Multiple sequence alignment - TraesCS6B01G003800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G003800 chr6B 100.000 4559 0 0 1 4559 2716048 2720606 0.000000e+00 8419.0
1 TraesCS6B01G003800 chr6B 83.935 3187 491 17 394 3567 64689606 64686428 0.000000e+00 3029.0
2 TraesCS6B01G003800 chr6B 82.777 3205 504 39 399 3575 65090767 65087583 0.000000e+00 2817.0
3 TraesCS6B01G003800 chr6B 92.532 1339 92 7 1 1335 2694137 2695471 0.000000e+00 1912.0
4 TraesCS6B01G003800 chr6B 80.992 242 8 8 1 242 2860533 2860736 1.700000e-34 158.0
5 TraesCS6B01G003800 chr6B 91.111 45 4 0 26 70 15279346 15279302 1.370000e-05 62.1
6 TraesCS6B01G003800 chr3B 93.377 3941 242 11 191 4117 814450123 814446188 0.000000e+00 5814.0
7 TraesCS6B01G003800 chr3B 82.139 3169 532 27 343 3490 44787473 44784318 0.000000e+00 2686.0
8 TraesCS6B01G003800 chr3B 90.698 172 16 0 4144 4315 814436808 814436637 3.550000e-56 230.0
9 TraesCS6B01G003800 chr3B 89.266 177 19 0 1 177 814451014 814450838 5.940000e-54 222.0
10 TraesCS6B01G003800 chr3B 89.431 123 5 1 4302 4416 814435271 814435149 1.020000e-31 148.0
11 TraesCS6B01G003800 chr6D 83.772 3192 463 26 401 3576 424586 421434 0.000000e+00 2974.0
12 TraesCS6B01G003800 chr6D 92.308 117 9 0 4443 4559 391685349 391685233 2.820000e-37 167.0
13 TraesCS6B01G003800 chrUn 83.182 3199 491 27 394 3568 101627227 101630402 0.000000e+00 2883.0
14 TraesCS6B01G003800 chrUn 83.020 2821 449 21 772 3568 94836793 94839607 0.000000e+00 2529.0
15 TraesCS6B01G003800 chrUn 95.775 71 3 0 1 71 307325696 307325626 1.040000e-21 115.0
16 TraesCS6B01G003800 chr4A 82.880 3201 509 34 389 3566 657097166 657100350 0.000000e+00 2839.0
17 TraesCS6B01G003800 chr2B 82.525 3256 521 40 267 3494 734395934 734399169 0.000000e+00 2817.0
18 TraesCS6B01G003800 chr2B 84.034 238 26 6 4144 4370 4016816 4017052 7.680000e-53 219.0
19 TraesCS6B01G003800 chr2B 84.255 235 25 6 4147 4370 4286322 4286555 7.680000e-53 219.0
20 TraesCS6B01G003800 chr2B 84.034 238 26 6 4144 4370 4379705 4379941 7.680000e-53 219.0
21 TraesCS6B01G003800 chr2B 83.613 238 27 6 4144 4370 4427546 4427782 3.570000e-51 213.0
22 TraesCS6B01G003800 chr2B 91.453 117 10 0 4443 4559 165248012 165248128 1.310000e-35 161.0
23 TraesCS6B01G003800 chr2B 82.317 164 22 3 4213 4369 36454966 36455129 7.960000e-28 135.0
24 TraesCS6B01G003800 chr5D 82.615 3204 518 26 389 3576 369018941 369022121 0.000000e+00 2795.0
25 TraesCS6B01G003800 chr5D 89.744 117 12 0 4443 4559 447303362 447303246 2.840000e-32 150.0
26 TraesCS6B01G003800 chr5D 100.000 28 0 0 4420 4447 9230379 9230352 8.000000e-03 52.8
27 TraesCS6B01G003800 chr5B 82.609 3197 518 27 399 3576 35548886 35545709 0.000000e+00 2789.0
28 TraesCS6B01G003800 chr5B 91.964 112 9 0 4443 4554 19112188 19112299 1.700000e-34 158.0
29 TraesCS6B01G003800 chr3D 82.461 3170 518 31 343 3490 26587022 26583869 0.000000e+00 2739.0
30 TraesCS6B01G003800 chr3D 89.565 115 12 0 4443 4557 200432622 200432508 3.680000e-31 147.0
31 TraesCS6B01G003800 chr7D 81.935 3255 543 35 342 3575 9182433 9185663 0.000000e+00 2712.0
32 TraesCS6B01G003800 chr3A 82.355 3134 515 30 385 3496 36662509 36659392 0.000000e+00 2689.0
33 TraesCS6B01G003800 chr1B 79.121 637 119 9 240 864 2915978 2916612 1.170000e-115 427.0
34 TraesCS6B01G003800 chr1B 92.308 117 9 0 4443 4559 543087407 543087523 2.820000e-37 167.0
35 TraesCS6B01G003800 chr4B 91.453 117 10 0 4443 4559 66606331 66606215 1.310000e-35 161.0
36 TraesCS6B01G003800 chr4B 84.242 165 20 1 4213 4371 315699402 315699238 6.110000e-34 156.0
37 TraesCS6B01G003800 chr1A 91.453 117 10 0 4443 4559 14598671 14598787 1.310000e-35 161.0
38 TraesCS6B01G003800 chr1D 91.892 111 9 0 4444 4554 75907601 75907491 6.110000e-34 156.0
39 TraesCS6B01G003800 chr1D 100.000 30 0 0 4418 4447 75907670 75907641 6.370000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G003800 chr6B 2716048 2720606 4558 False 8419 8419 100.0000 1 4559 1 chr6B.!!$F2 4558
1 TraesCS6B01G003800 chr6B 64686428 64689606 3178 True 3029 3029 83.9350 394 3567 1 chr6B.!!$R2 3173
2 TraesCS6B01G003800 chr6B 65087583 65090767 3184 True 2817 2817 82.7770 399 3575 1 chr6B.!!$R3 3176
3 TraesCS6B01G003800 chr6B 2694137 2695471 1334 False 1912 1912 92.5320 1 1335 1 chr6B.!!$F1 1334
4 TraesCS6B01G003800 chr3B 814446188 814451014 4826 True 3018 5814 91.3215 1 4117 2 chr3B.!!$R3 4116
5 TraesCS6B01G003800 chr3B 44784318 44787473 3155 True 2686 2686 82.1390 343 3490 1 chr3B.!!$R1 3147
6 TraesCS6B01G003800 chr6D 421434 424586 3152 True 2974 2974 83.7720 401 3576 1 chr6D.!!$R1 3175
7 TraesCS6B01G003800 chrUn 101627227 101630402 3175 False 2883 2883 83.1820 394 3568 1 chrUn.!!$F2 3174
8 TraesCS6B01G003800 chrUn 94836793 94839607 2814 False 2529 2529 83.0200 772 3568 1 chrUn.!!$F1 2796
9 TraesCS6B01G003800 chr4A 657097166 657100350 3184 False 2839 2839 82.8800 389 3566 1 chr4A.!!$F1 3177
10 TraesCS6B01G003800 chr2B 734395934 734399169 3235 False 2817 2817 82.5250 267 3494 1 chr2B.!!$F7 3227
11 TraesCS6B01G003800 chr5D 369018941 369022121 3180 False 2795 2795 82.6150 389 3576 1 chr5D.!!$F1 3187
12 TraesCS6B01G003800 chr5B 35545709 35548886 3177 True 2789 2789 82.6090 399 3576 1 chr5B.!!$R1 3177
13 TraesCS6B01G003800 chr3D 26583869 26587022 3153 True 2739 2739 82.4610 343 3490 1 chr3D.!!$R1 3147
14 TraesCS6B01G003800 chr7D 9182433 9185663 3230 False 2712 2712 81.9350 342 3575 1 chr7D.!!$F1 3233
15 TraesCS6B01G003800 chr3A 36659392 36662509 3117 True 2689 2689 82.3550 385 3496 1 chr3A.!!$R1 3111
16 TraesCS6B01G003800 chr1B 2915978 2916612 634 False 427 427 79.1210 240 864 1 chr1B.!!$F1 624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
799 1517 1.300963 GCCATCCCAACTGAGCTCA 59.699 57.895 17.19 17.19 0.00 4.26 F
1230 1955 0.252375 TTAGGGGTTACGTGCCTCCT 60.252 55.000 11.88 11.88 33.37 3.69 F
2534 3279 2.050144 AGTGAACTTGCTTGGGAGAGA 58.950 47.619 0.00 0.00 0.00 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1832 2566 0.320073 TGCCAAACTACCGACTTCCG 60.320 55.000 0.0 0.0 38.18 4.30 R
2990 3759 1.485066 TCCCCTCGCCTGTATTTTCTC 59.515 52.381 0.0 0.0 0.00 2.87 R
4446 5231 0.042731 AAGGGACGGAAGAGGGATGA 59.957 55.000 0.0 0.0 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
799 1517 1.300963 GCCATCCCAACTGAGCTCA 59.699 57.895 17.19 17.19 0.00 4.26
850 1568 2.609459 ACACTGAGAAACAACAGCTTCG 59.391 45.455 0.00 0.00 37.61 3.79
1097 1822 3.914984 CGGGTGATATCGGAAGCAT 57.085 52.632 0.00 0.00 0.00 3.79
1142 1867 3.181493 GCCTTGATTCGCAATCACTTCAT 60.181 43.478 10.01 0.00 46.90 2.57
1230 1955 0.252375 TTAGGGGTTACGTGCCTCCT 60.252 55.000 11.88 11.88 33.37 3.69
1282 2014 5.499004 ACTGAGTTTGGCTTACAATAGGA 57.501 39.130 0.00 0.00 39.21 2.94
1468 2200 2.832838 TCTCTGGGAGTATTCCTGCAA 58.167 47.619 4.04 0.00 43.49 4.08
1560 2292 5.423610 AGAGAGCATTGGTAAGCTAGAGAAA 59.576 40.000 0.00 0.00 42.04 2.52
1599 2333 6.884295 CCTTGTCAAATAATAGGTTGTCTGGA 59.116 38.462 0.00 0.00 0.00 3.86
1641 2375 6.070656 AGGGAATCTTTCACAACTGATTTCA 58.929 36.000 0.00 0.00 34.83 2.69
1778 2512 5.669164 AGAGAGATCTTCAAACTACCCAC 57.331 43.478 0.00 0.00 0.00 4.61
1832 2566 2.092375 CCCTTTCTGGACCCATTCCTAC 60.092 54.545 0.00 0.00 46.10 3.18
1878 2612 7.934855 TCTTAACGAACTTACTCTATCAGGT 57.065 36.000 0.00 0.00 0.00 4.00
2222 2964 9.220767 AGGTGTTTTCAGAAATATCACTTACTC 57.779 33.333 17.79 5.54 0.00 2.59
2361 3106 2.500098 TCTAGCGGTAGTTGGAGCAATT 59.500 45.455 20.32 0.00 0.00 2.32
2441 3186 5.051891 AGCAAGATGACATTAGCACAAAC 57.948 39.130 9.42 0.00 0.00 2.93
2443 3188 5.091431 GCAAGATGACATTAGCACAAACTC 58.909 41.667 0.00 0.00 0.00 3.01
2534 3279 2.050144 AGTGAACTTGCTTGGGAGAGA 58.950 47.619 0.00 0.00 0.00 3.10
2584 3329 5.427036 TTTGGACACCGAAGAATTAACAC 57.573 39.130 0.00 0.00 0.00 3.32
2990 3759 3.407424 TGGCATATCAAGGATCCTTCG 57.593 47.619 24.67 18.57 33.42 3.79
3255 4036 3.012518 AGAAGGCACATTCCAAGATTCG 58.987 45.455 0.00 0.00 0.00 3.34
3339 4120 2.048023 AATGTGGCTGCACATCGGG 61.048 57.895 14.83 0.00 44.19 5.14
3364 4148 6.199531 GCACCATGATAACATTGCAAGTATTG 59.800 38.462 4.94 0.05 41.28 1.90
3581 4365 4.448210 ACAAGCTAGAACAAGACCGAAAA 58.552 39.130 0.00 0.00 0.00 2.29
3584 4368 4.894784 AGCTAGAACAAGACCGAAAATGA 58.105 39.130 0.00 0.00 0.00 2.57
3587 4371 7.275920 AGCTAGAACAAGACCGAAAATGATAT 58.724 34.615 0.00 0.00 0.00 1.63
3625 4409 9.202273 GCTTATAGGATCTCAGACAAACAATAG 57.798 37.037 0.00 0.00 0.00 1.73
3630 4414 7.855375 AGGATCTCAGACAAACAATAGAATCA 58.145 34.615 0.00 0.00 0.00 2.57
3719 4503 9.554724 TTTTCATGAAGAAATAACATTCGTAGC 57.445 29.630 8.41 0.00 45.15 3.58
3733 4517 1.787057 CGTAGCGGTGTGGGCAAAAA 61.787 55.000 0.00 0.00 0.00 1.94
3770 4554 6.746822 CCAAAATGCTTCCAAAAACACTTTTC 59.253 34.615 0.00 0.00 32.24 2.29
3779 4563 5.104982 TCCAAAAACACTTTTCTGGAGCATT 60.105 36.000 0.00 0.00 36.17 3.56
3780 4564 5.006941 CCAAAAACACTTTTCTGGAGCATTG 59.993 40.000 0.00 0.00 35.08 2.82
3820 4604 5.297776 CCCACACCTCTATGAATGTGATTTC 59.702 44.000 4.83 0.00 44.20 2.17
3962 4746 1.068741 GGGATCACATACTCCACGTCC 59.931 57.143 0.00 0.00 32.90 4.79
3977 4761 3.181524 CCACGTCCGAACAACACATAATC 60.182 47.826 0.00 0.00 0.00 1.75
3997 4782 3.968265 TCCTTGTTGGAATTCCATCCTC 58.032 45.455 27.53 17.37 46.97 3.71
4002 4787 3.282885 GTTGGAATTCCATCCTCAGGAC 58.717 50.000 27.53 15.86 46.97 3.85
4010 4795 1.407936 CATCCTCAGGACCGATCACT 58.592 55.000 0.00 0.00 32.98 3.41
4018 4803 2.093500 CAGGACCGATCACTCCAAATCA 60.093 50.000 8.11 0.00 0.00 2.57
4019 4804 2.093447 AGGACCGATCACTCCAAATCAC 60.093 50.000 8.11 0.00 0.00 3.06
4032 4817 0.162933 AAATCACACTAACGCACGCG 59.837 50.000 10.36 10.36 46.03 6.01
4033 4818 2.222953 AATCACACTAACGCACGCGC 62.223 55.000 12.02 0.00 44.19 6.86
4034 4819 3.697444 CACACTAACGCACGCGCA 61.697 61.111 12.02 0.00 44.19 6.09
4079 4864 4.082245 CCATTGTCGTGCCCTTATTTTTCT 60.082 41.667 0.00 0.00 0.00 2.52
4090 4875 9.705290 GTGCCCTTATTTTTCTTCTTTATTTCA 57.295 29.630 0.00 0.00 0.00 2.69
4117 4902 5.694910 TCTCGTTTTTCTCTCATGGTGTTAC 59.305 40.000 0.00 0.00 0.00 2.50
4118 4903 5.361427 TCGTTTTTCTCTCATGGTGTTACA 58.639 37.500 0.00 0.00 0.00 2.41
4119 4904 5.465390 TCGTTTTTCTCTCATGGTGTTACAG 59.535 40.000 0.00 0.00 0.00 2.74
4120 4905 5.465390 CGTTTTTCTCTCATGGTGTTACAGA 59.535 40.000 0.00 0.00 0.00 3.41
4121 4906 6.018262 CGTTTTTCTCTCATGGTGTTACAGAA 60.018 38.462 0.00 0.00 0.00 3.02
4122 4907 6.861065 TTTTCTCTCATGGTGTTACAGAAC 57.139 37.500 0.00 0.00 36.00 3.01
4123 4908 5.808366 TTCTCTCATGGTGTTACAGAACT 57.192 39.130 0.00 0.00 36.45 3.01
4124 4909 5.392767 TCTCTCATGGTGTTACAGAACTC 57.607 43.478 0.00 0.00 36.45 3.01
4125 4910 4.832823 TCTCTCATGGTGTTACAGAACTCA 59.167 41.667 0.00 0.00 36.45 3.41
4126 4911 4.883083 TCTCATGGTGTTACAGAACTCAC 58.117 43.478 0.00 0.00 36.45 3.51
4127 4912 3.649073 TCATGGTGTTACAGAACTCACG 58.351 45.455 0.00 0.00 36.45 4.35
4128 4913 1.860676 TGGTGTTACAGAACTCACGC 58.139 50.000 0.00 0.00 36.45 5.34
4129 4914 1.137282 TGGTGTTACAGAACTCACGCA 59.863 47.619 0.00 0.00 36.45 5.24
4130 4915 2.206750 GGTGTTACAGAACTCACGCAA 58.793 47.619 0.00 0.00 36.45 4.85
4131 4916 2.806244 GGTGTTACAGAACTCACGCAAT 59.194 45.455 0.00 0.00 36.45 3.56
4132 4917 3.363970 GGTGTTACAGAACTCACGCAATG 60.364 47.826 0.00 0.00 36.45 2.82
4133 4918 3.493129 GTGTTACAGAACTCACGCAATGA 59.507 43.478 0.00 0.00 36.45 2.57
4134 4919 4.152402 GTGTTACAGAACTCACGCAATGAT 59.848 41.667 0.00 0.00 36.48 2.45
4135 4920 4.152223 TGTTACAGAACTCACGCAATGATG 59.848 41.667 0.00 0.00 36.48 3.07
4136 4921 4.957199 GTTACAGAACTCACGCAATGATGC 60.957 45.833 0.00 0.00 39.66 3.91
4137 4922 7.311088 GTTACAGAACTCACGCAATGATGCA 62.311 44.000 1.42 0.00 41.44 3.96
4138 4923 8.685536 GTTACAGAACTCACGCAATGATGCAA 62.686 42.308 0.00 0.00 41.44 4.08
4149 4934 4.926860 CAATGATGCAACTTCTACGTCA 57.073 40.909 0.00 0.00 34.09 4.35
4150 4935 5.281693 CAATGATGCAACTTCTACGTCAA 57.718 39.130 0.00 0.00 33.35 3.18
4151 4936 5.319139 CAATGATGCAACTTCTACGTCAAG 58.681 41.667 0.00 0.00 33.35 3.02
4152 4937 3.325870 TGATGCAACTTCTACGTCAAGG 58.674 45.455 10.94 0.00 0.00 3.61
4153 4938 3.006430 TGATGCAACTTCTACGTCAAGGA 59.994 43.478 10.94 0.00 0.00 3.36
4154 4939 2.750948 TGCAACTTCTACGTCAAGGAC 58.249 47.619 10.94 0.00 0.00 3.85
4155 4940 2.067013 GCAACTTCTACGTCAAGGACC 58.933 52.381 10.94 0.00 0.00 4.46
4156 4941 2.685100 CAACTTCTACGTCAAGGACCC 58.315 52.381 10.94 0.00 0.00 4.46
4157 4942 2.005370 ACTTCTACGTCAAGGACCCA 57.995 50.000 10.94 0.00 0.00 4.51
4158 4943 1.893801 ACTTCTACGTCAAGGACCCAG 59.106 52.381 10.94 0.00 0.00 4.45
4159 4944 0.606604 TTCTACGTCAAGGACCCAGC 59.393 55.000 0.00 0.00 0.00 4.85
4160 4945 0.251653 TCTACGTCAAGGACCCAGCT 60.252 55.000 0.00 0.00 0.00 4.24
4161 4946 1.005097 TCTACGTCAAGGACCCAGCTA 59.995 52.381 0.00 0.00 0.00 3.32
4162 4947 1.822990 CTACGTCAAGGACCCAGCTAA 59.177 52.381 0.00 0.00 0.00 3.09
4163 4948 0.320697 ACGTCAAGGACCCAGCTAAC 59.679 55.000 0.00 0.00 0.00 2.34
4164 4949 0.391263 CGTCAAGGACCCAGCTAACC 60.391 60.000 0.00 0.00 0.00 2.85
4165 4950 0.984995 GTCAAGGACCCAGCTAACCT 59.015 55.000 0.00 0.00 0.00 3.50
4166 4951 2.185387 GTCAAGGACCCAGCTAACCTA 58.815 52.381 0.00 0.00 32.06 3.08
4167 4952 2.093606 GTCAAGGACCCAGCTAACCTAC 60.094 54.545 0.00 0.00 32.06 3.18
4168 4953 1.209747 CAAGGACCCAGCTAACCTACC 59.790 57.143 0.00 0.00 32.06 3.18
4169 4954 0.686769 AGGACCCAGCTAACCTACCG 60.687 60.000 0.00 0.00 0.00 4.02
4170 4955 1.683418 GGACCCAGCTAACCTACCGG 61.683 65.000 0.00 0.00 0.00 5.28
4171 4956 0.685458 GACCCAGCTAACCTACCGGA 60.685 60.000 9.46 0.00 0.00 5.14
4172 4957 0.974525 ACCCAGCTAACCTACCGGAC 60.975 60.000 9.46 0.00 0.00 4.79
4173 4958 1.683418 CCCAGCTAACCTACCGGACC 61.683 65.000 9.46 0.00 0.00 4.46
4174 4959 1.436336 CAGCTAACCTACCGGACCG 59.564 63.158 9.46 6.99 0.00 4.79
4175 4960 1.000396 AGCTAACCTACCGGACCGT 60.000 57.895 9.46 3.65 0.00 4.83
4176 4961 1.140375 GCTAACCTACCGGACCGTG 59.860 63.158 9.46 6.98 0.00 4.94
4177 4962 1.598701 GCTAACCTACCGGACCGTGT 61.599 60.000 9.46 12.72 0.00 4.49
4178 4963 0.453390 CTAACCTACCGGACCGTGTC 59.547 60.000 9.46 0.00 0.00 3.67
4195 4980 3.767278 GTGTCCTACACGTACATCTTCC 58.233 50.000 0.00 0.00 39.53 3.46
4196 4981 3.192001 GTGTCCTACACGTACATCTTCCA 59.808 47.826 0.00 0.00 39.53 3.53
4197 4982 3.192001 TGTCCTACACGTACATCTTCCAC 59.808 47.826 0.00 0.00 0.00 4.02
4198 4983 2.756760 TCCTACACGTACATCTTCCACC 59.243 50.000 0.00 0.00 0.00 4.61
4199 4984 2.494471 CCTACACGTACATCTTCCACCA 59.506 50.000 0.00 0.00 0.00 4.17
4200 4985 3.056393 CCTACACGTACATCTTCCACCAA 60.056 47.826 0.00 0.00 0.00 3.67
4201 4986 2.762745 ACACGTACATCTTCCACCAAC 58.237 47.619 0.00 0.00 0.00 3.77
4202 4987 2.103432 ACACGTACATCTTCCACCAACA 59.897 45.455 0.00 0.00 0.00 3.33
4203 4988 2.478894 CACGTACATCTTCCACCAACAC 59.521 50.000 0.00 0.00 0.00 3.32
4204 4989 2.103432 ACGTACATCTTCCACCAACACA 59.897 45.455 0.00 0.00 0.00 3.72
4205 4990 3.135225 CGTACATCTTCCACCAACACAA 58.865 45.455 0.00 0.00 0.00 3.33
4206 4991 3.059188 CGTACATCTTCCACCAACACAAC 60.059 47.826 0.00 0.00 0.00 3.32
4207 4992 3.011566 ACATCTTCCACCAACACAACA 57.988 42.857 0.00 0.00 0.00 3.33
4208 4993 3.360867 ACATCTTCCACCAACACAACAA 58.639 40.909 0.00 0.00 0.00 2.83
4209 4994 3.381272 ACATCTTCCACCAACACAACAAG 59.619 43.478 0.00 0.00 0.00 3.16
4210 4995 3.358111 TCTTCCACCAACACAACAAGA 57.642 42.857 0.00 0.00 0.00 3.02
4211 4996 3.897239 TCTTCCACCAACACAACAAGAT 58.103 40.909 0.00 0.00 0.00 2.40
4212 4997 5.042463 TCTTCCACCAACACAACAAGATA 57.958 39.130 0.00 0.00 0.00 1.98
4213 4998 5.063204 TCTTCCACCAACACAACAAGATAG 58.937 41.667 0.00 0.00 0.00 2.08
4214 4999 3.146066 TCCACCAACACAACAAGATAGC 58.854 45.455 0.00 0.00 0.00 2.97
4215 5000 2.228822 CCACCAACACAACAAGATAGCC 59.771 50.000 0.00 0.00 0.00 3.93
4216 5001 2.884012 CACCAACACAACAAGATAGCCA 59.116 45.455 0.00 0.00 0.00 4.75
4217 5002 3.058016 CACCAACACAACAAGATAGCCAG 60.058 47.826 0.00 0.00 0.00 4.85
4218 5003 2.489329 CCAACACAACAAGATAGCCAGG 59.511 50.000 0.00 0.00 0.00 4.45
4219 5004 1.826385 ACACAACAAGATAGCCAGGC 58.174 50.000 1.84 1.84 0.00 4.85
4220 5005 1.073763 ACACAACAAGATAGCCAGGCA 59.926 47.619 15.80 0.00 0.00 4.75
4221 5006 1.470098 CACAACAAGATAGCCAGGCAC 59.530 52.381 15.80 4.61 0.00 5.01
4222 5007 1.073763 ACAACAAGATAGCCAGGCACA 59.926 47.619 15.80 0.17 0.00 4.57
4223 5008 2.161855 CAACAAGATAGCCAGGCACAA 58.838 47.619 15.80 0.00 0.00 3.33
4224 5009 2.119801 ACAAGATAGCCAGGCACAAG 57.880 50.000 15.80 0.37 0.00 3.16
4225 5010 1.352352 ACAAGATAGCCAGGCACAAGT 59.648 47.619 15.80 1.06 0.00 3.16
4226 5011 2.012673 CAAGATAGCCAGGCACAAGTC 58.987 52.381 15.80 3.87 0.00 3.01
4227 5012 0.543749 AGATAGCCAGGCACAAGTCC 59.456 55.000 15.80 0.00 0.00 3.85
4228 5013 0.464554 GATAGCCAGGCACAAGTCCC 60.465 60.000 15.80 0.00 0.00 4.46
4229 5014 1.207488 ATAGCCAGGCACAAGTCCCA 61.207 55.000 15.80 0.00 0.00 4.37
4230 5015 1.841302 TAGCCAGGCACAAGTCCCAG 61.841 60.000 15.80 0.00 0.00 4.45
4231 5016 2.674380 CCAGGCACAAGTCCCAGC 60.674 66.667 0.00 0.00 0.00 4.85
4234 5019 2.674380 GGCACAAGTCCCAGCCAG 60.674 66.667 0.00 0.00 46.26 4.85
4235 5020 2.431683 GCACAAGTCCCAGCCAGA 59.568 61.111 0.00 0.00 0.00 3.86
4236 5021 1.968540 GCACAAGTCCCAGCCAGAC 60.969 63.158 0.00 0.00 34.31 3.51
4237 5022 1.757306 CACAAGTCCCAGCCAGACT 59.243 57.895 0.00 0.00 46.50 3.24
4238 5023 0.321122 CACAAGTCCCAGCCAGACTC 60.321 60.000 1.75 0.00 43.77 3.36
4239 5024 0.764369 ACAAGTCCCAGCCAGACTCA 60.764 55.000 1.75 0.00 43.77 3.41
4240 5025 0.397941 CAAGTCCCAGCCAGACTCAA 59.602 55.000 1.75 0.00 43.77 3.02
4241 5026 0.398318 AAGTCCCAGCCAGACTCAAC 59.602 55.000 1.75 0.00 43.77 3.18
4242 5027 0.472734 AGTCCCAGCCAGACTCAACT 60.473 55.000 0.00 0.00 40.61 3.16
4243 5028 0.398318 GTCCCAGCCAGACTCAACTT 59.602 55.000 0.00 0.00 0.00 2.66
4244 5029 1.623811 GTCCCAGCCAGACTCAACTTA 59.376 52.381 0.00 0.00 0.00 2.24
4245 5030 2.237392 GTCCCAGCCAGACTCAACTTAT 59.763 50.000 0.00 0.00 0.00 1.73
4246 5031 2.912956 TCCCAGCCAGACTCAACTTATT 59.087 45.455 0.00 0.00 0.00 1.40
4247 5032 3.012518 CCCAGCCAGACTCAACTTATTG 58.987 50.000 0.00 0.00 37.14 1.90
4248 5033 3.307691 CCCAGCCAGACTCAACTTATTGA 60.308 47.826 0.00 0.00 42.73 2.57
4249 5034 4.521146 CCAGCCAGACTCAACTTATTGAT 58.479 43.478 0.00 0.00 43.92 2.57
4250 5035 4.946157 CCAGCCAGACTCAACTTATTGATT 59.054 41.667 0.00 0.00 43.92 2.57
4251 5036 5.416952 CCAGCCAGACTCAACTTATTGATTT 59.583 40.000 0.00 0.00 43.92 2.17
4252 5037 6.071728 CCAGCCAGACTCAACTTATTGATTTT 60.072 38.462 0.00 0.00 43.92 1.82
4253 5038 7.373493 CAGCCAGACTCAACTTATTGATTTTT 58.627 34.615 0.00 0.00 43.92 1.94
4254 5039 7.540055 CAGCCAGACTCAACTTATTGATTTTTC 59.460 37.037 0.00 0.00 43.92 2.29
4255 5040 7.449704 AGCCAGACTCAACTTATTGATTTTTCT 59.550 33.333 0.00 0.00 43.92 2.52
4256 5041 8.730680 GCCAGACTCAACTTATTGATTTTTCTA 58.269 33.333 0.00 0.00 43.92 2.10
4270 5055 9.878599 ATTGATTTTTCTAATCTAATTACGCGG 57.121 29.630 12.47 0.00 0.00 6.46
4271 5056 7.349711 TGATTTTTCTAATCTAATTACGCGGC 58.650 34.615 12.47 0.00 0.00 6.53
4272 5057 5.662211 TTTTCTAATCTAATTACGCGGCC 57.338 39.130 12.47 0.00 0.00 6.13
4273 5058 4.325028 TTCTAATCTAATTACGCGGCCA 57.675 40.909 12.47 0.00 0.00 5.36
4274 5059 3.645884 TCTAATCTAATTACGCGGCCAC 58.354 45.455 12.47 0.00 0.00 5.01
4275 5060 1.214367 AATCTAATTACGCGGCCACG 58.786 50.000 12.53 12.53 44.63 4.94
4285 5070 3.190849 CGGCCACGCTGATCACAG 61.191 66.667 2.24 0.00 45.91 3.66
4286 5071 2.046892 GGCCACGCTGATCACAGT 60.047 61.111 0.00 0.00 45.04 3.55
4287 5072 2.103042 GGCCACGCTGATCACAGTC 61.103 63.158 0.00 0.00 45.04 3.51
4288 5073 1.374631 GCCACGCTGATCACAGTCA 60.375 57.895 0.00 0.00 45.04 3.41
4289 5074 0.742281 GCCACGCTGATCACAGTCAT 60.742 55.000 0.00 0.00 45.04 3.06
4290 5075 1.004595 CCACGCTGATCACAGTCATG 58.995 55.000 0.00 0.00 45.04 3.07
4291 5076 0.372679 CACGCTGATCACAGTCATGC 59.627 55.000 0.00 0.00 45.04 4.06
4292 5077 0.248565 ACGCTGATCACAGTCATGCT 59.751 50.000 0.00 0.00 45.04 3.79
4293 5078 1.478105 ACGCTGATCACAGTCATGCTA 59.522 47.619 0.00 0.00 45.04 3.49
4294 5079 2.094026 ACGCTGATCACAGTCATGCTAA 60.094 45.455 0.00 0.00 45.04 3.09
4295 5080 3.129109 CGCTGATCACAGTCATGCTAAT 58.871 45.455 0.00 0.00 45.04 1.73
4296 5081 3.183976 CGCTGATCACAGTCATGCTAATC 59.816 47.826 0.00 0.00 45.04 1.75
4297 5082 3.497640 GCTGATCACAGTCATGCTAATCC 59.502 47.826 0.00 0.00 45.04 3.01
4298 5083 4.743045 GCTGATCACAGTCATGCTAATCCT 60.743 45.833 0.00 0.00 45.04 3.24
4299 5084 5.510349 GCTGATCACAGTCATGCTAATCCTA 60.510 44.000 0.00 0.00 45.04 2.94
4300 5085 6.676990 TGATCACAGTCATGCTAATCCTAT 57.323 37.500 0.00 0.00 0.00 2.57
4301 5086 6.695429 TGATCACAGTCATGCTAATCCTATC 58.305 40.000 0.00 0.00 0.00 2.08
4302 5087 5.474578 TCACAGTCATGCTAATCCTATCC 57.525 43.478 0.00 0.00 0.00 2.59
4303 5088 4.021981 TCACAGTCATGCTAATCCTATCCG 60.022 45.833 0.00 0.00 0.00 4.18
4304 5089 3.259374 ACAGTCATGCTAATCCTATCCGG 59.741 47.826 0.00 0.00 0.00 5.14
4306 5091 3.511934 AGTCATGCTAATCCTATCCGGAC 59.488 47.826 6.12 0.00 46.80 4.79
4307 5092 3.258372 GTCATGCTAATCCTATCCGGACA 59.742 47.826 6.12 0.00 46.80 4.02
4308 5093 4.081420 GTCATGCTAATCCTATCCGGACAT 60.081 45.833 6.12 0.00 46.80 3.06
4309 5094 5.127194 GTCATGCTAATCCTATCCGGACATA 59.873 44.000 6.12 0.00 46.80 2.29
4310 5095 5.719563 TCATGCTAATCCTATCCGGACATAA 59.280 40.000 6.12 0.00 46.80 1.90
4311 5096 5.401531 TGCTAATCCTATCCGGACATAAC 57.598 43.478 6.12 0.00 46.80 1.89
4312 5097 5.084519 TGCTAATCCTATCCGGACATAACT 58.915 41.667 6.12 0.00 46.80 2.24
4313 5098 5.542635 TGCTAATCCTATCCGGACATAACTT 59.457 40.000 6.12 0.00 46.80 2.66
4314 5099 6.042781 TGCTAATCCTATCCGGACATAACTTT 59.957 38.462 6.12 0.00 46.80 2.66
4315 5100 6.369065 GCTAATCCTATCCGGACATAACTTTG 59.631 42.308 6.12 0.00 46.80 2.77
4316 5101 4.067972 TCCTATCCGGACATAACTTTGC 57.932 45.455 6.12 0.00 36.69 3.68
4317 5102 3.139077 CCTATCCGGACATAACTTTGCC 58.861 50.000 6.12 0.00 33.16 4.52
4318 5103 2.799126 ATCCGGACATAACTTTGCCA 57.201 45.000 6.12 0.00 0.00 4.92
4319 5104 2.799126 TCCGGACATAACTTTGCCAT 57.201 45.000 0.00 0.00 0.00 4.40
4320 5105 2.364632 TCCGGACATAACTTTGCCATG 58.635 47.619 0.00 0.00 0.00 3.66
4321 5106 1.202290 CCGGACATAACTTTGCCATGC 60.202 52.381 0.00 0.00 0.00 4.06
4322 5107 1.472082 CGGACATAACTTTGCCATGCA 59.528 47.619 0.00 0.00 36.47 3.96
4323 5108 2.099592 CGGACATAACTTTGCCATGCAT 59.900 45.455 0.00 0.00 38.76 3.96
4324 5109 3.709987 GGACATAACTTTGCCATGCATC 58.290 45.455 0.00 0.00 38.76 3.91
4325 5110 3.491447 GGACATAACTTTGCCATGCATCC 60.491 47.826 0.00 0.00 38.76 3.51
4326 5111 3.368248 ACATAACTTTGCCATGCATCCT 58.632 40.909 0.00 0.00 38.76 3.24
4327 5112 4.535781 ACATAACTTTGCCATGCATCCTA 58.464 39.130 0.00 0.00 38.76 2.94
4328 5113 4.581824 ACATAACTTTGCCATGCATCCTAG 59.418 41.667 0.00 0.00 38.76 3.02
4329 5114 2.814805 ACTTTGCCATGCATCCTAGT 57.185 45.000 0.00 0.00 38.76 2.57
4330 5115 3.931907 ACTTTGCCATGCATCCTAGTA 57.068 42.857 0.00 0.00 38.76 1.82
4331 5116 3.545703 ACTTTGCCATGCATCCTAGTAC 58.454 45.455 0.00 0.00 38.76 2.73
4332 5117 3.054434 ACTTTGCCATGCATCCTAGTACA 60.054 43.478 0.00 0.00 38.76 2.90
4333 5118 2.620251 TGCCATGCATCCTAGTACAC 57.380 50.000 0.00 0.00 31.71 2.90
4334 5119 1.140852 TGCCATGCATCCTAGTACACC 59.859 52.381 0.00 0.00 31.71 4.16
4335 5120 1.543429 GCCATGCATCCTAGTACACCC 60.543 57.143 0.00 0.00 0.00 4.61
4336 5121 1.768275 CCATGCATCCTAGTACACCCA 59.232 52.381 0.00 0.00 0.00 4.51
4337 5122 2.485479 CCATGCATCCTAGTACACCCAC 60.485 54.545 0.00 0.00 0.00 4.61
4338 5123 2.247699 TGCATCCTAGTACACCCACT 57.752 50.000 0.00 0.00 0.00 4.00
4339 5124 3.391799 TGCATCCTAGTACACCCACTA 57.608 47.619 0.00 0.00 0.00 2.74
4340 5125 3.715287 TGCATCCTAGTACACCCACTAA 58.285 45.455 0.00 0.00 30.77 2.24
4341 5126 3.449737 TGCATCCTAGTACACCCACTAAC 59.550 47.826 0.00 0.00 30.77 2.34
4342 5127 3.705072 GCATCCTAGTACACCCACTAACT 59.295 47.826 0.00 0.00 30.77 2.24
4343 5128 4.202131 GCATCCTAGTACACCCACTAACTC 60.202 50.000 0.00 0.00 30.77 3.01
4344 5129 4.662966 TCCTAGTACACCCACTAACTCA 57.337 45.455 0.00 0.00 30.77 3.41
4345 5130 5.202746 TCCTAGTACACCCACTAACTCAT 57.797 43.478 0.00 0.00 30.77 2.90
4346 5131 5.198965 TCCTAGTACACCCACTAACTCATC 58.801 45.833 0.00 0.00 30.77 2.92
4347 5132 5.044328 TCCTAGTACACCCACTAACTCATCT 60.044 44.000 0.00 0.00 30.77 2.90
4348 5133 6.159222 TCCTAGTACACCCACTAACTCATCTA 59.841 42.308 0.00 0.00 30.77 1.98
4349 5134 7.005296 CCTAGTACACCCACTAACTCATCTAT 58.995 42.308 0.00 0.00 30.77 1.98
4350 5135 6.716934 AGTACACCCACTAACTCATCTATG 57.283 41.667 0.00 0.00 0.00 2.23
4351 5136 6.195700 AGTACACCCACTAACTCATCTATGT 58.804 40.000 0.00 0.00 0.00 2.29
4352 5137 6.668283 AGTACACCCACTAACTCATCTATGTT 59.332 38.462 0.00 0.00 0.00 2.71
4353 5138 5.978814 ACACCCACTAACTCATCTATGTTC 58.021 41.667 0.00 0.00 0.00 3.18
4354 5139 5.043903 CACCCACTAACTCATCTATGTTCG 58.956 45.833 0.00 0.00 0.00 3.95
4355 5140 4.099573 ACCCACTAACTCATCTATGTTCGG 59.900 45.833 0.00 0.00 0.00 4.30
4356 5141 4.341235 CCCACTAACTCATCTATGTTCGGA 59.659 45.833 0.00 0.00 0.00 4.55
4357 5142 5.011125 CCCACTAACTCATCTATGTTCGGAT 59.989 44.000 0.00 0.00 0.00 4.18
4358 5143 6.463049 CCCACTAACTCATCTATGTTCGGATT 60.463 42.308 0.00 0.00 0.00 3.01
4359 5144 7.255836 CCCACTAACTCATCTATGTTCGGATTA 60.256 40.741 0.00 0.00 0.00 1.75
4360 5145 8.307483 CCACTAACTCATCTATGTTCGGATTAT 58.693 37.037 0.00 0.00 0.00 1.28
4361 5146 9.698309 CACTAACTCATCTATGTTCGGATTATT 57.302 33.333 0.00 0.00 0.00 1.40
4362 5147 9.915629 ACTAACTCATCTATGTTCGGATTATTC 57.084 33.333 0.00 0.00 0.00 1.75
4363 5148 9.360093 CTAACTCATCTATGTTCGGATTATTCC 57.640 37.037 0.00 0.00 38.81 3.01
4364 5149 7.303182 ACTCATCTATGTTCGGATTATTCCA 57.697 36.000 4.60 0.00 42.74 3.53
4365 5150 7.735917 ACTCATCTATGTTCGGATTATTCCAA 58.264 34.615 4.60 0.00 42.74 3.53
4366 5151 7.657761 ACTCATCTATGTTCGGATTATTCCAAC 59.342 37.037 4.60 7.82 42.74 3.77
4367 5152 7.505258 TCATCTATGTTCGGATTATTCCAACA 58.495 34.615 16.75 16.75 42.74 3.33
4368 5153 7.990314 TCATCTATGTTCGGATTATTCCAACAA 59.010 33.333 17.63 8.60 41.77 2.83
4369 5154 8.786898 CATCTATGTTCGGATTATTCCAACAAT 58.213 33.333 17.63 9.80 41.77 2.71
4370 5155 8.378172 TCTATGTTCGGATTATTCCAACAATC 57.622 34.615 17.63 0.00 41.77 2.67
4371 5156 5.828299 TGTTCGGATTATTCCAACAATCC 57.172 39.130 14.14 0.00 44.53 3.01
4372 5157 5.505780 TGTTCGGATTATTCCAACAATCCT 58.494 37.500 7.57 0.00 45.40 3.24
4373 5158 5.356751 TGTTCGGATTATTCCAACAATCCTG 59.643 40.000 7.57 2.60 45.40 3.86
4374 5159 3.882888 TCGGATTATTCCAACAATCCTGC 59.117 43.478 7.57 0.00 45.40 4.85
4375 5160 3.631686 CGGATTATTCCAACAATCCTGCA 59.368 43.478 7.57 0.00 45.40 4.41
4376 5161 4.097741 CGGATTATTCCAACAATCCTGCAA 59.902 41.667 7.57 0.00 45.40 4.08
4377 5162 5.221303 CGGATTATTCCAACAATCCTGCAAT 60.221 40.000 7.57 0.00 45.40 3.56
4378 5163 6.016360 CGGATTATTCCAACAATCCTGCAATA 60.016 38.462 7.57 0.00 45.40 1.90
4379 5164 7.373493 GGATTATTCCAACAATCCTGCAATAG 58.627 38.462 2.56 0.00 44.56 1.73
4380 5165 7.014615 GGATTATTCCAACAATCCTGCAATAGT 59.985 37.037 2.56 0.00 44.56 2.12
4381 5166 8.995027 ATTATTCCAACAATCCTGCAATAGTA 57.005 30.769 0.00 0.00 0.00 1.82
4382 5167 8.995027 TTATTCCAACAATCCTGCAATAGTAT 57.005 30.769 0.00 0.00 0.00 2.12
4383 5168 6.698008 TTCCAACAATCCTGCAATAGTATG 57.302 37.500 0.00 0.00 0.00 2.39
4384 5169 5.132502 TCCAACAATCCTGCAATAGTATGG 58.867 41.667 0.00 0.00 0.00 2.74
4385 5170 4.279169 CCAACAATCCTGCAATAGTATGGG 59.721 45.833 0.00 0.00 0.00 4.00
4386 5171 5.132502 CAACAATCCTGCAATAGTATGGGA 58.867 41.667 0.00 0.00 0.00 4.37
4387 5172 4.718961 ACAATCCTGCAATAGTATGGGAC 58.281 43.478 0.00 0.00 0.00 4.46
4388 5173 4.074970 CAATCCTGCAATAGTATGGGACC 58.925 47.826 0.00 0.00 0.00 4.46
4389 5174 2.770447 TCCTGCAATAGTATGGGACCA 58.230 47.619 0.00 0.00 0.00 4.02
4390 5175 3.119319 TCCTGCAATAGTATGGGACCAA 58.881 45.455 0.00 0.00 0.00 3.67
4391 5176 3.136443 TCCTGCAATAGTATGGGACCAAG 59.864 47.826 0.00 0.00 0.00 3.61
4392 5177 2.880890 CTGCAATAGTATGGGACCAAGC 59.119 50.000 0.00 0.00 0.00 4.01
4393 5178 2.240921 TGCAATAGTATGGGACCAAGCA 59.759 45.455 0.00 0.00 0.00 3.91
4394 5179 2.880890 GCAATAGTATGGGACCAAGCAG 59.119 50.000 0.00 0.00 0.00 4.24
4395 5180 3.685550 GCAATAGTATGGGACCAAGCAGT 60.686 47.826 0.00 0.00 0.00 4.40
4396 5181 4.130118 CAATAGTATGGGACCAAGCAGTC 58.870 47.826 0.00 0.00 35.95 3.51
4397 5182 1.656587 AGTATGGGACCAAGCAGTCA 58.343 50.000 0.00 0.00 38.59 3.41
4398 5183 1.556911 AGTATGGGACCAAGCAGTCAG 59.443 52.381 0.00 0.00 38.59 3.51
4399 5184 0.911769 TATGGGACCAAGCAGTCAGG 59.088 55.000 0.00 0.00 38.59 3.86
4400 5185 0.842030 ATGGGACCAAGCAGTCAGGA 60.842 55.000 0.00 0.00 38.59 3.86
4401 5186 1.003233 GGGACCAAGCAGTCAGGAC 60.003 63.158 0.00 0.00 38.59 3.85
4402 5187 1.754745 GGACCAAGCAGTCAGGACA 59.245 57.895 1.84 0.00 38.59 4.02
4403 5188 0.108585 GGACCAAGCAGTCAGGACAA 59.891 55.000 1.84 0.00 38.59 3.18
4404 5189 1.230324 GACCAAGCAGTCAGGACAAC 58.770 55.000 1.84 0.00 36.73 3.32
4405 5190 0.546122 ACCAAGCAGTCAGGACAACA 59.454 50.000 1.84 0.00 0.00 3.33
4406 5191 1.064758 ACCAAGCAGTCAGGACAACAA 60.065 47.619 1.84 0.00 0.00 2.83
4407 5192 2.023673 CCAAGCAGTCAGGACAACAAA 58.976 47.619 1.84 0.00 0.00 2.83
4408 5193 2.624838 CCAAGCAGTCAGGACAACAAAT 59.375 45.455 1.84 0.00 0.00 2.32
4409 5194 3.551454 CCAAGCAGTCAGGACAACAAATG 60.551 47.826 1.84 0.00 0.00 2.32
4410 5195 3.213206 AGCAGTCAGGACAACAAATGA 57.787 42.857 1.84 0.00 0.00 2.57
4411 5196 2.880890 AGCAGTCAGGACAACAAATGAC 59.119 45.455 1.84 0.00 41.86 3.06
4412 5197 2.618241 GCAGTCAGGACAACAAATGACA 59.382 45.455 6.91 0.00 43.55 3.58
4413 5198 3.066621 GCAGTCAGGACAACAAATGACAA 59.933 43.478 6.91 0.00 43.55 3.18
4414 5199 4.439974 GCAGTCAGGACAACAAATGACAAA 60.440 41.667 6.91 0.00 43.55 2.83
4415 5200 5.737063 GCAGTCAGGACAACAAATGACAAAT 60.737 40.000 6.91 0.00 43.55 2.32
4416 5201 5.688621 CAGTCAGGACAACAAATGACAAATG 59.311 40.000 6.91 0.00 43.55 2.32
4417 5202 4.984161 GTCAGGACAACAAATGACAAATGG 59.016 41.667 0.00 0.00 41.32 3.16
4418 5203 4.648762 TCAGGACAACAAATGACAAATGGT 59.351 37.500 0.00 0.00 0.00 3.55
4419 5204 5.830457 TCAGGACAACAAATGACAAATGGTA 59.170 36.000 0.00 0.00 0.00 3.25
4420 5205 5.920273 CAGGACAACAAATGACAAATGGTAC 59.080 40.000 0.00 0.00 0.00 3.34
4421 5206 4.915085 GGACAACAAATGACAAATGGTACG 59.085 41.667 0.00 0.00 0.00 3.67
4422 5207 5.278071 GGACAACAAATGACAAATGGTACGA 60.278 40.000 0.00 0.00 0.00 3.43
4423 5208 5.757886 ACAACAAATGACAAATGGTACGAG 58.242 37.500 0.00 0.00 0.00 4.18
4424 5209 5.529430 ACAACAAATGACAAATGGTACGAGA 59.471 36.000 0.00 0.00 0.00 4.04
4425 5210 5.607119 ACAAATGACAAATGGTACGAGAC 57.393 39.130 0.00 0.00 0.00 3.36
4426 5211 4.151689 ACAAATGACAAATGGTACGAGACG 59.848 41.667 0.00 0.00 0.00 4.18
4427 5212 1.705256 TGACAAATGGTACGAGACGC 58.295 50.000 0.00 0.00 0.00 5.19
4429 5214 0.734942 ACAAATGGTACGAGACGCGG 60.735 55.000 12.47 0.00 46.49 6.46
4430 5215 1.808390 AAATGGTACGAGACGCGGC 60.808 57.895 12.47 7.86 46.49 6.53
4431 5216 3.711541 AATGGTACGAGACGCGGCC 62.712 63.158 9.25 0.00 46.49 6.13
4434 5219 4.549516 GTACGAGACGCGGCCCTC 62.550 72.222 9.25 11.89 46.49 4.30
4454 5239 3.551407 GTCGCCCCCTCATCCCTC 61.551 72.222 0.00 0.00 0.00 4.30
4455 5240 3.767268 TCGCCCCCTCATCCCTCT 61.767 66.667 0.00 0.00 0.00 3.69
4456 5241 2.770048 CGCCCCCTCATCCCTCTT 60.770 66.667 0.00 0.00 0.00 2.85
4457 5242 2.812619 CGCCCCCTCATCCCTCTTC 61.813 68.421 0.00 0.00 0.00 2.87
4458 5243 2.456443 GCCCCCTCATCCCTCTTCC 61.456 68.421 0.00 0.00 0.00 3.46
4459 5244 2.143419 CCCCCTCATCCCTCTTCCG 61.143 68.421 0.00 0.00 0.00 4.30
4460 5245 1.383248 CCCCTCATCCCTCTTCCGT 60.383 63.158 0.00 0.00 0.00 4.69
4461 5246 1.403687 CCCCTCATCCCTCTTCCGTC 61.404 65.000 0.00 0.00 0.00 4.79
4462 5247 1.403687 CCCTCATCCCTCTTCCGTCC 61.404 65.000 0.00 0.00 0.00 4.79
4463 5248 1.403687 CCTCATCCCTCTTCCGTCCC 61.404 65.000 0.00 0.00 0.00 4.46
4464 5249 0.397816 CTCATCCCTCTTCCGTCCCT 60.398 60.000 0.00 0.00 0.00 4.20
4465 5250 0.042731 TCATCCCTCTTCCGTCCCTT 59.957 55.000 0.00 0.00 0.00 3.95
4466 5251 0.179000 CATCCCTCTTCCGTCCCTTG 59.821 60.000 0.00 0.00 0.00 3.61
4467 5252 1.627297 ATCCCTCTTCCGTCCCTTGC 61.627 60.000 0.00 0.00 0.00 4.01
4468 5253 2.269241 CCTCTTCCGTCCCTTGCC 59.731 66.667 0.00 0.00 0.00 4.52
4469 5254 2.592993 CCTCTTCCGTCCCTTGCCA 61.593 63.158 0.00 0.00 0.00 4.92
4470 5255 1.376037 CTCTTCCGTCCCTTGCCAC 60.376 63.158 0.00 0.00 0.00 5.01
4471 5256 2.359975 CTTCCGTCCCTTGCCACC 60.360 66.667 0.00 0.00 0.00 4.61
4472 5257 4.323477 TTCCGTCCCTTGCCACCG 62.323 66.667 0.00 0.00 0.00 4.94
4479 5264 4.020617 CCTTGCCACCGCTGGAGA 62.021 66.667 0.00 0.00 40.55 3.71
4480 5265 2.743928 CTTGCCACCGCTGGAGAC 60.744 66.667 0.00 0.00 40.55 3.36
4481 5266 4.680237 TTGCCACCGCTGGAGACG 62.680 66.667 0.00 0.00 40.55 4.18
4529 5314 3.728373 GAAGGTGGTGGCGGGGAT 61.728 66.667 0.00 0.00 0.00 3.85
4530 5315 3.699134 GAAGGTGGTGGCGGGGATC 62.699 68.421 0.00 0.00 0.00 3.36
4531 5316 4.741239 AGGTGGTGGCGGGGATCT 62.741 66.667 0.00 0.00 0.00 2.75
4532 5317 4.176752 GGTGGTGGCGGGGATCTC 62.177 72.222 0.00 0.00 0.00 2.75
4533 5318 4.530857 GTGGTGGCGGGGATCTCG 62.531 72.222 0.00 0.00 0.00 4.04
4549 5334 4.702081 CGGCGTCCGGATCGATCC 62.702 72.222 31.04 31.04 44.15 3.36
4550 5335 4.359455 GGCGTCCGGATCGATCCC 62.359 72.222 33.51 20.95 44.24 3.85
4551 5336 4.702081 GCGTCCGGATCGATCCCG 62.702 72.222 33.51 30.07 44.24 5.14
4552 5337 3.285215 CGTCCGGATCGATCCCGT 61.285 66.667 33.51 0.00 45.14 5.28
4553 5338 2.643844 GTCCGGATCGATCCCGTC 59.356 66.667 33.51 22.51 45.14 4.79
4554 5339 2.596631 TCCGGATCGATCCCGTCC 60.597 66.667 33.51 14.84 45.14 4.79
4556 5341 4.702081 CGGATCGATCCCGTCCGC 62.702 72.222 33.51 11.53 45.01 5.54
4557 5342 4.359455 GGATCGATCCCGTCCGCC 62.359 72.222 30.80 6.47 41.20 6.13
4558 5343 3.296054 GATCGATCCCGTCCGCCT 61.296 66.667 14.76 0.00 37.05 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
799 1517 4.279145 TCTAGGGATGTTAACTTCTCGCT 58.721 43.478 17.99 18.61 35.42 4.93
1097 1822 3.289797 TGTTGCAACTTGGGGAACA 57.710 47.368 28.61 4.48 43.00 3.18
1201 1926 6.592994 GGCACGTAACCCCTAAATCTATTATC 59.407 42.308 0.00 0.00 0.00 1.75
1230 1955 1.005450 GTTCCCAGCTTCCCCAATGTA 59.995 52.381 0.00 0.00 0.00 2.29
1282 2014 6.322201 CACCCCTTGTTATCATTAGCTTCAAT 59.678 38.462 0.00 0.00 0.00 2.57
1468 2200 5.299279 CCAGACCAACTAAATTGCCGATATT 59.701 40.000 0.00 0.00 36.93 1.28
1560 2292 4.002906 TGACAAGGTTAGCTCGTTCAAT 57.997 40.909 0.00 0.00 0.00 2.57
1599 2333 1.001746 CCTAGCGATGATGGCATGAGT 59.998 52.381 3.81 0.00 34.11 3.41
1641 2375 5.603170 AGTTGCCATAGCTTGCATAAAAT 57.397 34.783 6.16 0.00 40.80 1.82
1778 2512 4.832823 ACAAGTCCAAATACCAAGAAAGGG 59.167 41.667 0.00 0.00 0.00 3.95
1832 2566 0.320073 TGCCAAACTACCGACTTCCG 60.320 55.000 0.00 0.00 38.18 4.30
1878 2612 1.271856 TCTGGCCAGACAACCGATTA 58.728 50.000 32.00 5.23 31.41 1.75
2222 2964 5.587388 ATTGATATTCCCAACAACTGCTG 57.413 39.130 0.00 0.00 0.00 4.41
2405 3150 1.956477 TCTTGCTTGGTTTGAGCTTCC 59.044 47.619 0.00 0.00 40.75 3.46
2441 3186 1.656652 ATTTTCATCGACGGCTGGAG 58.343 50.000 0.00 0.00 0.00 3.86
2443 3188 2.675844 TGTAATTTTCATCGACGGCTGG 59.324 45.455 0.00 0.00 0.00 4.85
2534 3279 6.150474 ACACTTATAAACAGCGCCATAACTTT 59.850 34.615 2.29 0.00 0.00 2.66
2584 3329 4.074970 AGATTAAACACCTTGACAGCCAG 58.925 43.478 0.00 0.00 0.00 4.85
2731 3476 4.320608 TGAACTCAAAAACCAATGCCTC 57.679 40.909 0.00 0.00 0.00 4.70
2941 3710 1.788258 ACTCGTGCACTCATGTCTTG 58.212 50.000 16.19 0.00 0.00 3.02
2990 3759 1.485066 TCCCCTCGCCTGTATTTTCTC 59.515 52.381 0.00 0.00 0.00 2.87
3202 3983 4.154918 CCTTCCAGTAAACATCTCAAGCAC 59.845 45.833 0.00 0.00 0.00 4.40
3255 4036 3.978855 GGACAAACTTACGCAAATCCAAC 59.021 43.478 0.00 0.00 0.00 3.77
3266 4047 3.944087 AGAGCATCCTGGACAAACTTAC 58.056 45.455 0.00 0.00 33.66 2.34
3339 4120 4.114058 ACTTGCAATGTTATCATGGTGC 57.886 40.909 0.00 4.24 37.93 5.01
3364 4148 2.087646 GACCAAGCACTCCTGAATTCC 58.912 52.381 2.27 0.00 0.00 3.01
3581 4365 2.175878 GCTCGGGCTCACAATATCAT 57.824 50.000 0.00 0.00 35.22 2.45
3673 4457 7.836512 TGAAAATTTCATGCGTGTAGAAAAAC 58.163 30.769 4.03 0.00 35.20 2.43
3699 4483 5.062934 CACCGCTACGAATGTTATTTCTTCA 59.937 40.000 0.00 0.00 0.00 3.02
3714 4498 1.787057 TTTTTGCCCACACCGCTACG 61.787 55.000 0.00 0.00 0.00 3.51
3733 4517 2.362077 AGCATTTTGGAGCGTCAGTTTT 59.638 40.909 0.00 0.00 35.48 2.43
3745 4529 5.816449 AAGTGTTTTTGGAAGCATTTTGG 57.184 34.783 0.00 0.00 0.00 3.28
3820 4604 1.068610 ACGCGTGGAATTTTCATGGTG 60.069 47.619 12.93 0.00 0.00 4.17
3925 4709 6.212187 TGTGATCCCGATCTCATATGATCTTT 59.788 38.462 5.72 0.00 40.32 2.52
3932 4716 5.596361 GGAGTATGTGATCCCGATCTCATAT 59.404 44.000 22.61 15.48 46.71 1.78
3936 4720 3.057174 GTGGAGTATGTGATCCCGATCTC 60.057 52.174 6.28 3.43 38.60 2.75
3962 4746 5.049060 TCCAACAAGGATTATGTGTTGTTCG 60.049 40.000 13.07 1.13 46.88 3.95
3992 4776 1.698506 GAGTGATCGGTCCTGAGGAT 58.301 55.000 3.65 0.00 32.73 3.24
3993 4777 0.395862 GGAGTGATCGGTCCTGAGGA 60.396 60.000 0.00 0.00 0.00 3.71
3997 4782 2.093500 TGATTTGGAGTGATCGGTCCTG 60.093 50.000 12.99 0.00 33.57 3.86
4002 4787 2.977914 AGTGTGATTTGGAGTGATCGG 58.022 47.619 0.00 0.00 0.00 4.18
4010 4795 1.795872 CGTGCGTTAGTGTGATTTGGA 59.204 47.619 0.00 0.00 0.00 3.53
4032 4817 4.202151 CCCTTGGCTATAAGTTTTCCATGC 60.202 45.833 0.00 0.00 0.00 4.06
4033 4818 4.202151 GCCCTTGGCTATAAGTTTTCCATG 60.202 45.833 0.00 0.00 46.69 3.66
4034 4819 3.960755 GCCCTTGGCTATAAGTTTTCCAT 59.039 43.478 0.00 0.00 46.69 3.41
4090 4875 5.765182 ACACCATGAGAGAAAAACGAGAAAT 59.235 36.000 0.00 0.00 0.00 2.17
4096 4881 5.465390 TCTGTAACACCATGAGAGAAAAACG 59.535 40.000 0.00 0.00 0.00 3.60
4117 4902 2.169663 GCATCATTGCGTGAGTTCTG 57.830 50.000 0.00 0.00 40.92 3.02
4128 4913 4.926860 TGACGTAGAAGTTGCATCATTG 57.073 40.909 0.00 0.00 0.00 2.82
4129 4914 4.393062 CCTTGACGTAGAAGTTGCATCATT 59.607 41.667 0.00 0.00 0.00 2.57
4130 4915 3.935203 CCTTGACGTAGAAGTTGCATCAT 59.065 43.478 0.00 0.00 0.00 2.45
4131 4916 3.006430 TCCTTGACGTAGAAGTTGCATCA 59.994 43.478 0.00 0.00 0.00 3.07
4132 4917 3.368236 GTCCTTGACGTAGAAGTTGCATC 59.632 47.826 0.00 0.00 0.00 3.91
4133 4918 3.326747 GTCCTTGACGTAGAAGTTGCAT 58.673 45.455 0.00 0.00 0.00 3.96
4134 4919 2.547218 GGTCCTTGACGTAGAAGTTGCA 60.547 50.000 0.00 0.00 32.65 4.08
4135 4920 2.067013 GGTCCTTGACGTAGAAGTTGC 58.933 52.381 0.00 0.00 32.65 4.17
4136 4921 2.036733 TGGGTCCTTGACGTAGAAGTTG 59.963 50.000 0.00 0.00 32.65 3.16
4137 4922 2.299297 CTGGGTCCTTGACGTAGAAGTT 59.701 50.000 0.00 0.00 32.65 2.66
4138 4923 1.893801 CTGGGTCCTTGACGTAGAAGT 59.106 52.381 0.00 0.00 32.65 3.01
4139 4924 1.404315 GCTGGGTCCTTGACGTAGAAG 60.404 57.143 0.00 0.00 32.65 2.85
4140 4925 0.606604 GCTGGGTCCTTGACGTAGAA 59.393 55.000 0.00 0.00 32.65 2.10
4141 4926 0.251653 AGCTGGGTCCTTGACGTAGA 60.252 55.000 0.00 0.00 32.65 2.59
4142 4927 1.471119 TAGCTGGGTCCTTGACGTAG 58.529 55.000 0.00 0.00 32.65 3.51
4143 4928 1.547372 GTTAGCTGGGTCCTTGACGTA 59.453 52.381 0.00 0.00 32.65 3.57
4144 4929 0.320697 GTTAGCTGGGTCCTTGACGT 59.679 55.000 0.00 0.00 32.65 4.34
4145 4930 0.391263 GGTTAGCTGGGTCCTTGACG 60.391 60.000 0.00 0.00 32.65 4.35
4146 4931 0.984995 AGGTTAGCTGGGTCCTTGAC 59.015 55.000 0.00 0.00 0.00 3.18
4147 4932 2.185387 GTAGGTTAGCTGGGTCCTTGA 58.815 52.381 0.00 0.00 0.00 3.02
4148 4933 1.209747 GGTAGGTTAGCTGGGTCCTTG 59.790 57.143 0.00 0.00 0.00 3.61
4149 4934 1.581223 GGTAGGTTAGCTGGGTCCTT 58.419 55.000 0.00 0.00 0.00 3.36
4150 4935 0.686769 CGGTAGGTTAGCTGGGTCCT 60.687 60.000 0.00 1.15 0.00 3.85
4151 4936 1.683418 CCGGTAGGTTAGCTGGGTCC 61.683 65.000 0.00 0.00 0.00 4.46
4152 4937 0.685458 TCCGGTAGGTTAGCTGGGTC 60.685 60.000 0.00 0.00 39.05 4.46
4153 4938 0.974525 GTCCGGTAGGTTAGCTGGGT 60.975 60.000 0.00 0.00 39.05 4.51
4154 4939 1.683418 GGTCCGGTAGGTTAGCTGGG 61.683 65.000 0.00 0.00 39.05 4.45
4155 4940 1.821258 GGTCCGGTAGGTTAGCTGG 59.179 63.158 0.00 0.00 39.05 4.85
4156 4941 1.318158 ACGGTCCGGTAGGTTAGCTG 61.318 60.000 17.28 0.00 39.05 4.24
4157 4942 1.000396 ACGGTCCGGTAGGTTAGCT 60.000 57.895 17.28 0.00 39.05 3.32
4158 4943 1.140375 CACGGTCCGGTAGGTTAGC 59.860 63.158 17.28 0.00 39.05 3.09
4159 4944 0.453390 GACACGGTCCGGTAGGTTAG 59.547 60.000 17.28 0.00 39.05 2.34
4160 4945 0.965363 GGACACGGTCCGGTAGGTTA 60.965 60.000 17.28 0.00 43.14 2.85
4161 4946 2.278330 GGACACGGTCCGGTAGGTT 61.278 63.158 17.28 0.00 43.14 3.50
4162 4947 2.677875 GGACACGGTCCGGTAGGT 60.678 66.667 17.28 8.02 43.14 3.08
4176 4961 3.428589 GGTGGAAGATGTACGTGTAGGAC 60.429 52.174 0.00 0.00 0.00 3.85
4177 4962 2.756760 GGTGGAAGATGTACGTGTAGGA 59.243 50.000 0.00 0.00 0.00 2.94
4178 4963 2.494471 TGGTGGAAGATGTACGTGTAGG 59.506 50.000 0.00 0.00 0.00 3.18
4179 4964 3.861276 TGGTGGAAGATGTACGTGTAG 57.139 47.619 0.00 0.00 0.00 2.74
4180 4965 3.321396 TGTTGGTGGAAGATGTACGTGTA 59.679 43.478 0.00 0.00 0.00 2.90
4181 4966 2.103432 TGTTGGTGGAAGATGTACGTGT 59.897 45.455 0.00 0.00 0.00 4.49
4182 4967 2.478894 GTGTTGGTGGAAGATGTACGTG 59.521 50.000 0.00 0.00 0.00 4.49
4183 4968 2.103432 TGTGTTGGTGGAAGATGTACGT 59.897 45.455 0.00 0.00 0.00 3.57
4184 4969 2.761559 TGTGTTGGTGGAAGATGTACG 58.238 47.619 0.00 0.00 0.00 3.67
4185 4970 3.880490 TGTTGTGTTGGTGGAAGATGTAC 59.120 43.478 0.00 0.00 0.00 2.90
4186 4971 4.157849 TGTTGTGTTGGTGGAAGATGTA 57.842 40.909 0.00 0.00 0.00 2.29
4187 4972 3.011566 TGTTGTGTTGGTGGAAGATGT 57.988 42.857 0.00 0.00 0.00 3.06
4188 4973 3.631686 TCTTGTTGTGTTGGTGGAAGATG 59.368 43.478 0.00 0.00 0.00 2.90
4189 4974 3.897239 TCTTGTTGTGTTGGTGGAAGAT 58.103 40.909 0.00 0.00 0.00 2.40
4190 4975 3.358111 TCTTGTTGTGTTGGTGGAAGA 57.642 42.857 0.00 0.00 0.00 2.87
4191 4976 4.320494 GCTATCTTGTTGTGTTGGTGGAAG 60.320 45.833 0.00 0.00 0.00 3.46
4192 4977 3.568007 GCTATCTTGTTGTGTTGGTGGAA 59.432 43.478 0.00 0.00 0.00 3.53
4193 4978 3.146066 GCTATCTTGTTGTGTTGGTGGA 58.854 45.455 0.00 0.00 0.00 4.02
4194 4979 2.228822 GGCTATCTTGTTGTGTTGGTGG 59.771 50.000 0.00 0.00 0.00 4.61
4195 4980 2.884012 TGGCTATCTTGTTGTGTTGGTG 59.116 45.455 0.00 0.00 0.00 4.17
4196 4981 3.149196 CTGGCTATCTTGTTGTGTTGGT 58.851 45.455 0.00 0.00 0.00 3.67
4197 4982 2.489329 CCTGGCTATCTTGTTGTGTTGG 59.511 50.000 0.00 0.00 0.00 3.77
4198 4983 2.095059 GCCTGGCTATCTTGTTGTGTTG 60.095 50.000 12.43 0.00 0.00 3.33
4199 4984 2.162681 GCCTGGCTATCTTGTTGTGTT 58.837 47.619 12.43 0.00 0.00 3.32
4200 4985 1.073763 TGCCTGGCTATCTTGTTGTGT 59.926 47.619 21.03 0.00 0.00 3.72
4201 4986 1.470098 GTGCCTGGCTATCTTGTTGTG 59.530 52.381 21.03 0.00 0.00 3.33
4202 4987 1.073763 TGTGCCTGGCTATCTTGTTGT 59.926 47.619 21.03 0.00 0.00 3.32
4203 4988 1.825090 TGTGCCTGGCTATCTTGTTG 58.175 50.000 21.03 0.00 0.00 3.33
4204 4989 2.224867 ACTTGTGCCTGGCTATCTTGTT 60.225 45.455 21.03 0.00 0.00 2.83
4205 4990 1.352352 ACTTGTGCCTGGCTATCTTGT 59.648 47.619 21.03 8.32 0.00 3.16
4206 4991 2.012673 GACTTGTGCCTGGCTATCTTG 58.987 52.381 21.03 7.71 0.00 3.02
4207 4992 1.065126 GGACTTGTGCCTGGCTATCTT 60.065 52.381 21.03 1.02 0.00 2.40
4208 4993 0.543749 GGACTTGTGCCTGGCTATCT 59.456 55.000 21.03 0.00 0.00 1.98
4209 4994 0.464554 GGGACTTGTGCCTGGCTATC 60.465 60.000 21.03 10.76 0.00 2.08
4210 4995 1.207488 TGGGACTTGTGCCTGGCTAT 61.207 55.000 21.03 0.11 0.00 2.97
4211 4996 1.841302 CTGGGACTTGTGCCTGGCTA 61.841 60.000 21.03 6.16 0.00 3.93
4212 4997 3.177884 TGGGACTTGTGCCTGGCT 61.178 61.111 21.03 0.00 0.00 4.75
4213 4998 2.674380 CTGGGACTTGTGCCTGGC 60.674 66.667 12.87 12.87 0.00 4.85
4214 4999 2.674380 GCTGGGACTTGTGCCTGG 60.674 66.667 16.86 9.41 0.00 4.45
4215 5000 2.674380 GGCTGGGACTTGTGCCTG 60.674 66.667 12.32 12.37 41.92 4.85
4216 5001 3.177884 TGGCTGGGACTTGTGCCT 61.178 61.111 12.32 0.00 45.11 4.75
4217 5002 2.674380 CTGGCTGGGACTTGTGCC 60.674 66.667 4.29 4.29 45.10 5.01
4218 5003 1.968540 GTCTGGCTGGGACTTGTGC 60.969 63.158 0.00 0.00 0.00 4.57
4219 5004 0.321122 GAGTCTGGCTGGGACTTGTG 60.321 60.000 9.00 0.00 43.13 3.33
4220 5005 0.764369 TGAGTCTGGCTGGGACTTGT 60.764 55.000 9.00 0.00 43.13 3.16
4221 5006 0.397941 TTGAGTCTGGCTGGGACTTG 59.602 55.000 9.00 0.00 43.13 3.16
4222 5007 0.398318 GTTGAGTCTGGCTGGGACTT 59.602 55.000 9.00 0.00 43.13 3.01
4223 5008 0.472734 AGTTGAGTCTGGCTGGGACT 60.473 55.000 7.75 7.75 45.37 3.85
4224 5009 0.398318 AAGTTGAGTCTGGCTGGGAC 59.602 55.000 0.00 0.00 0.00 4.46
4225 5010 2.024176 TAAGTTGAGTCTGGCTGGGA 57.976 50.000 0.00 0.00 0.00 4.37
4226 5011 3.012518 CAATAAGTTGAGTCTGGCTGGG 58.987 50.000 0.00 0.00 37.53 4.45
4227 5012 3.942829 TCAATAAGTTGAGTCTGGCTGG 58.057 45.455 0.00 0.00 39.36 4.85
4228 5013 6.506500 AAATCAATAAGTTGAGTCTGGCTG 57.493 37.500 0.00 0.00 46.75 4.85
4229 5014 7.449704 AGAAAAATCAATAAGTTGAGTCTGGCT 59.550 33.333 0.00 0.00 46.75 4.75
4230 5015 7.597386 AGAAAAATCAATAAGTTGAGTCTGGC 58.403 34.615 0.00 0.00 46.75 4.85
4244 5029 9.878599 CCGCGTAATTAGATTAGAAAAATCAAT 57.121 29.630 4.92 0.00 0.00 2.57
4245 5030 7.853929 GCCGCGTAATTAGATTAGAAAAATCAA 59.146 33.333 4.92 0.00 0.00 2.57
4246 5031 7.349711 GCCGCGTAATTAGATTAGAAAAATCA 58.650 34.615 4.92 0.00 0.00 2.57
4247 5032 6.795593 GGCCGCGTAATTAGATTAGAAAAATC 59.204 38.462 4.92 0.00 0.00 2.17
4248 5033 6.261381 TGGCCGCGTAATTAGATTAGAAAAAT 59.739 34.615 4.92 0.00 0.00 1.82
4249 5034 5.585445 TGGCCGCGTAATTAGATTAGAAAAA 59.415 36.000 4.92 0.00 0.00 1.94
4250 5035 5.006941 GTGGCCGCGTAATTAGATTAGAAAA 59.993 40.000 4.92 0.00 0.00 2.29
4251 5036 4.508861 GTGGCCGCGTAATTAGATTAGAAA 59.491 41.667 4.92 0.00 0.00 2.52
4252 5037 4.053295 GTGGCCGCGTAATTAGATTAGAA 58.947 43.478 4.92 0.00 0.00 2.10
4253 5038 3.645884 GTGGCCGCGTAATTAGATTAGA 58.354 45.455 4.92 0.00 0.00 2.10
4254 5039 2.407361 CGTGGCCGCGTAATTAGATTAG 59.593 50.000 30.21 0.00 0.00 1.73
4255 5040 2.396601 CGTGGCCGCGTAATTAGATTA 58.603 47.619 30.21 0.00 0.00 1.75
4256 5041 1.214367 CGTGGCCGCGTAATTAGATT 58.786 50.000 30.21 0.00 0.00 2.40
4257 5042 2.895039 CGTGGCCGCGTAATTAGAT 58.105 52.632 30.21 0.00 0.00 1.98
4258 5043 4.405762 CGTGGCCGCGTAATTAGA 57.594 55.556 30.21 0.00 0.00 2.10
4268 5053 3.190849 CTGTGATCAGCGTGGCCG 61.191 66.667 0.00 0.00 34.79 6.13
4269 5054 2.046892 ACTGTGATCAGCGTGGCC 60.047 61.111 0.00 0.00 44.77 5.36
4270 5055 0.742281 ATGACTGTGATCAGCGTGGC 60.742 55.000 0.00 0.00 44.77 5.01
4271 5056 1.004595 CATGACTGTGATCAGCGTGG 58.995 55.000 0.00 0.00 44.77 4.94
4272 5057 0.372679 GCATGACTGTGATCAGCGTG 59.627 55.000 0.00 0.00 44.77 5.34
4273 5058 0.248565 AGCATGACTGTGATCAGCGT 59.751 50.000 0.00 0.00 44.77 5.07
4274 5059 2.214387 TAGCATGACTGTGATCAGCG 57.786 50.000 0.00 0.00 44.77 5.18
4275 5060 3.497640 GGATTAGCATGACTGTGATCAGC 59.502 47.826 0.00 0.00 44.77 4.26
4276 5061 4.958509 AGGATTAGCATGACTGTGATCAG 58.041 43.478 0.00 0.00 46.18 2.90
4277 5062 6.295518 GGATAGGATTAGCATGACTGTGATCA 60.296 42.308 0.00 0.00 0.00 2.92
4278 5063 6.105333 GGATAGGATTAGCATGACTGTGATC 58.895 44.000 0.00 0.00 0.00 2.92
4279 5064 5.337089 CGGATAGGATTAGCATGACTGTGAT 60.337 44.000 0.00 0.00 0.00 3.06
4280 5065 4.021981 CGGATAGGATTAGCATGACTGTGA 60.022 45.833 0.00 0.00 0.00 3.58
4281 5066 4.240888 CGGATAGGATTAGCATGACTGTG 58.759 47.826 0.00 0.00 0.00 3.66
4282 5067 3.259374 CCGGATAGGATTAGCATGACTGT 59.741 47.826 0.00 0.00 45.00 3.55
4283 5068 3.511540 TCCGGATAGGATTAGCATGACTG 59.488 47.826 0.00 0.00 45.98 3.51
4284 5069 3.779444 TCCGGATAGGATTAGCATGACT 58.221 45.455 0.00 0.00 45.98 3.41
4296 5081 3.139077 GGCAAAGTTATGTCCGGATAGG 58.861 50.000 7.81 0.00 42.97 2.57
4297 5082 3.804036 TGGCAAAGTTATGTCCGGATAG 58.196 45.455 7.81 0.00 0.00 2.08
4298 5083 3.916359 TGGCAAAGTTATGTCCGGATA 57.084 42.857 7.81 4.93 0.00 2.59
4299 5084 2.799126 TGGCAAAGTTATGTCCGGAT 57.201 45.000 7.81 0.00 0.00 4.18
4300 5085 2.364632 CATGGCAAAGTTATGTCCGGA 58.635 47.619 0.00 0.00 0.00 5.14
4301 5086 1.202290 GCATGGCAAAGTTATGTCCGG 60.202 52.381 0.00 0.00 0.00 5.14
4302 5087 1.472082 TGCATGGCAAAGTTATGTCCG 59.528 47.619 0.00 0.00 34.76 4.79
4303 5088 3.491447 GGATGCATGGCAAAGTTATGTCC 60.491 47.826 2.46 0.00 43.62 4.02
4304 5089 3.382546 AGGATGCATGGCAAAGTTATGTC 59.617 43.478 2.46 0.00 43.62 3.06
4305 5090 3.368248 AGGATGCATGGCAAAGTTATGT 58.632 40.909 2.46 0.00 43.62 2.29
4306 5091 4.581824 ACTAGGATGCATGGCAAAGTTATG 59.418 41.667 2.46 0.00 43.62 1.90
4307 5092 4.796606 ACTAGGATGCATGGCAAAGTTAT 58.203 39.130 2.46 0.00 43.62 1.89
4308 5093 4.235079 ACTAGGATGCATGGCAAAGTTA 57.765 40.909 2.46 0.00 43.62 2.24
4309 5094 3.091633 ACTAGGATGCATGGCAAAGTT 57.908 42.857 2.46 0.00 43.62 2.66
4310 5095 2.814805 ACTAGGATGCATGGCAAAGT 57.185 45.000 2.46 0.00 43.62 2.66
4311 5096 3.313526 GTGTACTAGGATGCATGGCAAAG 59.686 47.826 2.46 0.00 43.62 2.77
4312 5097 3.278574 GTGTACTAGGATGCATGGCAAA 58.721 45.455 2.46 0.00 43.62 3.68
4313 5098 2.421388 GGTGTACTAGGATGCATGGCAA 60.421 50.000 2.46 0.00 43.62 4.52
4314 5099 1.140852 GGTGTACTAGGATGCATGGCA 59.859 52.381 2.46 0.00 44.86 4.92
4315 5100 1.543429 GGGTGTACTAGGATGCATGGC 60.543 57.143 2.46 0.00 0.00 4.40
4316 5101 1.768275 TGGGTGTACTAGGATGCATGG 59.232 52.381 2.46 0.00 0.00 3.66
4317 5102 2.435805 AGTGGGTGTACTAGGATGCATG 59.564 50.000 2.46 0.00 0.00 4.06
4318 5103 2.764269 AGTGGGTGTACTAGGATGCAT 58.236 47.619 0.00 0.00 0.00 3.96
4319 5104 2.247699 AGTGGGTGTACTAGGATGCA 57.752 50.000 0.00 0.00 0.00 3.96
4320 5105 3.705072 AGTTAGTGGGTGTACTAGGATGC 59.295 47.826 0.00 0.00 34.84 3.91
4321 5106 4.954202 TGAGTTAGTGGGTGTACTAGGATG 59.046 45.833 0.00 0.00 34.84 3.51
4322 5107 5.202746 TGAGTTAGTGGGTGTACTAGGAT 57.797 43.478 0.00 0.00 34.84 3.24
4323 5108 4.662966 TGAGTTAGTGGGTGTACTAGGA 57.337 45.455 0.00 0.00 34.84 2.94
4324 5109 5.202004 AGATGAGTTAGTGGGTGTACTAGG 58.798 45.833 0.00 0.00 34.84 3.02
4325 5110 7.502895 ACATAGATGAGTTAGTGGGTGTACTAG 59.497 40.741 0.00 0.00 34.84 2.57
4326 5111 7.351952 ACATAGATGAGTTAGTGGGTGTACTA 58.648 38.462 0.00 0.00 32.19 1.82
4327 5112 6.195700 ACATAGATGAGTTAGTGGGTGTACT 58.804 40.000 0.00 0.00 34.71 2.73
4328 5113 6.466885 ACATAGATGAGTTAGTGGGTGTAC 57.533 41.667 0.00 0.00 0.00 2.90
4329 5114 6.183360 CGAACATAGATGAGTTAGTGGGTGTA 60.183 42.308 0.00 0.00 0.00 2.90
4330 5115 5.394224 CGAACATAGATGAGTTAGTGGGTGT 60.394 44.000 0.00 0.00 0.00 4.16
4331 5116 5.043903 CGAACATAGATGAGTTAGTGGGTG 58.956 45.833 0.00 0.00 0.00 4.61
4332 5117 4.099573 CCGAACATAGATGAGTTAGTGGGT 59.900 45.833 0.00 0.00 0.00 4.51
4333 5118 4.341235 TCCGAACATAGATGAGTTAGTGGG 59.659 45.833 0.00 0.00 0.00 4.61
4334 5119 5.515797 TCCGAACATAGATGAGTTAGTGG 57.484 43.478 0.00 0.00 0.00 4.00
4335 5120 9.698309 AATAATCCGAACATAGATGAGTTAGTG 57.302 33.333 0.00 0.00 0.00 2.74
4336 5121 9.915629 GAATAATCCGAACATAGATGAGTTAGT 57.084 33.333 0.00 0.00 0.00 2.24
4337 5122 9.360093 GGAATAATCCGAACATAGATGAGTTAG 57.640 37.037 0.00 0.00 35.59 2.34
4355 5140 7.945134 ACTATTGCAGGATTGTTGGAATAATC 58.055 34.615 1.33 1.33 38.04 1.75
4356 5141 7.902920 ACTATTGCAGGATTGTTGGAATAAT 57.097 32.000 0.00 0.00 38.04 1.28
4357 5142 8.849168 CATACTATTGCAGGATTGTTGGAATAA 58.151 33.333 0.00 0.00 38.04 1.40
4358 5143 7.448161 CCATACTATTGCAGGATTGTTGGAATA 59.552 37.037 0.00 0.51 37.67 1.75
4359 5144 6.266103 CCATACTATTGCAGGATTGTTGGAAT 59.734 38.462 0.00 0.00 39.47 3.01
4360 5145 5.593909 CCATACTATTGCAGGATTGTTGGAA 59.406 40.000 0.00 0.00 0.00 3.53
4361 5146 5.132502 CCATACTATTGCAGGATTGTTGGA 58.867 41.667 0.00 0.00 0.00 3.53
4362 5147 4.279169 CCCATACTATTGCAGGATTGTTGG 59.721 45.833 0.00 0.00 0.00 3.77
4363 5148 5.009010 GTCCCATACTATTGCAGGATTGTTG 59.991 44.000 0.00 0.00 0.00 3.33
4364 5149 5.133221 GTCCCATACTATTGCAGGATTGTT 58.867 41.667 0.00 0.00 0.00 2.83
4365 5150 4.446311 GGTCCCATACTATTGCAGGATTGT 60.446 45.833 0.00 0.00 0.00 2.71
4366 5151 4.074970 GGTCCCATACTATTGCAGGATTG 58.925 47.826 0.00 0.00 0.00 2.67
4367 5152 3.721575 TGGTCCCATACTATTGCAGGATT 59.278 43.478 0.00 0.00 0.00 3.01
4368 5153 3.326521 TGGTCCCATACTATTGCAGGAT 58.673 45.455 0.00 0.00 0.00 3.24
4369 5154 2.770447 TGGTCCCATACTATTGCAGGA 58.230 47.619 0.00 0.00 0.00 3.86
4370 5155 3.480470 CTTGGTCCCATACTATTGCAGG 58.520 50.000 0.00 0.00 0.00 4.85
4371 5156 2.880890 GCTTGGTCCCATACTATTGCAG 59.119 50.000 0.00 0.00 0.00 4.41
4372 5157 2.240921 TGCTTGGTCCCATACTATTGCA 59.759 45.455 0.00 0.00 0.00 4.08
4373 5158 2.880890 CTGCTTGGTCCCATACTATTGC 59.119 50.000 0.00 0.00 0.00 3.56
4374 5159 4.130118 GACTGCTTGGTCCCATACTATTG 58.870 47.826 0.00 0.00 0.00 1.90
4375 5160 3.780294 TGACTGCTTGGTCCCATACTATT 59.220 43.478 0.00 0.00 35.54 1.73
4376 5161 3.384168 TGACTGCTTGGTCCCATACTAT 58.616 45.455 0.00 0.00 35.54 2.12
4377 5162 2.766263 CTGACTGCTTGGTCCCATACTA 59.234 50.000 0.00 0.00 35.54 1.82
4378 5163 1.556911 CTGACTGCTTGGTCCCATACT 59.443 52.381 0.00 0.00 35.54 2.12
4379 5164 1.407437 CCTGACTGCTTGGTCCCATAC 60.407 57.143 0.00 0.00 35.54 2.39
4380 5165 0.911769 CCTGACTGCTTGGTCCCATA 59.088 55.000 0.00 0.00 35.54 2.74
4381 5166 0.842030 TCCTGACTGCTTGGTCCCAT 60.842 55.000 0.00 0.00 35.54 4.00
4382 5167 1.461268 TCCTGACTGCTTGGTCCCA 60.461 57.895 0.00 0.00 35.54 4.37
4383 5168 1.003233 GTCCTGACTGCTTGGTCCC 60.003 63.158 0.00 0.00 35.54 4.46
4384 5169 0.108585 TTGTCCTGACTGCTTGGTCC 59.891 55.000 0.00 0.00 35.54 4.46
4385 5170 1.230324 GTTGTCCTGACTGCTTGGTC 58.770 55.000 0.00 0.00 36.81 4.02
4386 5171 0.546122 TGTTGTCCTGACTGCTTGGT 59.454 50.000 0.00 0.00 0.00 3.67
4387 5172 1.679139 TTGTTGTCCTGACTGCTTGG 58.321 50.000 0.00 0.00 0.00 3.61
4388 5173 3.316029 TCATTTGTTGTCCTGACTGCTTG 59.684 43.478 0.00 0.00 0.00 4.01
4389 5174 3.316308 GTCATTTGTTGTCCTGACTGCTT 59.684 43.478 0.00 0.00 36.07 3.91
4390 5175 2.880890 GTCATTTGTTGTCCTGACTGCT 59.119 45.455 0.00 0.00 36.07 4.24
4391 5176 2.618241 TGTCATTTGTTGTCCTGACTGC 59.382 45.455 0.00 0.00 38.98 4.40
4392 5177 4.898829 TTGTCATTTGTTGTCCTGACTG 57.101 40.909 0.00 0.00 38.98 3.51
4393 5178 5.221303 CCATTTGTCATTTGTTGTCCTGACT 60.221 40.000 0.00 0.00 38.98 3.41
4394 5179 4.984161 CCATTTGTCATTTGTTGTCCTGAC 59.016 41.667 0.00 0.00 38.74 3.51
4395 5180 4.648762 ACCATTTGTCATTTGTTGTCCTGA 59.351 37.500 0.00 0.00 0.00 3.86
4396 5181 4.947645 ACCATTTGTCATTTGTTGTCCTG 58.052 39.130 0.00 0.00 0.00 3.86
4397 5182 5.278266 CGTACCATTTGTCATTTGTTGTCCT 60.278 40.000 0.00 0.00 0.00 3.85
4398 5183 4.915085 CGTACCATTTGTCATTTGTTGTCC 59.085 41.667 0.00 0.00 0.00 4.02
4399 5184 5.753744 TCGTACCATTTGTCATTTGTTGTC 58.246 37.500 0.00 0.00 0.00 3.18
4400 5185 5.529430 TCTCGTACCATTTGTCATTTGTTGT 59.471 36.000 0.00 0.00 0.00 3.32
4401 5186 5.851177 GTCTCGTACCATTTGTCATTTGTTG 59.149 40.000 0.00 0.00 0.00 3.33
4402 5187 5.333798 CGTCTCGTACCATTTGTCATTTGTT 60.334 40.000 0.00 0.00 0.00 2.83
4403 5188 4.151689 CGTCTCGTACCATTTGTCATTTGT 59.848 41.667 0.00 0.00 0.00 2.83
4404 5189 4.637968 CGTCTCGTACCATTTGTCATTTG 58.362 43.478 0.00 0.00 0.00 2.32
4405 5190 3.124636 GCGTCTCGTACCATTTGTCATTT 59.875 43.478 0.00 0.00 0.00 2.32
4406 5191 2.671396 GCGTCTCGTACCATTTGTCATT 59.329 45.455 0.00 0.00 0.00 2.57
4407 5192 2.268298 GCGTCTCGTACCATTTGTCAT 58.732 47.619 0.00 0.00 0.00 3.06
4408 5193 1.705256 GCGTCTCGTACCATTTGTCA 58.295 50.000 0.00 0.00 0.00 3.58
4409 5194 0.638746 CGCGTCTCGTACCATTTGTC 59.361 55.000 0.00 0.00 0.00 3.18
4410 5195 0.734942 CCGCGTCTCGTACCATTTGT 60.735 55.000 4.92 0.00 36.19 2.83
4411 5196 1.995991 CCGCGTCTCGTACCATTTG 59.004 57.895 4.92 0.00 36.19 2.32
4412 5197 1.808390 GCCGCGTCTCGTACCATTT 60.808 57.895 4.92 0.00 36.19 2.32
4413 5198 2.202703 GCCGCGTCTCGTACCATT 60.203 61.111 4.92 0.00 36.19 3.16
4414 5199 4.203076 GGCCGCGTCTCGTACCAT 62.203 66.667 4.92 0.00 36.19 3.55
4417 5202 4.549516 GAGGGCCGCGTCTCGTAC 62.550 72.222 4.92 0.00 36.19 3.67
4437 5222 3.551407 GAGGGATGAGGGGGCGAC 61.551 72.222 0.00 0.00 0.00 5.19
4438 5223 3.332393 AAGAGGGATGAGGGGGCGA 62.332 63.158 0.00 0.00 0.00 5.54
4439 5224 2.770048 AAGAGGGATGAGGGGGCG 60.770 66.667 0.00 0.00 0.00 6.13
4440 5225 2.456443 GGAAGAGGGATGAGGGGGC 61.456 68.421 0.00 0.00 0.00 5.80
4441 5226 2.143419 CGGAAGAGGGATGAGGGGG 61.143 68.421 0.00 0.00 0.00 5.40
4442 5227 1.383248 ACGGAAGAGGGATGAGGGG 60.383 63.158 0.00 0.00 0.00 4.79
4443 5228 1.403687 GGACGGAAGAGGGATGAGGG 61.404 65.000 0.00 0.00 0.00 4.30
4444 5229 1.403687 GGGACGGAAGAGGGATGAGG 61.404 65.000 0.00 0.00 0.00 3.86
4445 5230 0.397816 AGGGACGGAAGAGGGATGAG 60.398 60.000 0.00 0.00 0.00 2.90
4446 5231 0.042731 AAGGGACGGAAGAGGGATGA 59.957 55.000 0.00 0.00 0.00 2.92
4447 5232 0.179000 CAAGGGACGGAAGAGGGATG 59.821 60.000 0.00 0.00 0.00 3.51
4448 5233 1.627297 GCAAGGGACGGAAGAGGGAT 61.627 60.000 0.00 0.00 0.00 3.85
4449 5234 2.291043 GCAAGGGACGGAAGAGGGA 61.291 63.158 0.00 0.00 0.00 4.20
4450 5235 2.269241 GCAAGGGACGGAAGAGGG 59.731 66.667 0.00 0.00 0.00 4.30
4451 5236 2.269241 GGCAAGGGACGGAAGAGG 59.731 66.667 0.00 0.00 0.00 3.69
4452 5237 1.376037 GTGGCAAGGGACGGAAGAG 60.376 63.158 0.00 0.00 0.00 2.85
4453 5238 2.747686 GTGGCAAGGGACGGAAGA 59.252 61.111 0.00 0.00 0.00 2.87
4454 5239 2.359975 GGTGGCAAGGGACGGAAG 60.360 66.667 0.00 0.00 0.00 3.46
4455 5240 4.323477 CGGTGGCAAGGGACGGAA 62.323 66.667 0.00 0.00 0.00 4.30
4462 5247 4.020617 TCTCCAGCGGTGGCAAGG 62.021 66.667 28.72 17.03 44.60 3.61
4463 5248 2.743928 GTCTCCAGCGGTGGCAAG 60.744 66.667 28.72 21.01 44.60 4.01
4464 5249 4.680237 CGTCTCCAGCGGTGGCAA 62.680 66.667 28.72 15.74 44.60 4.52
4512 5297 3.699134 GATCCCCGCCACCACCTTC 62.699 68.421 0.00 0.00 0.00 3.46
4513 5298 3.728373 GATCCCCGCCACCACCTT 61.728 66.667 0.00 0.00 0.00 3.50
4514 5299 4.741239 AGATCCCCGCCACCACCT 62.741 66.667 0.00 0.00 0.00 4.00
4515 5300 4.176752 GAGATCCCCGCCACCACC 62.177 72.222 0.00 0.00 0.00 4.61
4516 5301 4.530857 CGAGATCCCCGCCACCAC 62.531 72.222 0.00 0.00 0.00 4.16
4540 5325 4.359455 GGCGGACGGGATCGATCC 62.359 72.222 32.57 32.57 46.41 3.36
4541 5326 3.296054 AGGCGGACGGGATCGATC 61.296 66.667 17.36 17.36 40.11 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.