 59.856 52.381 28.29 25.93 0.00 3.16
803 807 6.962182 AGGACAAATGAGAAATGACTCCATA 58.038 36.000 0.00 0.00 36.22 2.74
816 820 0.716108 GACGCGTGAGGACAAATGAG 59.284 55.000 20.70 0.00 0.00 2.90
817 821 0.669318 GGACGCGTGAGGACAAATGA 60.669 55.000 20.70 0.00 0.00 2.57
819 823 1.736645 CGGACGCGTGAGGACAAAT 60.737 57.895 20.70 0.00 0.00 2.32
851 855 5.016051 AGACATGCAGAACTCGATTGTAT 57.984 39.130 0.00 0.00 0.00 2.29
1073 1111 0.399833 GAGGAGGATGAAGATGGGGC 59.600 60.000 0.00 0.00 0.00 5.80
1078 1116 2.688477 GTGGGAGAGGAGGATGAAGAT 58.312 52.381 0.00 0.00 0.00 2.40
1125 1163 2.305095 CTTGGGCAGGATGAGGTCT 58.695 57.895 0.00 0.00 39.69 3.85
1371 1409 2.124612 TATCCCTCGACGCCGTGA 60.125 61.111 0.00 0.00 37.05 4.35
1424 1462 0.754587 GCCGTAGTAGGGGTAGTGCT 60.755 60.000 10.81 0.00 0.00 4.40
1480 1518 7.661847 ACTCAGTGGTTTACTCCTCTATTTTTG 59.338 37.037 0.00 0.00 37.60 2.44
1499 1537 8.882415 TTTTACTCCACTAACTTTACTCAGTG 57.118 34.615 0.00 0.00 38.48 3.66
1507 1545 8.996271 CGTCCTTTATTTTACTCCACTAACTTT 58.004 33.333 0.00 0.00 0.00 2.66
1508 1546 7.118825 GCGTCCTTTATTTTACTCCACTAACTT 59.881 37.037 0.00 0.00 0.00 2.66
1509 1547 6.592994 GCGTCCTTTATTTTACTCCACTAACT 59.407 38.462 0.00 0.00 0.00 2.24
1550 1588 5.160641 GGCGATGCATAAGAAGAAACAAAA 58.839 37.500 0.00 0.00 0.00 2.44
1554 1592 2.851008 GCGGCGATGCATAAGAAGAAAC 60.851 50.000 12.98 0.00 34.15 2.78
1629 1667 1.433879 CCTTCGTCTACTCCTGGCG 59.566 63.158 0.00 0.00 0.00 5.69
1642 1687 2.487532 ATCGGTCGGCTACCCTTCG 61.488 63.158 2.16 0.00 46.62 3.79
1649 1694 2.441348 TCCAGCATCGGTCGGCTA 60.441 61.111 0.00 0.00 38.56 3.93
1660 1705 4.648626 GCCACTGCCTGTCCAGCA 62.649 66.667 0.00 0.00 36.29 4.41
1685 1730 1.611673 CCCTGCTGGTACCAAAGTCAG 60.612 57.143 17.11 18.14 0.00 3.51
1690 1735 2.424842 CTGCCCCTGCTGGTACCAAA 62.425 60.000 17.11 6.41 38.71 3.28
1694 1739 4.803908 GGCTGCCCCTGCTGGTAC 62.804 72.222 7.66 0.62 38.71 3.34
1704 1749 4.778143 CTACCACACCGGCTGCCC 62.778 72.222 14.12 0.00 39.03 5.36
1720 1765 1.856629 TAGAAAATCCCGTCCGGTCT 58.143 50.000 0.00 3.27 0.00 3.85
1729 1774 4.455877 CACCGATTAGGCATAGAAAATCCC 59.544 45.833 0.00 0.00 46.52 3.85
1773 1826 3.246880 ACCCTTCCACGACCCCAC 61.247 66.667 0.00 0.00 0.00 4.61
1818 1871 2.896854 CATGACCGCCCATGACCG 60.897 66.667 8.92 0.00 44.98 4.79
1832 1885 3.643595 ATCCCCACACGCCACCATG 62.644 63.158 0.00 0.00 0.00 3.66
1849 1902 1.539065 CGATACTTTCCGCTGCTGGAT 60.539 52.381 12.63 3.17 38.00 3.41
1880 1933 0.328258 CATCCCACCCGTTTCTTCCT 59.672 55.000 0.00 0.00 0.00 3.36
1902 1955 1.672854 GCCCGGCCAAGTAAAATCCC 61.673 60.000 2.24 0.00 0.00 3.85
1922 1975 4.449131 GCGCCTAAATATACTTATCCCCC 58.551 47.826 0.00 0.00 0.00 5.40
1947 2000 2.235016 CTCCACCGAAATTTTGTCCCA 58.765 47.619 4.72 0.00 0.00 4.37
1981 2034 5.246145 CGAAGTCCTAAATCGGTTAGAGT 57.754 43.478 7.99 0.00 41.70 3.24
2007 2060 6.896883 AGTTTTACTCTTCTAAACCACACCT 58.103 36.000 0.00 0.00 33.38 4.00
2044 2097 9.646427 CCGATCCCTTAAAATTCTATAGAGAAG 57.354 37.037 5.94 3.69 44.90 2.85
2045 2098 8.594550 CCCGATCCCTTAAAATTCTATAGAGAA 58.405 37.037 1.60 1.60 45.75 2.87
2055 2108 5.703730 TCACTACCCGATCCCTTAAAATT 57.296 39.130 0.00 0.00 0.00 1.82
2062 2115 0.105453 AGCATCACTACCCGATCCCT 60.105 55.000 0.00 0.00 0.00 4.20
2314 2376 4.131596 GGTTGCTGTTGGTAGACTTTACA 58.868 43.478 0.00 0.00 0.00 2.41
2331 2393 4.269844 CAGTTTTGGTTAACACATGGTTGC 59.730 41.667 8.10 0.00 40.73 4.17
2384 2642 9.430623 TCAATGATTTAAACTCGATTGACTGTA 57.569 29.630 0.00 0.00 0.00 2.74
2385 2643 8.322906 TCAATGATTTAAACTCGATTGACTGT 57.677 30.769 0.00 0.00 0.00 3.55
2386 2644 9.778993 AATCAATGATTTAAACTCGATTGACTG 57.221 29.630 2.07 0.00 33.79 3.51
2429 2689 7.841222 TCATCACTGTGAGCACCCTATATATAT 59.159 37.037 16.46 0.00 0.00 0.86
2485 2745 2.347490 CCCGGTACAAGCTGCTGT 59.653 61.111 1.35 6.45 0.00 4.40
2505 2765 5.334421 ACTGGTAGTCTGGTAGAAGTTGAT 58.666 41.667 0.00 0.00 0.00 2.57
2562 2822 2.203480 TGAGGGGCGCTTTGCTTT 60.203 55.556 7.64 0.00 45.43 3.51
2648 2912 0.829182 AAGGGGTTGCTGCTGAAAGG 60.829 55.000 0.00 0.00 0.00 3.11
2661 2925 3.716353 AGAAATGGAAAAAGCAAAGGGGT 59.284 39.130 0.00 0.00 0.00 4.95
2674 2942 6.414732 CCCAACTCAGTACATAGAAATGGAA 58.585 40.000 14.27 0.00 37.43 3.53
2675 2943 5.104527 CCCCAACTCAGTACATAGAAATGGA 60.105 44.000 14.27 0.00 37.43 3.41
2774 3046 1.464734 TGTTGGCCGAAACAAACTCA 58.535 45.000 6.19 0.00 37.12 3.41
2802 3074 3.623060 GTGTGATGGTGGTATGTGATCAC 59.377 47.826 19.27 19.27 42.11 3.06
2877 3149 1.679139 ATGACCCATGGCATACAACG 58.321 50.000 6.09 0.00 0.00 4.10
2928 3608 3.435327 TCCATTCGGTTCAACTCAATTCG 59.565 43.478 0.00 0.00 0.00 3.34
2943 3623 7.424803 TCCATATAAACAAGCATTTCCATTCG 58.575 34.615 0.00 0.00 0.00 3.34
3013 5165 2.700897 CTCAATGGAGTACCCTACCCTG 59.299 54.545 0.00 0.00 36.36 4.45
3041 5194 0.110486 ATTCCTTGAACCGCCACTGT 59.890 50.000 0.00 0.00 0.00 3.55
3045 5198 0.825425 TGCAATTCCTTGAACCGCCA 60.825 50.000 0.00 0.00 34.04 5.69
3080 5233 4.438336 GGCCGGTTGCTTAGTTCTATTTTC 60.438 45.833 1.90 0.00 40.92 2.29
3092 5245 2.285024 AATGCATGGCCGGTTGCTT 61.285 52.632 21.33 14.58 39.60 3.91
3093 5246 2.681064 AATGCATGGCCGGTTGCT 60.681 55.556 21.33 8.35 39.60 3.91
3100 5253 3.118665 AGGTTCATTTACAATGCATGGCC 60.119 43.478 0.00 0.00 0.00 5.36
3103 5256 4.985413 ACGAGGTTCATTTACAATGCATG 58.015 39.130 0.00 0.00 0.00 4.06
3105 5258 6.561737 TTAACGAGGTTCATTTACAATGCA 57.438 33.333 0.00 0.00 0.00 3.96
3150 5326 9.762381 AGGGAAATATTTTACAACCTAATCACA 57.238 29.630 1.43 0.00 0.00 3.58
3172 5350 5.657745 TGTTGTATGTTCGGTCTATTAGGGA 59.342 40.000 0.00 0.00 0.00 4.20
3240 5418 8.180267 CAGCAATTTTATTTGTGGTTTTCAACA 58.820 29.630 0.00 0.00 0.00 3.33
3241 5419 8.180920 ACAGCAATTTTATTTGTGGTTTTCAAC 58.819 29.630 0.00 0.00 0.00 3.18
3279 5457 2.488820 GACCCCTACGTGTCGAGC 59.511 66.667 0.00 0.00 0.00 5.03
3285 5463 2.036387 TCATGTATGGACCCCTACGTG 58.964 52.381 13.96 13.96 36.58 4.49
3294 5472 6.207810 AGCTAGCTAGTACTTCATGTATGGAC 59.792 42.308 17.69 0.00 33.23 4.02
3303 5481 5.823570 CACTTAGGAGCTAGCTAGTACTTCA 59.176 44.000 19.38 3.93 0.00 3.02
3362 5540 3.000674 GTCAGAGTATTTGTGCGTGATCG 60.001 47.826 0.00 0.00 40.37 3.69
3368 5546 4.201753 CCATTGAGTCAGAGTATTTGTGCG 60.202 45.833 0.00 0.00 0.00 5.34
3394 5572 0.986527 TTGATTCTGCCAGAGAGCCA 59.013 50.000 0.00 0.00 30.18 4.75
3401 5579 1.233019 CGCCCTATTGATTCTGCCAG 58.767 55.000 0.00 0.00 0.00 4.85
3430 5608 2.787994 CTCAAGTGAGGTTGCTTCCAT 58.212 47.619 0.00 0.00 38.48 3.41
3445 5623 4.636249 ACAACTAGGAGAAACTGCTCAAG 58.364 43.478 0.00 0.00 36.62 3.02
3514 5692 6.515272 TTTTATGCCAGAAGAGAATTGGAC 57.485 37.500 0.00 0.00 33.76 4.02
3532 5710 5.049167 CACATTGCATTGCCCGTATTTTAT 58.951 37.500 6.12 0.00 0.00 1.40
3582 5765 9.144747 CTGTATTCCGATAATGATCTACTTTGG 57.855 37.037 0.00 0.00 0.00 3.28
3589 5772 9.477484 GTTGTAACTGTATTCCGATAATGATCT 57.523 33.333 0.00 0.00 0.00 2.75
3590 5773 8.425491 CGTTGTAACTGTATTCCGATAATGATC 58.575 37.037 0.00 0.00 0.00 2.92
3620 5820 3.361786 TGTATCCCTCGTCATCAACTCA 58.638 45.455 0.00 0.00 0.00 3.41
3664 5865 7.893302 TGGTCATAAAATCATAATATCCCCCAC 59.107 37.037 0.00 0.00 0.00 4.61
3788 5989 1.133915 ACATTGACCCGGCGGAATTAT 60.134 47.619 30.79 12.51 0.00 1.28
3789 5990 0.253610 ACATTGACCCGGCGGAATTA 59.746 50.000 30.79 9.22 0.00 1.40
3790 5991 0.253610 TACATTGACCCGGCGGAATT 59.746 50.000 30.79 11.43 0.00 2.17
3791 5992 0.179056 CTACATTGACCCGGCGGAAT 60.179 55.000 30.79 16.85 0.00 3.01
3792 5993 1.219664 CTACATTGACCCGGCGGAA 59.780 57.895 30.79 15.01 0.00 4.30
3891 6097 6.985117 TCATCCAACATGAAAGAAAAGGAAG 58.015 36.000 0.00 0.00 0.00 3.46
3925 6131 1.670811 CCCAGTCATTGTCGTATTGGC 59.329 52.381 0.00 0.00 0.00 4.52
3926 6132 2.985896 ACCCAGTCATTGTCGTATTGG 58.014 47.619 0.00 0.00 0.00 3.16
3932 6138 1.337728 TGCACTACCCAGTCATTGTCG 60.338 52.381 0.00 0.00 30.46 4.35
3944 6150 3.344515 CCCTTTCTTAGGTTGCACTACC 58.655 50.000 0.00 0.00 43.07 3.18
3947 6153 1.780919 ACCCCTTTCTTAGGTTGCACT 59.219 47.619 0.00 0.00 43.07 4.40
4083 6292 0.670546 CGGTGCCTTGTCGACTGAAT 60.671 55.000 17.92 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.