AutoCloner

Multiple sequence alignment - TraesCS6B01G003900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G003900	chr6B	100.000	3511	0	0	1	3511	2771089	2774599	0.000000e+00	6484.0
1	TraesCS6B01G003900	chr6B	94.535	1903	71	9	1	1875	1134252	1132355	0.000000e+00	2907.0
2	TraesCS6B01G003900	chr6B	95.539	1569	62	5	1891	3458	1132009	1130448	0.000000e+00	2503.0
3	TraesCS6B01G003900	chr6B	98.077	52	1	0	3458	3509	1130075	1130024	1.340000e-14	91.6
4	TraesCS6B01G003900	chrUn	95.029	1569	70	5	1891	3458	329194313	329192752	0.000000e+00	2459.0
5	TraesCS6B01G003900	chrUn	97.945	730	15	0	1146	1875	329195309	329194580	0.000000e+00	1266.0
6	TraesCS6B01G003900	chrUn	94.335	812	44	1	1	812	276415124	276415933	0.000000e+00	1243.0
7	TraesCS6B01G003900	chrUn	94.335	812	44	1	1	812	315809604	315808795	0.000000e+00	1243.0
8	TraesCS6B01G003900	chrUn	93.235	340	23	0	805	1144	276416212	276416551	5.230000e-138	501.0
9	TraesCS6B01G003900	chrUn	93.235	340	23	0	805	1144	315808516	315808177	5.230000e-138	501.0
10	TraesCS6B01G003900	chr1D	86.090	798	103	7	995	1785	254794154	254793358	0.000000e+00	852.0
11	TraesCS6B01G003900	chr1D	87.040	571	73	1	1915	2484	254791563	254790993	0.000000e+00	643.0
12	TraesCS6B01G003900	chr1D	89.333	225	22	2	340	563	96914876	96915099	7.420000e-72	281.0
13	TraesCS6B01G003900	chr1A	85.589	798	107	7	995	1785	327017959	327017163	0.000000e+00	830.0
14	TraesCS6B01G003900	chr1A	85.814	571	80	1	1915	2484	327015734	327015164	3.880000e-169	604.0
15	TraesCS6B01G003900	chr1B	85.518	801	106	8	995	1787	357638340	357639138	0.000000e+00	828.0
16	TraesCS6B01G003900	chr1B	87.197	578	71	2	1910	2484	357641020	357641597	0.000000e+00	654.0
17	TraesCS6B01G003900	chr3B	84.875	562	64	15	11	563	120265740	120266289	6.630000e-152	547.0
18	TraesCS6B01G003900	chr6D	81.926	675	80	25	1	665	456241966	456242608	1.860000e-147	532.0
19	TraesCS6B01G003900	chr6D	80.460	87	13	3	3324	3409	362930224	362930307	2.930000e-06	63.9
20	TraesCS6B01G003900	chr5D	82.583	333	43	12	1	328	378276986	378277308	2.670000e-71	279.0
21	TraesCS6B01G003900	chr3D	89.474	133	11	3	432	563	74492778	74492908	7.800000e-37	165.0
22	TraesCS6B01G003900	chr2D	81.364	220	23	13	498	704	174122140	174122354	2.800000e-36	163.0
23	TraesCS6B01G003900	chr7A	87.075	147	12	4	573	715	221127963	221127820	3.630000e-35	159.0
24	TraesCS6B01G003900	chr6A	86.765	136	9	7	573	704	240386649	240386519	3.650000e-30	143.0
25	TraesCS6B01G003900	chr6A	85.455	55	6	2	3382	3436	503240661	503240713	4.900000e-04	56.5
26	TraesCS6B01G003900	chr4B	74.783	345	73	13	3101	3437	346129514	346129176	3.650000e-30	143.0
27	TraesCS6B01G003900	chr4B	86.047	86	7	5	3130	3214	95064855	95064774	1.740000e-13	87.9
28	TraesCS6B01G003900	chr2B	84.444	135	14	5	573	703	268849782	268849913	3.680000e-25	126.0
29	TraesCS6B01G003900	chr7D	95.238	63	3	0	573	635	172501035	172500973	2.230000e-17	100.0
30	TraesCS6B01G003900	chr5B	81.250	112	18	3	3140	3249	503527383	503527273	1.740000e-13	87.9
31	TraesCS6B01G003900	chr2A	100.000	29	0	0	217	245	277177418	277177390	2.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G003900	chr6B	2771089	2774599	3510	False	6484.000000	6484	100.000000	1	3511	1	chr6B.!!$F1	3510
1	TraesCS6B01G003900	chr6B	1130024	1134252	4228	True	1833.866667	2907	96.050333	1	3509	3	chr6B.!!$R1	3508
2	TraesCS6B01G003900	chrUn	329192752	329195309	2557	True	1862.500000	2459	96.487000	1146	3458	2	chrUn.!!$R2	2312
3	TraesCS6B01G003900	chrUn	276415124	276416551	1427	False	872.000000	1243	93.785000	1	1144	2	chrUn.!!$F1	1143
4	TraesCS6B01G003900	chrUn	315808177	315809604	1427	True	872.000000	1243	93.785000	1	1144	2	chrUn.!!$R1	1143
5	TraesCS6B01G003900	chr1D	254790993	254794154	3161	True	747.500000	852	86.565000	995	2484	2	chr1D.!!$R1	1489
6	TraesCS6B01G003900	chr1A	327015164	327017959	2795	True	717.000000	830	85.701500	995	2484	2	chr1A.!!$R1	1489
7	TraesCS6B01G003900	chr1B	357638340	357641597	3257	False	741.000000	828	86.357500	995	2484	2	chr1B.!!$F1	1489
8	TraesCS6B01G003900	chr3B	120265740	120266289	549	False	547.000000	547	84.875000	11	563	1	chr3B.!!$F1	552
9	TraesCS6B01G003900	chr6D	456241966	456242608	642	False	532.000000	532	81.926000	1	665	1	chr6D.!!$F2	664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
881	1200	0.17899	AAGGTTCACCAACTCCCAGC	60.179	55.0	0.0	0.0	38.89	4.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2621	5255	0.039437	AGCACTACTGACGACAACGG	60.039	55.0	0.0	0.0	44.46	4.44	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
79	80	4.537433	GCGCGGGCAAGGAGAGAT	62.537	66.667	20.76	0.00	39.62	2.75
102	104	2.490270	ATTTCCAGCCGGCAAGCTCT	62.490	55.000	31.54	2.66	42.61	4.09
125	127	4.721111	CGCGGCAAATGCAGGCAA	62.721	61.111	17.07	0.00	44.36	4.52
135	137	2.757099	GCAGGCAACATGGGAGGG	60.757	66.667	0.00	0.00	41.41	4.30
199	204	0.317103	CGCGAGGTGGATTAGACGAG	60.317	60.000	0.00	0.00	0.00	4.18
268	274	1.344763	GGGATTAGGAGTGGATGACGG	59.655	57.143	0.00	0.00	0.00	4.79
306	312	4.098044	GCTAGATAGGTTGTGCACTACTGA	59.902	45.833	26.52	16.87	0.00	3.41
338	364	8.519799	TCTCTCTCTCTCTCTAAATTCCTTTC	57.480	38.462	0.00	0.00	0.00	2.62
405	434	2.038837	GGCTAGGGTGCGTGGAAAC	61.039	63.158	0.00	0.00	0.00	2.78
467	496	3.844943	GCTCAACGAAAGAAGTTTCACCG	60.845	47.826	0.00	0.00	42.06	4.94
513	542	1.136828	ACAAGTTAGGGCACACAGGA	58.863	50.000	0.00	0.00	0.00	3.86
520	549	2.280552	GGGCACACAGGACGGACTA	61.281	63.158	0.00	0.00	0.00	2.59
559	588	5.608449	GCGTCCTACCTTATAAATTGTCCT	58.392	41.667	0.00	0.00	0.00	3.85
666	695	4.219944	GGGTTAGAATGGGTGTTTCTTTCC	59.780	45.833	0.00	0.00	35.19	3.13
729	762	8.265998	AGAAATAAAAACGAAAATCTGCAAACG	58.734	29.630	0.00	0.00	0.00	3.60
766	799	6.372103	GGATCTCAATGGATGATCTCATGAAC	59.628	42.308	0.00	0.00	37.44	3.18
863	1182	4.611984	CGTGTTATTGACGTACGTGAAA	57.388	40.909	28.16	19.61	32.06	2.69
879	1198	1.566703	TGAAAGGTTCACCAACTCCCA	59.433	47.619	0.00	0.00	38.89	4.37
881	1200	0.178990	AAGGTTCACCAACTCCCAGC	60.179	55.000	0.00	0.00	38.89	4.85
939	1258	1.985460	AAATATACACCGGCCGGCCA	61.985	55.000	43.58	28.43	39.32	5.36
982	1301	5.171337	GTCAGATTTACAAACTGCAAACACG	59.829	40.000	0.00	0.00	0.00	4.49
1008	1327	1.693404	CCCCAAATCCCAATGGCTCAT	60.693	52.381	0.00	0.00	35.28	2.90
1091	1422	1.375396	TCGATGGCAACGACAAGGG	60.375	57.895	16.16	0.00	42.51	3.95
1098	1429	1.104577	GCAACGACAAGGGACCCAAA	61.105	55.000	14.60	0.00	0.00	3.28
1233	1564	0.482887	TCATGGAGCCGGAGATCCTA	59.517	55.000	5.05	0.62	34.83	2.94
1323	1654	3.724914	GACGGTGCTAGCTCTGGGC	62.725	68.421	25.19	15.10	42.19	5.36
1535	1866	1.605451	TGGACATGGACGACGAGGT	60.605	57.895	0.00	0.00	0.00	3.85
1584	1915	4.955774	ACGCGGGTGGTGTTCGTC	62.956	66.667	12.47	0.00	35.33	4.20
1791	2122	1.372997	CGCCGGTAAGGATGGATCG	60.373	63.158	1.90	0.00	45.00	3.69
1875	3053	5.653769	AGCGTACACCTTAGTAAACATAGGA	59.346	40.000	7.33	0.00	0.00	2.94
1877	3055	6.625740	GCGTACACCTTAGTAAACATAGGACA	60.626	42.308	7.33	0.00	0.00	4.02
1885	3436	7.873505	CCTTAGTAAACATAGGACATAGGCTTC	59.126	40.741	0.00	0.00	0.00	3.86
1886	3437	6.808321	AGTAAACATAGGACATAGGCTTCA	57.192	37.500	0.00	0.00	0.00	3.02
1887	3438	6.583562	AGTAAACATAGGACATAGGCTTCAC	58.416	40.000	0.00	0.00	0.00	3.18
1888	3439	4.423625	AACATAGGACATAGGCTTCACC	57.576	45.455	0.00	0.00	39.61	4.02
2063	4697	2.106074	CCTGCCGCTACGAATGCAA	61.106	57.895	0.00	0.00	32.58	4.08
2396	5030	2.049627	GCATCTCTCCGGGCCTCATT	62.050	60.000	0.84	0.00	0.00	2.57
2481	5115	4.223032	TCACCCTTATGAAACAGGAGACTC	59.777	45.833	0.00	0.00	40.21	3.36
2507	5141	1.372582	CTTCCGCAAGCAAGCTCATA	58.627	50.000	0.00	0.00	0.00	2.15
2521	5155	3.891049	AGCTCATATGACAGTTTTCCCC	58.109	45.455	0.00	0.00	0.00	4.81
2532	5166	1.017701	GTTTTCCCCGCTACACTCCG	61.018	60.000	0.00	0.00	0.00	4.63
2562	5196	7.597369	GTCATTTGTGTAATTTGTTCCCCTAAC	59.403	37.037	0.00	0.00	38.67	2.34
2583	5217	8.982685	CCTAACATATGTTCTGCATACAAGTAG	58.017	37.037	24.00	10.99	42.28	2.57
2585	5219	8.425577	AACATATGTTCTGCATACAAGTAGAC	57.574	34.615	15.47	0.00	42.28	2.59
2665	5299	6.782000	TGTCAAATTCCTTATTATGATGGGGG	59.218	38.462	0.00	0.00	0.00	5.40
2712	5346	4.809193	TCATGTACCAGGCTCTTATCTCT	58.191	43.478	0.00	0.00	0.00	3.10
2774	5408	5.539048	CCTAACCCGGTAATAGAGAATGTG	58.461	45.833	0.00	0.00	0.00	3.21
2961	5596	2.559668	ACATCCAACACCATTGCTCAAG	59.440	45.455	0.00	0.00	0.00	3.02
2975	5610	2.097825	GCTCAAGCCCATCATTTCAGT	58.902	47.619	0.00	0.00	34.31	3.41
2982	5617	2.423947	GCCCATCATTTCAGTCTCCCAT	60.424	50.000	0.00	0.00	0.00	4.00
2983	5618	3.907221	CCCATCATTTCAGTCTCCCATT	58.093	45.455	0.00	0.00	0.00	3.16
2984	5619	4.689705	GCCCATCATTTCAGTCTCCCATTA	60.690	45.833	0.00	0.00	0.00	1.90
2985	5620	5.638133	CCCATCATTTCAGTCTCCCATTAT	58.362	41.667	0.00	0.00	0.00	1.28
3013	5648	7.516198	AATAAACTCAGAGATTGCACAAGTT	57.484	32.000	3.79	0.00	0.00	2.66
3068	5703	4.096833	CACATCATGTTCCAAATCCGTCAT	59.903	41.667	0.00	0.00	0.00	3.06
3113	5748	0.921166	TGACATGATCATGGGGTGCT	59.079	50.000	33.31	15.87	42.91	4.40
3127	5762	2.101415	GGGGTGCTGAATAAGGAAATGC	59.899	50.000	0.00	0.00	0.00	3.56
3160	5795	5.379187	ACAAAACCGGTAACAAGGATAACT	58.621	37.500	8.00	0.00	0.00	2.24
3251	5886	9.903682	CTATCATGAACCAAATGGAAATGTATC	57.096	33.333	6.42	0.00	38.94	2.24
3252	5887	6.794374	TCATGAACCAAATGGAAATGTATCG	58.206	36.000	6.42	0.00	38.94	2.92
3278	5913	2.943036	AAAGTCTCGCCTGGGTTTTA	57.057	45.000	0.00	0.00	0.00	1.52
3282	5917	3.870274	AGTCTCGCCTGGGTTTTATAAC	58.130	45.455	0.00	0.00	0.00	1.89
3289	5924	4.082463	CGCCTGGGTTTTATAACATTGTGT	60.082	41.667	0.00	0.00	35.92	3.72
3343	5978	6.288294	CAGGTATTGATTATTGACCGGAAGA	58.712	40.000	9.46	0.00	35.24	2.87
3395	6030	6.995686	TGAACTTGTATGGTCACACACTTAAT	59.004	34.615	0.00	0.00	0.00	1.40
3451	6086	8.697507	AAAGGAGAATATGAGAACAGTTTTGT	57.302	30.769	0.00	0.00	39.87	2.83
3453	6088	9.793259	AAGGAGAATATGAGAACAGTTTTGTAA	57.207	29.630	0.00	0.00	36.23	2.41
3454	6089	9.965902	AGGAGAATATGAGAACAGTTTTGTAAT	57.034	29.630	0.00	0.00	36.23	1.89
3469	6476	0.804544	GTAATACCTCGCACGCAGCA	60.805	55.000	0.00	0.00	46.13	4.41
3509	6516	2.302733	CCCAGGCAAGCCAATAAAAAGT	59.697	45.455	14.40	0.00	38.92	2.66
3510	6517	3.328505	CCAGGCAAGCCAATAAAAAGTG	58.671	45.455	14.40	0.00	38.92	3.16

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
20	21	2.324330	CGTGTCTCATGGCCGCAAA	61.324	57.895	0.00	0.00	0.00	3.68
78	79	0.550914	TTGCCGGCTGGAAATCCTAT	59.449	50.000	29.70	0.00	37.49	2.57
79	80	0.107214	CTTGCCGGCTGGAAATCCTA	60.107	55.000	29.70	0.00	37.49	2.94
102	104	4.495336	GCATTTGCCGCGCCATCA	62.495	61.111	0.00	0.00	34.31	3.07
115	117	0.974010	CCTCCCATGTTGCCTGCATT	60.974	55.000	0.00	0.00	0.00	3.56
125	127	3.083997	GACTCCGCCCTCCCATGT	61.084	66.667	0.00	0.00	0.00	3.21
135	137	2.105128	CCATCTCCACGACTCCGC	59.895	66.667	0.00	0.00	39.95	5.54
191	196	1.001248	CCCACTCCCCCTCGTCTAA	59.999	63.158	0.00	0.00	0.00	2.10
192	197	2.687902	CCCACTCCCCCTCGTCTA	59.312	66.667	0.00	0.00	0.00	2.59
199	204	3.489513	CGATTCCCCCACTCCCCC	61.490	72.222	0.00	0.00	0.00	5.40
306	312	8.593945	ATTTAGAGAGAGAGAGAGAACAACAT	57.406	34.615	0.00	0.00	0.00	2.71
354	383	6.241645	TCCATCCTTCTCTTTTTCTTCTTCC	58.758	40.000	0.00	0.00	0.00	3.46
429	458	9.647797	TTTCGTTGAGCTAAGTATAAATCTTCA	57.352	29.630	0.00	0.00	0.00	3.02
467	496	9.780413	GAGTTTGAATTCAACTCTTCCATATTC	57.220	33.333	26.51	13.18	35.28	1.75
526	555	1.820519	AGGTAGGACGCGAAACACATA	59.179	47.619	15.93	0.00	0.00	2.29
581	610	7.661040	ACCAGAAAATGTGTAATCAAAAGGAG	58.339	34.615	0.00	0.00	0.00	3.69
679	708	2.603915	GCAAAAAGCCGTGCATTGT	58.396	47.368	0.00	0.00	40.58	2.71
729	762	7.083875	TCCATTGAGATCCGTGTAAATTTTC	57.916	36.000	0.00	0.00	0.00	2.29
766	799	6.815641	AGTCTTACTATGAGTTTGATGCTGTG	59.184	38.462	0.00	0.00	0.00	3.66
861	1180	1.754201	GCTGGGAGTTGGTGAACCTTT	60.754	52.381	0.37	0.00	36.82	3.11
863	1182	1.456287	GCTGGGAGTTGGTGAACCT	59.544	57.895	0.37	0.00	36.82	3.50
879	1198	1.355381	TCACCAATTCACCATCTGGCT	59.645	47.619	0.00	0.00	39.32	4.75
881	1200	3.623703	TCATCACCAATTCACCATCTGG	58.376	45.455	0.00	0.00	42.17	3.86
907	1226	4.102681	GGTGTATATTTGTAGGAGGGCACT	59.897	45.833	0.00	0.00	0.00	4.40
939	1258	1.492764	CCCTACGTGTTCAGGGGTAT	58.507	55.000	12.67	0.00	46.83	2.73
982	1301	2.041701	CATTGGGATTTGGGGATGGAC	58.958	52.381	0.00	0.00	0.00	4.02
1008	1327	1.080772	CTGTGCCGTAGCGAGAACA	60.081	57.895	0.00	0.00	44.31	3.18
1091	1422	3.047877	CGTGACGGGCTTTGGGTC	61.048	66.667	0.00	0.00	0.00	4.46
1233	1564	4.379243	CCTGTGAAGAGCCGGCGT	62.379	66.667	23.20	10.14	0.00	5.68
1584	1915	2.094906	TGTTGGGTTCGACATAGTCTCG	60.095	50.000	0.00	0.00	32.62	4.04
1791	2122	1.006102	CGAGTACGGGATGGGCATC	60.006	63.158	0.00	0.00	37.11	3.91
1885	3436	3.865745	CCGTCAATAGCTTCACTAAGGTG	59.134	47.826	0.00	0.00	43.18	4.00
1886	3437	3.767673	TCCGTCAATAGCTTCACTAAGGT	59.232	43.478	0.00	0.00	45.22	3.50
1887	3438	4.142138	ACTCCGTCAATAGCTTCACTAAGG	60.142	45.833	0.00	0.00	33.57	2.69
1888	3439	5.000012	ACTCCGTCAATAGCTTCACTAAG	58.000	43.478	0.00	0.00	33.57	2.18
1889	3440	5.047590	TCAACTCCGTCAATAGCTTCACTAA	60.048	40.000	0.00	0.00	33.57	2.24
1937	4571	2.359230	GCTTTCACCAGGCTCGCT	60.359	61.111	0.00	0.00	0.00	4.93
2384	5018	3.479203	ATGCGAATGAGGCCCGGA	61.479	61.111	0.73	0.00	0.00	5.14
2396	5030	0.615850	TGTACCCAATGGACATGCGA	59.384	50.000	0.00	0.00	34.81	5.10
2507	5141	1.349688	TGTAGCGGGGAAAACTGTCAT	59.650	47.619	0.00	0.00	0.00	3.06
2521	5155	2.867333	ATGACGTGCGGAGTGTAGCG	62.867	60.000	0.00	0.00	35.87	4.26
2532	5166	5.108027	GGAACAAATTACACAAATGACGTGC	60.108	40.000	0.00	0.00	37.93	5.34
2562	5196	7.212976	AGGTCTACTTGTATGCAGAACATATG	58.787	38.462	0.00	0.00	43.11	1.78
2608	5242	6.592166	TGACGACAACGGAACAAATTATAAC	58.408	36.000	0.00	0.00	44.46	1.89
2621	5255	0.039437	AGCACTACTGACGACAACGG	60.039	55.000	0.00	0.00	44.46	4.44
2665	5299	7.838771	AATAATCCGAGTACACAAAGGTTAC	57.161	36.000	0.00	0.00	0.00	2.50
2712	5346	3.630769	CACGCCACACTTCCTATCTAGTA	59.369	47.826	0.00	0.00	0.00	1.82
2774	5408	2.167900	AGCTGTTACCGGGTTGAGATAC	59.832	50.000	4.31	0.00	0.00	2.24
2883	5518	6.769512	ACCATAAGGATAAGTGTCGCATTAT	58.230	36.000	0.00	0.00	38.69	1.28
2961	5596	1.064463	TGGGAGACTGAAATGATGGGC	60.064	52.381	0.00	0.00	0.00	5.36
2985	5620	9.897744	CTTGTGCAATCTCTGAGTTTATTTTTA	57.102	29.630	4.32	0.00	0.00	1.52
3052	5687	5.720371	AAATGAATGACGGATTTGGAACA	57.280	34.783	0.00	0.00	0.00	3.18
3053	5688	9.796120	TTATAAAATGAATGACGGATTTGGAAC	57.204	29.630	0.00	0.00	0.00	3.62
3092	5727	1.682702	GCACCCCATGATCATGTCACA	60.683	52.381	29.23	0.00	40.28	3.58
3113	5748	6.567687	TTTTGTCTCGCATTTCCTTATTCA	57.432	33.333	0.00	0.00	0.00	2.57
3127	5762	3.139603	ACCGGTTTTGTTTTTGTCTCG	57.860	42.857	0.00	0.00	0.00	4.04
3160	5795	5.243507	AGCAACAACATGATCACAATACCAA	59.756	36.000	0.00	0.00	0.00	3.67
3208	5843	5.968676	TGATAGCTAATAAACCCAGGTGT	57.031	39.130	0.00	0.00	0.00	4.16
3209	5844	6.533730	TCATGATAGCTAATAAACCCAGGTG	58.466	40.000	0.00	0.00	0.00	4.00
3210	5845	6.763715	TCATGATAGCTAATAAACCCAGGT	57.236	37.500	0.00	0.00	0.00	4.00
3251	5886	3.897819	GGCGAGACTTTTATTGCCG	57.102	52.632	0.00	0.00	36.28	5.69
3252	5887	1.401905	CCAGGCGAGACTTTTATTGCC	59.598	52.381	0.00	0.00	45.06	4.52
3282	5917	7.420002	CAATACTGATTCCCACATACACAATG	58.580	38.462	0.00	0.00	41.74	2.82
3289	5924	5.397447	GGACACCAATACTGATTCCCACATA	60.397	44.000	0.00	0.00	0.00	2.29
3322	5957	9.665264	GAAAATCTTCCGGTCAATAATCAATAC	57.335	33.333	0.00	0.00	0.00	1.89
3343	5978	3.992943	TGTAGACATGACCCGGAAAAT	57.007	42.857	0.73	0.00	0.00	1.82
3395	6030	5.971763	AGTTTTGCATCAAACCACTAAACA	58.028	33.333	9.81	0.00	32.79	2.83
3449	6084	0.804544	GCTGCGTGCGAGGTATTACA	60.805	55.000	0.00	0.00	0.00	2.41
3450	6085	0.804544	TGCTGCGTGCGAGGTATTAC	60.805	55.000	0.00	0.00	46.63	1.89
3451	6086	0.527600	CTGCTGCGTGCGAGGTATTA	60.528	55.000	0.00	0.00	46.63	0.98
3453	6088	2.202797	CTGCTGCGTGCGAGGTAT	60.203	61.111	0.00	0.00	46.63	2.73
3454	6089	3.342370	CTCTGCTGCGTGCGAGGTA	62.342	63.158	0.00	0.00	46.63	3.08
3455	6090	4.731612	CTCTGCTGCGTGCGAGGT	62.732	66.667	0.00	0.00	46.63	3.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.