Multiple sequence alignment - TraesCS6B01G004700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G004700 chr6B 100.000 4675 0 0 1 4675 3595360 3600034 0.000000e+00 8597
1 TraesCS6B01G004700 chr6B 96.226 371 13 1 4296 4666 176261139 176261508 1.440000e-169 606
2 TraesCS6B01G004700 chr6B 95.699 372 15 1 4304 4675 102402323 102401953 8.660000e-167 597
3 TraesCS6B01G004700 chr4A 97.144 4201 110 4 1 4200 627837837 627842028 0.000000e+00 7084
4 TraesCS6B01G004700 chr4A 96.211 4276 154 5 1 4273 358773010 358777280 0.000000e+00 6992
5 TraesCS6B01G004700 chr4A 93.268 4293 277 12 1 4285 61129309 61133597 0.000000e+00 6316
6 TraesCS6B01G004700 chr4A 96.226 371 13 1 4296 4666 638956362 638956731 1.440000e-169 606
7 TraesCS6B01G004700 chr3B 96.236 4277 150 8 1 4273 49605413 49609682 0.000000e+00 6996
8 TraesCS6B01G004700 chr2A 96.839 4144 128 3 1 4143 245748043 245752184 0.000000e+00 6924
9 TraesCS6B01G004700 chr7B 95.199 4291 196 9 1 4285 709404243 709408529 0.000000e+00 6774
10 TraesCS6B01G004700 chr7B 96.742 4051 121 8 1 4046 440585213 440581169 0.000000e+00 6739
11 TraesCS6B01G004700 chr7B 95.187 374 17 1 4302 4675 185333345 185333717 1.450000e-164 590
12 TraesCS6B01G004700 chr5B 95.585 4213 178 8 1 4208 63750972 63755181 0.000000e+00 6743
13 TraesCS6B01G004700 chr1B 93.226 4296 272 17 1 4284 533978883 533974595 0.000000e+00 6303
14 TraesCS6B01G004700 chr1B 95.699 372 15 1 4304 4675 166603150 166603520 8.660000e-167 597
15 TraesCS6B01G004700 chr1B 94.751 381 19 1 4296 4675 309365534 309365914 4.030000e-165 592
16 TraesCS6B01G004700 chr1B 95.161 372 17 1 4296 4666 309365609 309365980 1.870000e-163 586
17 TraesCS6B01G004700 chr7A 95.699 372 15 1 4304 4675 447240502 447240872 8.660000e-167 597
18 TraesCS6B01G004700 chr4B 95.430 372 16 1 4304 4675 582600117 582599747 4.030000e-165 592
19 TraesCS6B01G004700 chr5A 95.161 372 16 2 4296 4666 479483492 479483122 1.870000e-163 586


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G004700 chr6B 3595360 3600034 4674 False 8597 8597 100.000 1 4675 1 chr6B.!!$F1 4674
1 TraesCS6B01G004700 chr4A 627837837 627842028 4191 False 7084 7084 97.144 1 4200 1 chr4A.!!$F3 4199
2 TraesCS6B01G004700 chr4A 358773010 358777280 4270 False 6992 6992 96.211 1 4273 1 chr4A.!!$F2 4272
3 TraesCS6B01G004700 chr4A 61129309 61133597 4288 False 6316 6316 93.268 1 4285 1 chr4A.!!$F1 4284
4 TraesCS6B01G004700 chr3B 49605413 49609682 4269 False 6996 6996 96.236 1 4273 1 chr3B.!!$F1 4272
5 TraesCS6B01G004700 chr2A 245748043 245752184 4141 False 6924 6924 96.839 1 4143 1 chr2A.!!$F1 4142
6 TraesCS6B01G004700 chr7B 709404243 709408529 4286 False 6774 6774 95.199 1 4285 1 chr7B.!!$F2 4284
7 TraesCS6B01G004700 chr7B 440581169 440585213 4044 True 6739 6739 96.742 1 4046 1 chr7B.!!$R1 4045
8 TraesCS6B01G004700 chr5B 63750972 63755181 4209 False 6743 6743 95.585 1 4208 1 chr5B.!!$F1 4207
9 TraesCS6B01G004700 chr1B 533974595 533978883 4288 True 6303 6303 93.226 1 4284 1 chr1B.!!$R1 4283

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
383 384 0.250234 CGAGCCCAGGTGATGAGAAA 59.750 55.000 0.00 0.0 0.00 2.52 F
904 905 0.321671 GTACACTTGCTCTGCCCTCA 59.678 55.000 0.00 0.0 0.00 3.86 F
947 948 0.323999 TCTGCTAACCCTGCCGACTA 60.324 55.000 0.00 0.0 0.00 2.59 F
2444 2447 3.856521 CACAGTCTTAGAGAATGCGTCTG 59.143 47.826 5.41 0.0 43.48 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1724 1726 0.464554 GCATCCTGAGGCACCTTACC 60.465 60.000 0.00 0.00 38.12 2.85 R
2136 2138 1.893786 CCAGCAGTCGACCTTAGCT 59.106 57.895 13.01 13.78 35.63 3.32 R
3225 3231 0.469144 GGGTCAAGGTTTGGCTCCAA 60.469 55.000 0.00 0.00 35.12 3.53 R
4530 4694 0.033991 TCTCACTCGGAGGCTTAGCT 60.034 55.000 10.23 0.00 44.19 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 2.351276 GACATGGCCAACGAGGGT 59.649 61.111 10.96 0.79 38.09 4.34
116 117 3.646715 CCGGGGAAGGAGTGGCAA 61.647 66.667 0.00 0.00 0.00 4.52
119 120 2.359975 GGGAAGGAGTGGCAACCG 60.360 66.667 0.00 0.00 0.00 4.44
147 148 0.839946 AGAGGGTGAGTGTGTGCTTT 59.160 50.000 0.00 0.00 0.00 3.51
182 183 2.570284 CCGTGGGTTTTCCTTGCCC 61.570 63.158 0.00 0.00 42.64 5.36
383 384 0.250234 CGAGCCCAGGTGATGAGAAA 59.750 55.000 0.00 0.00 0.00 2.52
904 905 0.321671 GTACACTTGCTCTGCCCTCA 59.678 55.000 0.00 0.00 0.00 3.86
947 948 0.323999 TCTGCTAACCCTGCCGACTA 60.324 55.000 0.00 0.00 0.00 2.59
964 965 4.281525 GACTAGTCGACTGATCCTTGTC 57.718 50.000 28.12 17.48 0.00 3.18
2314 2317 5.767168 GCCTTAGGCTTTATGATGTCAATCT 59.233 40.000 17.16 0.00 46.69 2.40
2444 2447 3.856521 CACAGTCTTAGAGAATGCGTCTG 59.143 47.826 5.41 0.00 43.48 3.51
3225 3231 0.984230 TGAAGAGGAAACCAGCCGAT 59.016 50.000 0.00 0.00 0.00 4.18
3926 3937 0.892063 GAGAGGGTCGCTCTTCACTT 59.108 55.000 19.51 0.00 0.00 3.16
4015 4102 8.541312 GCTCTTCACTCGGTAAGATTTTTATAC 58.459 37.037 0.00 0.00 31.60 1.47
4067 4155 0.179000 CGAGTGGAAGGCTGGCTTAT 59.821 55.000 17.01 3.46 0.00 1.73
4115 4278 2.434884 GCACGAGGCTGCAGCTAA 60.435 61.111 35.82 0.00 41.70 3.09
4116 4279 2.459442 GCACGAGGCTGCAGCTAAG 61.459 63.158 35.82 27.02 41.70 2.18
4117 4280 2.125350 ACGAGGCTGCAGCTAAGC 60.125 61.111 35.82 20.55 41.70 3.09
4123 4286 3.785859 CTGCAGCTAAGCCCCCGA 61.786 66.667 0.00 0.00 0.00 5.14
4124 4287 3.746949 CTGCAGCTAAGCCCCCGAG 62.747 68.421 0.00 0.00 0.00 4.63
4125 4288 3.787001 GCAGCTAAGCCCCCGAGT 61.787 66.667 0.00 0.00 0.00 4.18
4126 4289 2.187946 CAGCTAAGCCCCCGAGTG 59.812 66.667 0.00 0.00 0.00 3.51
4127 4290 2.038975 AGCTAAGCCCCCGAGTGA 59.961 61.111 0.00 0.00 0.00 3.41
4128 4291 2.060980 AGCTAAGCCCCCGAGTGAG 61.061 63.158 0.00 0.00 0.00 3.51
4129 4292 2.058595 GCTAAGCCCCCGAGTGAGA 61.059 63.158 0.00 0.00 0.00 3.27
4130 4293 2.022240 GCTAAGCCCCCGAGTGAGAG 62.022 65.000 0.00 0.00 0.00 3.20
4131 4294 1.381327 TAAGCCCCCGAGTGAGAGG 60.381 63.158 0.00 0.00 0.00 3.69
4132 4295 1.870941 TAAGCCCCCGAGTGAGAGGA 61.871 60.000 0.00 0.00 0.00 3.71
4133 4296 2.444895 GCCCCCGAGTGAGAGGAT 60.445 66.667 0.00 0.00 0.00 3.24
4134 4297 2.066999 GCCCCCGAGTGAGAGGATT 61.067 63.158 0.00 0.00 0.00 3.01
4135 4298 1.826024 CCCCCGAGTGAGAGGATTG 59.174 63.158 0.00 0.00 0.00 2.67
4136 4299 1.144936 CCCCGAGTGAGAGGATTGC 59.855 63.158 0.00 0.00 0.00 3.56
4137 4300 1.333636 CCCCGAGTGAGAGGATTGCT 61.334 60.000 0.00 0.00 0.00 3.91
4138 4301 0.103937 CCCGAGTGAGAGGATTGCTC 59.896 60.000 0.00 0.00 0.00 4.26
4139 4302 1.110442 CCGAGTGAGAGGATTGCTCT 58.890 55.000 7.50 7.50 33.57 4.09
4140 4303 1.480137 CCGAGTGAGAGGATTGCTCTT 59.520 52.381 9.24 0.00 33.57 2.85
4141 4304 2.481104 CCGAGTGAGAGGATTGCTCTTC 60.481 54.545 9.24 6.25 33.57 2.87
4142 4305 2.165234 CGAGTGAGAGGATTGCTCTTCA 59.835 50.000 9.24 6.26 33.57 3.02
4143 4306 3.520569 GAGTGAGAGGATTGCTCTTCAC 58.479 50.000 19.99 19.99 33.44 3.18
4144 4307 3.172339 AGTGAGAGGATTGCTCTTCACT 58.828 45.455 22.41 22.41 36.02 3.41
4145 4308 3.195396 AGTGAGAGGATTGCTCTTCACTC 59.805 47.826 22.41 8.59 36.02 3.51
4146 4309 2.165234 TGAGAGGATTGCTCTTCACTCG 59.835 50.000 9.24 0.00 33.57 4.18
4147 4310 1.480137 AGAGGATTGCTCTTCACTCGG 59.520 52.381 1.25 0.00 30.11 4.63
4148 4311 1.205893 GAGGATTGCTCTTCACTCGGT 59.794 52.381 0.00 0.00 0.00 4.69
4149 4312 2.427453 GAGGATTGCTCTTCACTCGGTA 59.573 50.000 0.00 0.00 0.00 4.02
4150 4313 2.428890 AGGATTGCTCTTCACTCGGTAG 59.571 50.000 0.00 0.00 0.00 3.18
4151 4314 2.482142 GGATTGCTCTTCACTCGGTAGG 60.482 54.545 0.00 0.00 0.00 3.18
4152 4315 1.919240 TTGCTCTTCACTCGGTAGGA 58.081 50.000 0.00 0.00 0.00 2.94
4153 4316 2.145397 TGCTCTTCACTCGGTAGGAT 57.855 50.000 0.00 0.00 0.00 3.24
4154 4317 2.457598 TGCTCTTCACTCGGTAGGATT 58.542 47.619 0.00 0.00 0.00 3.01
4155 4318 2.832129 TGCTCTTCACTCGGTAGGATTT 59.168 45.455 0.00 0.00 0.00 2.17
4156 4319 3.260884 TGCTCTTCACTCGGTAGGATTTT 59.739 43.478 0.00 0.00 0.00 1.82
4157 4320 3.619038 GCTCTTCACTCGGTAGGATTTTG 59.381 47.826 0.00 0.00 0.00 2.44
4158 4321 4.620803 GCTCTTCACTCGGTAGGATTTTGA 60.621 45.833 0.00 0.00 0.00 2.69
4159 4322 5.665459 CTCTTCACTCGGTAGGATTTTGAT 58.335 41.667 0.00 0.00 0.00 2.57
4160 4323 6.683110 GCTCTTCACTCGGTAGGATTTTGATA 60.683 42.308 0.00 0.00 0.00 2.15
4161 4324 7.177832 TCTTCACTCGGTAGGATTTTGATAA 57.822 36.000 0.00 0.00 0.00 1.75
4162 4325 7.039882 TCTTCACTCGGTAGGATTTTGATAAC 58.960 38.462 0.00 0.00 0.00 1.89
4163 4326 6.540438 TCACTCGGTAGGATTTTGATAACT 57.460 37.500 0.00 0.00 0.00 2.24
4164 4327 6.942976 TCACTCGGTAGGATTTTGATAACTT 58.057 36.000 0.00 0.00 0.00 2.66
4165 4328 8.070034 TCACTCGGTAGGATTTTGATAACTTA 57.930 34.615 0.00 0.00 0.00 2.24
4166 4329 8.195436 TCACTCGGTAGGATTTTGATAACTTAG 58.805 37.037 0.00 0.00 0.00 2.18
4167 4330 7.438459 CACTCGGTAGGATTTTGATAACTTAGG 59.562 40.741 0.00 0.00 0.00 2.69
4168 4331 6.285990 TCGGTAGGATTTTGATAACTTAGGC 58.714 40.000 0.00 0.00 0.00 3.93
4169 4332 5.176958 CGGTAGGATTTTGATAACTTAGGCG 59.823 44.000 0.00 0.00 0.00 5.52
4170 4333 6.285990 GGTAGGATTTTGATAACTTAGGCGA 58.714 40.000 0.00 0.00 0.00 5.54
4171 4334 6.424207 GGTAGGATTTTGATAACTTAGGCGAG 59.576 42.308 0.00 0.00 0.00 5.03
4172 4335 4.816925 AGGATTTTGATAACTTAGGCGAGC 59.183 41.667 0.00 0.00 0.00 5.03
4173 4336 4.574828 GGATTTTGATAACTTAGGCGAGCA 59.425 41.667 0.00 0.00 0.00 4.26
4174 4337 4.939509 TTTTGATAACTTAGGCGAGCAC 57.060 40.909 0.00 0.00 0.00 4.40
4175 4338 2.203800 TGATAACTTAGGCGAGCACG 57.796 50.000 0.00 0.00 42.93 5.34
4176 4339 1.746787 TGATAACTTAGGCGAGCACGA 59.253 47.619 8.01 0.00 42.66 4.35
4177 4340 2.223502 TGATAACTTAGGCGAGCACGAG 60.224 50.000 8.01 0.00 42.66 4.18
4178 4341 0.454600 TAACTTAGGCGAGCACGAGG 59.545 55.000 8.01 0.00 42.66 4.63
4179 4342 1.533469 AACTTAGGCGAGCACGAGGT 61.533 55.000 8.01 0.00 42.66 3.85
4180 4343 1.226717 CTTAGGCGAGCACGAGGTC 60.227 63.158 8.01 1.65 42.66 3.85
4187 4350 3.062466 AGCACGAGGTCGCAGCTA 61.062 61.111 15.66 0.00 46.86 3.32
4244 4408 7.439056 CGGTAGGATTTTTATAACTTAGGCGAA 59.561 37.037 0.00 0.00 0.00 4.70
4268 4432 2.894387 GCTGCAGCTAAGCCTCCG 60.894 66.667 31.33 0.00 38.21 4.63
4269 4433 2.895680 CTGCAGCTAAGCCTCCGA 59.104 61.111 0.00 0.00 0.00 4.55
4270 4434 1.227205 CTGCAGCTAAGCCTCCGAG 60.227 63.158 0.00 0.00 0.00 4.63
4271 4435 1.954362 CTGCAGCTAAGCCTCCGAGT 61.954 60.000 0.00 0.00 0.00 4.18
4272 4436 1.520342 GCAGCTAAGCCTCCGAGTG 60.520 63.158 0.00 0.00 0.00 3.51
4273 4437 1.142748 CAGCTAAGCCTCCGAGTGG 59.857 63.158 0.00 0.00 0.00 4.00
4274 4438 1.000486 AGCTAAGCCTCCGAGTGGA 60.000 57.895 0.00 0.00 43.88 4.02
4275 4439 0.614979 AGCTAAGCCTCCGAGTGGAA 60.615 55.000 0.00 0.00 45.87 3.53
4276 4440 0.179097 GCTAAGCCTCCGAGTGGAAG 60.179 60.000 0.00 0.00 45.87 3.46
4277 4441 0.461961 CTAAGCCTCCGAGTGGAAGG 59.538 60.000 0.00 0.00 45.87 3.46
4279 4443 3.394836 GCCTCCGAGTGGAAGGCT 61.395 66.667 13.91 0.00 46.55 4.58
4280 4444 2.581354 CCTCCGAGTGGAAGGCTG 59.419 66.667 0.00 0.00 45.87 4.85
4281 4445 2.581354 CTCCGAGTGGAAGGCTGG 59.419 66.667 0.00 0.00 45.87 4.85
4282 4446 3.672295 CTCCGAGTGGAAGGCTGGC 62.672 68.421 0.00 0.00 45.87 4.85
4283 4447 3.710722 CCGAGTGGAAGGCTGGCT 61.711 66.667 0.00 0.00 37.49 4.75
4284 4448 2.348998 CGAGTGGAAGGCTGGCTT 59.651 61.111 17.01 17.01 0.00 4.35
4313 4477 2.475666 CTTGGACTGCAGCTAAGCC 58.524 57.895 15.27 8.35 0.00 4.35
4314 4478 1.002134 TTGGACTGCAGCTAAGCCC 60.002 57.895 15.27 6.29 0.00 5.19
4315 4479 2.124529 GGACTGCAGCTAAGCCCC 60.125 66.667 15.27 0.00 0.00 5.80
4316 4480 2.124529 GACTGCAGCTAAGCCCCC 60.125 66.667 15.27 0.00 0.00 5.40
4317 4481 4.101448 ACTGCAGCTAAGCCCCCG 62.101 66.667 15.27 0.00 0.00 5.73
4318 4482 3.785859 CTGCAGCTAAGCCCCCGA 61.786 66.667 0.00 0.00 0.00 5.14
4319 4483 3.746949 CTGCAGCTAAGCCCCCGAG 62.747 68.421 0.00 0.00 0.00 4.63
4320 4484 3.787001 GCAGCTAAGCCCCCGAGT 61.787 66.667 0.00 0.00 0.00 4.18
4321 4485 2.187946 CAGCTAAGCCCCCGAGTG 59.812 66.667 0.00 0.00 0.00 3.51
4322 4486 3.083997 AGCTAAGCCCCCGAGTGG 61.084 66.667 0.00 0.00 0.00 4.00
4323 4487 3.081409 GCTAAGCCCCCGAGTGGA 61.081 66.667 0.00 0.00 37.49 4.02
4324 4488 2.666098 GCTAAGCCCCCGAGTGGAA 61.666 63.158 0.00 0.00 37.49 3.53
4325 4489 1.522569 CTAAGCCCCCGAGTGGAAG 59.477 63.158 0.00 0.00 37.49 3.46
4326 4490 1.972660 CTAAGCCCCCGAGTGGAAGG 61.973 65.000 0.00 0.00 37.49 3.46
4329 4493 4.101448 CCCCCGAGTGGAAGGCTG 62.101 72.222 0.00 0.00 37.49 4.85
4330 4494 4.101448 CCCCGAGTGGAAGGCTGG 62.101 72.222 0.00 0.00 37.49 4.85
4331 4495 4.785453 CCCGAGTGGAAGGCTGGC 62.785 72.222 0.00 0.00 37.49 4.85
4332 4496 3.710722 CCGAGTGGAAGGCTGGCT 61.711 66.667 0.00 0.00 37.49 4.75
4333 4497 2.348998 CGAGTGGAAGGCTGGCTT 59.651 61.111 17.01 17.01 0.00 4.35
4334 4498 1.596934 CGAGTGGAAGGCTGGCTTA 59.403 57.895 17.01 0.00 0.00 3.09
4335 4499 0.741221 CGAGTGGAAGGCTGGCTTAC 60.741 60.000 18.59 18.59 0.00 2.34
4336 4500 0.393132 GAGTGGAAGGCTGGCTTACC 60.393 60.000 21.93 20.07 0.00 2.85
4337 4501 1.133809 AGTGGAAGGCTGGCTTACCA 61.134 55.000 21.93 22.01 46.51 3.25
4338 4502 0.960861 GTGGAAGGCTGGCTTACCAC 60.961 60.000 30.16 30.16 42.67 4.16
4339 4503 1.133809 TGGAAGGCTGGCTTACCACT 61.134 55.000 21.93 0.00 42.67 4.00
4340 4504 0.393132 GGAAGGCTGGCTTACCACTC 60.393 60.000 17.01 3.10 42.67 3.51
4341 4505 0.741221 GAAGGCTGGCTTACCACTCG 60.741 60.000 17.01 0.00 42.67 4.18
4342 4506 2.125106 GGCTGGCTTACCACTCGG 60.125 66.667 0.00 0.00 42.67 4.63
4344 4508 1.610554 GGCTGGCTTACCACTCGGTA 61.611 60.000 0.00 0.00 46.71 4.02
4356 4520 5.687166 ACCACTCGGTAGGATTTTGATAA 57.313 39.130 0.00 0.00 46.71 1.75
4357 4521 6.057321 ACCACTCGGTAGGATTTTGATAAA 57.943 37.500 0.00 0.00 46.71 1.40
4358 4522 5.878669 ACCACTCGGTAGGATTTTGATAAAC 59.121 40.000 0.00 0.00 46.71 2.01
4359 4523 6.113411 CCACTCGGTAGGATTTTGATAAACT 58.887 40.000 0.00 0.00 0.00 2.66
4360 4524 6.598064 CCACTCGGTAGGATTTTGATAAACTT 59.402 38.462 0.00 0.00 0.00 2.66
4361 4525 7.767198 CCACTCGGTAGGATTTTGATAAACTTA 59.233 37.037 0.00 0.00 0.00 2.24
4362 4526 8.818057 CACTCGGTAGGATTTTGATAAACTTAG 58.182 37.037 0.00 0.00 0.00 2.18
4363 4527 7.985752 ACTCGGTAGGATTTTGATAAACTTAGG 59.014 37.037 0.00 0.00 0.00 2.69
4364 4528 6.764560 TCGGTAGGATTTTGATAAACTTAGGC 59.235 38.462 0.00 0.00 0.00 3.93
4365 4529 6.292703 CGGTAGGATTTTGATAAACTTAGGCG 60.293 42.308 0.00 0.00 0.00 5.52
4366 4530 6.764560 GGTAGGATTTTGATAAACTTAGGCGA 59.235 38.462 0.00 0.00 0.00 5.54
4367 4531 6.927294 AGGATTTTGATAAACTTAGGCGAG 57.073 37.500 0.00 0.00 0.00 5.03
4368 4532 6.415573 AGGATTTTGATAAACTTAGGCGAGT 58.584 36.000 0.00 0.00 0.00 4.18
4369 4533 6.316390 AGGATTTTGATAAACTTAGGCGAGTG 59.684 38.462 0.00 0.00 0.00 3.51
4370 4534 4.939509 TTTGATAAACTTAGGCGAGTGC 57.060 40.909 0.00 0.00 41.71 4.40
4371 4535 3.887621 TGATAAACTTAGGCGAGTGCT 57.112 42.857 0.00 0.00 42.25 4.40
4372 4536 4.202245 TGATAAACTTAGGCGAGTGCTT 57.798 40.909 0.00 0.00 42.25 3.91
4373 4537 3.932710 TGATAAACTTAGGCGAGTGCTTG 59.067 43.478 0.00 0.00 42.25 4.01
4374 4538 1.523758 AAACTTAGGCGAGTGCTTGG 58.476 50.000 0.00 0.00 42.25 3.61
4375 4539 0.685097 AACTTAGGCGAGTGCTTGGA 59.315 50.000 0.00 0.00 42.25 3.53
4376 4540 0.037232 ACTTAGGCGAGTGCTTGGAC 60.037 55.000 0.00 0.00 42.25 4.02
4377 4541 0.247736 CTTAGGCGAGTGCTTGGACT 59.752 55.000 0.00 0.00 42.25 3.85
4378 4542 0.037326 TTAGGCGAGTGCTTGGACTG 60.037 55.000 0.00 0.00 42.25 3.51
4379 4543 2.507110 TAGGCGAGTGCTTGGACTGC 62.507 60.000 0.00 4.22 42.25 4.40
4380 4544 2.666190 GCGAGTGCTTGGACTGCA 60.666 61.111 0.00 0.00 38.39 4.41
4381 4545 2.675056 GCGAGTGCTTGGACTGCAG 61.675 63.158 13.48 13.48 41.41 4.41
4382 4546 2.675056 CGAGTGCTTGGACTGCAGC 61.675 63.158 15.27 6.61 41.41 5.25
4383 4547 1.302351 GAGTGCTTGGACTGCAGCT 60.302 57.895 15.27 0.23 41.41 4.24
4384 4548 0.036952 GAGTGCTTGGACTGCAGCTA 60.037 55.000 15.27 1.42 41.41 3.32
4385 4549 0.397941 AGTGCTTGGACTGCAGCTAA 59.602 50.000 15.27 9.98 41.41 3.09
4386 4550 0.801251 GTGCTTGGACTGCAGCTAAG 59.199 55.000 21.43 21.43 41.41 2.18
4387 4551 0.957395 TGCTTGGACTGCAGCTAAGC 60.957 55.000 32.25 32.25 42.92 3.09
4388 4552 1.652167 GCTTGGACTGCAGCTAAGCC 61.652 60.000 30.56 19.28 38.17 4.35
4389 4553 1.002134 TTGGACTGCAGCTAAGCCC 60.002 57.895 15.27 6.29 0.00 5.19
4390 4554 2.124529 GGACTGCAGCTAAGCCCC 60.125 66.667 15.27 0.00 0.00 5.80
4391 4555 2.124529 GACTGCAGCTAAGCCCCC 60.125 66.667 15.27 0.00 0.00 5.40
4392 4556 4.101448 ACTGCAGCTAAGCCCCCG 62.101 66.667 15.27 0.00 0.00 5.73
4393 4557 3.785859 CTGCAGCTAAGCCCCCGA 61.786 66.667 0.00 0.00 0.00 5.14
4394 4558 3.746949 CTGCAGCTAAGCCCCCGAG 62.747 68.421 0.00 0.00 0.00 4.63
4395 4559 3.787001 GCAGCTAAGCCCCCGAGT 61.787 66.667 0.00 0.00 0.00 4.18
4396 4560 2.187946 CAGCTAAGCCCCCGAGTG 59.812 66.667 0.00 0.00 0.00 3.51
4397 4561 3.083997 AGCTAAGCCCCCGAGTGG 61.084 66.667 0.00 0.00 0.00 4.00
4398 4562 3.081409 GCTAAGCCCCCGAGTGGA 61.081 66.667 0.00 0.00 37.49 4.02
4399 4563 2.666098 GCTAAGCCCCCGAGTGGAA 61.666 63.158 0.00 0.00 37.49 3.53
4400 4564 1.522569 CTAAGCCCCCGAGTGGAAG 59.477 63.158 0.00 0.00 37.49 3.46
4401 4565 1.972660 CTAAGCCCCCGAGTGGAAGG 61.973 65.000 0.00 0.00 37.49 3.46
4404 4568 4.101448 CCCCCGAGTGGAAGGCTG 62.101 72.222 0.00 0.00 37.49 4.85
4405 4569 4.101448 CCCCGAGTGGAAGGCTGG 62.101 72.222 0.00 0.00 37.49 4.85
4406 4570 4.785453 CCCGAGTGGAAGGCTGGC 62.785 72.222 0.00 0.00 37.49 4.85
4407 4571 3.710722 CCGAGTGGAAGGCTGGCT 61.711 66.667 0.00 0.00 37.49 4.75
4408 4572 2.348998 CGAGTGGAAGGCTGGCTT 59.651 61.111 17.01 17.01 0.00 4.35
4409 4573 1.596934 CGAGTGGAAGGCTGGCTTA 59.403 57.895 17.01 0.00 0.00 3.09
4410 4574 0.741221 CGAGTGGAAGGCTGGCTTAC 60.741 60.000 18.59 18.59 0.00 2.34
4411 4575 0.393132 GAGTGGAAGGCTGGCTTACC 60.393 60.000 21.93 20.07 0.00 2.85
4412 4576 1.133809 AGTGGAAGGCTGGCTTACCA 61.134 55.000 21.93 22.01 46.51 3.25
4413 4577 0.960861 GTGGAAGGCTGGCTTACCAC 60.961 60.000 30.16 30.16 42.67 4.16
4414 4578 1.133809 TGGAAGGCTGGCTTACCACT 61.134 55.000 21.93 0.00 42.67 4.00
4415 4579 0.393132 GGAAGGCTGGCTTACCACTC 60.393 60.000 17.01 3.10 42.67 3.51
4416 4580 0.741221 GAAGGCTGGCTTACCACTCG 60.741 60.000 17.01 0.00 42.67 4.18
4417 4581 2.125106 GGCTGGCTTACCACTCGG 60.125 66.667 0.00 0.00 42.67 4.63
4419 4583 1.610554 GGCTGGCTTACCACTCGGTA 61.611 60.000 0.00 0.00 46.71 4.02
4431 4595 5.687166 ACCACTCGGTAGGATTTTGATAA 57.313 39.130 0.00 0.00 46.71 1.75
4432 4596 6.057321 ACCACTCGGTAGGATTTTGATAAA 57.943 37.500 0.00 0.00 46.71 1.40
4433 4597 5.878669 ACCACTCGGTAGGATTTTGATAAAC 59.121 40.000 0.00 0.00 46.71 2.01
4434 4598 6.113411 CCACTCGGTAGGATTTTGATAAACT 58.887 40.000 0.00 0.00 0.00 2.66
4435 4599 6.598064 CCACTCGGTAGGATTTTGATAAACTT 59.402 38.462 0.00 0.00 0.00 2.66
4436 4600 7.767198 CCACTCGGTAGGATTTTGATAAACTTA 59.233 37.037 0.00 0.00 0.00 2.24
4437 4601 8.818057 CACTCGGTAGGATTTTGATAAACTTAG 58.182 37.037 0.00 0.00 0.00 2.18
4438 4602 7.985752 ACTCGGTAGGATTTTGATAAACTTAGG 59.014 37.037 0.00 0.00 0.00 2.69
4439 4603 6.764560 TCGGTAGGATTTTGATAAACTTAGGC 59.235 38.462 0.00 0.00 0.00 3.93
4440 4604 6.540914 CGGTAGGATTTTGATAAACTTAGGCA 59.459 38.462 0.00 0.00 0.00 4.75
4441 4605 7.066525 CGGTAGGATTTTGATAAACTTAGGCAA 59.933 37.037 0.00 0.00 0.00 4.52
4442 4606 8.406297 GGTAGGATTTTGATAAACTTAGGCAAG 58.594 37.037 0.00 0.00 37.81 4.01
4444 4608 8.056407 AGGATTTTGATAAACTTAGGCAAGTC 57.944 34.615 3.41 0.00 44.41 3.01
4445 4609 7.122799 AGGATTTTGATAAACTTAGGCAAGTCC 59.877 37.037 3.41 0.00 44.41 3.85
4446 4610 7.122799 GGATTTTGATAAACTTAGGCAAGTCCT 59.877 37.037 3.41 0.00 44.41 3.85
4447 4611 7.833285 TTTTGATAAACTTAGGCAAGTCCTT 57.167 32.000 3.41 0.00 44.75 3.36
4448 4612 6.817765 TTGATAAACTTAGGCAAGTCCTTG 57.182 37.500 2.63 2.63 44.75 3.61
4449 4613 5.253330 TGATAAACTTAGGCAAGTCCTTGG 58.747 41.667 8.97 0.00 44.75 3.61
4450 4614 3.876309 AAACTTAGGCAAGTCCTTGGA 57.124 42.857 8.97 0.00 44.75 3.53
4451 4615 2.861147 ACTTAGGCAAGTCCTTGGAC 57.139 50.000 11.59 11.59 44.75 4.02
4452 4616 2.339769 ACTTAGGCAAGTCCTTGGACT 58.660 47.619 15.93 15.93 44.75 3.85
4453 4617 2.039084 ACTTAGGCAAGTCCTTGGACTG 59.961 50.000 21.45 15.93 44.75 3.51
4454 4618 0.324943 TAGGCAAGTCCTTGGACTGC 59.675 55.000 21.45 22.64 44.75 4.40
4455 4619 1.228245 GGCAAGTCCTTGGACTGCA 60.228 57.895 27.96 0.00 40.74 4.41
4456 4620 1.239968 GGCAAGTCCTTGGACTGCAG 61.240 60.000 27.96 13.48 40.74 4.41
4457 4621 1.860484 GCAAGTCCTTGGACTGCAGC 61.860 60.000 21.45 20.03 40.74 5.25
4458 4622 0.250640 CAAGTCCTTGGACTGCAGCT 60.251 55.000 21.45 4.28 36.95 4.24
4459 4623 1.002430 CAAGTCCTTGGACTGCAGCTA 59.998 52.381 21.45 1.42 36.95 3.32
4460 4624 1.352083 AGTCCTTGGACTGCAGCTAA 58.648 50.000 20.27 9.98 33.58 3.09
4461 4625 1.277557 AGTCCTTGGACTGCAGCTAAG 59.722 52.381 20.27 18.29 33.58 2.18
4462 4626 0.036010 TCCTTGGACTGCAGCTAAGC 60.036 55.000 15.27 0.00 0.00 3.09
4463 4627 1.028868 CCTTGGACTGCAGCTAAGCC 61.029 60.000 15.27 8.35 0.00 4.35
4464 4628 1.002134 TTGGACTGCAGCTAAGCCC 60.002 57.895 15.27 6.29 0.00 5.19
4465 4629 2.124529 GGACTGCAGCTAAGCCCC 60.125 66.667 15.27 0.00 0.00 5.80
4466 4630 2.124529 GACTGCAGCTAAGCCCCC 60.125 66.667 15.27 0.00 0.00 5.40
4467 4631 4.101448 ACTGCAGCTAAGCCCCCG 62.101 66.667 15.27 0.00 0.00 5.73
4468 4632 3.785859 CTGCAGCTAAGCCCCCGA 61.786 66.667 0.00 0.00 0.00 5.14
4469 4633 3.746949 CTGCAGCTAAGCCCCCGAG 62.747 68.421 0.00 0.00 0.00 4.63
4470 4634 3.787001 GCAGCTAAGCCCCCGAGT 61.787 66.667 0.00 0.00 0.00 4.18
4471 4635 2.187946 CAGCTAAGCCCCCGAGTG 59.812 66.667 0.00 0.00 0.00 3.51
4472 4636 3.083997 AGCTAAGCCCCCGAGTGG 61.084 66.667 0.00 0.00 0.00 4.00
4473 4637 3.081409 GCTAAGCCCCCGAGTGGA 61.081 66.667 0.00 0.00 37.49 4.02
4474 4638 2.666098 GCTAAGCCCCCGAGTGGAA 61.666 63.158 0.00 0.00 37.49 3.53
4475 4639 1.522569 CTAAGCCCCCGAGTGGAAG 59.477 63.158 0.00 0.00 37.49 3.46
4476 4640 1.972660 CTAAGCCCCCGAGTGGAAGG 61.973 65.000 0.00 0.00 37.49 3.46
4479 4643 4.101448 CCCCCGAGTGGAAGGCTG 62.101 72.222 0.00 0.00 37.49 4.85
4480 4644 4.101448 CCCCGAGTGGAAGGCTGG 62.101 72.222 0.00 0.00 37.49 4.85
4481 4645 4.785453 CCCGAGTGGAAGGCTGGC 62.785 72.222 0.00 0.00 37.49 4.85
4482 4646 3.710722 CCGAGTGGAAGGCTGGCT 61.711 66.667 0.00 0.00 37.49 4.75
4483 4647 2.348998 CGAGTGGAAGGCTGGCTT 59.651 61.111 17.01 17.01 0.00 4.35
4484 4648 1.596934 CGAGTGGAAGGCTGGCTTA 59.403 57.895 17.01 0.00 0.00 3.09
4485 4649 0.741221 CGAGTGGAAGGCTGGCTTAC 60.741 60.000 18.59 18.59 0.00 2.34
4486 4650 0.393132 GAGTGGAAGGCTGGCTTACC 60.393 60.000 21.93 20.07 0.00 2.85
4487 4651 1.133809 AGTGGAAGGCTGGCTTACCA 61.134 55.000 21.93 22.01 46.51 3.25
4488 4652 0.960861 GTGGAAGGCTGGCTTACCAC 60.961 60.000 30.16 30.16 42.67 4.16
4489 4653 1.133809 TGGAAGGCTGGCTTACCACT 61.134 55.000 21.93 0.00 42.67 4.00
4490 4654 0.393132 GGAAGGCTGGCTTACCACTC 60.393 60.000 17.01 3.10 42.67 3.51
4491 4655 0.741221 GAAGGCTGGCTTACCACTCG 60.741 60.000 17.01 0.00 42.67 4.18
4492 4656 2.125106 GGCTGGCTTACCACTCGG 60.125 66.667 0.00 0.00 42.67 4.63
4494 4658 1.610554 GGCTGGCTTACCACTCGGTA 61.611 60.000 0.00 0.00 46.71 4.02
4506 4670 5.687166 ACCACTCGGTAGGATTTTGATAA 57.313 39.130 0.00 0.00 46.71 1.75
4507 4671 6.057321 ACCACTCGGTAGGATTTTGATAAA 57.943 37.500 0.00 0.00 46.71 1.40
4508 4672 5.878669 ACCACTCGGTAGGATTTTGATAAAC 59.121 40.000 0.00 0.00 46.71 2.01
4509 4673 6.113411 CCACTCGGTAGGATTTTGATAAACT 58.887 40.000 0.00 0.00 0.00 2.66
4510 4674 6.598064 CCACTCGGTAGGATTTTGATAAACTT 59.402 38.462 0.00 0.00 0.00 2.66
4511 4675 7.767198 CCACTCGGTAGGATTTTGATAAACTTA 59.233 37.037 0.00 0.00 0.00 2.24
4512 4676 8.818057 CACTCGGTAGGATTTTGATAAACTTAG 58.182 37.037 0.00 0.00 0.00 2.18
4513 4677 7.985752 ACTCGGTAGGATTTTGATAAACTTAGG 59.014 37.037 0.00 0.00 0.00 2.69
4514 4678 6.764560 TCGGTAGGATTTTGATAAACTTAGGC 59.235 38.462 0.00 0.00 0.00 3.93
4515 4679 6.292703 CGGTAGGATTTTGATAAACTTAGGCG 60.293 42.308 0.00 0.00 0.00 5.52
4516 4680 6.764560 GGTAGGATTTTGATAAACTTAGGCGA 59.235 38.462 0.00 0.00 0.00 5.54
4517 4681 6.927294 AGGATTTTGATAAACTTAGGCGAG 57.073 37.500 0.00 0.00 0.00 5.03
4518 4682 6.415573 AGGATTTTGATAAACTTAGGCGAGT 58.584 36.000 0.00 0.00 0.00 4.18
4519 4683 6.539103 AGGATTTTGATAAACTTAGGCGAGTC 59.461 38.462 0.00 0.00 0.00 3.36
4520 4684 6.238402 GGATTTTGATAAACTTAGGCGAGTCC 60.238 42.308 0.00 0.00 0.00 3.85
4522 4686 5.416271 TTGATAAACTTAGGCGAGTCCTT 57.584 39.130 0.00 0.00 44.75 3.36
4523 4687 4.755411 TGATAAACTTAGGCGAGTCCTTG 58.245 43.478 0.00 0.00 44.75 3.61
4524 4688 2.474410 AAACTTAGGCGAGTCCTTGG 57.526 50.000 0.00 0.00 44.75 3.61
4525 4689 1.640917 AACTTAGGCGAGTCCTTGGA 58.359 50.000 0.00 0.00 44.75 3.53
4526 4690 0.896226 ACTTAGGCGAGTCCTTGGAC 59.104 55.000 11.59 11.59 44.75 4.02
4527 4691 1.187087 CTTAGGCGAGTCCTTGGACT 58.813 55.000 20.95 20.95 44.75 3.85
4528 4692 0.895530 TTAGGCGAGTCCTTGGACTG 59.104 55.000 25.10 17.44 44.75 3.51
4529 4693 1.605058 TAGGCGAGTCCTTGGACTGC 61.605 60.000 25.10 24.07 44.75 4.40
4530 4694 2.343758 GCGAGTCCTTGGACTGCA 59.656 61.111 25.10 0.00 35.23 4.41
4531 4695 1.739562 GCGAGTCCTTGGACTGCAG 60.740 63.158 25.10 13.48 35.23 4.41
4532 4696 1.739562 CGAGTCCTTGGACTGCAGC 60.740 63.158 25.10 10.84 35.23 5.25
4533 4697 1.676384 GAGTCCTTGGACTGCAGCT 59.324 57.895 25.10 0.23 35.23 4.24
4534 4698 0.898320 GAGTCCTTGGACTGCAGCTA 59.102 55.000 25.10 1.42 35.23 3.32
4535 4699 1.276421 GAGTCCTTGGACTGCAGCTAA 59.724 52.381 25.10 9.98 35.23 3.09
4536 4700 1.277557 AGTCCTTGGACTGCAGCTAAG 59.722 52.381 20.27 18.29 33.58 2.18
4537 4701 0.036010 TCCTTGGACTGCAGCTAAGC 60.036 55.000 15.27 0.00 0.00 3.09
4538 4702 1.028868 CCTTGGACTGCAGCTAAGCC 61.029 60.000 15.27 8.35 0.00 4.35
4539 4703 0.035630 CTTGGACTGCAGCTAAGCCT 60.036 55.000 15.27 0.00 0.00 4.58
4540 4704 0.036010 TTGGACTGCAGCTAAGCCTC 60.036 55.000 15.27 1.14 0.00 4.70
4608 4772 1.575576 GAGTGCTTGGACTGCAGCTG 61.576 60.000 15.27 10.11 41.41 4.24
4632 4796 2.348998 CGAGTGGAAGGCTGGCTT 59.651 61.111 17.01 17.01 0.00 4.35
4634 4798 0.741221 CGAGTGGAAGGCTGGCTTAC 60.741 60.000 18.59 18.59 0.00 2.34
4656 4820 6.057321 ACCACTCGGTAGGATTTTGATAAA 57.943 37.500 0.00 0.00 46.71 1.40
4657 4821 5.878669 ACCACTCGGTAGGATTTTGATAAAC 59.121 40.000 0.00 0.00 46.71 2.01
4659 4823 6.598064 CCACTCGGTAGGATTTTGATAAACTT 59.402 38.462 0.00 0.00 0.00 2.66
4660 4824 7.767198 CCACTCGGTAGGATTTTGATAAACTTA 59.233 37.037 0.00 0.00 0.00 2.24
4662 4826 7.985752 ACTCGGTAGGATTTTGATAAACTTAGG 59.014 37.037 0.00 0.00 0.00 2.69
4663 4827 6.764560 TCGGTAGGATTTTGATAAACTTAGGC 59.235 38.462 0.00 0.00 0.00 3.93
4664 4828 6.292703 CGGTAGGATTTTGATAAACTTAGGCG 60.293 42.308 0.00 0.00 0.00 5.52
4666 4830 6.927294 AGGATTTTGATAAACTTAGGCGAG 57.073 37.500 0.00 0.00 0.00 5.03
4667 4831 6.415573 AGGATTTTGATAAACTTAGGCGAGT 58.584 36.000 0.00 0.00 0.00 4.18
4668 4832 6.539103 AGGATTTTGATAAACTTAGGCGAGTC 59.461 38.462 0.00 0.00 0.00 3.36
4669 4833 6.238402 GGATTTTGATAAACTTAGGCGAGTCC 60.238 42.308 0.00 0.00 0.00 3.85
4672 4836 4.755411 TGATAAACTTAGGCGAGTCCTTG 58.245 43.478 0.00 0.00 44.75 3.61
4673 4837 2.474410 AAACTTAGGCGAGTCCTTGG 57.526 50.000 0.00 0.00 44.75 3.61
4674 4838 1.640917 AACTTAGGCGAGTCCTTGGA 58.359 50.000 0.00 0.00 44.75 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 3.710722 CCCTCTTCTGGCTGCGGT 61.711 66.667 0.00 0.00 0.00 5.68
119 120 1.078567 CTCACCCTCTTCTGGCTGC 60.079 63.158 0.00 0.00 0.00 5.25
147 148 0.888736 CGGTCAACATGAGTGGCCAA 60.889 55.000 7.24 0.00 0.00 4.52
182 183 1.067635 CCACGGAAGAAAATGCTTGGG 60.068 52.381 0.00 0.00 0.00 4.12
233 234 4.148838 CAATGGAGTTTGGGGTAAAGTGA 58.851 43.478 0.00 0.00 32.13 3.41
383 384 0.395312 ACATTTGGACGACTCGGGTT 59.605 50.000 2.98 0.00 0.00 4.11
605 606 2.349590 CGCTCCATCAACATCTTCACA 58.650 47.619 0.00 0.00 0.00 3.58
836 837 1.207791 GAGGAATCCTTCTGGCTCCA 58.792 55.000 2.09 0.00 37.46 3.86
904 905 4.866508 TGAATACGACAAGGACTCAGTT 57.133 40.909 0.00 0.00 0.00 3.16
947 948 1.821753 CCAGACAAGGATCAGTCGACT 59.178 52.381 13.58 13.58 39.67 4.18
964 965 1.992519 AAGGCCTAGCAGATGCCCAG 61.993 60.000 5.16 0.00 46.55 4.45
1724 1726 0.464554 GCATCCTGAGGCACCTTACC 60.465 60.000 0.00 0.00 38.12 2.85
2136 2138 1.893786 CCAGCAGTCGACCTTAGCT 59.106 57.895 13.01 13.78 35.63 3.32
3225 3231 0.469144 GGGTCAAGGTTTGGCTCCAA 60.469 55.000 0.00 0.00 35.12 3.53
3926 3937 5.644636 CGCCTAAGTTACAAAAATCCTACCA 59.355 40.000 0.00 0.00 0.00 3.25
4015 4102 2.105128 CCTCGTGCTCGCCTAAGG 59.895 66.667 2.69 1.19 36.96 2.69
4067 4155 6.540438 AGTTATCAAAATCCTACCGAGTGA 57.460 37.500 0.00 0.00 0.00 3.41
4115 4278 2.537714 AATCCTCTCACTCGGGGGCT 62.538 60.000 0.00 0.00 0.00 5.19
4116 4279 2.066999 AATCCTCTCACTCGGGGGC 61.067 63.158 0.00 0.00 0.00 5.80
4117 4280 1.826024 CAATCCTCTCACTCGGGGG 59.174 63.158 0.00 0.00 0.00 5.40
4118 4281 1.144936 GCAATCCTCTCACTCGGGG 59.855 63.158 0.00 0.00 0.00 5.73
4119 4282 0.103937 GAGCAATCCTCTCACTCGGG 59.896 60.000 0.00 0.00 37.60 5.14
4120 4283 3.657956 GAGCAATCCTCTCACTCGG 57.342 57.895 0.00 0.00 37.60 4.63
4128 4291 1.205893 ACCGAGTGAAGAGCAATCCTC 59.794 52.381 0.00 0.00 38.32 3.71
4129 4292 1.270907 ACCGAGTGAAGAGCAATCCT 58.729 50.000 0.00 0.00 38.32 3.24
4130 4293 2.482142 CCTACCGAGTGAAGAGCAATCC 60.482 54.545 0.00 0.00 38.32 3.01
4131 4294 2.427453 TCCTACCGAGTGAAGAGCAATC 59.573 50.000 0.00 0.00 38.20 2.67
4132 4295 2.457598 TCCTACCGAGTGAAGAGCAAT 58.542 47.619 0.00 0.00 0.00 3.56
4133 4296 1.919240 TCCTACCGAGTGAAGAGCAA 58.081 50.000 0.00 0.00 0.00 3.91
4134 4297 2.145397 ATCCTACCGAGTGAAGAGCA 57.855 50.000 0.00 0.00 0.00 4.26
4135 4298 3.528597 AAATCCTACCGAGTGAAGAGC 57.471 47.619 0.00 0.00 0.00 4.09
4136 4299 5.073311 TCAAAATCCTACCGAGTGAAGAG 57.927 43.478 0.00 0.00 0.00 2.85
4137 4300 5.677319 ATCAAAATCCTACCGAGTGAAGA 57.323 39.130 0.00 0.00 0.00 2.87
4138 4301 7.042335 AGTTATCAAAATCCTACCGAGTGAAG 58.958 38.462 0.00 0.00 0.00 3.02
4139 4302 6.942976 AGTTATCAAAATCCTACCGAGTGAA 58.057 36.000 0.00 0.00 0.00 3.18
4140 4303 6.540438 AGTTATCAAAATCCTACCGAGTGA 57.460 37.500 0.00 0.00 0.00 3.41
4141 4304 7.438459 CCTAAGTTATCAAAATCCTACCGAGTG 59.562 40.741 0.00 0.00 0.00 3.51
4142 4305 7.498443 CCTAAGTTATCAAAATCCTACCGAGT 58.502 38.462 0.00 0.00 0.00 4.18
4143 4306 6.424207 GCCTAAGTTATCAAAATCCTACCGAG 59.576 42.308 0.00 0.00 0.00 4.63
4144 4307 6.285990 GCCTAAGTTATCAAAATCCTACCGA 58.714 40.000 0.00 0.00 0.00 4.69
4145 4308 5.176958 CGCCTAAGTTATCAAAATCCTACCG 59.823 44.000 0.00 0.00 0.00 4.02
4146 4309 6.285990 TCGCCTAAGTTATCAAAATCCTACC 58.714 40.000 0.00 0.00 0.00 3.18
4147 4310 6.073711 GCTCGCCTAAGTTATCAAAATCCTAC 60.074 42.308 0.00 0.00 0.00 3.18
4148 4311 5.989777 GCTCGCCTAAGTTATCAAAATCCTA 59.010 40.000 0.00 0.00 0.00 2.94
4149 4312 4.816925 GCTCGCCTAAGTTATCAAAATCCT 59.183 41.667 0.00 0.00 0.00 3.24
4150 4313 4.574828 TGCTCGCCTAAGTTATCAAAATCC 59.425 41.667 0.00 0.00 0.00 3.01
4151 4314 5.502606 GTGCTCGCCTAAGTTATCAAAATC 58.497 41.667 0.00 0.00 0.00 2.17
4152 4315 4.034048 CGTGCTCGCCTAAGTTATCAAAAT 59.966 41.667 0.00 0.00 0.00 1.82
4153 4316 3.369756 CGTGCTCGCCTAAGTTATCAAAA 59.630 43.478 0.00 0.00 0.00 2.44
4154 4317 2.927477 CGTGCTCGCCTAAGTTATCAAA 59.073 45.455 0.00 0.00 0.00 2.69
4155 4318 2.164827 TCGTGCTCGCCTAAGTTATCAA 59.835 45.455 2.69 0.00 36.96 2.57
4156 4319 1.746787 TCGTGCTCGCCTAAGTTATCA 59.253 47.619 2.69 0.00 36.96 2.15
4157 4320 2.386249 CTCGTGCTCGCCTAAGTTATC 58.614 52.381 2.69 0.00 36.96 1.75
4158 4321 1.067212 CCTCGTGCTCGCCTAAGTTAT 59.933 52.381 2.69 0.00 36.96 1.89
4159 4322 0.454600 CCTCGTGCTCGCCTAAGTTA 59.545 55.000 2.69 0.00 36.96 2.24
4160 4323 1.215647 CCTCGTGCTCGCCTAAGTT 59.784 57.895 2.69 0.00 36.96 2.66
4161 4324 1.935327 GACCTCGTGCTCGCCTAAGT 61.935 60.000 2.69 0.00 36.96 2.24
4162 4325 1.226717 GACCTCGTGCTCGCCTAAG 60.227 63.158 2.69 0.00 36.96 2.18
4163 4326 2.882876 GACCTCGTGCTCGCCTAA 59.117 61.111 2.69 0.00 36.96 2.69
4164 4327 3.506096 CGACCTCGTGCTCGCCTA 61.506 66.667 2.69 0.00 36.96 3.93
4169 4332 2.543687 TTAGCTGCGACCTCGTGCTC 62.544 60.000 16.44 0.00 44.65 4.26
4170 4333 2.549611 CTTAGCTGCGACCTCGTGCT 62.550 60.000 16.90 16.90 46.26 4.40
4171 4334 2.126071 TTAGCTGCGACCTCGTGC 60.126 61.111 0.00 6.69 42.22 5.34
4172 4335 2.161486 GCTTAGCTGCGACCTCGTG 61.161 63.158 0.00 0.00 42.22 4.35
4173 4336 2.182030 GCTTAGCTGCGACCTCGT 59.818 61.111 0.00 0.00 42.22 4.18
4174 4337 2.583593 GGCTTAGCTGCGACCTCG 60.584 66.667 3.59 0.00 43.27 4.63
4175 4338 1.227118 GAGGCTTAGCTGCGACCTC 60.227 63.158 14.35 14.35 40.14 3.85
4176 4339 2.726351 GGAGGCTTAGCTGCGACCT 61.726 63.158 3.59 5.67 0.00 3.85
4177 4340 2.202946 GGAGGCTTAGCTGCGACC 60.203 66.667 3.59 0.00 0.00 4.79
4178 4341 2.583593 CGGAGGCTTAGCTGCGAC 60.584 66.667 3.59 0.00 36.54 5.19
4179 4342 2.754254 TCGGAGGCTTAGCTGCGA 60.754 61.111 13.63 13.63 40.84 5.10
4180 4343 2.279120 CTCGGAGGCTTAGCTGCG 60.279 66.667 3.59 7.64 35.78 5.18
4181 4344 1.520342 CACTCGGAGGCTTAGCTGC 60.520 63.158 10.23 0.00 0.00 5.25
4182 4345 1.142748 CCACTCGGAGGCTTAGCTG 59.857 63.158 10.23 0.00 0.00 4.24
4183 4346 0.614979 TTCCACTCGGAGGCTTAGCT 60.615 55.000 10.23 0.00 44.10 3.32
4184 4347 0.179097 CTTCCACTCGGAGGCTTAGC 60.179 60.000 10.23 0.00 44.10 3.09
4185 4348 0.461961 CCTTCCACTCGGAGGCTTAG 59.538 60.000 10.23 1.74 44.10 2.18
4186 4349 1.614241 GCCTTCCACTCGGAGGCTTA 61.614 60.000 10.23 0.00 45.21 3.09
4187 4350 2.960688 GCCTTCCACTCGGAGGCTT 61.961 63.158 10.23 0.00 45.21 4.35
4230 4393 3.489738 GCCTCGTGTTCGCCTAAGTTATA 60.490 47.826 0.00 0.00 36.96 0.98
4244 4408 1.079543 CTTAGCTGCAGCCTCGTGT 60.080 57.895 34.39 17.78 43.38 4.49
4267 4431 2.348998 AAGCCAGCCTTCCACTCG 59.651 61.111 0.00 0.00 0.00 4.18
4295 4459 1.028868 GGGCTTAGCTGCAGTCCAAG 61.029 60.000 16.64 15.95 35.91 3.61
4296 4460 1.002134 GGGCTTAGCTGCAGTCCAA 60.002 57.895 16.64 6.12 35.91 3.53
4297 4461 2.671070 GGGCTTAGCTGCAGTCCA 59.329 61.111 16.64 0.00 35.91 4.02
4298 4462 2.124529 GGGGCTTAGCTGCAGTCC 60.125 66.667 16.64 9.44 35.00 3.85
4299 4463 2.124529 GGGGGCTTAGCTGCAGTC 60.125 66.667 16.64 7.83 34.04 3.51
4300 4464 4.101448 CGGGGGCTTAGCTGCAGT 62.101 66.667 16.64 4.79 34.04 4.40
4301 4465 3.746949 CTCGGGGGCTTAGCTGCAG 62.747 68.421 10.11 10.11 34.04 4.41
4302 4466 3.785859 CTCGGGGGCTTAGCTGCA 61.786 66.667 3.59 0.00 34.04 4.41
4303 4467 3.787001 ACTCGGGGGCTTAGCTGC 61.787 66.667 3.59 0.00 0.00 5.25
4304 4468 2.187946 CACTCGGGGGCTTAGCTG 59.812 66.667 3.59 0.00 0.00 4.24
4305 4469 3.083997 CCACTCGGGGGCTTAGCT 61.084 66.667 3.59 0.00 0.00 3.32
4306 4470 2.595009 CTTCCACTCGGGGGCTTAGC 62.595 65.000 0.00 0.00 37.22 3.09
4307 4471 1.522569 CTTCCACTCGGGGGCTTAG 59.477 63.158 0.00 0.00 37.22 2.18
4308 4472 1.993391 CCTTCCACTCGGGGGCTTA 60.993 63.158 0.00 0.00 37.22 3.09
4309 4473 3.330720 CCTTCCACTCGGGGGCTT 61.331 66.667 0.00 0.00 37.22 4.35
4312 4476 4.101448 CAGCCTTCCACTCGGGGG 62.101 72.222 0.00 0.00 37.22 5.40
4313 4477 4.101448 CCAGCCTTCCACTCGGGG 62.101 72.222 0.00 0.00 37.22 5.73
4314 4478 4.785453 GCCAGCCTTCCACTCGGG 62.785 72.222 0.00 0.00 38.37 5.14
4315 4479 1.899437 TAAGCCAGCCTTCCACTCGG 61.899 60.000 0.00 0.00 34.95 4.63
4316 4480 0.741221 GTAAGCCAGCCTTCCACTCG 60.741 60.000 0.00 0.00 34.95 4.18
4317 4481 0.393132 GGTAAGCCAGCCTTCCACTC 60.393 60.000 0.00 0.00 34.95 3.51
4318 4482 1.133809 TGGTAAGCCAGCCTTCCACT 61.134 55.000 0.00 0.00 40.46 4.00
4319 4483 1.378762 TGGTAAGCCAGCCTTCCAC 59.621 57.895 0.00 0.00 40.46 4.02
4320 4484 3.914645 TGGTAAGCCAGCCTTCCA 58.085 55.556 0.00 0.00 40.46 3.53
4335 4499 6.113411 AGTTTATCAAAATCCTACCGAGTGG 58.887 40.000 0.00 0.00 42.84 4.00
4336 4500 7.611213 AAGTTTATCAAAATCCTACCGAGTG 57.389 36.000 0.00 0.00 0.00 3.51
4337 4501 7.985752 CCTAAGTTTATCAAAATCCTACCGAGT 59.014 37.037 0.00 0.00 0.00 4.18
4338 4502 7.041984 GCCTAAGTTTATCAAAATCCTACCGAG 60.042 40.741 0.00 0.00 0.00 4.63
4339 4503 6.764560 GCCTAAGTTTATCAAAATCCTACCGA 59.235 38.462 0.00 0.00 0.00 4.69
4340 4504 6.292703 CGCCTAAGTTTATCAAAATCCTACCG 60.293 42.308 0.00 0.00 0.00 4.02
4341 4505 6.764560 TCGCCTAAGTTTATCAAAATCCTACC 59.235 38.462 0.00 0.00 0.00 3.18
4342 4506 7.494952 ACTCGCCTAAGTTTATCAAAATCCTAC 59.505 37.037 0.00 0.00 0.00 3.18
4343 4507 7.494625 CACTCGCCTAAGTTTATCAAAATCCTA 59.505 37.037 0.00 0.00 0.00 2.94
4344 4508 6.316390 CACTCGCCTAAGTTTATCAAAATCCT 59.684 38.462 0.00 0.00 0.00 3.24
4345 4509 6.487103 CACTCGCCTAAGTTTATCAAAATCC 58.513 40.000 0.00 0.00 0.00 3.01
4346 4510 5.965918 GCACTCGCCTAAGTTTATCAAAATC 59.034 40.000 0.00 0.00 0.00 2.17
4347 4511 5.648092 AGCACTCGCCTAAGTTTATCAAAAT 59.352 36.000 0.00 0.00 39.83 1.82
4348 4512 5.001232 AGCACTCGCCTAAGTTTATCAAAA 58.999 37.500 0.00 0.00 39.83 2.44
4349 4513 4.575885 AGCACTCGCCTAAGTTTATCAAA 58.424 39.130 0.00 0.00 39.83 2.69
4350 4514 4.202245 AGCACTCGCCTAAGTTTATCAA 57.798 40.909 0.00 0.00 39.83 2.57
4351 4515 3.887621 AGCACTCGCCTAAGTTTATCA 57.112 42.857 0.00 0.00 39.83 2.15
4352 4516 3.309954 CCAAGCACTCGCCTAAGTTTATC 59.690 47.826 0.00 0.00 39.83 1.75
4353 4517 3.055385 TCCAAGCACTCGCCTAAGTTTAT 60.055 43.478 0.00 0.00 39.83 1.40
4354 4518 2.300723 TCCAAGCACTCGCCTAAGTTTA 59.699 45.455 0.00 0.00 39.83 2.01
4355 4519 1.071699 TCCAAGCACTCGCCTAAGTTT 59.928 47.619 0.00 0.00 39.83 2.66
4356 4520 0.685097 TCCAAGCACTCGCCTAAGTT 59.315 50.000 0.00 0.00 39.83 2.66
4357 4521 0.037232 GTCCAAGCACTCGCCTAAGT 60.037 55.000 0.00 0.00 39.83 2.24
4358 4522 0.247736 AGTCCAAGCACTCGCCTAAG 59.752 55.000 0.00 0.00 39.83 2.18
4359 4523 0.037326 CAGTCCAAGCACTCGCCTAA 60.037 55.000 0.00 0.00 39.83 2.69
4360 4524 1.591703 CAGTCCAAGCACTCGCCTA 59.408 57.895 0.00 0.00 39.83 3.93
4361 4525 2.345244 CAGTCCAAGCACTCGCCT 59.655 61.111 0.00 0.00 39.83 5.52
4362 4526 3.426568 GCAGTCCAAGCACTCGCC 61.427 66.667 0.00 0.00 39.83 5.54
4363 4527 2.666190 TGCAGTCCAAGCACTCGC 60.666 61.111 0.00 0.00 37.02 5.03
4364 4528 2.675056 GCTGCAGTCCAAGCACTCG 61.675 63.158 16.64 0.00 37.02 4.18
4365 4529 0.036952 TAGCTGCAGTCCAAGCACTC 60.037 55.000 16.64 0.00 37.02 3.51
4366 4530 0.397941 TTAGCTGCAGTCCAAGCACT 59.602 50.000 16.64 3.46 37.02 4.40
4367 4531 0.801251 CTTAGCTGCAGTCCAAGCAC 59.199 55.000 16.64 0.00 37.02 4.40
4368 4532 0.957395 GCTTAGCTGCAGTCCAAGCA 60.957 55.000 28.67 6.13 40.96 3.91
4369 4533 1.652167 GGCTTAGCTGCAGTCCAAGC 61.652 60.000 27.08 27.08 40.65 4.01
4370 4534 1.028868 GGGCTTAGCTGCAGTCCAAG 61.029 60.000 16.64 15.95 35.91 3.61
4371 4535 1.002134 GGGCTTAGCTGCAGTCCAA 60.002 57.895 16.64 6.12 35.91 3.53
4372 4536 2.671070 GGGCTTAGCTGCAGTCCA 59.329 61.111 16.64 0.00 35.91 4.02
4373 4537 2.124529 GGGGCTTAGCTGCAGTCC 60.125 66.667 16.64 9.44 35.00 3.85
4374 4538 2.124529 GGGGGCTTAGCTGCAGTC 60.125 66.667 16.64 7.83 34.04 3.51
4375 4539 4.101448 CGGGGGCTTAGCTGCAGT 62.101 66.667 16.64 4.79 34.04 4.40
4376 4540 3.746949 CTCGGGGGCTTAGCTGCAG 62.747 68.421 10.11 10.11 34.04 4.41
4377 4541 3.785859 CTCGGGGGCTTAGCTGCA 61.786 66.667 3.59 0.00 34.04 4.41
4378 4542 3.787001 ACTCGGGGGCTTAGCTGC 61.787 66.667 3.59 0.00 0.00 5.25
4379 4543 2.187946 CACTCGGGGGCTTAGCTG 59.812 66.667 3.59 0.00 0.00 4.24
4380 4544 3.083997 CCACTCGGGGGCTTAGCT 61.084 66.667 3.59 0.00 0.00 3.32
4381 4545 2.595009 CTTCCACTCGGGGGCTTAGC 62.595 65.000 0.00 0.00 37.22 3.09
4382 4546 1.522569 CTTCCACTCGGGGGCTTAG 59.477 63.158 0.00 0.00 37.22 2.18
4383 4547 1.993391 CCTTCCACTCGGGGGCTTA 60.993 63.158 0.00 0.00 37.22 3.09
4384 4548 3.330720 CCTTCCACTCGGGGGCTT 61.331 66.667 0.00 0.00 37.22 4.35
4387 4551 4.101448 CAGCCTTCCACTCGGGGG 62.101 72.222 0.00 0.00 37.22 5.40
4388 4552 4.101448 CCAGCCTTCCACTCGGGG 62.101 72.222 0.00 0.00 37.22 5.73
4389 4553 4.785453 GCCAGCCTTCCACTCGGG 62.785 72.222 0.00 0.00 38.37 5.14
4390 4554 1.899437 TAAGCCAGCCTTCCACTCGG 61.899 60.000 0.00 0.00 34.95 4.63
4391 4555 0.741221 GTAAGCCAGCCTTCCACTCG 60.741 60.000 0.00 0.00 34.95 4.18
4392 4556 0.393132 GGTAAGCCAGCCTTCCACTC 60.393 60.000 0.00 0.00 34.95 3.51
4393 4557 1.133809 TGGTAAGCCAGCCTTCCACT 61.134 55.000 0.00 0.00 40.46 4.00
4394 4558 1.378762 TGGTAAGCCAGCCTTCCAC 59.621 57.895 0.00 0.00 40.46 4.02
4395 4559 3.914645 TGGTAAGCCAGCCTTCCA 58.085 55.556 0.00 0.00 40.46 3.53
4410 4574 6.113411 AGTTTATCAAAATCCTACCGAGTGG 58.887 40.000 0.00 0.00 42.84 4.00
4411 4575 7.611213 AAGTTTATCAAAATCCTACCGAGTG 57.389 36.000 0.00 0.00 0.00 3.51
4412 4576 7.985752 CCTAAGTTTATCAAAATCCTACCGAGT 59.014 37.037 0.00 0.00 0.00 4.18
4413 4577 7.041984 GCCTAAGTTTATCAAAATCCTACCGAG 60.042 40.741 0.00 0.00 0.00 4.63
4414 4578 6.764560 GCCTAAGTTTATCAAAATCCTACCGA 59.235 38.462 0.00 0.00 0.00 4.69
4415 4579 6.540914 TGCCTAAGTTTATCAAAATCCTACCG 59.459 38.462 0.00 0.00 0.00 4.02
4416 4580 7.875327 TGCCTAAGTTTATCAAAATCCTACC 57.125 36.000 0.00 0.00 0.00 3.18
4417 4581 8.957466 ACTTGCCTAAGTTTATCAAAATCCTAC 58.043 33.333 0.00 0.00 44.57 3.18
4418 4582 9.174166 GACTTGCCTAAGTTTATCAAAATCCTA 57.826 33.333 0.00 0.00 46.79 2.94
4419 4583 7.122799 GGACTTGCCTAAGTTTATCAAAATCCT 59.877 37.037 0.00 0.00 46.79 3.24
4420 4584 7.258441 GGACTTGCCTAAGTTTATCAAAATCC 58.742 38.462 0.00 0.00 46.79 3.01
4442 4606 1.731720 CTTAGCTGCAGTCCAAGGAC 58.268 55.000 16.64 11.29 44.86 3.85
4443 4607 0.036010 GCTTAGCTGCAGTCCAAGGA 60.036 55.000 16.64 0.00 0.00 3.36
4444 4608 1.028868 GGCTTAGCTGCAGTCCAAGG 61.029 60.000 16.64 2.64 34.04 3.61
4445 4609 1.028868 GGGCTTAGCTGCAGTCCAAG 61.029 60.000 16.64 15.95 35.91 3.61
4446 4610 1.002134 GGGCTTAGCTGCAGTCCAA 60.002 57.895 16.64 6.12 35.91 3.53
4447 4611 2.671070 GGGCTTAGCTGCAGTCCA 59.329 61.111 16.64 0.00 35.91 4.02
4448 4612 2.124529 GGGGCTTAGCTGCAGTCC 60.125 66.667 16.64 9.44 35.00 3.85
4449 4613 2.124529 GGGGGCTTAGCTGCAGTC 60.125 66.667 16.64 7.83 34.04 3.51
4450 4614 4.101448 CGGGGGCTTAGCTGCAGT 62.101 66.667 16.64 4.79 34.04 4.40
4451 4615 3.746949 CTCGGGGGCTTAGCTGCAG 62.747 68.421 10.11 10.11 34.04 4.41
4452 4616 3.785859 CTCGGGGGCTTAGCTGCA 61.786 66.667 3.59 0.00 34.04 4.41
4453 4617 3.787001 ACTCGGGGGCTTAGCTGC 61.787 66.667 3.59 0.00 0.00 5.25
4454 4618 2.187946 CACTCGGGGGCTTAGCTG 59.812 66.667 3.59 0.00 0.00 4.24
4455 4619 3.083997 CCACTCGGGGGCTTAGCT 61.084 66.667 3.59 0.00 0.00 3.32
4456 4620 2.595009 CTTCCACTCGGGGGCTTAGC 62.595 65.000 0.00 0.00 37.22 3.09
4457 4621 1.522569 CTTCCACTCGGGGGCTTAG 59.477 63.158 0.00 0.00 37.22 2.18
4458 4622 1.993391 CCTTCCACTCGGGGGCTTA 60.993 63.158 0.00 0.00 37.22 3.09
4459 4623 3.330720 CCTTCCACTCGGGGGCTT 61.331 66.667 0.00 0.00 37.22 4.35
4462 4626 4.101448 CAGCCTTCCACTCGGGGG 62.101 72.222 0.00 0.00 37.22 5.40
4463 4627 4.101448 CCAGCCTTCCACTCGGGG 62.101 72.222 0.00 0.00 37.22 5.73
4464 4628 4.785453 GCCAGCCTTCCACTCGGG 62.785 72.222 0.00 0.00 38.37 5.14
4465 4629 1.899437 TAAGCCAGCCTTCCACTCGG 61.899 60.000 0.00 0.00 34.95 4.63
4466 4630 0.741221 GTAAGCCAGCCTTCCACTCG 60.741 60.000 0.00 0.00 34.95 4.18
4467 4631 0.393132 GGTAAGCCAGCCTTCCACTC 60.393 60.000 0.00 0.00 34.95 3.51
4468 4632 1.133809 TGGTAAGCCAGCCTTCCACT 61.134 55.000 0.00 0.00 40.46 4.00
4469 4633 1.378762 TGGTAAGCCAGCCTTCCAC 59.621 57.895 0.00 0.00 40.46 4.02
4470 4634 3.914645 TGGTAAGCCAGCCTTCCA 58.085 55.556 0.00 0.00 40.46 3.53
4485 4649 6.113411 AGTTTATCAAAATCCTACCGAGTGG 58.887 40.000 0.00 0.00 42.84 4.00
4486 4650 7.611213 AAGTTTATCAAAATCCTACCGAGTG 57.389 36.000 0.00 0.00 0.00 3.51
4487 4651 7.985752 CCTAAGTTTATCAAAATCCTACCGAGT 59.014 37.037 0.00 0.00 0.00 4.18
4488 4652 7.041984 GCCTAAGTTTATCAAAATCCTACCGAG 60.042 40.741 0.00 0.00 0.00 4.63
4489 4653 6.764560 GCCTAAGTTTATCAAAATCCTACCGA 59.235 38.462 0.00 0.00 0.00 4.69
4490 4654 6.292703 CGCCTAAGTTTATCAAAATCCTACCG 60.293 42.308 0.00 0.00 0.00 4.02
4491 4655 6.764560 TCGCCTAAGTTTATCAAAATCCTACC 59.235 38.462 0.00 0.00 0.00 3.18
4492 4656 7.494952 ACTCGCCTAAGTTTATCAAAATCCTAC 59.505 37.037 0.00 0.00 0.00 3.18
4493 4657 7.562135 ACTCGCCTAAGTTTATCAAAATCCTA 58.438 34.615 0.00 0.00 0.00 2.94
4494 4658 6.415573 ACTCGCCTAAGTTTATCAAAATCCT 58.584 36.000 0.00 0.00 0.00 3.24
4495 4659 6.238402 GGACTCGCCTAAGTTTATCAAAATCC 60.238 42.308 0.00 0.00 0.00 3.01
4496 4660 6.716438 GGACTCGCCTAAGTTTATCAAAATC 58.284 40.000 0.00 0.00 0.00 2.17
4497 4661 6.679327 GGACTCGCCTAAGTTTATCAAAAT 57.321 37.500 0.00 0.00 0.00 1.82
4517 4681 1.731720 CTTAGCTGCAGTCCAAGGAC 58.268 55.000 16.64 11.29 44.86 3.85
4518 4682 0.036010 GCTTAGCTGCAGTCCAAGGA 60.036 55.000 16.64 0.00 0.00 3.36
4519 4683 1.028868 GGCTTAGCTGCAGTCCAAGG 61.029 60.000 16.64 2.64 34.04 3.61
4520 4684 0.035630 AGGCTTAGCTGCAGTCCAAG 60.036 55.000 16.64 15.95 34.04 3.61
4521 4685 0.036010 GAGGCTTAGCTGCAGTCCAA 60.036 55.000 16.64 6.12 34.04 3.53
4522 4686 1.599047 GAGGCTTAGCTGCAGTCCA 59.401 57.895 16.64 0.00 34.04 4.02
4523 4687 1.153269 GGAGGCTTAGCTGCAGTCC 60.153 63.158 16.64 8.57 32.79 3.85
4524 4688 1.520342 CGGAGGCTTAGCTGCAGTC 60.520 63.158 16.64 7.83 34.04 3.51
4525 4689 1.954362 CTCGGAGGCTTAGCTGCAGT 61.954 60.000 16.64 4.79 34.04 4.40
4526 4690 1.227205 CTCGGAGGCTTAGCTGCAG 60.227 63.158 10.11 10.11 34.04 4.41
4527 4691 1.984570 ACTCGGAGGCTTAGCTGCA 60.985 57.895 10.23 0.00 34.04 4.41
4528 4692 1.520342 CACTCGGAGGCTTAGCTGC 60.520 63.158 10.23 0.00 0.00 5.25
4529 4693 0.102120 CTCACTCGGAGGCTTAGCTG 59.898 60.000 10.23 0.00 40.13 4.24
4530 4694 0.033991 TCTCACTCGGAGGCTTAGCT 60.034 55.000 10.23 0.00 44.19 3.32
4531 4695 0.383949 CTCTCACTCGGAGGCTTAGC 59.616 60.000 10.23 0.00 44.19 3.09
4532 4696 1.028905 CCTCTCACTCGGAGGCTTAG 58.971 60.000 10.23 1.80 42.95 2.18
4533 4697 3.192799 CCTCTCACTCGGAGGCTTA 57.807 57.895 10.23 0.00 42.95 3.09
4534 4698 4.026300 CCTCTCACTCGGAGGCTT 57.974 61.111 10.23 0.00 42.95 4.35
4538 4702 0.817634 AGCGATCCTCTCACTCGGAG 60.818 60.000 2.83 2.83 45.49 4.63
4539 4703 0.816018 GAGCGATCCTCTCACTCGGA 60.816 60.000 0.00 0.00 37.60 4.55
4540 4704 1.652012 GAGCGATCCTCTCACTCGG 59.348 63.158 0.00 0.00 37.60 4.63
4608 4772 3.787001 CCTTCCACTCGGGGGCTC 61.787 72.222 0.00 0.00 37.22 4.70
4634 4798 6.113411 AGTTTATCAAAATCCTACCGAGTGG 58.887 40.000 0.00 0.00 42.84 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.