Multiple sequence alignment - TraesCS6B01G004600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G004600 chr6B 100.000 6009 0 0 1 6009 3567058 3573066 0.000000e+00 11097.0
1 TraesCS6B01G004600 chr6B 100.000 2228 0 0 6359 8586 3573416 3575643 0.000000e+00 4115.0
2 TraesCS6B01G004600 chr6B 98.924 2230 21 2 6359 8586 3588837 3591065 0.000000e+00 3982.0
3 TraesCS6B01G004600 chr6B 92.371 2189 131 9 2123 4282 114811 112630 0.000000e+00 3085.0
4 TraesCS6B01G004600 chr6B 89.354 2029 166 21 2287 4282 3731243 3733254 0.000000e+00 2505.0
5 TraesCS6B01G004600 chr6B 95.884 1312 37 10 4712 6009 3587484 3588792 0.000000e+00 2108.0
6 TraesCS6B01G004600 chr6B 82.631 2159 273 63 2165 4282 3724055 3726152 0.000000e+00 1816.0
7 TraesCS6B01G004600 chr6B 94.192 1188 60 6 919 2101 115982 114799 0.000000e+00 1803.0
8 TraesCS6B01G004600 chr6B 93.514 1110 63 6 919 2023 137577 136472 0.000000e+00 1642.0
9 TraesCS6B01G004600 chr6B 90.632 950 82 4 1001 1949 3722807 3723750 0.000000e+00 1254.0
10 TraesCS6B01G004600 chr6B 89.115 836 77 10 6761 7585 232755527 232756359 0.000000e+00 1027.0
11 TraesCS6B01G004600 chr6B 88.517 836 79 10 6761 7585 107874579 107875408 0.000000e+00 996.0
12 TraesCS6B01G004600 chr6B 88.517 836 79 10 6761 7585 664716406 664715577 0.000000e+00 996.0
13 TraesCS6B01G004600 chr6B 96.844 507 14 1 4288 4792 3586991 3587497 0.000000e+00 846.0
14 TraesCS6B01G004600 chr6B 82.182 550 83 12 1478 2020 3730487 3731028 7.850000e-125 459.0
15 TraesCS6B01G004600 chr6B 93.798 129 7 1 5389 5516 3571995 3571867 8.800000e-45 193.0
16 TraesCS6B01G004600 chr6B 87.578 161 17 3 3892 4051 130516 130358 5.290000e-42 183.0
17 TraesCS6B01G004600 chr6B 82.160 213 20 8 355 566 116469 116274 5.330000e-37 167.0
18 TraesCS6B01G004600 chr6B 82.160 213 20 8 355 566 138064 137869 5.330000e-37 167.0
19 TraesCS6B01G004600 chr6B 83.951 162 23 1 3712 3870 4205217 4205056 1.490000e-32 152.0
20 TraesCS6B01G004600 chr6B 100.000 32 0 0 2023 2054 136455 136424 9.310000e-05 60.2
21 TraesCS6B01G004600 chr6D 84.970 1670 205 28 2317 3969 2323976 2322336 0.000000e+00 1652.0
22 TraesCS6B01G004600 chr6D 86.449 1284 149 17 2530 3811 2294310 2293050 0.000000e+00 1384.0
23 TraesCS6B01G004600 chr6D 83.820 1508 186 33 919 2397 2325549 2324071 0.000000e+00 1380.0
24 TraesCS6B01G004600 chr6D 91.266 458 36 2 4288 4742 18957165 18957621 9.470000e-174 621.0
25 TraesCS6B01G004600 chr6D 92.083 240 19 0 5655 5894 297581806 297581567 1.070000e-88 339.0
26 TraesCS6B01G004600 chr6D 90.816 98 7 1 6584 6679 34582459 34582556 6.990000e-26 130.0
27 TraesCS6B01G004600 chr6D 86.916 107 10 3 6579 6681 382547313 382547419 5.450000e-22 117.0
28 TraesCS6B01G004600 chr6D 87.379 103 11 1 6578 6678 464266179 464266281 5.450000e-22 117.0
29 TraesCS6B01G004600 chr6D 84.211 114 14 3 6572 6682 354905718 354905830 3.280000e-19 108.0
30 TraesCS6B01G004600 chr6D 84.906 106 13 2 6584 6686 16366364 16366259 4.240000e-18 104.0
31 TraesCS6B01G004600 chr6D 88.372 86 8 1 6595 6678 178131304 178131389 1.520000e-17 102.0
32 TraesCS6B01G004600 chr6D 84.404 109 12 4 6584 6688 467773574 467773467 1.520000e-17 102.0
33 TraesCS6B01G004600 chr6D 89.873 79 6 1 6591 6667 291383442 291383364 5.480000e-17 100.0
34 TraesCS6B01G004600 chr6D 86.667 90 10 1 6581 6668 68866144 68866233 1.970000e-16 99.0
35 TraesCS6B01G004600 chr4B 93.498 1015 61 5 6574 7583 245493936 245494950 0.000000e+00 1504.0
36 TraesCS6B01G004600 chr4B 88.589 815 67 9 7587 8398 245522101 245522892 0.000000e+00 966.0
37 TraesCS6B01G004600 chr4B 94.309 492 25 3 4288 4777 253777505 253777995 0.000000e+00 750.0
38 TraesCS6B01G004600 chr4B 78.212 358 71 7 7636 7990 143100917 143100564 1.120000e-53 222.0
39 TraesCS6B01G004600 chr4B 95.161 124 5 1 5389 5511 253778082 253778205 2.450000e-45 195.0
40 TraesCS6B01G004600 chrUn 83.604 1537 198 29 2458 3969 75570959 75572466 0.000000e+00 1393.0
41 TraesCS6B01G004600 chrUn 84.478 1121 138 17 916 2019 75569573 75570674 0.000000e+00 1074.0
42 TraesCS6B01G004600 chrUn 85.277 1012 113 17 916 1910 363956861 363955869 0.000000e+00 1011.0
43 TraesCS6B01G004600 chrUn 86.203 790 96 7 2458 3242 430410685 430411466 0.000000e+00 843.0
44 TraesCS6B01G004600 chrUn 81.481 729 94 16 3261 3969 414203134 414202427 2.090000e-155 560.0
45 TraesCS6B01G004600 chrUn 88.701 177 17 3 2221 2396 75570756 75570930 6.750000e-51 213.0
46 TraesCS6B01G004600 chrUn 88.701 177 17 3 2221 2396 430410482 430410656 6.750000e-51 213.0
47 TraesCS6B01G004600 chrUn 86.667 135 11 3 15 149 129247334 129247207 8.980000e-30 143.0
48 TraesCS6B01G004600 chrUn 84.397 141 7 11 338 476 75568824 75568951 3.250000e-24 124.0
49 TraesCS6B01G004600 chrUn 85.827 127 7 8 351 476 363957599 363957483 3.250000e-24 124.0
50 TraesCS6B01G004600 chrUn 84.397 141 7 11 338 476 472862400 472862527 3.250000e-24 124.0
51 TraesCS6B01G004600 chrUn 88.421 95 9 1 6590 6682 71312947 71312853 7.040000e-21 113.0
52 TraesCS6B01G004600 chrUn 87.356 87 8 2 7500 7585 338330039 338329955 7.090000e-16 97.1
53 TraesCS6B01G004600 chr7B 88.995 836 78 10 6761 7585 625725790 625726622 0.000000e+00 1022.0
54 TraesCS6B01G004600 chr7B 92.535 576 36 5 4812 5381 467536115 467535541 0.000000e+00 819.0
55 TraesCS6B01G004600 chr7B 90.189 581 40 14 4810 5385 196385662 196386230 0.000000e+00 741.0
56 TraesCS6B01G004600 chr7B 90.311 578 32 13 4811 5381 66199303 66199863 0.000000e+00 736.0
57 TraesCS6B01G004600 chr7B 93.094 362 16 6 4810 5163 551062361 551062721 9.880000e-144 521.0
58 TraesCS6B01G004600 chr7B 89.751 361 24 10 5038 5388 614831224 614830867 4.730000e-122 449.0
59 TraesCS6B01G004600 chr7B 86.957 368 38 6 5650 6009 34204418 34204783 1.040000e-108 405.0
60 TraesCS6B01G004600 chr7B 93.085 188 12 1 6361 6548 34204963 34205149 3.050000e-69 274.0
61 TraesCS6B01G004600 chr7B 93.798 129 7 1 5389 5516 551062489 551062361 8.800000e-45 193.0
62 TraesCS6B01G004600 chr7B 93.023 43 2 1 8356 8398 54223411 54223452 2.590000e-05 62.1
63 TraesCS6B01G004600 chr2B 88.995 836 78 10 6761 7585 780824507 780823675 0.000000e+00 1022.0
64 TraesCS6B01G004600 chr2B 92.150 586 37 8 4807 5384 48289468 48288884 0.000000e+00 819.0
65 TraesCS6B01G004600 chr2B 91.525 531 29 5 4812 5326 689578400 689578930 0.000000e+00 717.0
66 TraesCS6B01G004600 chr2B 89.668 542 20 5 4845 5385 703576891 703576385 0.000000e+00 658.0
67 TraesCS6B01G004600 chr2B 92.821 195 13 1 6361 6554 15162388 15162582 1.820000e-71 281.0
68 TraesCS6B01G004600 chr2B 93.798 129 7 1 5389 5516 62761468 62761340 8.800000e-45 193.0
69 TraesCS6B01G004600 chr1B 88.982 835 81 7 6761 7585 84418278 84417445 0.000000e+00 1022.0
70 TraesCS6B01G004600 chr1B 88.503 835 84 8 6761 7585 222194064 222193232 0.000000e+00 1000.0
71 TraesCS6B01G004600 chr1B 90.725 345 26 5 5042 5381 61433067 61433410 1.020000e-123 455.0
72 TraesCS6B01G004600 chr1B 88.462 104 10 1 6577 6678 56752385 56752488 3.250000e-24 124.0
73 TraesCS6B01G004600 chr1B 86.239 109 11 3 6576 6681 359902040 359902147 1.960000e-21 115.0
74 TraesCS6B01G004600 chr5A 88.757 845 78 9 6761 7589 510987762 510986919 0.000000e+00 1018.0
75 TraesCS6B01G004600 chr5A 84.460 695 85 13 6903 7585 465138732 465138049 0.000000e+00 664.0
76 TraesCS6B01G004600 chr5A 83.238 525 56 17 5513 6009 512698957 512699477 3.650000e-123 453.0
77 TraesCS6B01G004600 chr5A 87.709 179 22 0 6361 6539 58026003 58026181 8.730000e-50 209.0
78 TraesCS6B01G004600 chr5A 85.204 196 22 1 6361 6549 163027112 163027307 2.450000e-45 195.0
79 TraesCS6B01G004600 chr5A 86.667 135 11 3 15 149 498350447 498350320 8.980000e-30 143.0
80 TraesCS6B01G004600 chr5A 86.667 135 11 3 15 149 580089855 580089728 8.980000e-30 143.0
81 TraesCS6B01G004600 chr5A 88.776 98 9 1 6584 6679 613478536 613478439 1.510000e-22 119.0
82 TraesCS6B01G004600 chr3A 88.242 825 83 10 6761 7573 10288591 10289413 0.000000e+00 974.0
83 TraesCS6B01G004600 chr3A 88.939 660 62 7 6761 7411 505062043 505061386 0.000000e+00 804.0
84 TraesCS6B01G004600 chr3A 88.579 359 32 5 5659 6009 208224776 208225133 2.210000e-115 427.0
85 TraesCS6B01G004600 chr3A 93.651 189 10 2 6361 6548 208225275 208225462 1.820000e-71 281.0
86 TraesCS6B01G004600 chr3A 89.005 191 21 0 6364 6554 718244464 718244274 4.010000e-58 237.0
87 TraesCS6B01G004600 chr3A 93.893 131 7 1 5389 5518 272767091 272767221 6.800000e-46 196.0
88 TraesCS6B01G004600 chr4A 91.045 603 25 12 4812 5386 698936338 698935737 0.000000e+00 787.0
89 TraesCS6B01G004600 chr4A 85.468 695 78 13 6903 7585 499430300 499429617 0.000000e+00 702.0
90 TraesCS6B01G004600 chr4A 89.980 509 37 10 4288 4787 510636751 510636248 0.000000e+00 645.0
91 TraesCS6B01G004600 chr4A 94.355 124 6 1 5389 5511 698936212 698936335 1.140000e-43 189.0
92 TraesCS6B01G004600 chr5B 89.637 579 30 7 4805 5382 185563497 185562948 0.000000e+00 710.0
93 TraesCS6B01G004600 chr5B 86.667 135 11 3 15 149 179600573 179600700 8.980000e-30 143.0
94 TraesCS6B01G004600 chr5B 97.143 35 1 0 8364 8398 576217177 576217143 9.310000e-05 60.2
95 TraesCS6B01G004600 chr7A 91.189 488 37 2 7102 7589 599956544 599956063 0.000000e+00 658.0
96 TraesCS6B01G004600 chr7A 90.408 490 38 6 4288 4774 127897535 127898018 3.380000e-178 636.0
97 TraesCS6B01G004600 chr7A 90.278 288 22 5 6670 6956 599956823 599956541 1.050000e-98 372.0
98 TraesCS6B01G004600 chr7A 86.667 135 11 4 15 149 66975445 66975318 8.980000e-30 143.0
99 TraesCS6B01G004600 chr7A 86.667 135 11 3 15 149 647877741 647877868 8.980000e-30 143.0
100 TraesCS6B01G004600 chr2A 95.110 409 20 0 4288 4696 524951057 524950649 0.000000e+00 645.0
101 TraesCS6B01G004600 chr2A 91.723 447 33 3 4288 4731 214448498 214448053 1.220000e-172 617.0
102 TraesCS6B01G004600 chr2A 76.923 988 172 40 908 1885 31172671 31173612 2.140000e-140 510.0
103 TraesCS6B01G004600 chr2A 84.431 334 51 1 5650 5983 248153436 248153104 2.310000e-85 327.0
104 TraesCS6B01G004600 chr2A 95.580 181 6 2 6369 6548 753009868 753009689 1.090000e-73 289.0
105 TraesCS6B01G004600 chr2A 85.340 191 28 0 6364 6554 248152895 248152705 1.890000e-46 198.0
106 TraesCS6B01G004600 chr2A 93.548 124 7 1 5389 5511 18034004 18034127 5.290000e-42 183.0
107 TraesCS6B01G004600 chr2A 86.667 135 11 3 15 149 630579851 630579724 8.980000e-30 143.0
108 TraesCS6B01G004600 chr2A 83.333 90 8 4 6797 6880 52122748 52122660 9.240000e-10 76.8
109 TraesCS6B01G004600 chr5D 91.485 458 35 2 4288 4742 545139396 545138940 2.030000e-175 627.0
110 TraesCS6B01G004600 chr5D 87.255 102 11 1 6582 6681 526139275 526139174 1.960000e-21 115.0
111 TraesCS6B01G004600 chr5D 83.594 128 14 6 6578 6700 521371574 521371699 7.040000e-21 113.0
112 TraesCS6B01G004600 chr1A 91.499 447 34 2 4288 4731 493628611 493629056 5.700000e-171 612.0
113 TraesCS6B01G004600 chr1A 88.611 360 30 7 5659 6009 450482919 450482562 2.210000e-115 427.0
114 TraesCS6B01G004600 chr1A 87.500 360 33 5 5650 6008 15374665 15375013 1.040000e-108 405.0
115 TraesCS6B01G004600 chr1A 86.667 135 11 3 15 149 29422960 29422833 8.980000e-30 143.0
116 TraesCS6B01G004600 chr1A 86.667 135 11 3 15 149 536106308 536106181 8.980000e-30 143.0
117 TraesCS6B01G004600 chr3B 92.011 363 16 8 4810 5163 107773848 107773490 1.660000e-136 497.0
118 TraesCS6B01G004600 chr3B 90.625 352 26 6 5038 5383 158206632 158206282 2.180000e-125 460.0
119 TraesCS6B01G004600 chr3B 93.701 127 7 1 5389 5514 194766934 194767060 1.140000e-43 189.0
120 TraesCS6B01G004600 chr3B 92.857 42 1 2 8358 8398 598050985 598051025 9.310000e-05 60.2
121 TraesCS6B01G004600 chr6A 89.431 369 37 2 5641 6009 62890540 62890174 1.690000e-126 464.0
122 TraesCS6B01G004600 chr6A 93.443 122 6 2 8427 8547 1430698 1430578 6.850000e-41 180.0
123 TraesCS6B01G004600 chr6A 92.683 41 2 1 7956 7995 611185328 611185288 3.350000e-04 58.4
124 TraesCS6B01G004600 chr1D 74.286 315 69 11 2629 2937 2686287 2686595 1.170000e-23 122.0
125 TraesCS6B01G004600 chr1D 85.981 107 12 2 6581 6684 354518918 354519024 2.530000e-20 111.0
126 TraesCS6B01G004600 chr1D 72.293 314 79 8 2628 2937 2484826 2485135 3.300000e-14 91.6
127 TraesCS6B01G004600 chr2D 88.119 101 10 1 6582 6680 445894982 445894882 1.510000e-22 119.0
128 TraesCS6B01G004600 chr4D 88.660 97 9 1 6584 6678 238299887 238299983 5.450000e-22 117.0
129 TraesCS6B01G004600 chr4D 87.000 100 11 1 6581 6678 118247521 118247422 2.530000e-20 111.0
130 TraesCS6B01G004600 chr4D 86.000 100 12 1 6581 6678 12354695 12354794 1.180000e-18 106.0
131 TraesCS6B01G004600 chr4D 82.500 120 16 4 6583 6700 170210464 170210348 5.480000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G004600 chr6B 3567058 3575643 8585 False 7606.000000 11097 100.000000 1 8586 2 chr6B.!!$F3 8585
1 TraesCS6B01G004600 chr6B 3586991 3591065 4074 False 2312.000000 3982 97.217333 4288 8586 3 chr6B.!!$F4 4298
2 TraesCS6B01G004600 chr6B 112630 116469 3839 True 1685.000000 3085 89.574333 355 4282 3 chr6B.!!$R5 3927
3 TraesCS6B01G004600 chr6B 3722807 3726152 3345 False 1535.000000 1816 86.631500 1001 4282 2 chr6B.!!$F5 3281
4 TraesCS6B01G004600 chr6B 3730487 3733254 2767 False 1482.000000 2505 85.768000 1478 4282 2 chr6B.!!$F6 2804
5 TraesCS6B01G004600 chr6B 232755527 232756359 832 False 1027.000000 1027 89.115000 6761 7585 1 chr6B.!!$F2 824
6 TraesCS6B01G004600 chr6B 107874579 107875408 829 False 996.000000 996 88.517000 6761 7585 1 chr6B.!!$F1 824
7 TraesCS6B01G004600 chr6B 664715577 664716406 829 True 996.000000 996 88.517000 6761 7585 1 chr6B.!!$R4 824
8 TraesCS6B01G004600 chr6B 136424 138064 1640 True 623.066667 1642 91.891333 355 2054 3 chr6B.!!$R6 1699
9 TraesCS6B01G004600 chr6D 2322336 2325549 3213 True 1516.000000 1652 84.395000 919 3969 2 chr6D.!!$R6 3050
10 TraesCS6B01G004600 chr6D 2293050 2294310 1260 True 1384.000000 1384 86.449000 2530 3811 1 chr6D.!!$R1 1281
11 TraesCS6B01G004600 chr4B 245493936 245494950 1014 False 1504.000000 1504 93.498000 6574 7583 1 chr4B.!!$F1 1009
12 TraesCS6B01G004600 chr4B 245522101 245522892 791 False 966.000000 966 88.589000 7587 8398 1 chr4B.!!$F2 811
13 TraesCS6B01G004600 chr4B 253777505 253778205 700 False 472.500000 750 94.735000 4288 5511 2 chr4B.!!$F3 1223
14 TraesCS6B01G004600 chrUn 75568824 75572466 3642 False 701.000000 1393 85.295000 338 3969 4 chrUn.!!$F2 3631
15 TraesCS6B01G004600 chrUn 363955869 363957599 1730 True 567.500000 1011 85.552000 351 1910 2 chrUn.!!$R5 1559
16 TraesCS6B01G004600 chrUn 414202427 414203134 707 True 560.000000 560 81.481000 3261 3969 1 chrUn.!!$R4 708
17 TraesCS6B01G004600 chrUn 430410482 430411466 984 False 528.000000 843 87.452000 2221 3242 2 chrUn.!!$F3 1021
18 TraesCS6B01G004600 chr7B 625725790 625726622 832 False 1022.000000 1022 88.995000 6761 7585 1 chr7B.!!$F5 824
19 TraesCS6B01G004600 chr7B 467535541 467536115 574 True 819.000000 819 92.535000 4812 5381 1 chr7B.!!$R1 569
20 TraesCS6B01G004600 chr7B 196385662 196386230 568 False 741.000000 741 90.189000 4810 5385 1 chr7B.!!$F3 575
21 TraesCS6B01G004600 chr7B 66199303 66199863 560 False 736.000000 736 90.311000 4811 5381 1 chr7B.!!$F2 570
22 TraesCS6B01G004600 chr7B 34204418 34205149 731 False 339.500000 405 90.021000 5650 6548 2 chr7B.!!$F6 898
23 TraesCS6B01G004600 chr2B 780823675 780824507 832 True 1022.000000 1022 88.995000 6761 7585 1 chr2B.!!$R4 824
24 TraesCS6B01G004600 chr2B 48288884 48289468 584 True 819.000000 819 92.150000 4807 5384 1 chr2B.!!$R1 577
25 TraesCS6B01G004600 chr2B 689578400 689578930 530 False 717.000000 717 91.525000 4812 5326 1 chr2B.!!$F2 514
26 TraesCS6B01G004600 chr2B 703576385 703576891 506 True 658.000000 658 89.668000 4845 5385 1 chr2B.!!$R3 540
27 TraesCS6B01G004600 chr1B 84417445 84418278 833 True 1022.000000 1022 88.982000 6761 7585 1 chr1B.!!$R1 824
28 TraesCS6B01G004600 chr1B 222193232 222194064 832 True 1000.000000 1000 88.503000 6761 7585 1 chr1B.!!$R2 824
29 TraesCS6B01G004600 chr5A 510986919 510987762 843 True 1018.000000 1018 88.757000 6761 7589 1 chr5A.!!$R3 828
30 TraesCS6B01G004600 chr5A 465138049 465138732 683 True 664.000000 664 84.460000 6903 7585 1 chr5A.!!$R1 682
31 TraesCS6B01G004600 chr5A 512698957 512699477 520 False 453.000000 453 83.238000 5513 6009 1 chr5A.!!$F3 496
32 TraesCS6B01G004600 chr3A 10288591 10289413 822 False 974.000000 974 88.242000 6761 7573 1 chr3A.!!$F1 812
33 TraesCS6B01G004600 chr3A 505061386 505062043 657 True 804.000000 804 88.939000 6761 7411 1 chr3A.!!$R1 650
34 TraesCS6B01G004600 chr3A 208224776 208225462 686 False 354.000000 427 91.115000 5659 6548 2 chr3A.!!$F3 889
35 TraesCS6B01G004600 chr4A 698935737 698936338 601 True 787.000000 787 91.045000 4812 5386 1 chr4A.!!$R3 574
36 TraesCS6B01G004600 chr4A 499429617 499430300 683 True 702.000000 702 85.468000 6903 7585 1 chr4A.!!$R1 682
37 TraesCS6B01G004600 chr4A 510636248 510636751 503 True 645.000000 645 89.980000 4288 4787 1 chr4A.!!$R2 499
38 TraesCS6B01G004600 chr5B 185562948 185563497 549 True 710.000000 710 89.637000 4805 5382 1 chr5B.!!$R1 577
39 TraesCS6B01G004600 chr7A 599956063 599956823 760 True 515.000000 658 90.733500 6670 7589 2 chr7A.!!$R2 919
40 TraesCS6B01G004600 chr2A 31172671 31173612 941 False 510.000000 510 76.923000 908 1885 1 chr2A.!!$F2 977
41 TraesCS6B01G004600 chr2A 248152705 248153436 731 True 262.500000 327 84.885500 5650 6554 2 chr2A.!!$R6 904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
556 568 0.111061 AATGGCCAGCTCACAACTGA 59.889 50.000 13.05 0.00 37.32 3.41 F
1317 1535 0.332632 AGCTCAAAGGGCTAATGGCA 59.667 50.000 0.00 0.00 44.01 4.92 F
1629 1853 2.296190 GGTCTCAATTGTTGTTGGACCC 59.704 50.000 5.13 0.00 40.14 4.46 F
2750 3391 2.451132 ACTCGTATTCTCGATGTTGCG 58.549 47.619 0.00 0.00 39.12 4.85 F
4285 4975 0.107703 CTGAAGGGAAGTATGCGCCA 60.108 55.000 4.18 0.00 0.00 5.69 F
4286 4976 0.546122 TGAAGGGAAGTATGCGCCAT 59.454 50.000 4.18 0.63 0.00 4.40 F
4611 5302 1.315690 CCTGCGATGCCTGATGATTT 58.684 50.000 0.00 0.00 0.00 2.17 F
5735 6656 1.106285 GATTTCCCATGTGGAGGTGC 58.894 55.000 0.00 0.00 46.24 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1629 1853 0.895530 TAGTCTTGCCAAGTCCTCCG 59.104 55.000 4.04 0.00 0.00 4.63 R
3164 3805 0.981943 AACTTACCCCTGGTTCCTCG 59.018 55.000 0.00 0.00 37.09 4.63 R
3431 4072 0.178953 ACCTCACTTTTGGCATGCCT 60.179 50.000 35.53 14.23 36.94 4.75 R
4552 5242 0.178903 CTCGGGAGGGGAATGGGATA 60.179 60.000 0.00 0.00 0.00 2.59 R
5269 6153 1.358787 TCCCGAGTCCCTACCTGTTTA 59.641 52.381 0.00 0.00 0.00 2.01 R
5601 6497 1.498576 AGAGAGGGCAGAGAGATAGCA 59.501 52.381 0.00 0.00 0.00 3.49 R
6588 7638 6.768483 TGAGACACTTATTTTGTGATGGAGA 58.232 36.000 0.00 0.00 38.65 3.71 R
7712 8793 1.337823 GCTTTACTCCTTCGTGCAGGA 60.338 52.381 4.68 4.68 41.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.863901 AAGGCCTTGTTGATAGTAGATAGAT 57.136 36.000 19.73 0.00 0.00 1.98
25 26 7.475137 AGGCCTTGTTGATAGTAGATAGATC 57.525 40.000 0.00 0.00 0.00 2.75
26 27 7.245292 AGGCCTTGTTGATAGTAGATAGATCT 58.755 38.462 0.00 0.00 40.86 2.75
27 28 8.394822 AGGCCTTGTTGATAGTAGATAGATCTA 58.605 37.037 0.00 4.57 38.32 1.98
28 29 9.026121 GGCCTTGTTGATAGTAGATAGATCTAA 57.974 37.037 6.52 0.00 40.77 2.10
35 36 8.988546 TGATAGTAGATAGATCTAATCCCTGC 57.011 38.462 6.52 5.82 40.77 4.85
36 37 8.560903 TGATAGTAGATAGATCTAATCCCTGCA 58.439 37.037 6.52 0.00 40.77 4.41
37 38 8.995027 ATAGTAGATAGATCTAATCCCTGCAG 57.005 38.462 6.78 6.78 40.77 4.41
38 39 6.799827 AGTAGATAGATCTAATCCCTGCAGT 58.200 40.000 13.81 0.00 40.77 4.40
39 40 5.999205 AGATAGATCTAATCCCTGCAGTG 57.001 43.478 13.81 0.00 34.85 3.66
40 41 2.926778 AGATCTAATCCCTGCAGTGC 57.073 50.000 13.81 8.58 0.00 4.40
41 42 2.121948 AGATCTAATCCCTGCAGTGCA 58.878 47.619 18.58 18.58 36.92 4.57
42 43 2.158842 AGATCTAATCCCTGCAGTGCAC 60.159 50.000 15.37 9.40 33.79 4.57
43 44 0.983467 TCTAATCCCTGCAGTGCACA 59.017 50.000 21.04 0.90 33.79 4.57
44 45 1.561076 TCTAATCCCTGCAGTGCACAT 59.439 47.619 21.04 3.57 33.79 3.21
45 46 2.025981 TCTAATCCCTGCAGTGCACATT 60.026 45.455 21.04 14.40 33.79 2.71
46 47 1.180029 AATCCCTGCAGTGCACATTC 58.820 50.000 21.04 7.82 33.79 2.67
47 48 0.330604 ATCCCTGCAGTGCACATTCT 59.669 50.000 21.04 0.00 33.79 2.40
48 49 0.607217 TCCCTGCAGTGCACATTCTG 60.607 55.000 21.04 9.64 33.79 3.02
49 50 0.607217 CCCTGCAGTGCACATTCTGA 60.607 55.000 21.04 0.00 33.79 3.27
50 51 1.460504 CCTGCAGTGCACATTCTGAT 58.539 50.000 21.04 0.00 33.79 2.90
51 52 1.816835 CCTGCAGTGCACATTCTGATT 59.183 47.619 21.04 0.00 33.79 2.57
52 53 2.159421 CCTGCAGTGCACATTCTGATTC 60.159 50.000 21.04 0.00 33.79 2.52
53 54 2.747989 CTGCAGTGCACATTCTGATTCT 59.252 45.455 21.04 0.00 33.79 2.40
54 55 2.486592 TGCAGTGCACATTCTGATTCTG 59.513 45.455 21.04 5.30 31.71 3.02
55 56 2.486982 GCAGTGCACATTCTGATTCTGT 59.513 45.455 21.04 0.00 34.02 3.41
56 57 3.669824 GCAGTGCACATTCTGATTCTGTG 60.670 47.826 21.04 4.53 42.44 3.66
57 58 3.749609 CAGTGCACATTCTGATTCTGTGA 59.250 43.478 21.04 3.36 42.20 3.58
58 59 4.395231 CAGTGCACATTCTGATTCTGTGAT 59.605 41.667 21.04 0.00 42.20 3.06
59 60 4.395231 AGTGCACATTCTGATTCTGTGATG 59.605 41.667 21.04 7.61 42.20 3.07
60 61 4.155462 GTGCACATTCTGATTCTGTGATGT 59.845 41.667 13.17 8.09 42.20 3.06
61 62 5.352293 GTGCACATTCTGATTCTGTGATGTA 59.648 40.000 13.17 0.00 42.20 2.29
62 63 6.037940 GTGCACATTCTGATTCTGTGATGTAT 59.962 38.462 13.17 0.00 42.20 2.29
63 64 6.600427 TGCACATTCTGATTCTGTGATGTATT 59.400 34.615 15.47 0.00 42.20 1.89
64 65 7.769970 TGCACATTCTGATTCTGTGATGTATTA 59.230 33.333 15.47 1.31 42.20 0.98
65 66 8.066595 GCACATTCTGATTCTGTGATGTATTAC 58.933 37.037 15.47 0.00 42.20 1.89
66 67 9.322773 CACATTCTGATTCTGTGATGTATTACT 57.677 33.333 8.87 0.00 42.20 2.24
70 71 7.661968 TCTGATTCTGTGATGTATTACTAGGC 58.338 38.462 0.00 0.00 0.00 3.93
71 72 7.287696 TCTGATTCTGTGATGTATTACTAGGCA 59.712 37.037 0.00 0.00 0.00 4.75
72 73 7.966812 TGATTCTGTGATGTATTACTAGGCAT 58.033 34.615 0.00 0.00 0.00 4.40
73 74 8.432013 TGATTCTGTGATGTATTACTAGGCATT 58.568 33.333 0.00 0.00 0.00 3.56
74 75 8.839310 ATTCTGTGATGTATTACTAGGCATTC 57.161 34.615 0.00 0.00 0.00 2.67
75 76 7.360113 TCTGTGATGTATTACTAGGCATTCA 57.640 36.000 0.00 0.00 0.00 2.57
76 77 7.966812 TCTGTGATGTATTACTAGGCATTCAT 58.033 34.615 0.00 0.00 0.00 2.57
77 78 9.088987 TCTGTGATGTATTACTAGGCATTCATA 57.911 33.333 0.00 0.00 0.00 2.15
78 79 9.881649 CTGTGATGTATTACTAGGCATTCATAT 57.118 33.333 0.00 0.00 0.00 1.78
79 80 9.657419 TGTGATGTATTACTAGGCATTCATATG 57.343 33.333 0.00 0.00 34.76 1.78
93 94 6.434181 CATTCATATGCAAATCGCTTCAAG 57.566 37.500 0.00 0.00 43.06 3.02
94 95 5.565592 TTCATATGCAAATCGCTTCAAGT 57.434 34.783 0.00 0.00 43.06 3.16
95 96 5.565592 TCATATGCAAATCGCTTCAAGTT 57.434 34.783 0.00 0.00 43.06 2.66
96 97 6.676237 TCATATGCAAATCGCTTCAAGTTA 57.324 33.333 0.00 0.00 43.06 2.24
97 98 6.486248 TCATATGCAAATCGCTTCAAGTTAC 58.514 36.000 0.00 0.00 43.06 2.50
98 99 4.764679 ATGCAAATCGCTTCAAGTTACA 57.235 36.364 0.00 0.00 43.06 2.41
99 100 4.560136 TGCAAATCGCTTCAAGTTACAA 57.440 36.364 0.00 0.00 43.06 2.41
100 101 4.926244 TGCAAATCGCTTCAAGTTACAAA 58.074 34.783 0.00 0.00 43.06 2.83
101 102 5.344066 TGCAAATCGCTTCAAGTTACAAAA 58.656 33.333 0.00 0.00 43.06 2.44
102 103 5.231147 TGCAAATCGCTTCAAGTTACAAAAC 59.769 36.000 0.00 0.00 43.06 2.43
103 104 5.458779 GCAAATCGCTTCAAGTTACAAAACT 59.541 36.000 0.00 0.00 42.13 2.66
104 105 6.019881 GCAAATCGCTTCAAGTTACAAAACTT 60.020 34.615 0.00 0.00 46.05 2.66
105 106 7.166804 GCAAATCGCTTCAAGTTACAAAACTTA 59.833 33.333 3.38 0.00 44.68 2.24
119 120 9.053840 GTTACAAAACTTATTAGATCCCCTAGC 57.946 37.037 0.00 0.00 32.54 3.42
120 121 7.453141 ACAAAACTTATTAGATCCCCTAGCT 57.547 36.000 0.00 0.00 0.00 3.32
121 122 8.562949 ACAAAACTTATTAGATCCCCTAGCTA 57.437 34.615 0.00 0.00 0.00 3.32
122 123 8.652290 ACAAAACTTATTAGATCCCCTAGCTAG 58.348 37.037 14.20 14.20 0.00 3.42
123 124 8.652290 CAAAACTTATTAGATCCCCTAGCTAGT 58.348 37.037 19.31 0.28 0.00 2.57
124 125 9.893975 AAAACTTATTAGATCCCCTAGCTAGTA 57.106 33.333 19.31 5.18 0.00 1.82
126 127 9.482175 AACTTATTAGATCCCCTAGCTAGTATG 57.518 37.037 19.31 7.44 0.00 2.39
127 128 8.625571 ACTTATTAGATCCCCTAGCTAGTATGT 58.374 37.037 19.31 10.51 28.30 2.29
130 131 7.825983 TTAGATCCCCTAGCTAGTATGTAGA 57.174 40.000 19.31 6.97 0.00 2.59
131 132 6.918951 AGATCCCCTAGCTAGTATGTAGAT 57.081 41.667 19.31 10.96 0.00 1.98
132 133 6.668645 AGATCCCCTAGCTAGTATGTAGATG 58.331 44.000 19.31 0.78 0.00 2.90
133 134 5.194473 TCCCCTAGCTAGTATGTAGATGG 57.806 47.826 19.31 9.54 0.00 3.51
134 135 4.856182 TCCCCTAGCTAGTATGTAGATGGA 59.144 45.833 19.31 7.75 0.00 3.41
135 136 4.951094 CCCCTAGCTAGTATGTAGATGGAC 59.049 50.000 19.31 0.00 0.00 4.02
136 137 4.951094 CCCTAGCTAGTATGTAGATGGACC 59.049 50.000 19.31 0.00 0.00 4.46
137 138 4.951094 CCTAGCTAGTATGTAGATGGACCC 59.049 50.000 19.31 0.00 0.00 4.46
138 139 4.471078 AGCTAGTATGTAGATGGACCCA 57.529 45.455 0.00 0.00 0.00 4.51
139 140 4.816126 AGCTAGTATGTAGATGGACCCAA 58.184 43.478 0.00 0.00 0.00 4.12
140 141 5.407049 AGCTAGTATGTAGATGGACCCAAT 58.593 41.667 0.00 0.00 0.00 3.16
141 142 5.482175 AGCTAGTATGTAGATGGACCCAATC 59.518 44.000 0.00 0.00 0.00 2.67
149 150 2.276740 GGACCCAATCCCTGCAGG 59.723 66.667 26.87 26.87 42.46 4.85
159 160 2.352805 CCTGCAGGGTCTGGGTTC 59.647 66.667 26.14 0.00 31.21 3.62
160 161 2.352805 CTGCAGGGTCTGGGTTCC 59.647 66.667 5.57 0.00 31.21 3.62
161 162 2.449518 TGCAGGGTCTGGGTTCCA 60.450 61.111 0.00 0.00 31.21 3.53
162 163 2.034221 GCAGGGTCTGGGTTCCAC 59.966 66.667 0.00 0.00 31.21 4.02
163 164 2.757077 CAGGGTCTGGGTTCCACC 59.243 66.667 0.00 0.00 37.60 4.61
164 165 1.847968 CAGGGTCTGGGTTCCACCT 60.848 63.158 0.00 0.00 38.64 4.00
165 166 1.072930 AGGGTCTGGGTTCCACCTT 60.073 57.895 0.00 0.00 38.64 3.50
166 167 0.701310 AGGGTCTGGGTTCCACCTTT 60.701 55.000 0.00 0.00 38.64 3.11
167 168 0.251209 GGGTCTGGGTTCCACCTTTC 60.251 60.000 0.00 0.00 38.64 2.62
168 169 0.771755 GGTCTGGGTTCCACCTTTCT 59.228 55.000 0.00 0.00 38.64 2.52
169 170 1.545651 GGTCTGGGTTCCACCTTTCTG 60.546 57.143 0.00 0.00 38.64 3.02
170 171 1.143073 GTCTGGGTTCCACCTTTCTGT 59.857 52.381 0.00 0.00 38.64 3.41
171 172 1.420138 TCTGGGTTCCACCTTTCTGTC 59.580 52.381 0.00 0.00 38.64 3.51
172 173 1.142870 CTGGGTTCCACCTTTCTGTCA 59.857 52.381 0.00 0.00 38.64 3.58
173 174 1.566703 TGGGTTCCACCTTTCTGTCAA 59.433 47.619 0.00 0.00 38.64 3.18
174 175 2.230660 GGGTTCCACCTTTCTGTCAAG 58.769 52.381 0.00 0.00 38.64 3.02
175 176 1.609072 GGTTCCACCTTTCTGTCAAGC 59.391 52.381 0.00 0.00 34.73 4.01
176 177 2.297701 GTTCCACCTTTCTGTCAAGCA 58.702 47.619 0.00 0.00 0.00 3.91
177 178 2.687935 GTTCCACCTTTCTGTCAAGCAA 59.312 45.455 0.00 0.00 0.00 3.91
178 179 2.575532 TCCACCTTTCTGTCAAGCAAG 58.424 47.619 0.00 0.00 0.00 4.01
179 180 1.000938 CCACCTTTCTGTCAAGCAAGC 60.001 52.381 0.00 0.00 0.00 4.01
180 181 0.947244 ACCTTTCTGTCAAGCAAGCG 59.053 50.000 0.00 0.00 0.00 4.68
181 182 0.947244 CCTTTCTGTCAAGCAAGCGT 59.053 50.000 0.00 0.00 0.00 5.07
182 183 1.334869 CCTTTCTGTCAAGCAAGCGTT 59.665 47.619 0.00 0.00 0.00 4.84
183 184 2.378806 CTTTCTGTCAAGCAAGCGTTG 58.621 47.619 0.00 0.00 0.00 4.10
192 193 3.419828 CAAGCGTTGCTGTCCACA 58.580 55.556 0.00 0.00 39.62 4.17
193 194 1.280746 CAAGCGTTGCTGTCCACAG 59.719 57.895 2.06 2.06 46.40 3.66
194 195 1.153168 AAGCGTTGCTGTCCACAGT 60.153 52.632 8.49 0.00 45.45 3.55
195 196 1.160329 AAGCGTTGCTGTCCACAGTC 61.160 55.000 8.49 2.08 45.45 3.51
196 197 1.887242 GCGTTGCTGTCCACAGTCA 60.887 57.895 8.49 4.50 45.45 3.41
197 198 1.835483 GCGTTGCTGTCCACAGTCAG 61.835 60.000 8.49 0.00 45.45 3.51
198 199 0.249447 CGTTGCTGTCCACAGTCAGA 60.249 55.000 8.49 0.00 45.45 3.27
199 200 1.606480 CGTTGCTGTCCACAGTCAGAT 60.606 52.381 8.49 0.00 45.45 2.90
200 201 2.498167 GTTGCTGTCCACAGTCAGATT 58.502 47.619 8.49 0.00 45.45 2.40
201 202 2.462456 TGCTGTCCACAGTCAGATTC 57.538 50.000 8.49 0.00 45.45 2.52
202 203 1.693606 TGCTGTCCACAGTCAGATTCA 59.306 47.619 8.49 0.00 45.45 2.57
203 204 2.289257 TGCTGTCCACAGTCAGATTCAG 60.289 50.000 8.49 0.00 45.45 3.02
204 205 2.289320 GCTGTCCACAGTCAGATTCAGT 60.289 50.000 8.49 0.00 45.45 3.41
205 206 3.324117 CTGTCCACAGTCAGATTCAGTG 58.676 50.000 0.00 0.00 39.09 3.66
206 207 2.965147 TGTCCACAGTCAGATTCAGTGA 59.035 45.455 0.00 0.00 32.14 3.41
207 208 3.580022 TGTCCACAGTCAGATTCAGTGAT 59.420 43.478 0.00 0.00 32.14 3.06
208 209 4.180057 GTCCACAGTCAGATTCAGTGATC 58.820 47.826 0.00 0.00 32.14 2.92
209 210 4.081752 GTCCACAGTCAGATTCAGTGATCT 60.082 45.833 0.00 0.00 36.84 2.75
210 211 5.126222 GTCCACAGTCAGATTCAGTGATCTA 59.874 44.000 0.00 0.00 34.68 1.98
211 212 5.896106 TCCACAGTCAGATTCAGTGATCTAT 59.104 40.000 0.00 0.00 34.68 1.98
212 213 7.013750 GTCCACAGTCAGATTCAGTGATCTATA 59.986 40.741 0.00 0.00 34.68 1.31
213 214 7.561356 TCCACAGTCAGATTCAGTGATCTATAA 59.439 37.037 0.00 0.00 34.68 0.98
214 215 8.200120 CCACAGTCAGATTCAGTGATCTATAAA 58.800 37.037 0.00 0.00 34.68 1.40
215 216 9.761504 CACAGTCAGATTCAGTGATCTATAAAT 57.238 33.333 0.00 0.00 34.68 1.40
216 217 9.979578 ACAGTCAGATTCAGTGATCTATAAATC 57.020 33.333 0.00 0.00 34.68 2.17
219 220 9.979578 GTCAGATTCAGTGATCTATAAATCTGT 57.020 33.333 24.43 5.25 34.68 3.41
230 231 9.904198 TGATCTATAAATCTGTTCAAATGACCA 57.096 29.630 0.00 0.00 0.00 4.02
240 241 8.870160 TCTGTTCAAATGACCAAATTTACTTG 57.130 30.769 0.00 0.00 0.00 3.16
241 242 8.690884 TCTGTTCAAATGACCAAATTTACTTGA 58.309 29.630 0.00 0.00 0.00 3.02
242 243 9.480053 CTGTTCAAATGACCAAATTTACTTGAT 57.520 29.630 0.00 0.00 0.00 2.57
243 244 9.258826 TGTTCAAATGACCAAATTTACTTGATG 57.741 29.630 0.00 0.00 0.00 3.07
244 245 9.474920 GTTCAAATGACCAAATTTACTTGATGA 57.525 29.630 0.00 0.00 0.00 2.92
246 247 9.642327 TCAAATGACCAAATTTACTTGATGATG 57.358 29.630 0.00 0.00 0.00 3.07
247 248 9.642327 CAAATGACCAAATTTACTTGATGATGA 57.358 29.630 0.00 0.00 0.00 2.92
251 252 9.123902 TGACCAAATTTACTTGATGATGATAGG 57.876 33.333 0.00 0.00 0.00 2.57
252 253 9.125026 GACCAAATTTACTTGATGATGATAGGT 57.875 33.333 0.00 0.00 0.00 3.08
261 262 8.427902 ACTTGATGATGATAGGTATAGCTTGA 57.572 34.615 10.19 0.00 0.00 3.02
262 263 8.874156 ACTTGATGATGATAGGTATAGCTTGAA 58.126 33.333 10.19 0.00 0.00 2.69
263 264 9.716531 CTTGATGATGATAGGTATAGCTTGAAA 57.283 33.333 10.19 0.00 0.00 2.69
264 265 9.716531 TTGATGATGATAGGTATAGCTTGAAAG 57.283 33.333 10.19 0.00 0.00 2.62
265 266 9.093458 TGATGATGATAGGTATAGCTTGAAAGA 57.907 33.333 10.19 0.00 0.00 2.52
266 267 9.585099 GATGATGATAGGTATAGCTTGAAAGAG 57.415 37.037 10.19 0.00 0.00 2.85
267 268 8.712228 TGATGATAGGTATAGCTTGAAAGAGA 57.288 34.615 10.19 0.00 0.00 3.10
268 269 8.801299 TGATGATAGGTATAGCTTGAAAGAGAG 58.199 37.037 10.19 0.00 0.00 3.20
269 270 6.987386 TGATAGGTATAGCTTGAAAGAGAGC 58.013 40.000 10.19 0.00 39.17 4.09
270 271 6.551227 TGATAGGTATAGCTTGAAAGAGAGCA 59.449 38.462 10.19 0.00 41.31 4.26
271 272 5.275067 AGGTATAGCTTGAAAGAGAGCAG 57.725 43.478 0.00 0.00 41.31 4.24
272 273 4.959210 AGGTATAGCTTGAAAGAGAGCAGA 59.041 41.667 0.00 0.00 41.31 4.26
273 274 5.602145 AGGTATAGCTTGAAAGAGAGCAGAT 59.398 40.000 0.00 0.00 41.31 2.90
274 275 5.925969 GGTATAGCTTGAAAGAGAGCAGATC 59.074 44.000 0.00 0.00 41.31 2.75
275 276 3.264998 AGCTTGAAAGAGAGCAGATCC 57.735 47.619 0.00 0.00 41.31 3.36
276 277 2.570752 AGCTTGAAAGAGAGCAGATCCA 59.429 45.455 0.00 0.00 41.31 3.41
277 278 3.008813 AGCTTGAAAGAGAGCAGATCCAA 59.991 43.478 0.00 0.00 41.31 3.53
278 279 3.755378 GCTTGAAAGAGAGCAGATCCAAA 59.245 43.478 0.00 0.00 38.73 3.28
279 280 4.398673 GCTTGAAAGAGAGCAGATCCAAAT 59.601 41.667 0.00 0.00 38.73 2.32
280 281 5.587844 GCTTGAAAGAGAGCAGATCCAAATA 59.412 40.000 0.00 0.00 38.73 1.40
281 282 6.458070 GCTTGAAAGAGAGCAGATCCAAATAC 60.458 42.308 0.00 0.00 38.73 1.89
282 283 6.053632 TGAAAGAGAGCAGATCCAAATACA 57.946 37.500 0.00 0.00 0.00 2.29
283 284 6.656902 TGAAAGAGAGCAGATCCAAATACAT 58.343 36.000 0.00 0.00 0.00 2.29
284 285 7.795047 TGAAAGAGAGCAGATCCAAATACATA 58.205 34.615 0.00 0.00 0.00 2.29
285 286 7.930325 TGAAAGAGAGCAGATCCAAATACATAG 59.070 37.037 0.00 0.00 0.00 2.23
286 287 7.609097 AAGAGAGCAGATCCAAATACATAGA 57.391 36.000 0.00 0.00 0.00 1.98
287 288 6.991938 AGAGAGCAGATCCAAATACATAGAC 58.008 40.000 0.00 0.00 0.00 2.59
288 289 6.552725 AGAGAGCAGATCCAAATACATAGACA 59.447 38.462 0.00 0.00 0.00 3.41
289 290 7.235193 AGAGAGCAGATCCAAATACATAGACAT 59.765 37.037 0.00 0.00 0.00 3.06
290 291 7.160049 AGAGCAGATCCAAATACATAGACATG 58.840 38.462 0.00 0.00 38.21 3.21
310 311 9.973450 AGACATGTAGTATGTATAGCTTCAAAG 57.027 33.333 0.00 0.00 31.52 2.77
311 312 9.967346 GACATGTAGTATGTATAGCTTCAAAGA 57.033 33.333 0.00 0.00 31.52 2.52
318 319 9.944376 AGTATGTATAGCTTCAAAGAAACTCAA 57.056 29.630 0.00 0.00 0.00 3.02
321 322 8.311650 TGTATAGCTTCAAAGAAACTCAAGAC 57.688 34.615 0.00 0.00 0.00 3.01
322 323 7.931407 TGTATAGCTTCAAAGAAACTCAAGACA 59.069 33.333 0.00 0.00 0.00 3.41
323 324 7.992754 ATAGCTTCAAAGAAACTCAAGACAT 57.007 32.000 0.00 0.00 0.00 3.06
325 326 7.195839 AGCTTCAAAGAAACTCAAGACATAC 57.804 36.000 0.00 0.00 0.00 2.39
326 327 6.767902 AGCTTCAAAGAAACTCAAGACATACA 59.232 34.615 0.00 0.00 0.00 2.29
327 328 7.041508 AGCTTCAAAGAAACTCAAGACATACAG 60.042 37.037 0.00 0.00 0.00 2.74
328 329 7.496529 TTCAAAGAAACTCAAGACATACAGG 57.503 36.000 0.00 0.00 0.00 4.00
329 330 6.591935 TCAAAGAAACTCAAGACATACAGGT 58.408 36.000 0.00 0.00 0.00 4.00
330 331 7.054124 TCAAAGAAACTCAAGACATACAGGTT 58.946 34.615 0.00 0.00 0.00 3.50
331 332 8.208224 TCAAAGAAACTCAAGACATACAGGTTA 58.792 33.333 0.00 0.00 0.00 2.85
332 333 9.003658 CAAAGAAACTCAAGACATACAGGTTAT 57.996 33.333 0.00 0.00 0.00 1.89
333 334 8.553459 AAGAAACTCAAGACATACAGGTTATG 57.447 34.615 0.00 0.00 0.00 1.90
334 335 7.680730 AGAAACTCAAGACATACAGGTTATGT 58.319 34.615 0.00 0.00 46.45 2.29
348 349 6.947464 ACAGGTTATGTATACATATGGAGGC 58.053 40.000 23.01 11.03 41.60 4.70
349 350 6.500400 ACAGGTTATGTATACATATGGAGGCA 59.500 38.462 23.01 6.72 41.60 4.75
465 466 7.430441 CCTAAAATACTAGACTCTTCAGGAGC 58.570 42.308 0.00 0.00 45.48 4.70
476 477 2.760650 TCTTCAGGAGCGAGCAGAATAA 59.239 45.455 0.00 0.00 0.00 1.40
477 478 2.586258 TCAGGAGCGAGCAGAATAAC 57.414 50.000 0.00 0.00 0.00 1.89
478 479 1.202302 TCAGGAGCGAGCAGAATAACG 60.202 52.381 0.00 0.00 0.00 3.18
502 513 9.723601 ACGAAGTTGTAATAGGTTAAACCATTA 57.276 29.630 0.00 0.00 37.78 1.90
530 542 6.319405 TCACATATATCAGTGCAAGCAAACAT 59.681 34.615 0.00 0.00 35.76 2.71
538 550 4.983538 CAGTGCAAGCAAACATATGAACAA 59.016 37.500 10.38 0.00 0.00 2.83
553 565 0.675633 AACAATGGCCAGCTCACAAC 59.324 50.000 13.05 0.00 0.00 3.32
555 567 0.242825 CAATGGCCAGCTCACAACTG 59.757 55.000 13.05 0.00 34.82 3.16
556 568 0.111061 AATGGCCAGCTCACAACTGA 59.889 50.000 13.05 0.00 37.32 3.41
566 578 4.023792 CAGCTCACAACTGAAATGCTACAA 60.024 41.667 0.00 0.00 37.32 2.41
568 580 5.091431 GCTCACAACTGAAATGCTACAATC 58.909 41.667 0.00 0.00 0.00 2.67
569 581 5.335113 GCTCACAACTGAAATGCTACAATCA 60.335 40.000 0.00 0.00 0.00 2.57
570 582 6.000891 TCACAACTGAAATGCTACAATCAC 57.999 37.500 0.00 0.00 0.00 3.06
571 583 5.048782 TCACAACTGAAATGCTACAATCACC 60.049 40.000 0.00 0.00 0.00 4.02
572 584 4.826733 ACAACTGAAATGCTACAATCACCA 59.173 37.500 0.00 0.00 0.00 4.17
575 623 4.142315 ACTGAAATGCTACAATCACCATGC 60.142 41.667 0.00 0.00 0.00 4.06
581 629 7.764141 AATGCTACAATCACCATGCATATAA 57.236 32.000 0.00 0.00 39.76 0.98
589 637 8.698210 ACAATCACCATGCATATAAAGACATTT 58.302 29.630 0.00 0.00 0.00 2.32
595 643 6.458210 CATGCATATAAAGACATTTTCCCCC 58.542 40.000 0.00 0.00 0.00 5.40
596 644 5.776358 TGCATATAAAGACATTTTCCCCCT 58.224 37.500 0.00 0.00 0.00 4.79
598 646 6.671779 TGCATATAAAGACATTTTCCCCCTTT 59.328 34.615 0.00 0.00 0.00 3.11
599 647 6.986231 GCATATAAAGACATTTTCCCCCTTTG 59.014 38.462 0.00 0.00 0.00 2.77
600 648 7.364673 GCATATAAAGACATTTTCCCCCTTTGT 60.365 37.037 0.00 0.00 0.00 2.83
601 649 4.687901 AAAGACATTTTCCCCCTTTGTG 57.312 40.909 0.00 0.00 0.00 3.33
603 651 1.970640 GACATTTTCCCCCTTTGTGCT 59.029 47.619 0.00 0.00 0.00 4.40
608 656 1.408969 TTCCCCCTTTGTGCTGAAAC 58.591 50.000 0.00 0.00 0.00 2.78
626 674 4.158949 TGAAACTGCTGCATATGCTGAAAT 59.841 37.500 31.65 14.16 41.71 2.17
627 675 5.357596 TGAAACTGCTGCATATGCTGAAATA 59.642 36.000 31.65 16.15 41.71 1.40
643 691 8.075593 TGCTGAAATAATGAAAAGCAGAAAAC 57.924 30.769 0.00 0.00 35.84 2.43
644 692 7.710044 TGCTGAAATAATGAAAAGCAGAAAACA 59.290 29.630 0.00 0.00 35.84 2.83
652 700 6.843069 TGAAAAGCAGAAAACAAATAAGCC 57.157 33.333 0.00 0.00 0.00 4.35
653 701 6.581712 TGAAAAGCAGAAAACAAATAAGCCT 58.418 32.000 0.00 0.00 0.00 4.58
654 702 6.701400 TGAAAAGCAGAAAACAAATAAGCCTC 59.299 34.615 0.00 0.00 0.00 4.70
655 703 5.789643 AAGCAGAAAACAAATAAGCCTCA 57.210 34.783 0.00 0.00 0.00 3.86
657 705 4.219288 AGCAGAAAACAAATAAGCCTCAGG 59.781 41.667 0.00 0.00 0.00 3.86
660 708 6.623767 GCAGAAAACAAATAAGCCTCAGGTAG 60.624 42.308 0.00 0.00 0.00 3.18
667 715 7.220030 ACAAATAAGCCTCAGGTAGACATATG 58.780 38.462 0.00 0.00 0.00 1.78
670 718 3.235200 AGCCTCAGGTAGACATATGTCC 58.765 50.000 28.26 16.53 45.85 4.02
671 719 3.116939 AGCCTCAGGTAGACATATGTCCT 60.117 47.826 28.26 18.39 45.85 3.85
675 723 6.071984 CCTCAGGTAGACATATGTCCTACTT 58.928 44.000 28.26 21.53 45.85 2.24
698 746 9.028284 ACTTTATTTCAGATGATCCACAACATT 57.972 29.630 0.00 0.00 0.00 2.71
699 747 9.512435 CTTTATTTCAGATGATCCACAACATTC 57.488 33.333 0.00 0.00 0.00 2.67
701 749 7.713734 ATTTCAGATGATCCACAACATTCTT 57.286 32.000 0.00 0.00 0.00 2.52
702 750 6.748333 TTCAGATGATCCACAACATTCTTC 57.252 37.500 0.00 0.00 0.00 2.87
703 751 5.807909 TCAGATGATCCACAACATTCTTCA 58.192 37.500 0.00 0.00 0.00 3.02
705 753 4.639310 AGATGATCCACAACATTCTTCAGC 59.361 41.667 0.00 0.00 0.00 4.26
706 754 4.025040 TGATCCACAACATTCTTCAGCT 57.975 40.909 0.00 0.00 0.00 4.24
708 756 5.559770 TGATCCACAACATTCTTCAGCTAA 58.440 37.500 0.00 0.00 0.00 3.09
709 757 6.182627 TGATCCACAACATTCTTCAGCTAAT 58.817 36.000 0.00 0.00 0.00 1.73
713 761 4.946157 CACAACATTCTTCAGCTAATCCCT 59.054 41.667 0.00 0.00 0.00 4.20
716 764 6.599638 ACAACATTCTTCAGCTAATCCCTAAC 59.400 38.462 0.00 0.00 0.00 2.34
729 777 7.175119 AGCTAATCCCTAACTCTCAAACAAAAC 59.825 37.037 0.00 0.00 0.00 2.43
745 793 4.579869 ACAAAACTAGGCATACAGTCCAG 58.420 43.478 0.00 0.00 0.00 3.86
746 794 4.041691 ACAAAACTAGGCATACAGTCCAGT 59.958 41.667 0.00 0.00 0.00 4.00
747 795 5.247564 ACAAAACTAGGCATACAGTCCAGTA 59.752 40.000 0.00 0.00 0.00 2.74
749 797 7.125204 ACAAAACTAGGCATACAGTCCAGTATA 59.875 37.037 0.00 0.00 33.12 1.47
750 798 7.857404 AAACTAGGCATACAGTCCAGTATAT 57.143 36.000 0.00 0.00 33.12 0.86
757 872 9.769677 AGGCATACAGTCCAGTATATATAAGAA 57.230 33.333 0.00 0.00 33.12 2.52
791 906 5.809051 GGAACCGACGAATCTATACTGTTTT 59.191 40.000 0.00 0.00 0.00 2.43
794 909 7.325660 ACCGACGAATCTATACTGTTTTAGA 57.674 36.000 0.00 3.57 0.00 2.10
795 910 7.938715 ACCGACGAATCTATACTGTTTTAGAT 58.061 34.615 0.00 6.98 36.87 1.98
815 974 9.740239 TTTAGATGGTACTATTTACATGACGTC 57.260 33.333 9.11 9.11 0.00 4.34
816 975 6.746120 AGATGGTACTATTTACATGACGTCC 58.254 40.000 14.12 0.00 0.00 4.79
841 1001 9.097257 CCTTGTTTTGTGTGATTTAACTTTGAT 57.903 29.630 0.00 0.00 0.00 2.57
844 1004 9.299963 TGTTTTGTGTGATTTAACTTTGATCAG 57.700 29.630 0.00 0.00 31.01 2.90
893 1053 4.025858 GAGCCAGGCCAGAGCACA 62.026 66.667 8.22 0.00 42.56 4.57
894 1054 3.557903 GAGCCAGGCCAGAGCACAA 62.558 63.158 8.22 0.00 42.56 3.33
895 1055 2.362120 GCCAGGCCAGAGCACAAT 60.362 61.111 5.01 0.00 42.56 2.71
897 1057 0.680921 GCCAGGCCAGAGCACAATTA 60.681 55.000 5.01 0.00 42.56 1.40
898 1058 1.098050 CCAGGCCAGAGCACAATTAC 58.902 55.000 5.01 0.00 42.56 1.89
901 1061 2.821969 CAGGCCAGAGCACAATTACTTT 59.178 45.455 5.01 0.00 42.56 2.66
902 1062 3.256631 CAGGCCAGAGCACAATTACTTTT 59.743 43.478 5.01 0.00 42.56 2.27
903 1063 3.256631 AGGCCAGAGCACAATTACTTTTG 59.743 43.478 5.01 0.00 42.56 2.44
904 1064 3.255642 GGCCAGAGCACAATTACTTTTGA 59.744 43.478 0.00 0.00 42.56 2.69
906 1066 5.473039 GCCAGAGCACAATTACTTTTGATT 58.527 37.500 0.00 0.00 39.53 2.57
934 1148 6.373005 TCATGTCTTCTAACTTCCAATCCA 57.627 37.500 0.00 0.00 0.00 3.41
938 1152 6.173339 TGTCTTCTAACTTCCAATCCATGTC 58.827 40.000 0.00 0.00 0.00 3.06
943 1157 5.939883 TCTAACTTCCAATCCATGTCTGTTG 59.060 40.000 0.00 0.00 0.00 3.33
1038 1256 2.286732 ATGGGAAGCCTGCTCCCT 60.287 61.111 20.21 9.07 43.89 4.20
1080 1298 1.271379 GGGGAGTACAAGCTGCAGAAA 60.271 52.381 20.43 0.00 0.00 2.52
1282 1500 3.244146 CGAGGGATCTGAATCTGATGCTT 60.244 47.826 17.84 12.42 32.62 3.91
1317 1535 0.332632 AGCTCAAAGGGCTAATGGCA 59.667 50.000 0.00 0.00 44.01 4.92
1618 1842 6.495706 CACATGATGAAGATGGTCTCAATTG 58.504 40.000 0.00 0.00 0.00 2.32
1629 1853 2.296190 GGTCTCAATTGTTGTTGGACCC 59.704 50.000 5.13 0.00 40.14 4.46
2085 2529 5.499004 TTACTTCTTATCAGCAAGGTGGT 57.501 39.130 0.00 0.00 0.00 4.16
2101 2545 2.756760 GGTGGTGCATCTCAATGTCATT 59.243 45.455 0.00 0.00 35.18 2.57
2102 2546 3.181493 GGTGGTGCATCTCAATGTCATTC 60.181 47.826 0.00 0.00 35.18 2.67
2104 2548 3.692593 TGGTGCATCTCAATGTCATTCAG 59.307 43.478 0.00 0.00 35.18 3.02
2105 2549 3.488721 GGTGCATCTCAATGTCATTCAGC 60.489 47.826 0.00 0.00 35.18 4.26
2106 2550 3.128068 GTGCATCTCAATGTCATTCAGCA 59.872 43.478 0.00 0.00 35.18 4.41
2107 2551 3.951680 TGCATCTCAATGTCATTCAGCAT 59.048 39.130 0.00 0.00 35.18 3.79
2108 2552 4.202010 TGCATCTCAATGTCATTCAGCATG 60.202 41.667 0.00 0.71 35.18 4.06
2109 2553 4.202020 GCATCTCAATGTCATTCAGCATGT 60.202 41.667 0.00 0.00 34.43 3.21
2110 2554 5.678871 GCATCTCAATGTCATTCAGCATGTT 60.679 40.000 0.00 0.00 34.43 2.71
2111 2555 5.556355 TCTCAATGTCATTCAGCATGTTC 57.444 39.130 0.00 0.00 37.40 3.18
2112 2556 4.397103 TCTCAATGTCATTCAGCATGTTCC 59.603 41.667 0.00 0.00 37.40 3.62
2113 2557 4.338012 TCAATGTCATTCAGCATGTTCCT 58.662 39.130 0.00 0.00 37.40 3.36
2114 2558 4.397103 TCAATGTCATTCAGCATGTTCCTC 59.603 41.667 0.00 0.00 37.40 3.71
2115 2559 3.421919 TGTCATTCAGCATGTTCCTCA 57.578 42.857 0.00 0.00 37.40 3.86
2116 2560 3.753815 TGTCATTCAGCATGTTCCTCAA 58.246 40.909 0.00 0.00 37.40 3.02
2117 2561 3.503363 TGTCATTCAGCATGTTCCTCAAC 59.497 43.478 0.00 0.00 37.40 3.18
2118 2562 3.503363 GTCATTCAGCATGTTCCTCAACA 59.497 43.478 0.00 0.00 46.71 3.33
2130 2574 6.075762 TGTTCCTCAACATGAATCACAAAG 57.924 37.500 0.00 0.00 37.61 2.77
2131 2575 5.593909 TGTTCCTCAACATGAATCACAAAGT 59.406 36.000 0.00 0.00 37.61 2.66
2132 2576 6.096705 TGTTCCTCAACATGAATCACAAAGTT 59.903 34.615 0.00 0.00 37.61 2.66
2133 2577 6.317789 TCCTCAACATGAATCACAAAGTTC 57.682 37.500 0.00 0.00 31.71 3.01
2134 2578 5.827267 TCCTCAACATGAATCACAAAGTTCA 59.173 36.000 0.00 0.00 38.57 3.18
2135 2579 6.491062 TCCTCAACATGAATCACAAAGTTCAT 59.509 34.615 0.00 0.00 43.75 2.57
2136 2580 7.665145 TCCTCAACATGAATCACAAAGTTCATA 59.335 33.333 0.00 0.00 41.70 2.15
2137 2581 8.298854 CCTCAACATGAATCACAAAGTTCATAA 58.701 33.333 0.00 0.00 41.70 1.90
2138 2582 9.681692 CTCAACATGAATCACAAAGTTCATAAA 57.318 29.630 0.00 0.00 41.70 1.40
2167 2611 6.271488 TGAATCCAATGAATCAACCAGTTC 57.729 37.500 0.00 0.00 27.44 3.01
2227 2683 5.366460 AGAGCCTATTCATGTTCTGATGTG 58.634 41.667 0.00 0.00 32.72 3.21
2276 2735 8.500753 ACATGTTTTCCAGCTTTAATATCGTA 57.499 30.769 0.00 0.00 0.00 3.43
2362 2823 7.453393 TGAGTTCTAGTCAATCATTCAAACCT 58.547 34.615 0.00 0.00 0.00 3.50
2630 3270 7.186570 TCTTCTGTTGTCATTGATGGATAGA 57.813 36.000 0.00 0.00 0.00 1.98
2750 3391 2.451132 ACTCGTATTCTCGATGTTGCG 58.549 47.619 0.00 0.00 39.12 4.85
2898 3539 6.016276 AGACAAAATTTTACAGAAGTGCGGAT 60.016 34.615 2.44 0.00 0.00 4.18
2973 3614 5.914033 TGGAGGATTGGTCTAAAGTATTCG 58.086 41.667 0.00 0.00 0.00 3.34
2978 3619 6.380274 AGGATTGGTCTAAAGTATTCGACTCA 59.620 38.462 0.00 0.00 37.44 3.41
3074 3715 7.689446 TGATCTACCTTATTATCTGAGGTCG 57.311 40.000 0.00 0.00 39.61 4.79
3123 3764 7.337942 ACCCAGAAGACTATTTGATCATGAAAC 59.662 37.037 0.00 0.00 0.00 2.78
3375 4016 4.859798 GTGACGAGAAGAACATACCTTCAG 59.140 45.833 0.00 0.00 41.73 3.02
3537 4178 5.447279 CGTGTTTTAGATATGGAACTGTGCC 60.447 44.000 0.00 0.00 0.00 5.01
3546 4187 0.310854 GGAACTGTGCCGTTTTGAGG 59.689 55.000 0.00 0.00 0.00 3.86
3603 4244 5.721960 AGGTTACCTCAGTTGAGATACATGT 59.278 40.000 10.64 2.69 44.74 3.21
3611 4252 6.653020 TCAGTTGAGATACATGTGCCTAAAT 58.347 36.000 9.11 0.00 0.00 1.40
3613 4254 6.539826 CAGTTGAGATACATGTGCCTAAATGA 59.460 38.462 9.11 0.00 0.00 2.57
3616 4257 6.051074 TGAGATACATGTGCCTAAATGACAG 58.949 40.000 9.11 0.00 0.00 3.51
3680 4321 0.250038 TGCAGACACTGGACTTGAGC 60.250 55.000 0.00 0.00 31.21 4.26
3748 4399 1.563435 CTCAAGTGTCTGCGTGCTGG 61.563 60.000 0.00 0.00 0.00 4.85
3875 4532 3.638627 TCAGAAAGCTGACAGAGTTGAGA 59.361 43.478 6.65 0.00 45.88 3.27
3932 4598 6.855836 TGAGTGCTGGATGAAATATTTTGTC 58.144 36.000 1.43 4.01 0.00 3.18
3969 4635 3.008594 TCTGCGGAAAATCCAAGTCCTAA 59.991 43.478 0.00 0.00 35.91 2.69
3970 4636 3.756434 CTGCGGAAAATCCAAGTCCTAAA 59.244 43.478 0.00 0.00 35.91 1.85
3999 4665 0.755686 TTTCCCCATGCAACCAACAC 59.244 50.000 0.00 0.00 0.00 3.32
4066 4732 1.788886 CCGTGATCTGTGCATACATCG 59.211 52.381 0.00 0.00 35.97 3.84
4067 4733 1.190984 CGTGATCTGTGCATACATCGC 59.809 52.381 2.79 2.79 35.97 4.58
4104 4794 2.038863 TCCAAACCTCTCCAGCCTAA 57.961 50.000 0.00 0.00 0.00 2.69
4105 4795 1.909302 TCCAAACCTCTCCAGCCTAAG 59.091 52.381 0.00 0.00 0.00 2.18
4171 4861 3.307480 GGGAGTTTGCCAGAGCTTACTTA 60.307 47.826 0.00 0.00 40.80 2.24
4175 4865 3.334583 TTGCCAGAGCTTACTTACCTG 57.665 47.619 0.00 0.00 40.80 4.00
4176 4866 2.536066 TGCCAGAGCTTACTTACCTGA 58.464 47.619 0.00 0.00 40.80 3.86
4178 4868 3.118629 TGCCAGAGCTTACTTACCTGATG 60.119 47.826 0.00 0.00 40.80 3.07
4182 4872 3.452627 AGAGCTTACTTACCTGATGTGGG 59.547 47.826 0.00 0.00 0.00 4.61
4185 4875 3.055385 GCTTACTTACCTGATGTGGGACA 60.055 47.826 0.00 0.00 0.00 4.02
4214 4904 1.077429 GGGCATGGAGTTCCCTGAC 60.077 63.158 7.52 4.37 38.74 3.51
4238 4928 1.073923 GCTTTCCCCAAGTTGAGGAGA 59.926 52.381 6.20 1.28 34.56 3.71
4248 4938 0.326264 GTTGAGGAGATGCAGGGTGT 59.674 55.000 0.00 0.00 0.00 4.16
4282 4972 2.678336 GGTTTCTGAAGGGAAGTATGCG 59.322 50.000 0.00 0.00 0.00 4.73
4283 4973 2.024176 TTCTGAAGGGAAGTATGCGC 57.976 50.000 0.00 0.00 0.00 6.09
4284 4974 0.178068 TCTGAAGGGAAGTATGCGCC 59.822 55.000 4.18 0.00 0.00 6.53
4285 4975 0.107703 CTGAAGGGAAGTATGCGCCA 60.108 55.000 4.18 0.00 0.00 5.69
4286 4976 0.546122 TGAAGGGAAGTATGCGCCAT 59.454 50.000 4.18 0.63 0.00 4.40
4342 5032 2.194056 CGCCTCCCTCAATGGCAT 59.806 61.111 0.00 0.00 46.39 4.40
4552 5242 2.158813 ACGTTGTGGTTGAGATCCAAGT 60.159 45.455 0.00 0.00 36.68 3.16
4611 5302 1.315690 CCTGCGATGCCTGATGATTT 58.684 50.000 0.00 0.00 0.00 2.17
4788 5584 4.408821 GGCAGGTGTGATGCGGGA 62.409 66.667 0.00 0.00 44.80 5.14
4965 5761 2.422093 GGGAGGAGCTTATTGGGACTTG 60.422 54.545 0.00 0.00 0.00 3.16
5223 6107 2.279073 CGGACAGGCCCTCTCCTA 59.721 66.667 3.37 0.00 33.95 2.94
5377 6261 7.159372 GTCCTAGGACTTATGAAACAAACAGA 58.841 38.462 31.12 0.00 41.57 3.41
5451 6346 4.513406 AGTCCCTTGTGTTTGGTTTAGA 57.487 40.909 0.00 0.00 0.00 2.10
5547 6443 4.566070 CCCATCCAATTTTTCATGCCACTT 60.566 41.667 0.00 0.00 0.00 3.16
5735 6656 1.106285 GATTTCCCATGTGGAGGTGC 58.894 55.000 0.00 0.00 46.24 5.01
5791 6712 2.222640 CGACGACACTTTTTGTTCGTGT 60.223 45.455 0.00 0.00 43.89 4.49
5932 6861 1.141053 GCCCTAGTGGTTCGGAATGAT 59.859 52.381 0.00 0.00 36.04 2.45
6588 7638 7.558444 CCATAGAGGTTGACTAAGAACTACTCT 59.442 40.741 0.00 0.00 35.13 3.24
7405 8484 0.469070 CCTGCATCCAGAGAGGGAAG 59.531 60.000 0.00 0.00 41.77 3.46
7520 8600 6.033831 GCATTTGATTGTTTCTTCATGTACCG 59.966 38.462 0.00 0.00 0.00 4.02
7537 8618 8.394877 TCATGTACCGCAATATTTTAGTTTCAG 58.605 33.333 0.00 0.00 0.00 3.02
7623 8704 4.624364 CAGGACTGCACGGTGCCA 62.624 66.667 28.57 16.11 44.23 4.92
7712 8793 3.322466 CCTCTCCGGCCACCAACT 61.322 66.667 2.24 0.00 0.00 3.16
7737 8818 0.249398 ACGAAGGAGTAAAGCCGCAT 59.751 50.000 0.00 0.00 0.00 4.73
7827 8908 7.596995 TCCGTTTTATCTTGGCTTTTTATGTTG 59.403 33.333 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.415008 GCAGGGATTAGATCTATCTACTATCAA 57.585 37.037 2.58 0.00 39.00 2.57
10 11 8.560903 TGCAGGGATTAGATCTATCTACTATCA 58.439 37.037 2.58 0.73 39.00 2.15
11 12 8.988546 TGCAGGGATTAGATCTATCTACTATC 57.011 38.462 2.58 2.51 39.00 2.08
12 13 8.565239 ACTGCAGGGATTAGATCTATCTACTAT 58.435 37.037 19.93 0.00 39.00 2.12
13 14 7.831690 CACTGCAGGGATTAGATCTATCTACTA 59.168 40.741 19.93 0.00 39.00 1.82
14 15 6.663093 CACTGCAGGGATTAGATCTATCTACT 59.337 42.308 19.93 0.00 39.00 2.57
15 16 6.627065 GCACTGCAGGGATTAGATCTATCTAC 60.627 46.154 23.23 0.00 39.00 2.59
16 17 5.420421 GCACTGCAGGGATTAGATCTATCTA 59.580 44.000 23.23 0.00 38.32 1.98
17 18 4.222588 GCACTGCAGGGATTAGATCTATCT 59.777 45.833 23.23 0.00 40.86 1.98
18 19 4.020751 TGCACTGCAGGGATTAGATCTATC 60.021 45.833 23.23 0.00 33.32 2.08
19 20 3.906218 TGCACTGCAGGGATTAGATCTAT 59.094 43.478 23.23 0.00 33.32 1.98
20 21 3.070159 GTGCACTGCAGGGATTAGATCTA 59.930 47.826 23.23 0.00 40.08 1.98
21 22 2.121948 TGCACTGCAGGGATTAGATCT 58.878 47.619 23.23 0.00 33.32 2.75
22 23 2.216898 GTGCACTGCAGGGATTAGATC 58.783 52.381 23.23 0.00 40.08 2.75
23 24 1.561076 TGTGCACTGCAGGGATTAGAT 59.439 47.619 23.23 0.00 40.08 1.98
24 25 0.983467 TGTGCACTGCAGGGATTAGA 59.017 50.000 23.23 0.00 40.08 2.10
25 26 2.048444 ATGTGCACTGCAGGGATTAG 57.952 50.000 23.23 2.07 40.08 1.73
26 27 2.025981 AGAATGTGCACTGCAGGGATTA 60.026 45.455 23.23 4.30 40.08 1.75
27 28 1.180029 GAATGTGCACTGCAGGGATT 58.820 50.000 23.23 10.97 40.08 3.01
28 29 0.330604 AGAATGTGCACTGCAGGGAT 59.669 50.000 23.23 0.32 40.08 3.85
29 30 0.607217 CAGAATGTGCACTGCAGGGA 60.607 55.000 23.23 6.19 40.08 4.20
30 31 0.607217 TCAGAATGTGCACTGCAGGG 60.607 55.000 19.93 16.72 40.08 4.45
31 32 1.460504 ATCAGAATGTGCACTGCAGG 58.539 50.000 19.93 8.27 40.08 4.85
32 33 2.747989 AGAATCAGAATGTGCACTGCAG 59.252 45.455 19.41 13.48 40.08 4.41
33 34 2.486592 CAGAATCAGAATGTGCACTGCA 59.513 45.455 19.41 0.00 37.40 4.41
34 35 2.486982 ACAGAATCAGAATGTGCACTGC 59.513 45.455 19.41 7.22 37.40 4.40
35 36 3.749609 TCACAGAATCAGAATGTGCACTG 59.250 43.478 19.41 7.99 43.16 3.66
36 37 4.011966 TCACAGAATCAGAATGTGCACT 57.988 40.909 19.41 0.00 43.16 4.40
37 38 4.155462 ACATCACAGAATCAGAATGTGCAC 59.845 41.667 10.75 10.75 43.16 4.57
38 39 4.329392 ACATCACAGAATCAGAATGTGCA 58.671 39.130 8.31 0.00 43.16 4.57
39 40 4.959596 ACATCACAGAATCAGAATGTGC 57.040 40.909 8.31 0.00 43.16 4.57
40 41 9.322773 AGTAATACATCACAGAATCAGAATGTG 57.677 33.333 7.24 7.24 44.48 3.21
44 45 8.144478 GCCTAGTAATACATCACAGAATCAGAA 58.856 37.037 0.00 0.00 0.00 3.02
45 46 7.287696 TGCCTAGTAATACATCACAGAATCAGA 59.712 37.037 0.00 0.00 0.00 3.27
46 47 7.436933 TGCCTAGTAATACATCACAGAATCAG 58.563 38.462 0.00 0.00 0.00 2.90
47 48 7.360113 TGCCTAGTAATACATCACAGAATCA 57.640 36.000 0.00 0.00 0.00 2.57
48 49 8.839310 AATGCCTAGTAATACATCACAGAATC 57.161 34.615 0.00 0.00 0.00 2.52
49 50 8.432013 TGAATGCCTAGTAATACATCACAGAAT 58.568 33.333 0.00 0.00 0.00 2.40
50 51 7.791029 TGAATGCCTAGTAATACATCACAGAA 58.209 34.615 0.00 0.00 0.00 3.02
51 52 7.360113 TGAATGCCTAGTAATACATCACAGA 57.640 36.000 0.00 0.00 0.00 3.41
52 53 9.881649 ATATGAATGCCTAGTAATACATCACAG 57.118 33.333 0.00 0.00 0.00 3.66
53 54 9.657419 CATATGAATGCCTAGTAATACATCACA 57.343 33.333 0.00 0.00 0.00 3.58
77 78 8.159542 AGTTTTGTAACTTGAAGCGATTTGCAT 61.160 33.333 0.00 0.00 43.73 3.96
78 79 6.899258 AGTTTTGTAACTTGAAGCGATTTGCA 60.899 34.615 0.00 0.00 43.73 4.08
79 80 5.458779 AGTTTTGTAACTTGAAGCGATTTGC 59.541 36.000 0.00 0.00 41.85 3.68
93 94 9.053840 GCTAGGGGATCTAATAAGTTTTGTAAC 57.946 37.037 0.00 0.00 34.36 2.50
94 95 8.999895 AGCTAGGGGATCTAATAAGTTTTGTAA 58.000 33.333 0.00 0.00 0.00 2.41
95 96 8.562949 AGCTAGGGGATCTAATAAGTTTTGTA 57.437 34.615 0.00 0.00 0.00 2.41
96 97 7.453141 AGCTAGGGGATCTAATAAGTTTTGT 57.547 36.000 0.00 0.00 0.00 2.83
97 98 8.652290 ACTAGCTAGGGGATCTAATAAGTTTTG 58.348 37.037 24.35 0.00 0.00 2.44
98 99 8.800515 ACTAGCTAGGGGATCTAATAAGTTTT 57.199 34.615 24.35 0.00 0.00 2.43
100 101 9.482175 CATACTAGCTAGGGGATCTAATAAGTT 57.518 37.037 24.35 0.47 0.00 2.66
101 102 8.625571 ACATACTAGCTAGGGGATCTAATAAGT 58.374 37.037 24.35 3.55 0.00 2.24
104 105 9.516788 TCTACATACTAGCTAGGGGATCTAATA 57.483 37.037 24.35 5.17 0.00 0.98
105 106 8.408656 TCTACATACTAGCTAGGGGATCTAAT 57.591 38.462 24.35 2.98 0.00 1.73
106 107 7.825983 TCTACATACTAGCTAGGGGATCTAA 57.174 40.000 24.35 1.50 0.00 2.10
107 108 7.147284 CCATCTACATACTAGCTAGGGGATCTA 60.147 44.444 24.35 7.29 0.00 1.98
108 109 6.354389 CCATCTACATACTAGCTAGGGGATCT 60.354 46.154 24.35 5.17 0.00 2.75
109 110 5.830991 CCATCTACATACTAGCTAGGGGATC 59.169 48.000 24.35 0.00 0.00 3.36
110 111 5.496535 TCCATCTACATACTAGCTAGGGGAT 59.503 44.000 24.35 11.73 0.00 3.85
111 112 4.856182 TCCATCTACATACTAGCTAGGGGA 59.144 45.833 24.35 9.93 0.00 4.81
112 113 4.951094 GTCCATCTACATACTAGCTAGGGG 59.049 50.000 24.35 14.88 0.00 4.79
113 114 4.951094 GGTCCATCTACATACTAGCTAGGG 59.049 50.000 24.35 15.21 0.00 3.53
114 115 4.951094 GGGTCCATCTACATACTAGCTAGG 59.049 50.000 24.35 9.60 0.00 3.02
115 116 5.571285 TGGGTCCATCTACATACTAGCTAG 58.429 45.833 19.44 19.44 0.00 3.42
116 117 5.594199 TGGGTCCATCTACATACTAGCTA 57.406 43.478 0.00 0.00 0.00 3.32
117 118 4.471078 TGGGTCCATCTACATACTAGCT 57.529 45.455 0.00 0.00 0.00 3.32
118 119 5.337652 GGATTGGGTCCATCTACATACTAGC 60.338 48.000 0.00 0.00 46.96 3.42
119 120 6.287589 GGATTGGGTCCATCTACATACTAG 57.712 45.833 0.00 0.00 46.96 2.57
142 143 2.352805 GAACCCAGACCCTGCAGG 59.647 66.667 26.87 26.87 43.78 4.85
143 144 2.352805 GGAACCCAGACCCTGCAG 59.647 66.667 6.78 6.78 0.00 4.41
144 145 2.449518 TGGAACCCAGACCCTGCA 60.450 61.111 0.00 0.00 0.00 4.41
145 146 2.034221 GTGGAACCCAGACCCTGC 59.966 66.667 0.00 0.00 32.34 4.85
156 157 2.297701 TGCTTGACAGAAAGGTGGAAC 58.702 47.619 0.00 0.00 0.00 3.62
157 158 2.727123 TGCTTGACAGAAAGGTGGAA 57.273 45.000 0.00 0.00 0.00 3.53
158 159 2.575532 CTTGCTTGACAGAAAGGTGGA 58.424 47.619 0.00 0.00 32.28 4.02
159 160 1.000938 GCTTGCTTGACAGAAAGGTGG 60.001 52.381 0.00 0.00 36.25 4.61
160 161 1.334419 CGCTTGCTTGACAGAAAGGTG 60.334 52.381 0.00 0.00 36.25 4.00
161 162 0.947244 CGCTTGCTTGACAGAAAGGT 59.053 50.000 0.00 0.00 36.25 3.50
162 163 0.947244 ACGCTTGCTTGACAGAAAGG 59.053 50.000 0.00 0.00 36.25 3.11
163 164 2.378806 CAACGCTTGCTTGACAGAAAG 58.621 47.619 0.00 0.00 38.64 2.62
164 165 2.473530 CAACGCTTGCTTGACAGAAA 57.526 45.000 0.00 0.00 0.00 2.52
175 176 1.280746 CTGTGGACAGCAACGCTTG 59.719 57.895 0.00 0.00 36.40 4.01
176 177 3.736483 CTGTGGACAGCAACGCTT 58.264 55.556 0.00 0.00 36.40 4.68
184 185 8.244412 AGATCACTGAATCTGACTGTGGACAG 62.244 46.154 5.21 5.21 40.77 3.51
185 186 2.965147 TCACTGAATCTGACTGTGGACA 59.035 45.455 0.00 0.00 37.63 4.02
186 187 3.667497 TCACTGAATCTGACTGTGGAC 57.333 47.619 0.00 0.00 37.63 4.02
187 188 4.092279 AGATCACTGAATCTGACTGTGGA 58.908 43.478 0.00 0.00 37.63 4.02
188 189 4.468765 AGATCACTGAATCTGACTGTGG 57.531 45.455 0.00 0.00 37.63 4.17
189 190 9.761504 ATTTATAGATCACTGAATCTGACTGTG 57.238 33.333 0.00 0.00 36.66 3.66
190 191 9.979578 GATTTATAGATCACTGAATCTGACTGT 57.020 33.333 0.00 0.00 36.66 3.55
193 194 9.979578 ACAGATTTATAGATCACTGAATCTGAC 57.020 33.333 28.96 5.40 42.88 3.51
204 205 9.904198 TGGTCATTTGAACAGATTTATAGATCA 57.096 29.630 6.08 0.00 36.73 2.92
214 215 9.480053 CAAGTAAATTTGGTCATTTGAACAGAT 57.520 29.630 0.00 0.00 43.44 2.90
215 216 8.690884 TCAAGTAAATTTGGTCATTTGAACAGA 58.309 29.630 0.00 0.00 43.44 3.41
216 217 8.870160 TCAAGTAAATTTGGTCATTTGAACAG 57.130 30.769 0.00 0.00 43.44 3.16
217 218 9.258826 CATCAAGTAAATTTGGTCATTTGAACA 57.741 29.630 0.00 0.00 40.52 3.18
218 219 9.474920 TCATCAAGTAAATTTGGTCATTTGAAC 57.525 29.630 0.00 0.00 0.00 3.18
220 221 9.642327 CATCATCAAGTAAATTTGGTCATTTGA 57.358 29.630 0.00 0.28 0.00 2.69
221 222 9.642327 TCATCATCAAGTAAATTTGGTCATTTG 57.358 29.630 0.00 0.00 0.00 2.32
225 226 9.123902 CCTATCATCATCAAGTAAATTTGGTCA 57.876 33.333 0.00 0.00 0.00 4.02
226 227 9.125026 ACCTATCATCATCAAGTAAATTTGGTC 57.875 33.333 0.00 0.00 0.00 4.02
235 236 9.533831 TCAAGCTATACCTATCATCATCAAGTA 57.466 33.333 0.00 0.00 0.00 2.24
236 237 8.427902 TCAAGCTATACCTATCATCATCAAGT 57.572 34.615 0.00 0.00 0.00 3.16
237 238 9.716531 TTTCAAGCTATACCTATCATCATCAAG 57.283 33.333 0.00 0.00 0.00 3.02
238 239 9.716531 CTTTCAAGCTATACCTATCATCATCAA 57.283 33.333 0.00 0.00 0.00 2.57
239 240 9.093458 TCTTTCAAGCTATACCTATCATCATCA 57.907 33.333 0.00 0.00 0.00 3.07
240 241 9.585099 CTCTTTCAAGCTATACCTATCATCATC 57.415 37.037 0.00 0.00 0.00 2.92
241 242 9.319060 TCTCTTTCAAGCTATACCTATCATCAT 57.681 33.333 0.00 0.00 0.00 2.45
242 243 8.712228 TCTCTTTCAAGCTATACCTATCATCA 57.288 34.615 0.00 0.00 0.00 3.07
243 244 7.759433 GCTCTCTTTCAAGCTATACCTATCATC 59.241 40.741 0.00 0.00 35.60 2.92
244 245 7.234371 TGCTCTCTTTCAAGCTATACCTATCAT 59.766 37.037 0.00 0.00 39.31 2.45
245 246 6.551227 TGCTCTCTTTCAAGCTATACCTATCA 59.449 38.462 0.00 0.00 39.31 2.15
246 247 6.987386 TGCTCTCTTTCAAGCTATACCTATC 58.013 40.000 0.00 0.00 39.31 2.08
247 248 6.780031 TCTGCTCTCTTTCAAGCTATACCTAT 59.220 38.462 0.00 0.00 39.31 2.57
248 249 6.129874 TCTGCTCTCTTTCAAGCTATACCTA 58.870 40.000 0.00 0.00 39.31 3.08
249 250 4.959210 TCTGCTCTCTTTCAAGCTATACCT 59.041 41.667 0.00 0.00 39.31 3.08
250 251 5.269505 TCTGCTCTCTTTCAAGCTATACC 57.730 43.478 0.00 0.00 39.31 2.73
251 252 5.925969 GGATCTGCTCTCTTTCAAGCTATAC 59.074 44.000 0.00 0.00 39.31 1.47
252 253 5.600069 TGGATCTGCTCTCTTTCAAGCTATA 59.400 40.000 0.00 0.00 39.31 1.31
253 254 4.408270 TGGATCTGCTCTCTTTCAAGCTAT 59.592 41.667 0.00 0.00 39.31 2.97
254 255 3.771479 TGGATCTGCTCTCTTTCAAGCTA 59.229 43.478 0.00 0.00 39.31 3.32
255 256 2.570752 TGGATCTGCTCTCTTTCAAGCT 59.429 45.455 0.00 0.00 39.31 3.74
256 257 2.983229 TGGATCTGCTCTCTTTCAAGC 58.017 47.619 0.00 0.00 39.02 4.01
257 258 6.596888 TGTATTTGGATCTGCTCTCTTTCAAG 59.403 38.462 0.00 0.00 0.00 3.02
258 259 6.475504 TGTATTTGGATCTGCTCTCTTTCAA 58.524 36.000 0.00 0.00 0.00 2.69
259 260 6.053632 TGTATTTGGATCTGCTCTCTTTCA 57.946 37.500 0.00 0.00 0.00 2.69
260 261 8.147058 TCTATGTATTTGGATCTGCTCTCTTTC 58.853 37.037 0.00 0.00 0.00 2.62
261 262 7.930865 GTCTATGTATTTGGATCTGCTCTCTTT 59.069 37.037 0.00 0.00 0.00 2.52
262 263 7.070447 TGTCTATGTATTTGGATCTGCTCTCTT 59.930 37.037 0.00 0.00 0.00 2.85
263 264 6.552725 TGTCTATGTATTTGGATCTGCTCTCT 59.447 38.462 0.00 0.00 0.00 3.10
264 265 6.753180 TGTCTATGTATTTGGATCTGCTCTC 58.247 40.000 0.00 0.00 0.00 3.20
265 266 6.737720 TGTCTATGTATTTGGATCTGCTCT 57.262 37.500 0.00 0.00 0.00 4.09
266 267 6.933521 ACATGTCTATGTATTTGGATCTGCTC 59.066 38.462 0.00 0.00 45.45 4.26
267 268 6.835174 ACATGTCTATGTATTTGGATCTGCT 58.165 36.000 0.00 0.00 45.45 4.24
268 269 7.875041 ACTACATGTCTATGTATTTGGATCTGC 59.125 37.037 0.00 0.00 45.90 4.26
284 285 9.973450 CTTTGAAGCTATACATACTACATGTCT 57.027 33.333 0.00 0.00 33.76 3.41
285 286 9.967346 TCTTTGAAGCTATACATACTACATGTC 57.033 33.333 0.00 0.00 33.76 3.06
292 293 9.944376 TTGAGTTTCTTTGAAGCTATACATACT 57.056 29.630 0.00 0.00 0.00 2.12
295 296 8.940952 GTCTTGAGTTTCTTTGAAGCTATACAT 58.059 33.333 0.00 0.00 0.00 2.29
296 297 7.931407 TGTCTTGAGTTTCTTTGAAGCTATACA 59.069 33.333 0.00 0.00 0.00 2.29
297 298 8.311650 TGTCTTGAGTTTCTTTGAAGCTATAC 57.688 34.615 0.00 0.00 0.00 1.47
299 300 7.992754 ATGTCTTGAGTTTCTTTGAAGCTAT 57.007 32.000 0.00 0.00 0.00 2.97
300 301 7.931407 TGTATGTCTTGAGTTTCTTTGAAGCTA 59.069 33.333 0.00 0.00 0.00 3.32
301 302 6.767902 TGTATGTCTTGAGTTTCTTTGAAGCT 59.232 34.615 0.00 0.00 0.00 3.74
302 303 6.959361 TGTATGTCTTGAGTTTCTTTGAAGC 58.041 36.000 0.00 0.00 0.00 3.86
303 304 7.227512 ACCTGTATGTCTTGAGTTTCTTTGAAG 59.772 37.037 0.00 0.00 0.00 3.02
304 305 7.054124 ACCTGTATGTCTTGAGTTTCTTTGAA 58.946 34.615 0.00 0.00 0.00 2.69
305 306 6.591935 ACCTGTATGTCTTGAGTTTCTTTGA 58.408 36.000 0.00 0.00 0.00 2.69
306 307 6.867662 ACCTGTATGTCTTGAGTTTCTTTG 57.132 37.500 0.00 0.00 0.00 2.77
307 308 9.003658 CATAACCTGTATGTCTTGAGTTTCTTT 57.996 33.333 0.00 0.00 0.00 2.52
308 309 8.157476 ACATAACCTGTATGTCTTGAGTTTCTT 58.843 33.333 0.00 0.00 35.91 2.52
309 310 7.680730 ACATAACCTGTATGTCTTGAGTTTCT 58.319 34.615 0.00 0.00 35.91 2.52
310 311 7.907214 ACATAACCTGTATGTCTTGAGTTTC 57.093 36.000 0.00 0.00 35.91 2.78
323 324 7.676468 TGCCTCCATATGTATACATAACCTGTA 59.324 37.037 25.41 12.33 44.29 2.74
324 325 6.500400 TGCCTCCATATGTATACATAACCTGT 59.500 38.462 25.41 9.39 41.60 4.00
325 326 6.946340 TGCCTCCATATGTATACATAACCTG 58.054 40.000 25.41 19.29 41.60 4.00
326 327 7.568128 TTGCCTCCATATGTATACATAACCT 57.432 36.000 25.41 10.05 41.60 3.50
327 328 8.267894 AGATTGCCTCCATATGTATACATAACC 58.732 37.037 25.41 12.62 41.60 2.85
328 329 9.102757 CAGATTGCCTCCATATGTATACATAAC 57.897 37.037 25.41 13.23 41.60 1.89
329 330 8.825774 ACAGATTGCCTCCATATGTATACATAA 58.174 33.333 25.41 11.65 41.60 1.90
330 331 8.379428 ACAGATTGCCTCCATATGTATACATA 57.621 34.615 24.22 24.22 42.38 2.29
331 332 7.262990 ACAGATTGCCTCCATATGTATACAT 57.737 36.000 21.57 21.57 40.22 2.29
332 333 6.295859 GGACAGATTGCCTCCATATGTATACA 60.296 42.308 8.27 8.27 0.00 2.29
333 334 6.070538 AGGACAGATTGCCTCCATATGTATAC 60.071 42.308 1.24 0.00 0.00 1.47
334 335 6.025539 AGGACAGATTGCCTCCATATGTATA 58.974 40.000 1.24 0.00 0.00 1.47
335 336 4.848660 AGGACAGATTGCCTCCATATGTAT 59.151 41.667 1.24 0.00 0.00 2.29
336 337 4.234550 AGGACAGATTGCCTCCATATGTA 58.765 43.478 1.24 0.00 0.00 2.29
337 338 3.051581 AGGACAGATTGCCTCCATATGT 58.948 45.455 1.24 0.00 0.00 2.29
338 339 3.784511 AGGACAGATTGCCTCCATATG 57.215 47.619 0.00 0.00 0.00 1.78
339 340 3.461085 ACAAGGACAGATTGCCTCCATAT 59.539 43.478 0.00 0.00 32.07 1.78
340 341 2.846206 ACAAGGACAGATTGCCTCCATA 59.154 45.455 0.00 0.00 32.07 2.74
341 342 1.637553 ACAAGGACAGATTGCCTCCAT 59.362 47.619 0.00 0.00 32.07 3.41
342 343 1.067295 ACAAGGACAGATTGCCTCCA 58.933 50.000 0.00 0.00 32.07 3.86
343 344 2.206576 AACAAGGACAGATTGCCTCC 57.793 50.000 0.00 0.00 32.07 4.30
344 345 3.569701 TCAAAACAAGGACAGATTGCCTC 59.430 43.478 0.00 0.00 32.07 4.70
345 346 3.565307 TCAAAACAAGGACAGATTGCCT 58.435 40.909 0.00 0.00 35.61 4.75
346 347 3.858503 GCTCAAAACAAGGACAGATTGCC 60.859 47.826 0.00 0.00 0.00 4.52
347 348 3.005155 AGCTCAAAACAAGGACAGATTGC 59.995 43.478 0.00 0.00 0.00 3.56
348 349 4.276678 TGAGCTCAAAACAAGGACAGATTG 59.723 41.667 15.67 0.00 0.00 2.67
349 350 4.276926 GTGAGCTCAAAACAAGGACAGATT 59.723 41.667 20.19 0.00 0.00 2.40
411 412 6.925165 ACAACTGAGCAATTCCATGTTAAAAG 59.075 34.615 0.00 0.00 0.00 2.27
425 426 6.940298 AGTATTTTAGGCTAACAACTGAGCAA 59.060 34.615 6.43 0.00 40.64 3.91
465 466 5.756950 TTACAACTTCGTTATTCTGCTCG 57.243 39.130 0.00 0.00 0.00 5.03
476 477 8.625786 AATGGTTTAACCTATTACAACTTCGT 57.374 30.769 15.68 0.00 39.58 3.85
502 513 6.947644 TGCTTGCACTGATATATGTGATTT 57.052 33.333 10.62 0.00 36.38 2.17
505 516 5.647225 TGTTTGCTTGCACTGATATATGTGA 59.353 36.000 10.62 0.00 36.38 3.58
506 517 5.882553 TGTTTGCTTGCACTGATATATGTG 58.117 37.500 0.00 0.00 37.26 3.21
507 518 6.704289 ATGTTTGCTTGCACTGATATATGT 57.296 33.333 0.00 0.00 0.00 2.29
509 520 8.625786 TCATATGTTTGCTTGCACTGATATAT 57.374 30.769 1.90 0.00 0.00 0.86
510 521 8.344831 GTTCATATGTTTGCTTGCACTGATATA 58.655 33.333 1.90 0.00 0.00 0.86
530 542 2.290832 TGTGAGCTGGCCATTGTTCATA 60.291 45.455 5.51 4.92 0.00 2.15
538 550 0.111061 TTCAGTTGTGAGCTGGCCAT 59.889 50.000 5.51 0.00 32.98 4.40
553 565 4.142337 TGCATGGTGATTGTAGCATTTCAG 60.142 41.667 0.00 0.00 36.71 3.02
555 567 4.374843 TGCATGGTGATTGTAGCATTTC 57.625 40.909 0.00 0.00 36.71 2.17
556 568 6.659745 ATATGCATGGTGATTGTAGCATTT 57.340 33.333 10.16 0.00 42.16 2.32
566 578 8.362639 GGAAAATGTCTTTATATGCATGGTGAT 58.637 33.333 10.16 0.00 0.00 3.06
568 580 6.925165 GGGAAAATGTCTTTATATGCATGGTG 59.075 38.462 10.16 0.00 0.00 4.17
569 581 6.041979 GGGGAAAATGTCTTTATATGCATGGT 59.958 38.462 10.16 0.04 0.00 3.55
570 582 6.458210 GGGGAAAATGTCTTTATATGCATGG 58.542 40.000 10.16 0.00 0.00 3.66
571 583 6.268387 AGGGGGAAAATGTCTTTATATGCATG 59.732 38.462 10.16 0.00 0.00 4.06
572 584 6.384603 AGGGGGAAAATGTCTTTATATGCAT 58.615 36.000 3.79 3.79 0.00 3.96
575 623 7.981225 CACAAAGGGGGAAAATGTCTTTATATG 59.019 37.037 0.00 0.00 0.00 1.78
581 629 2.368548 GCACAAAGGGGGAAAATGTCTT 59.631 45.455 0.00 0.00 0.00 3.01
589 637 1.063266 AGTTTCAGCACAAAGGGGGAA 60.063 47.619 0.00 0.00 0.00 3.97
595 643 1.202325 TGCAGCAGTTTCAGCACAAAG 60.202 47.619 0.00 0.00 31.05 2.77
596 644 0.816373 TGCAGCAGTTTCAGCACAAA 59.184 45.000 0.00 0.00 31.05 2.83
598 646 1.894881 TATGCAGCAGTTTCAGCACA 58.105 45.000 0.00 0.00 40.14 4.57
599 647 2.793933 CATATGCAGCAGTTTCAGCAC 58.206 47.619 0.00 0.00 40.14 4.40
600 648 1.133598 GCATATGCAGCAGTTTCAGCA 59.866 47.619 22.84 0.00 41.59 4.41
601 649 1.404391 AGCATATGCAGCAGTTTCAGC 59.596 47.619 28.62 0.00 45.16 4.26
603 651 2.713877 TCAGCATATGCAGCAGTTTCA 58.286 42.857 28.62 0.91 45.16 2.69
608 656 6.009115 TCATTATTTCAGCATATGCAGCAG 57.991 37.500 28.62 15.26 45.16 4.24
626 674 8.987890 GGCTTATTTGTTTTCTGCTTTTCATTA 58.012 29.630 0.00 0.00 0.00 1.90
627 675 7.716560 AGGCTTATTTGTTTTCTGCTTTTCATT 59.283 29.630 0.00 0.00 0.00 2.57
643 691 7.220030 ACATATGTCTACCTGAGGCTTATTTG 58.780 38.462 1.41 0.00 29.86 2.32
644 692 7.380423 ACATATGTCTACCTGAGGCTTATTT 57.620 36.000 1.41 0.00 29.86 1.40
646 694 5.482175 GGACATATGTCTACCTGAGGCTTAT 59.518 44.000 29.87 0.00 44.20 1.73
647 695 4.833380 GGACATATGTCTACCTGAGGCTTA 59.167 45.833 29.87 0.00 44.20 3.09
648 696 3.643792 GGACATATGTCTACCTGAGGCTT 59.356 47.826 29.87 0.00 44.20 4.35
649 697 3.116939 AGGACATATGTCTACCTGAGGCT 60.117 47.826 29.87 15.39 44.20 4.58
650 698 3.235200 AGGACATATGTCTACCTGAGGC 58.765 50.000 29.87 13.60 44.20 4.70
651 699 5.636123 AGTAGGACATATGTCTACCTGAGG 58.364 45.833 29.87 0.00 44.20 3.86
652 700 7.589958 AAAGTAGGACATATGTCTACCTGAG 57.410 40.000 29.87 0.00 44.20 3.35
653 701 9.656323 AATAAAGTAGGACATATGTCTACCTGA 57.344 33.333 29.87 15.70 44.20 3.86
667 715 7.987458 TGTGGATCATCTGAAATAAAGTAGGAC 59.013 37.037 0.00 0.00 0.00 3.85
670 718 9.166173 TGTTGTGGATCATCTGAAATAAAGTAG 57.834 33.333 0.00 0.00 0.00 2.57
671 719 9.685276 ATGTTGTGGATCATCTGAAATAAAGTA 57.315 29.630 0.00 0.00 0.00 2.24
675 723 8.812513 AGAATGTTGTGGATCATCTGAAATAA 57.187 30.769 0.00 0.00 0.00 1.40
684 732 4.597004 AGCTGAAGAATGTTGTGGATCAT 58.403 39.130 0.00 0.00 0.00 2.45
686 734 6.238593 GGATTAGCTGAAGAATGTTGTGGATC 60.239 42.308 0.00 0.00 0.00 3.36
698 746 5.519808 TGAGAGTTAGGGATTAGCTGAAGA 58.480 41.667 0.00 0.00 0.00 2.87
699 747 5.860941 TGAGAGTTAGGGATTAGCTGAAG 57.139 43.478 0.00 0.00 0.00 3.02
701 749 5.483937 TGTTTGAGAGTTAGGGATTAGCTGA 59.516 40.000 0.00 0.00 0.00 4.26
702 750 5.734720 TGTTTGAGAGTTAGGGATTAGCTG 58.265 41.667 0.00 0.00 0.00 4.24
703 751 6.374417 TTGTTTGAGAGTTAGGGATTAGCT 57.626 37.500 0.00 0.00 0.00 3.32
705 753 8.622948 AGTTTTGTTTGAGAGTTAGGGATTAG 57.377 34.615 0.00 0.00 0.00 1.73
706 754 9.720769 CTAGTTTTGTTTGAGAGTTAGGGATTA 57.279 33.333 0.00 0.00 0.00 1.75
708 756 7.168905 CCTAGTTTTGTTTGAGAGTTAGGGAT 58.831 38.462 0.00 0.00 0.00 3.85
709 757 6.531021 CCTAGTTTTGTTTGAGAGTTAGGGA 58.469 40.000 0.00 0.00 0.00 4.20
713 761 7.934665 TGTATGCCTAGTTTTGTTTGAGAGTTA 59.065 33.333 0.00 0.00 0.00 2.24
716 764 6.428159 ACTGTATGCCTAGTTTTGTTTGAGAG 59.572 38.462 0.00 0.00 0.00 3.20
747 795 9.734984 CGGTTCCACCCTTTTATTCTTATATAT 57.265 33.333 0.00 0.00 33.75 0.86
749 797 7.718314 GTCGGTTCCACCCTTTTATTCTTATAT 59.282 37.037 0.00 0.00 33.75 0.86
750 798 7.049754 GTCGGTTCCACCCTTTTATTCTTATA 58.950 38.462 0.00 0.00 33.75 0.98
757 872 1.624813 TCGTCGGTTCCACCCTTTTAT 59.375 47.619 0.00 0.00 33.75 1.40
760 875 0.399075 ATTCGTCGGTTCCACCCTTT 59.601 50.000 0.00 0.00 33.75 3.11
764 879 2.884894 ATAGATTCGTCGGTTCCACC 57.115 50.000 0.00 0.00 34.05 4.61
769 884 7.765307 TCTAAAACAGTATAGATTCGTCGGTT 58.235 34.615 0.00 0.00 0.00 4.44
771 886 7.326305 CCATCTAAAACAGTATAGATTCGTCGG 59.674 40.741 6.20 2.51 36.88 4.79
772 887 7.861372 ACCATCTAAAACAGTATAGATTCGTCG 59.139 37.037 6.20 0.00 36.88 5.12
791 906 7.722728 AGGACGTCATGTAAATAGTACCATCTA 59.277 37.037 18.91 0.00 0.00 1.98
794 909 6.726490 AGGACGTCATGTAAATAGTACCAT 57.274 37.500 18.91 0.00 0.00 3.55
795 910 6.071221 ACAAGGACGTCATGTAAATAGTACCA 60.071 38.462 20.60 0.00 0.00 3.25
811 970 4.712122 AAATCACACAAAACAAGGACGT 57.288 36.364 0.00 0.00 0.00 4.34
815 974 8.472683 TCAAAGTTAAATCACACAAAACAAGG 57.527 30.769 0.00 0.00 0.00 3.61
846 1006 9.324008 TGCACCCCATATATCATTAATCAAATT 57.676 29.630 0.00 0.00 0.00 1.82
853 1013 5.007034 CGGTTGCACCCCATATATCATTAA 58.993 41.667 0.00 0.00 33.75 1.40
858 1018 2.699954 CTCGGTTGCACCCCATATATC 58.300 52.381 0.00 0.00 33.75 1.63
859 1019 1.271379 GCTCGGTTGCACCCCATATAT 60.271 52.381 0.00 0.00 33.75 0.86
871 1031 3.965539 CTCTGGCCTGGCTCGGTTG 62.966 68.421 19.68 7.72 0.00 3.77
878 1038 0.680921 TAATTGTGCTCTGGCCTGGC 60.681 55.000 11.05 11.05 37.74 4.85
880 1040 2.119801 AGTAATTGTGCTCTGGCCTG 57.880 50.000 3.32 2.92 37.74 4.85
902 1062 9.823647 GGAAGTTAGAAGACATGAATCTAATCA 57.176 33.333 16.64 0.00 37.81 2.57
903 1063 9.823647 TGGAAGTTAGAAGACATGAATCTAATC 57.176 33.333 16.64 12.83 37.81 1.75
906 1066 9.823647 GATTGGAAGTTAGAAGACATGAATCTA 57.176 33.333 0.00 1.23 0.00 1.98
913 1073 6.725364 ACATGGATTGGAAGTTAGAAGACAT 58.275 36.000 0.00 0.00 0.00 3.06
934 1148 3.760684 GGAAGAAATCCTGCAACAGACAT 59.239 43.478 0.00 0.00 45.56 3.06
1056 1274 1.299976 CAGCTTGTACTCCCCCACC 59.700 63.158 0.00 0.00 0.00 4.61
1080 1298 3.322254 ACTCGACATCTTTCTTGACACCT 59.678 43.478 0.00 0.00 0.00 4.00
1218 1436 5.647658 GTCAACAACATCCTCCATGTCATAA 59.352 40.000 0.00 0.00 45.77 1.90
1249 1467 2.501223 GATCCCTCGACGCACACCAA 62.501 60.000 0.00 0.00 0.00 3.67
1282 1500 2.210116 GAGCTTGTTTGAGTCGGTGAA 58.790 47.619 0.00 0.00 0.00 3.18
1317 1535 4.415596 TGGTGAATAAGTTGGCCATCTTT 58.584 39.130 29.29 15.81 0.00 2.52
1332 1550 2.154462 CGAGTCTTGCCTTTGGTGAAT 58.846 47.619 0.00 0.00 0.00 2.57
1410 1628 1.588082 CCTGTACCTGTTACGCCGT 59.412 57.895 0.00 0.00 32.71 5.68
1542 1760 2.286872 CCATCTGTGAGCATCTTGGTC 58.713 52.381 0.00 0.00 44.54 4.02
1618 1842 1.302271 GTCCTCCGGGTCCAACAAC 60.302 63.158 0.00 0.00 0.00 3.32
1629 1853 0.895530 TAGTCTTGCCAAGTCCTCCG 59.104 55.000 4.04 0.00 0.00 4.63
2085 2529 3.349022 TGCTGAATGACATTGAGATGCA 58.651 40.909 17.58 7.29 36.72 3.96
2107 2551 5.593909 ACTTTGTGATTCATGTTGAGGAACA 59.406 36.000 0.00 0.00 46.13 3.18
2108 2552 6.076981 ACTTTGTGATTCATGTTGAGGAAC 57.923 37.500 0.00 0.00 0.00 3.62
2109 2553 6.320926 TGAACTTTGTGATTCATGTTGAGGAA 59.679 34.615 0.00 0.00 29.89 3.36
2110 2554 5.827267 TGAACTTTGTGATTCATGTTGAGGA 59.173 36.000 0.00 0.00 29.89 3.71
2111 2555 6.075762 TGAACTTTGTGATTCATGTTGAGG 57.924 37.500 0.00 0.00 29.89 3.86
2112 2556 9.681692 TTTATGAACTTTGTGATTCATGTTGAG 57.318 29.630 9.22 0.00 43.66 3.02
2115 2559 8.928733 GCATTTATGAACTTTGTGATTCATGTT 58.071 29.630 9.22 0.00 43.66 2.71
2116 2560 8.308931 AGCATTTATGAACTTTGTGATTCATGT 58.691 29.630 9.22 0.00 43.66 3.21
2117 2561 8.697846 AGCATTTATGAACTTTGTGATTCATG 57.302 30.769 9.22 0.00 43.66 3.07
2118 2562 9.715121 AAAGCATTTATGAACTTTGTGATTCAT 57.285 25.926 4.97 4.97 45.33 2.57
2119 2563 8.980610 CAAAGCATTTATGAACTTTGTGATTCA 58.019 29.630 11.50 0.00 42.45 2.57
2120 2564 9.195411 TCAAAGCATTTATGAACTTTGTGATTC 57.805 29.630 15.87 0.00 45.76 2.52
2121 2565 9.545105 TTCAAAGCATTTATGAACTTTGTGATT 57.455 25.926 15.87 0.00 45.76 2.57
2122 2566 9.715121 ATTCAAAGCATTTATGAACTTTGTGAT 57.285 25.926 15.87 11.43 45.76 3.06
2123 2567 9.195411 GATTCAAAGCATTTATGAACTTTGTGA 57.805 29.630 15.87 10.35 45.76 3.58
2124 2568 8.437742 GGATTCAAAGCATTTATGAACTTTGTG 58.562 33.333 15.87 1.81 45.76 3.33
2125 2569 8.149647 TGGATTCAAAGCATTTATGAACTTTGT 58.850 29.630 15.87 5.12 45.76 2.83
2126 2570 8.537049 TGGATTCAAAGCATTTATGAACTTTG 57.463 30.769 12.68 12.68 46.55 2.77
2127 2571 9.729281 ATTGGATTCAAAGCATTTATGAACTTT 57.271 25.926 0.00 0.00 35.03 2.66
2128 2572 9.158233 CATTGGATTCAAAGCATTTATGAACTT 57.842 29.630 0.00 0.00 35.03 2.66
2129 2573 8.533657 TCATTGGATTCAAAGCATTTATGAACT 58.466 29.630 0.00 0.00 35.03 3.01
2130 2574 8.706492 TCATTGGATTCAAAGCATTTATGAAC 57.294 30.769 0.00 0.00 35.03 3.18
2131 2575 9.893634 ATTCATTGGATTCAAAGCATTTATGAA 57.106 25.926 0.00 0.00 37.43 2.57
2132 2576 9.537192 GATTCATTGGATTCAAAGCATTTATGA 57.463 29.630 0.00 0.00 35.03 2.15
2133 2577 9.320352 TGATTCATTGGATTCAAAGCATTTATG 57.680 29.630 0.00 0.00 35.03 1.90
2134 2578 9.893634 TTGATTCATTGGATTCAAAGCATTTAT 57.106 25.926 0.00 0.00 39.28 1.40
2135 2579 9.153721 GTTGATTCATTGGATTCAAAGCATTTA 57.846 29.630 0.00 0.00 42.06 1.40
2136 2580 7.120138 GGTTGATTCATTGGATTCAAAGCATTT 59.880 33.333 0.00 0.00 42.06 2.32
2137 2581 6.596497 GGTTGATTCATTGGATTCAAAGCATT 59.404 34.615 0.00 0.00 42.06 3.56
2138 2582 6.110707 GGTTGATTCATTGGATTCAAAGCAT 58.889 36.000 0.00 0.00 42.06 3.79
2139 2583 5.011840 TGGTTGATTCATTGGATTCAAAGCA 59.988 36.000 0.00 0.00 42.06 3.91
2276 2735 2.344592 TGGTAGTTGTTCAGGACCCAT 58.655 47.619 0.00 0.00 0.00 4.00
2750 3391 7.012044 AGCTTGTAAATATCACCGGTATTTGTC 59.988 37.037 19.58 13.93 34.54 3.18
2937 3578 4.166144 CCAATCCTCCATAGGTTTACCACT 59.834 45.833 1.13 0.00 44.09 4.00
2938 3579 4.079958 ACCAATCCTCCATAGGTTTACCAC 60.080 45.833 1.13 0.00 44.09 4.16
2973 3614 4.766891 TCCAGATCCAAAACCAATTGAGTC 59.233 41.667 7.12 0.00 31.84 3.36
2978 3619 5.595952 GCTATCTCCAGATCCAAAACCAATT 59.404 40.000 0.00 0.00 36.05 2.32
3068 3709 1.746220 AGATGCAGTAGACACGACCTC 59.254 52.381 0.00 0.00 0.00 3.85
3074 3715 1.135257 ACGCTCAGATGCAGTAGACAC 60.135 52.381 0.00 0.00 0.00 3.67
3123 3764 2.424601 CCCACTGCCATATCAGTTTGTG 59.575 50.000 0.00 0.00 44.26 3.33
3164 3805 0.981943 AACTTACCCCTGGTTCCTCG 59.018 55.000 0.00 0.00 37.09 4.63
3253 3894 8.936070 ACAAGCATCTATTGTGTACGTTATTA 57.064 30.769 0.00 0.00 39.36 0.98
3255 3896 6.198403 CGACAAGCATCTATTGTGTACGTTAT 59.802 38.462 0.00 0.00 40.86 1.89
3354 3995 3.860536 GCTGAAGGTATGTTCTTCTCGTC 59.139 47.826 0.00 0.00 40.73 4.20
3430 4071 0.245539 CCTCACTTTTGGCATGCCTG 59.754 55.000 35.53 24.92 36.94 4.85
3431 4072 0.178953 ACCTCACTTTTGGCATGCCT 60.179 50.000 35.53 14.23 36.94 4.75
3519 4160 4.481368 AACGGCACAGTTCCATATCTAA 57.519 40.909 0.00 0.00 0.00 2.10
3531 4172 1.264288 GTCTTCCTCAAAACGGCACAG 59.736 52.381 0.00 0.00 0.00 3.66
3537 4178 1.145803 GGACGGTCTTCCTCAAAACG 58.854 55.000 8.23 0.00 32.24 3.60
3546 4187 3.194968 TCAAGATGGTAAGGACGGTCTTC 59.805 47.826 8.23 0.00 31.38 2.87
3611 4252 7.451566 TCTGGCAGCTTACTAATATATCTGTCA 59.548 37.037 10.34 3.49 34.19 3.58
3613 4254 7.782897 TCTGGCAGCTTACTAATATATCTGT 57.217 36.000 10.34 0.00 0.00 3.41
3616 4257 9.712305 TTTCTTCTGGCAGCTTACTAATATATC 57.288 33.333 10.34 0.00 0.00 1.63
3660 4301 1.610102 GCTCAAGTCCAGTGTCTGCAT 60.610 52.381 0.00 0.00 0.00 3.96
3680 4321 3.802948 AACTCTCTTATACCAGTGCCG 57.197 47.619 0.00 0.00 0.00 5.69
3748 4399 6.142480 CACTGTTATACTATTAGCTGACGTGC 59.858 42.308 0.00 0.00 0.00 5.34
3754 4405 9.464714 AATTCGACACTGTTATACTATTAGCTG 57.535 33.333 0.00 0.00 0.00 4.24
3757 4408 9.961265 TCCAATTCGACACTGTTATACTATTAG 57.039 33.333 0.00 0.00 0.00 1.73
3762 4413 7.434492 CCTATCCAATTCGACACTGTTATACT 58.566 38.462 0.00 0.00 0.00 2.12
3875 4532 4.932200 GCAGTTAACTTACAGATGAGCACT 59.068 41.667 5.07 0.00 0.00 4.40
3932 4598 4.112634 TCCGCAGATTGAATAAAGACTCG 58.887 43.478 0.00 0.00 0.00 4.18
3943 4609 3.420893 ACTTGGATTTTCCGCAGATTGA 58.579 40.909 0.80 0.00 40.17 2.57
3982 4648 1.532794 GGTGTTGGTTGCATGGGGA 60.533 57.895 0.00 0.00 0.00 4.81
3985 4651 1.865788 CTCGGGTGTTGGTTGCATGG 61.866 60.000 0.00 0.00 0.00 3.66
3988 4654 0.180642 TAACTCGGGTGTTGGTTGCA 59.819 50.000 0.00 0.00 0.00 4.08
3999 4665 3.552875 TCCAGTAGTCATCTAACTCGGG 58.447 50.000 0.00 0.00 0.00 5.14
4066 4732 1.732809 GAAGAAGCCTACTGAAACCGC 59.267 52.381 0.00 0.00 0.00 5.68
4067 4733 2.289444 TGGAAGAAGCCTACTGAAACCG 60.289 50.000 0.00 0.00 0.00 4.44
4104 4794 2.564062 CAAAATCACCCACTTCCATGCT 59.436 45.455 0.00 0.00 0.00 3.79
4105 4795 2.354003 CCAAAATCACCCACTTCCATGC 60.354 50.000 0.00 0.00 0.00 4.06
4171 4861 0.984230 AATCGTGTCCCACATCAGGT 59.016 50.000 0.00 0.00 33.40 4.00
4175 4865 1.656652 CAGGAATCGTGTCCCACATC 58.343 55.000 3.88 0.00 38.59 3.06
4176 4866 0.253044 CCAGGAATCGTGTCCCACAT 59.747 55.000 2.16 0.00 38.59 3.21
4178 4868 1.078426 CCCAGGAATCGTGTCCCAC 60.078 63.158 2.16 0.00 38.59 4.61
4182 4872 2.124695 GCCCCCAGGAATCGTGTC 60.125 66.667 2.16 0.00 33.47 3.67
4185 4875 2.597340 CATGCCCCCAGGAATCGT 59.403 61.111 0.00 0.00 33.47 3.73
4214 4904 0.821711 TCAACTTGGGGAAAGCACCG 60.822 55.000 0.00 0.00 42.06 4.94
4238 4928 2.516930 GGCGCATACACCCTGCAT 60.517 61.111 10.83 0.00 39.64 3.96
4248 4938 2.016318 CAGAAACCTGAATGGCGCATA 58.984 47.619 10.83 0.00 40.22 3.14
4282 4972 3.134127 GCAGGTCACCGGAATGGC 61.134 66.667 9.46 0.00 43.94 4.40
4283 4973 2.819595 CGCAGGTCACCGGAATGG 60.820 66.667 9.46 0.00 46.41 3.16
4284 4974 2.100631 GTCGCAGGTCACCGGAATG 61.101 63.158 9.46 0.00 0.00 2.67
4285 4975 2.264794 GTCGCAGGTCACCGGAAT 59.735 61.111 9.46 0.00 0.00 3.01
4286 4976 3.228017 TGTCGCAGGTCACCGGAA 61.228 61.111 9.46 0.00 0.00 4.30
4483 5173 0.605589 CAGCAACTCCTCTTCGACCT 59.394 55.000 0.00 0.00 0.00 3.85
4552 5242 0.178903 CTCGGGAGGGGAATGGGATA 60.179 60.000 0.00 0.00 0.00 2.59
4611 5302 1.300620 CTTGTCTCCGTTCCACGCA 60.301 57.895 0.00 0.00 40.91 5.24
4779 5575 1.882625 CGATCGCTTTCCCGCATCA 60.883 57.895 0.26 0.00 0.00 3.07
4788 5584 3.536956 TTGGGACTTATCGATCGCTTT 57.463 42.857 11.09 0.00 0.00 3.51
5223 6107 4.626081 ACCGCTGCAACGAGGCTT 62.626 61.111 11.83 0.00 34.06 4.35
5269 6153 1.358787 TCCCGAGTCCCTACCTGTTTA 59.641 52.381 0.00 0.00 0.00 2.01
5395 6290 4.649267 TGTGGTGATTTGGGACTTATCA 57.351 40.909 0.00 0.00 0.00 2.15
5479 6374 5.195146 TGTTCCAGGGACTTATAGGTCTAGA 59.805 44.000 14.01 4.40 34.60 2.43
5487 6382 4.263594 GGGTGTTTGTTCCAGGGACTTATA 60.264 45.833 0.00 0.00 34.60 0.98
5547 6443 2.203877 AGGTTAGTCGTGGGGGCA 60.204 61.111 0.00 0.00 0.00 5.36
5556 6452 6.622549 CGGATGATGTATTAGGAGGTTAGTC 58.377 44.000 0.00 0.00 0.00 2.59
5601 6497 1.498576 AGAGAGGGCAGAGAGATAGCA 59.501 52.381 0.00 0.00 0.00 3.49
6588 7638 6.768483 TGAGACACTTATTTTGTGATGGAGA 58.232 36.000 0.00 0.00 38.65 3.71
7405 8484 5.473931 ACATCTCATTGAGTACACAGTGTC 58.526 41.667 10.23 2.21 0.00 3.67
7537 8618 7.766278 TGTACAGAAAGGCTATTTCAATCTCTC 59.234 37.037 14.55 3.10 0.00 3.20
7623 8704 1.690219 GATGTGGCCGGTCATCCTCT 61.690 60.000 14.23 0.00 35.71 3.69
7712 8793 1.337823 GCTTTACTCCTTCGTGCAGGA 60.338 52.381 4.68 4.68 41.00 3.86
7737 8818 4.689549 TCCCCTCTCCGTCGCCAA 62.690 66.667 0.00 0.00 0.00 4.52
7827 8908 4.250464 TGTTCATCACCGGACAATACTTC 58.750 43.478 9.46 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.