Multiple sequence alignment - TraesCS6B01G000500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G000500 chr6B 100.000 2510 0 0 1 2510 196644 199153 0.000000e+00 4636.0
1 TraesCS6B01G000500 chr6B 87.601 1113 98 17 56 1151 222415 223504 0.000000e+00 1254.0
2 TraesCS6B01G000500 chr6B 79.979 954 137 24 938 1848 185315 186257 0.000000e+00 654.0
3 TraesCS6B01G000500 chr6B 89.069 247 24 3 2266 2510 87920164 87920409 1.130000e-78 303.0
4 TraesCS6B01G000500 chr6B 89.904 208 17 4 2070 2274 87897161 87897367 5.320000e-67 265.0
5 TraesCS6B01G000500 chr6B 80.172 348 36 18 1258 1601 223507 223825 1.940000e-56 230.0
6 TraesCS6B01G000500 chr6B 87.817 197 23 1 1871 2066 224047 224243 1.940000e-56 230.0
7 TraesCS6B01G000500 chr6B 83.920 199 31 1 54 252 492863193 492863390 3.300000e-44 189.0
8 TraesCS6B01G000500 chr6D 88.564 1504 131 23 118 1605 2431249 2432727 0.000000e+00 1786.0
9 TraesCS6B01G000500 chr6D 94.184 619 31 2 1242 1855 2426221 2426839 0.000000e+00 939.0
10 TraesCS6B01G000500 chr6D 93.218 634 28 12 443 1068 2425585 2426211 0.000000e+00 918.0
11 TraesCS6B01G000500 chr6D 91.584 404 30 3 1 404 2425197 2425596 2.820000e-154 555.0
12 TraesCS6B01G000500 chr6D 82.540 441 57 12 1605 2038 2419587 2420014 1.100000e-98 370.0
13 TraesCS6B01G000500 chr6D 85.787 197 26 2 1871 2066 2432942 2433137 9.100000e-50 207.0
14 TraesCS6B01G000500 chr6D 75.481 416 68 24 696 1087 2477892 2478297 3.320000e-39 172.0
15 TraesCS6B01G000500 chr6D 94.048 84 4 1 1952 2034 2426878 2426961 2.620000e-25 126.0
16 TraesCS6B01G000500 chr6D 91.765 85 7 0 1521 1605 2419475 2419559 4.390000e-23 119.0
17 TraesCS6B01G000500 chr7B 93.065 447 26 5 2068 2510 206626802 206626357 0.000000e+00 649.0
18 TraesCS6B01G000500 chr7B 80.526 190 35 2 64 252 622840098 622840286 7.240000e-31 145.0
19 TraesCS6B01G000500 chr5B 90.433 439 37 5 2074 2509 636352100 636351664 7.790000e-160 573.0
20 TraesCS6B01G000500 chr6A 81.859 441 60 12 1605 2038 1516386 1516813 1.100000e-93 353.0
21 TraesCS6B01G000500 chr6A 83.333 210 24 7 889 1089 1655578 1655785 1.530000e-42 183.0
22 TraesCS6B01G000500 chr3D 86.496 274 32 5 2239 2510 467974002 467974272 1.890000e-76 296.0
23 TraesCS6B01G000500 chr3D 77.193 456 78 22 2069 2509 380856594 380857038 2.490000e-60 243.0
24 TraesCS6B01G000500 chr2B 80.627 351 50 13 2173 2509 306785589 306785243 3.200000e-64 255.0
25 TraesCS6B01G000500 chr2D 90.769 130 10 2 2069 2196 632806125 632806254 3.320000e-39 172.0
26 TraesCS6B01G000500 chr2D 95.238 84 3 1 2428 2510 632806337 632806420 5.630000e-27 132.0
27 TraesCS6B01G000500 chr2D 92.771 83 4 2 2160 2240 632806254 632806336 4.390000e-23 119.0
28 TraesCS6B01G000500 chr2A 82.249 169 21 5 2337 2500 602690637 602690801 1.210000e-28 137.0
29 TraesCS6B01G000500 chr3B 73.529 374 77 16 2068 2427 496677829 496678194 3.390000e-24 122.0
30 TraesCS6B01G000500 chr5A 90.323 62 5 1 2448 2509 520666250 520666310 2.070000e-11 80.5
31 TraesCS6B01G000500 chrUn 97.059 34 0 1 1609 1642 29806696 29806664 3.490000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G000500 chr6B 196644 199153 2509 False 4636.000000 4636 100.000000 1 2510 1 chr6B.!!$F2 2509
1 TraesCS6B01G000500 chr6B 185315 186257 942 False 654.000000 654 79.979000 938 1848 1 chr6B.!!$F1 910
2 TraesCS6B01G000500 chr6B 222415 224243 1828 False 571.333333 1254 85.196667 56 2066 3 chr6B.!!$F6 2010
3 TraesCS6B01G000500 chr6D 2431249 2433137 1888 False 996.500000 1786 87.175500 118 2066 2 chr6D.!!$F4 1948
4 TraesCS6B01G000500 chr6D 2425197 2426961 1764 False 634.500000 939 93.258500 1 2034 4 chr6D.!!$F3 2033
5 TraesCS6B01G000500 chr6D 2419475 2420014 539 False 244.500000 370 87.152500 1521 2038 2 chr6D.!!$F2 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 121 0.400213 CCCTTTCAGCACCCTGTGTA 59.6 55.0 0.0 0.0 40.09 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 1995 0.606604 TGCGGGAACTGAGTACTTCC 59.393 55.0 0.0 0.0 36.31 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 3.700577 AAAAATCATGGCGCACGAG 57.299 47.368 10.83 0.00 0.00 4.18
114 115 3.365265 CACGCCCTTTCAGCACCC 61.365 66.667 0.00 0.00 0.00 4.61
120 121 0.400213 CCCTTTCAGCACCCTGTGTA 59.600 55.000 0.00 0.00 40.09 2.90
157 158 0.448990 CATCGTTGATGCACACCCAG 59.551 55.000 0.00 0.00 33.17 4.45
168 169 2.303175 GCACACCCAGACCAAGTTTTA 58.697 47.619 0.00 0.00 0.00 1.52
220 221 5.391312 AGCAACAAACTGACTTTTCTTGT 57.609 34.783 0.00 0.00 0.00 3.16
256 257 7.011773 CACTTGTGATGTAATTGACTCGAAAG 58.988 38.462 0.00 0.00 0.00 2.62
320 321 9.710900 ACAATATTCGCATGTTGAGAGATATAA 57.289 29.630 11.14 0.00 35.56 0.98
328 329 7.327275 CGCATGTTGAGAGATATAAGTTAGTCC 59.673 40.741 0.00 0.00 0.00 3.85
369 371 9.747898 TGGTGTGAATTGGTTACTATTATTTCT 57.252 29.630 0.00 0.00 0.00 2.52
404 406 8.465999 TGATTGTACAAAACATTAATAGCTGGG 58.534 33.333 13.23 0.00 38.10 4.45
407 409 7.822658 TGTACAAAACATTAATAGCTGGGTTC 58.177 34.615 0.00 0.00 31.43 3.62
484 496 1.939132 GGGGGAGGGGAATTTGGGA 60.939 63.158 0.00 0.00 0.00 4.37
580 594 2.194388 CTCCATGCTGAGGTGGCAGT 62.194 60.000 0.00 0.00 43.15 4.40
621 635 2.035066 GTGCATCATAACCAATGCTCCC 59.965 50.000 8.59 0.00 46.64 4.30
629 643 2.671070 CAATGCTCCCCAGGTCGT 59.329 61.111 0.00 0.00 0.00 4.34
631 645 1.026718 CAATGCTCCCCAGGTCGTTC 61.027 60.000 0.00 0.00 0.00 3.95
632 646 2.521958 AATGCTCCCCAGGTCGTTCG 62.522 60.000 0.00 0.00 0.00 3.95
750 764 6.685527 TTTGCCACTAAAATTTTGAAACCC 57.314 33.333 13.76 0.00 0.00 4.11
880 898 2.380064 AGGGATGACTGGCTCTCTAG 57.620 55.000 0.00 0.00 0.00 2.43
897 915 7.217200 GCTCTCTAGTCTCTCAAATCTCTCTA 58.783 42.308 0.00 0.00 0.00 2.43
926 946 6.442112 TGTATGATCGAGTCATGAGTTGATC 58.558 40.000 35.10 35.10 46.85 2.92
936 956 4.033358 GTCATGAGTTGATCGGTAGCAAAG 59.967 45.833 0.00 0.00 36.54 2.77
947 967 7.047891 TGATCGGTAGCAAAGTATTTCTCATT 58.952 34.615 0.00 0.00 35.03 2.57
1070 1093 1.068281 ACATCTCGTATGCTCTGCCAG 59.932 52.381 0.00 0.00 0.00 4.85
1090 1113 3.192001 CAGTGTTGCTCAATGTAAGGCAT 59.808 43.478 0.00 0.00 37.36 4.40
1125 1148 4.644103 ATTTCTGTATCTGCACAATGCC 57.356 40.909 0.00 0.00 44.23 4.40
1128 1151 4.063998 TCTGTATCTGCACAATGCCTAG 57.936 45.455 0.00 0.00 44.23 3.02
1154 1177 9.048446 GTCTTTGTTCACTGGTTAATGTACTTA 57.952 33.333 0.00 0.00 0.00 2.24
1173 1196 9.927081 TGTACTTAGTATAGTTAGTAAGGCCTT 57.073 33.333 24.18 24.18 42.20 4.35
1176 1199 9.712250 ACTTAGTATAGTTAGTAAGGCCTTTCT 57.288 33.333 26.08 25.85 42.20 2.52
1178 1201 9.933240 TTAGTATAGTTAGTAAGGCCTTTCTCT 57.067 33.333 26.09 19.80 0.00 3.10
1179 1202 8.841754 AGTATAGTTAGTAAGGCCTTTCTCTT 57.158 34.615 26.09 15.53 0.00 2.85
1180 1203 9.269494 AGTATAGTTAGTAAGGCCTTTCTCTTT 57.731 33.333 26.09 15.62 0.00 2.52
1181 1204 9.887629 GTATAGTTAGTAAGGCCTTTCTCTTTT 57.112 33.333 26.09 13.69 0.00 2.27
1182 1205 8.794335 ATAGTTAGTAAGGCCTTTCTCTTTTG 57.206 34.615 26.09 0.00 0.00 2.44
1183 1206 5.473846 AGTTAGTAAGGCCTTTCTCTTTTGC 59.526 40.000 26.09 11.93 0.00 3.68
1184 1207 4.105754 AGTAAGGCCTTTCTCTTTTGCT 57.894 40.909 26.08 1.84 0.00 3.91
1185 1208 4.474394 AGTAAGGCCTTTCTCTTTTGCTT 58.526 39.130 26.08 0.00 0.00 3.91
1186 1209 4.520874 AGTAAGGCCTTTCTCTTTTGCTTC 59.479 41.667 26.08 0.00 0.00 3.86
1187 1210 3.235750 AGGCCTTTCTCTTTTGCTTCT 57.764 42.857 0.00 0.00 0.00 2.85
1188 1211 3.570540 AGGCCTTTCTCTTTTGCTTCTT 58.429 40.909 0.00 0.00 0.00 2.52
1189 1212 3.320256 AGGCCTTTCTCTTTTGCTTCTTG 59.680 43.478 0.00 0.00 0.00 3.02
1190 1213 3.068732 GGCCTTTCTCTTTTGCTTCTTGT 59.931 43.478 0.00 0.00 0.00 3.16
1191 1214 4.294232 GCCTTTCTCTTTTGCTTCTTGTC 58.706 43.478 0.00 0.00 0.00 3.18
1192 1215 4.037327 GCCTTTCTCTTTTGCTTCTTGTCT 59.963 41.667 0.00 0.00 0.00 3.41
1193 1216 5.239525 GCCTTTCTCTTTTGCTTCTTGTCTA 59.760 40.000 0.00 0.00 0.00 2.59
1194 1217 6.238759 GCCTTTCTCTTTTGCTTCTTGTCTAA 60.239 38.462 0.00 0.00 0.00 2.10
1195 1218 7.522889 GCCTTTCTCTTTTGCTTCTTGTCTAAT 60.523 37.037 0.00 0.00 0.00 1.73
1196 1219 8.020244 CCTTTCTCTTTTGCTTCTTGTCTAATC 58.980 37.037 0.00 0.00 0.00 1.75
1197 1220 8.682936 TTTCTCTTTTGCTTCTTGTCTAATCT 57.317 30.769 0.00 0.00 0.00 2.40
1198 1221 9.778741 TTTCTCTTTTGCTTCTTGTCTAATCTA 57.221 29.630 0.00 0.00 0.00 1.98
1199 1222 8.764524 TCTCTTTTGCTTCTTGTCTAATCTAC 57.235 34.615 0.00 0.00 0.00 2.59
1200 1223 8.589338 TCTCTTTTGCTTCTTGTCTAATCTACT 58.411 33.333 0.00 0.00 0.00 2.57
1201 1224 8.539770 TCTTTTGCTTCTTGTCTAATCTACTG 57.460 34.615 0.00 0.00 0.00 2.74
1202 1225 6.727824 TTTGCTTCTTGTCTAATCTACTGC 57.272 37.500 0.00 0.00 0.00 4.40
1203 1226 4.424626 TGCTTCTTGTCTAATCTACTGCG 58.575 43.478 0.00 0.00 0.00 5.18
1204 1227 4.082190 TGCTTCTTGTCTAATCTACTGCGT 60.082 41.667 0.00 0.00 0.00 5.24
1205 1228 4.501198 GCTTCTTGTCTAATCTACTGCGTC 59.499 45.833 0.00 0.00 0.00 5.19
1206 1229 5.638596 TTCTTGTCTAATCTACTGCGTCA 57.361 39.130 0.00 0.00 0.00 4.35
1207 1230 5.836821 TCTTGTCTAATCTACTGCGTCAT 57.163 39.130 0.00 0.00 0.00 3.06
1208 1231 6.208988 TCTTGTCTAATCTACTGCGTCATT 57.791 37.500 0.00 0.00 0.00 2.57
1209 1232 6.631016 TCTTGTCTAATCTACTGCGTCATTT 58.369 36.000 0.00 0.00 0.00 2.32
1210 1233 7.768240 TCTTGTCTAATCTACTGCGTCATTTA 58.232 34.615 0.00 0.00 0.00 1.40
1211 1234 8.414003 TCTTGTCTAATCTACTGCGTCATTTAT 58.586 33.333 0.00 0.00 0.00 1.40
1212 1235 8.942338 TTGTCTAATCTACTGCGTCATTTATT 57.058 30.769 0.00 0.00 0.00 1.40
1213 1236 8.942338 TGTCTAATCTACTGCGTCATTTATTT 57.058 30.769 0.00 0.00 0.00 1.40
1272 1399 9.268268 TGTCCGTTTCTTATTATTCCATGATAC 57.732 33.333 0.00 0.00 0.00 2.24
1396 1526 4.448732 GCTTCCATTGTTTGACAAATGACC 59.551 41.667 3.49 0.00 41.96 4.02
1416 1546 2.090719 CCTCCTCTACCCCACTATGGAA 60.091 54.545 0.00 0.00 40.96 3.53
1424 1554 1.063717 CCCCACTATGGAAAGGTGCAT 60.064 52.381 0.00 0.00 40.96 3.96
1441 1575 1.656095 GCATGAGAGCGTGTAAGACAC 59.344 52.381 0.00 0.00 45.26 3.67
1501 1647 1.063417 CCCCTCCTCGTCCTTTACCTA 60.063 57.143 0.00 0.00 0.00 3.08
1515 1661 7.009907 CGTCCTTTACCTACTCCTTAATTTTCG 59.990 40.741 0.00 0.00 0.00 3.46
1675 1853 2.609046 AGCTACGAAATGGCTCCCT 58.391 52.632 0.00 0.00 42.51 4.20
1701 1879 1.134280 ACATGCTCCGGAAATCTGAGG 60.134 52.381 5.23 0.00 0.00 3.86
1726 1906 2.644798 ACAACTTACCTTGGGATCTGCT 59.355 45.455 0.00 0.00 0.00 4.24
1738 1925 6.127897 CCTTGGGATCTGCTAGTTAACTTTTG 60.128 42.308 14.49 6.06 0.00 2.44
1751 1944 7.753309 AGTTAACTTTTGTGCCACATATACA 57.247 32.000 1.12 0.00 0.00 2.29
1801 1995 0.104304 GGTCTGGGCCATACTGTACG 59.896 60.000 19.96 0.36 0.00 3.67
1848 2042 4.276183 TCCTCTCTTTAAGTCCATCGATCG 59.724 45.833 9.36 9.36 0.00 3.69
1849 2043 4.276183 CCTCTCTTTAAGTCCATCGATCGA 59.724 45.833 21.86 21.86 0.00 3.59
1852 2046 5.765677 TCTCTTTAAGTCCATCGATCGATCT 59.234 40.000 27.20 18.36 31.62 2.75
1854 2048 5.765677 TCTTTAAGTCCATCGATCGATCTCT 59.234 40.000 27.20 20.37 31.62 3.10
1856 2050 3.913548 AGTCCATCGATCGATCTCTTG 57.086 47.619 27.20 17.13 31.62 3.02
1859 2053 2.560105 TCCATCGATCGATCTCTTGCAT 59.440 45.455 27.20 1.58 31.62 3.96
1860 2054 3.758554 TCCATCGATCGATCTCTTGCATA 59.241 43.478 27.20 3.95 31.62 3.14
1861 2055 4.104066 CCATCGATCGATCTCTTGCATAG 58.896 47.826 27.20 12.00 31.62 2.23
1862 2056 4.142513 CCATCGATCGATCTCTTGCATAGA 60.143 45.833 27.20 9.67 31.62 1.98
1863 2057 5.397326 CATCGATCGATCTCTTGCATAGAA 58.603 41.667 27.20 0.00 31.62 2.10
1864 2058 5.438761 TCGATCGATCTCTTGCATAGAAA 57.561 39.130 22.43 0.00 30.91 2.52
1865 2059 5.831997 TCGATCGATCTCTTGCATAGAAAA 58.168 37.500 22.43 0.00 30.91 2.29
1866 2060 5.687730 TCGATCGATCTCTTGCATAGAAAAC 59.312 40.000 22.43 0.00 30.91 2.43
1960 2154 2.280628 CATTGAGTTCTTCTACCCGGC 58.719 52.381 0.00 0.00 0.00 6.13
2038 2233 1.496429 AGCTCCCATACCCAAATCAGG 59.504 52.381 0.00 0.00 0.00 3.86
2066 2261 2.501261 GTAAAACGAGGGGCTTCTTGT 58.499 47.619 0.00 0.00 33.04 3.16
2067 2262 1.318576 AAAACGAGGGGCTTCTTGTG 58.681 50.000 0.00 0.00 32.11 3.33
2068 2263 0.537371 AAACGAGGGGCTTCTTGTGG 60.537 55.000 0.00 0.00 32.11 4.17
2069 2264 2.045926 CGAGGGGCTTCTTGTGGG 60.046 66.667 0.00 0.00 0.00 4.61
2070 2265 2.356667 GAGGGGCTTCTTGTGGGG 59.643 66.667 0.00 0.00 0.00 4.96
2071 2266 2.121506 AGGGGCTTCTTGTGGGGA 60.122 61.111 0.00 0.00 0.00 4.81
2072 2267 2.035783 GGGGCTTCTTGTGGGGAC 59.964 66.667 0.00 0.00 0.00 4.46
2073 2268 2.539081 GGGGCTTCTTGTGGGGACT 61.539 63.158 0.00 0.00 0.00 3.85
2074 2269 1.460699 GGGCTTCTTGTGGGGACTT 59.539 57.895 0.00 0.00 0.00 3.01
2075 2270 0.609406 GGGCTTCTTGTGGGGACTTC 60.609 60.000 0.00 0.00 0.00 3.01
2076 2271 0.609406 GGCTTCTTGTGGGGACTTCC 60.609 60.000 0.00 0.00 0.00 3.46
2077 2272 0.402121 GCTTCTTGTGGGGACTTCCT 59.598 55.000 0.00 0.00 35.95 3.36
2078 2273 1.628846 GCTTCTTGTGGGGACTTCCTA 59.371 52.381 0.00 0.00 35.95 2.94
2079 2274 2.615747 GCTTCTTGTGGGGACTTCCTAC 60.616 54.545 0.00 0.00 46.05 3.18
2080 2275 1.652947 TCTTGTGGGGACTTCCTACC 58.347 55.000 0.00 0.00 45.36 3.18
2081 2276 1.151413 TCTTGTGGGGACTTCCTACCT 59.849 52.381 0.00 0.00 45.36 3.08
2082 2277 1.279271 CTTGTGGGGACTTCCTACCTG 59.721 57.143 0.00 0.00 45.36 4.00
2083 2278 0.192566 TGTGGGGACTTCCTACCTGT 59.807 55.000 0.00 0.00 45.36 4.00
2084 2279 0.903236 GTGGGGACTTCCTACCTGTC 59.097 60.000 0.00 0.00 40.71 3.51
2085 2280 0.613853 TGGGGACTTCCTACCTGTCG 60.614 60.000 0.00 0.00 35.95 4.35
2086 2281 1.516423 GGGACTTCCTACCTGTCGC 59.484 63.158 0.00 0.00 36.72 5.19
2087 2282 1.255667 GGGACTTCCTACCTGTCGCA 61.256 60.000 0.00 0.00 41.35 5.10
2088 2283 0.824759 GGACTTCCTACCTGTCGCAT 59.175 55.000 0.00 0.00 0.00 4.73
2089 2284 1.207329 GGACTTCCTACCTGTCGCATT 59.793 52.381 0.00 0.00 0.00 3.56
2090 2285 2.541556 GACTTCCTACCTGTCGCATTC 58.458 52.381 0.00 0.00 0.00 2.67
2091 2286 2.166664 GACTTCCTACCTGTCGCATTCT 59.833 50.000 0.00 0.00 0.00 2.40
2092 2287 2.093973 ACTTCCTACCTGTCGCATTCTG 60.094 50.000 0.00 0.00 0.00 3.02
2093 2288 0.175760 TCCTACCTGTCGCATTCTGC 59.824 55.000 0.00 0.00 40.69 4.26
2111 2306 2.434774 GGCAGAAGGACGGGGTTT 59.565 61.111 0.00 0.00 0.00 3.27
2112 2307 1.674651 GGCAGAAGGACGGGGTTTC 60.675 63.158 0.00 0.00 0.00 2.78
2113 2308 2.033194 GCAGAAGGACGGGGTTTCG 61.033 63.158 0.00 0.00 0.00 3.46
2114 2309 2.033194 CAGAAGGACGGGGTTTCGC 61.033 63.158 0.00 0.00 0.00 4.70
2115 2310 2.031465 GAAGGACGGGGTTTCGCA 59.969 61.111 0.00 0.00 0.00 5.10
2116 2311 2.281276 AAGGACGGGGTTTCGCAC 60.281 61.111 0.00 0.00 0.00 5.34
2117 2312 2.999739 GAAGGACGGGGTTTCGCACA 63.000 60.000 0.00 0.00 0.00 4.57
2118 2313 3.047877 GGACGGGGTTTCGCACAG 61.048 66.667 0.00 0.00 0.00 3.66
2119 2314 3.047877 GACGGGGTTTCGCACAGG 61.048 66.667 0.00 0.00 0.00 4.00
2151 2346 2.906897 GGCCGGCCCACATATGTG 60.907 66.667 36.64 26.02 45.23 3.21
2152 2347 3.595758 GCCGGCCCACATATGTGC 61.596 66.667 27.27 18.12 44.34 4.57
2153 2348 2.906897 CCGGCCCACATATGTGCC 60.907 66.667 27.27 24.28 44.34 5.01
2154 2349 3.279116 CGGCCCACATATGTGCCG 61.279 66.667 32.49 32.49 44.34 5.69
2155 2350 3.595758 GGCCCACATATGTGCCGC 61.596 66.667 27.27 26.67 44.34 6.53
2156 2351 2.516930 GCCCACATATGTGCCGCT 60.517 61.111 27.27 0.00 44.34 5.52
2157 2352 1.227823 GCCCACATATGTGCCGCTA 60.228 57.895 27.27 0.00 44.34 4.26
2158 2353 1.230635 GCCCACATATGTGCCGCTAG 61.231 60.000 27.27 13.98 44.34 3.42
2159 2354 0.106708 CCCACATATGTGCCGCTAGT 59.893 55.000 27.27 0.00 44.34 2.57
2160 2355 1.475034 CCCACATATGTGCCGCTAGTT 60.475 52.381 27.27 0.00 44.34 2.24
2161 2356 1.599071 CCACATATGTGCCGCTAGTTG 59.401 52.381 27.27 9.07 44.34 3.16
2162 2357 1.003545 CACATATGTGCCGCTAGTTGC 60.004 52.381 22.27 0.00 39.39 4.17
2163 2358 1.134401 ACATATGTGCCGCTAGTTGCT 60.134 47.619 7.78 0.00 40.11 3.91
2164 2359 1.262417 CATATGTGCCGCTAGTTGCTG 59.738 52.381 7.08 0.00 40.11 4.41
2165 2360 0.249120 TATGTGCCGCTAGTTGCTGT 59.751 50.000 7.08 0.00 40.11 4.40
2166 2361 1.021390 ATGTGCCGCTAGTTGCTGTC 61.021 55.000 7.08 0.45 40.11 3.51
2167 2362 2.432456 TGCCGCTAGTTGCTGTCG 60.432 61.111 7.08 0.00 40.11 4.35
2168 2363 2.432628 GCCGCTAGTTGCTGTCGT 60.433 61.111 0.00 0.00 40.11 4.34
2169 2364 2.730672 GCCGCTAGTTGCTGTCGTG 61.731 63.158 0.00 0.00 40.11 4.35
2170 2365 2.730672 CCGCTAGTTGCTGTCGTGC 61.731 63.158 0.00 0.00 40.11 5.34
2171 2366 2.021584 CGCTAGTTGCTGTCGTGCA 61.022 57.895 0.00 0.00 41.65 4.57
2180 2375 4.560136 TTGCTGTCGTGCAATAAAAAGA 57.440 36.364 8.58 0.00 46.43 2.52
2181 2376 4.560136 TGCTGTCGTGCAATAAAAAGAA 57.440 36.364 0.00 0.00 40.29 2.52
2182 2377 4.926244 TGCTGTCGTGCAATAAAAAGAAA 58.074 34.783 0.00 0.00 40.29 2.52
2183 2378 4.737765 TGCTGTCGTGCAATAAAAAGAAAC 59.262 37.500 0.00 0.00 40.29 2.78
2184 2379 4.737765 GCTGTCGTGCAATAAAAAGAAACA 59.262 37.500 0.00 0.00 0.00 2.83
2185 2380 5.108254 GCTGTCGTGCAATAAAAAGAAACAG 60.108 40.000 0.00 0.00 34.87 3.16
2186 2381 6.125327 TGTCGTGCAATAAAAAGAAACAGA 57.875 33.333 0.00 0.00 0.00 3.41
2187 2382 6.198687 TGTCGTGCAATAAAAAGAAACAGAG 58.801 36.000 0.00 0.00 0.00 3.35
2188 2383 6.037720 TGTCGTGCAATAAAAAGAAACAGAGA 59.962 34.615 0.00 0.00 0.00 3.10
2189 2384 6.910433 GTCGTGCAATAAAAAGAAACAGAGAA 59.090 34.615 0.00 0.00 0.00 2.87
2190 2385 7.431084 GTCGTGCAATAAAAAGAAACAGAGAAA 59.569 33.333 0.00 0.00 0.00 2.52
2191 2386 7.971168 TCGTGCAATAAAAAGAAACAGAGAAAA 59.029 29.630 0.00 0.00 0.00 2.29
2192 2387 8.261908 CGTGCAATAAAAAGAAACAGAGAAAAG 58.738 33.333 0.00 0.00 0.00 2.27
2193 2388 9.301153 GTGCAATAAAAAGAAACAGAGAAAAGA 57.699 29.630 0.00 0.00 0.00 2.52
2194 2389 9.868277 TGCAATAAAAAGAAACAGAGAAAAGAA 57.132 25.926 0.00 0.00 0.00 2.52
2201 2396 9.455847 AAAAGAAACAGAGAAAAGAATGAATCG 57.544 29.630 0.00 0.00 0.00 3.34
2202 2397 7.969536 AGAAACAGAGAAAAGAATGAATCGA 57.030 32.000 0.00 0.00 0.00 3.59
2203 2398 8.558973 AGAAACAGAGAAAAGAATGAATCGAT 57.441 30.769 0.00 0.00 0.00 3.59
2204 2399 8.663911 AGAAACAGAGAAAAGAATGAATCGATC 58.336 33.333 0.00 0.00 0.00 3.69
2205 2400 6.917217 ACAGAGAAAAGAATGAATCGATCC 57.083 37.500 0.00 0.00 0.00 3.36
2206 2401 6.409704 ACAGAGAAAAGAATGAATCGATCCA 58.590 36.000 0.00 0.00 0.00 3.41
2207 2402 6.314896 ACAGAGAAAAGAATGAATCGATCCAC 59.685 38.462 0.00 0.00 0.00 4.02
2208 2403 6.314648 CAGAGAAAAGAATGAATCGATCCACA 59.685 38.462 0.00 0.07 0.00 4.17
2209 2404 6.538021 AGAGAAAAGAATGAATCGATCCACAG 59.462 38.462 0.00 0.00 0.00 3.66
2210 2405 6.409704 AGAAAAGAATGAATCGATCCACAGA 58.590 36.000 0.00 0.00 0.00 3.41
2211 2406 6.314896 AGAAAAGAATGAATCGATCCACAGAC 59.685 38.462 0.00 0.00 0.00 3.51
2212 2407 4.065321 AGAATGAATCGATCCACAGACC 57.935 45.455 0.00 0.00 0.00 3.85
2213 2408 3.708631 AGAATGAATCGATCCACAGACCT 59.291 43.478 0.00 0.00 0.00 3.85
2214 2409 3.742433 ATGAATCGATCCACAGACCTC 57.258 47.619 0.00 0.00 0.00 3.85
2215 2410 1.405463 TGAATCGATCCACAGACCTCG 59.595 52.381 0.00 0.00 0.00 4.63
2216 2411 0.103208 AATCGATCCACAGACCTCGC 59.897 55.000 0.00 0.00 0.00 5.03
2217 2412 1.037579 ATCGATCCACAGACCTCGCA 61.038 55.000 0.00 0.00 0.00 5.10
2218 2413 1.517257 CGATCCACAGACCTCGCAC 60.517 63.158 0.00 0.00 0.00 5.34
2219 2414 1.591703 GATCCACAGACCTCGCACA 59.408 57.895 0.00 0.00 0.00 4.57
2220 2415 0.176680 GATCCACAGACCTCGCACAT 59.823 55.000 0.00 0.00 0.00 3.21
2221 2416 1.409064 GATCCACAGACCTCGCACATA 59.591 52.381 0.00 0.00 0.00 2.29
2222 2417 0.817654 TCCACAGACCTCGCACATAG 59.182 55.000 0.00 0.00 0.00 2.23
2223 2418 0.817654 CCACAGACCTCGCACATAGA 59.182 55.000 0.00 0.00 0.00 1.98
2224 2419 1.204704 CCACAGACCTCGCACATAGAA 59.795 52.381 0.00 0.00 0.00 2.10
2225 2420 2.534298 CACAGACCTCGCACATAGAAG 58.466 52.381 0.00 0.00 0.00 2.85
2226 2421 1.134965 ACAGACCTCGCACATAGAAGC 60.135 52.381 0.00 0.00 0.00 3.86
2235 2430 2.202566 GCACATAGAAGCGTCCTAACC 58.797 52.381 0.00 0.00 0.00 2.85
2236 2431 2.418197 GCACATAGAAGCGTCCTAACCA 60.418 50.000 0.00 0.00 0.00 3.67
2237 2432 3.187700 CACATAGAAGCGTCCTAACCAC 58.812 50.000 0.00 0.00 0.00 4.16
2238 2433 2.159282 ACATAGAAGCGTCCTAACCACG 60.159 50.000 0.00 0.00 40.35 4.94
2239 2434 1.825090 TAGAAGCGTCCTAACCACGA 58.175 50.000 0.00 0.00 39.75 4.35
2240 2435 0.526662 AGAAGCGTCCTAACCACGAG 59.473 55.000 0.00 0.00 39.75 4.18
2241 2436 1.077089 GAAGCGTCCTAACCACGAGC 61.077 60.000 0.00 0.00 39.75 5.03
2242 2437 2.814183 AAGCGTCCTAACCACGAGCG 62.814 60.000 0.00 0.00 39.75 5.03
2243 2438 2.202570 CGTCCTAACCACGAGCGG 60.203 66.667 0.00 0.00 39.75 5.52
2244 2439 2.968206 GTCCTAACCACGAGCGGT 59.032 61.111 0.00 0.00 42.71 5.68
2259 2454 2.205307 GCGGTTAGCCACTACACTAG 57.795 55.000 0.00 0.00 40.81 2.57
2260 2455 1.747355 GCGGTTAGCCACTACACTAGA 59.253 52.381 0.00 0.00 40.81 2.43
2261 2456 2.479219 GCGGTTAGCCACTACACTAGAC 60.479 54.545 0.00 0.00 40.81 2.59
2262 2457 2.751259 CGGTTAGCCACTACACTAGACA 59.249 50.000 0.00 0.00 34.09 3.41
2263 2458 3.380637 CGGTTAGCCACTACACTAGACAT 59.619 47.826 0.00 0.00 34.09 3.06
2264 2459 4.497674 CGGTTAGCCACTACACTAGACATC 60.498 50.000 0.00 0.00 34.09 3.06
2265 2460 4.401519 GGTTAGCCACTACACTAGACATCA 59.598 45.833 0.00 0.00 34.09 3.07
2266 2461 5.450688 GGTTAGCCACTACACTAGACATCAG 60.451 48.000 0.00 0.00 34.09 2.90
2267 2462 2.428890 AGCCACTACACTAGACATCAGC 59.571 50.000 0.00 0.00 0.00 4.26
2268 2463 2.428890 GCCACTACACTAGACATCAGCT 59.571 50.000 0.00 0.00 0.00 4.24
2269 2464 3.632604 GCCACTACACTAGACATCAGCTA 59.367 47.826 0.00 0.00 0.00 3.32
2270 2465 4.279671 GCCACTACACTAGACATCAGCTAT 59.720 45.833 0.00 0.00 0.00 2.97
2271 2466 5.473846 GCCACTACACTAGACATCAGCTATA 59.526 44.000 0.00 0.00 0.00 1.31
2272 2467 6.151985 GCCACTACACTAGACATCAGCTATAT 59.848 42.308 0.00 0.00 0.00 0.86
2273 2468 7.309499 GCCACTACACTAGACATCAGCTATATT 60.309 40.741 0.00 0.00 0.00 1.28
2274 2469 9.232473 CCACTACACTAGACATCAGCTATATTA 57.768 37.037 0.00 0.00 0.00 0.98
2282 2477 9.868277 CTAGACATCAGCTATATTAGAAAAGGG 57.132 37.037 0.00 0.00 0.00 3.95
2283 2478 7.164803 AGACATCAGCTATATTAGAAAAGGGC 58.835 38.462 0.00 0.00 0.00 5.19
2284 2479 6.841601 ACATCAGCTATATTAGAAAAGGGCA 58.158 36.000 0.00 0.00 0.00 5.36
2285 2480 6.712547 ACATCAGCTATATTAGAAAAGGGCAC 59.287 38.462 0.00 0.00 0.00 5.01
2286 2481 6.247229 TCAGCTATATTAGAAAAGGGCACA 57.753 37.500 0.00 0.00 0.00 4.57
2287 2482 6.055588 TCAGCTATATTAGAAAAGGGCACAC 58.944 40.000 0.00 0.00 0.00 3.82
2288 2483 5.239525 CAGCTATATTAGAAAAGGGCACACC 59.760 44.000 0.00 0.00 40.67 4.16
2289 2484 5.104109 AGCTATATTAGAAAAGGGCACACCA 60.104 40.000 0.00 0.00 43.89 4.17
2290 2485 5.008712 GCTATATTAGAAAAGGGCACACCAC 59.991 44.000 0.00 0.00 43.89 4.16
2291 2486 2.738587 TTAGAAAAGGGCACACCACA 57.261 45.000 0.00 0.00 43.89 4.17
2292 2487 1.975660 TAGAAAAGGGCACACCACAC 58.024 50.000 0.00 0.00 43.89 3.82
2293 2488 0.258774 AGAAAAGGGCACACCACACT 59.741 50.000 0.00 0.00 43.89 3.55
2294 2489 1.493022 AGAAAAGGGCACACCACACTA 59.507 47.619 0.00 0.00 43.89 2.74
2295 2490 2.108250 AGAAAAGGGCACACCACACTAT 59.892 45.455 0.00 0.00 43.89 2.12
2296 2491 3.329520 AGAAAAGGGCACACCACACTATA 59.670 43.478 0.00 0.00 43.89 1.31
2297 2492 3.799432 AAAGGGCACACCACACTATAA 57.201 42.857 0.00 0.00 43.89 0.98
2298 2493 3.350219 AAGGGCACACCACACTATAAG 57.650 47.619 0.00 0.00 43.89 1.73
2299 2494 2.546899 AGGGCACACCACACTATAAGA 58.453 47.619 0.00 0.00 43.89 2.10
2300 2495 2.910319 AGGGCACACCACACTATAAGAA 59.090 45.455 0.00 0.00 43.89 2.52
2301 2496 3.055094 AGGGCACACCACACTATAAGAAG 60.055 47.826 0.00 0.00 43.89 2.85
2302 2497 3.055385 GGGCACACCACACTATAAGAAGA 60.055 47.826 0.00 0.00 39.85 2.87
2303 2498 3.933332 GGCACACCACACTATAAGAAGAC 59.067 47.826 0.00 0.00 35.26 3.01
2304 2499 4.562757 GGCACACCACACTATAAGAAGACA 60.563 45.833 0.00 0.00 35.26 3.41
2305 2500 4.389077 GCACACCACACTATAAGAAGACAC 59.611 45.833 0.00 0.00 0.00 3.67
2306 2501 5.538118 CACACCACACTATAAGAAGACACA 58.462 41.667 0.00 0.00 0.00 3.72
2307 2502 5.635280 CACACCACACTATAAGAAGACACAG 59.365 44.000 0.00 0.00 0.00 3.66
2308 2503 4.627467 CACCACACTATAAGAAGACACAGC 59.373 45.833 0.00 0.00 0.00 4.40
2309 2504 4.283467 ACCACACTATAAGAAGACACAGCA 59.717 41.667 0.00 0.00 0.00 4.41
2310 2505 4.867047 CCACACTATAAGAAGACACAGCAG 59.133 45.833 0.00 0.00 0.00 4.24
2311 2506 4.867047 CACACTATAAGAAGACACAGCAGG 59.133 45.833 0.00 0.00 0.00 4.85
2312 2507 4.528596 ACACTATAAGAAGACACAGCAGGT 59.471 41.667 0.00 0.00 0.00 4.00
2320 2515 4.469883 CACAGCAGGTGTTGAGCT 57.530 55.556 1.37 0.00 42.75 4.09
2321 2516 2.711711 CACAGCAGGTGTTGAGCTT 58.288 52.632 1.37 0.00 42.75 3.74
2322 2517 1.027357 CACAGCAGGTGTTGAGCTTT 58.973 50.000 1.37 0.00 42.75 3.51
2323 2518 1.027357 ACAGCAGGTGTTGAGCTTTG 58.973 50.000 0.00 0.00 34.94 2.77
2324 2519 0.313043 CAGCAGGTGTTGAGCTTTGG 59.687 55.000 0.00 0.00 36.26 3.28
2325 2520 0.183492 AGCAGGTGTTGAGCTTTGGA 59.817 50.000 0.00 0.00 34.37 3.53
2326 2521 1.032014 GCAGGTGTTGAGCTTTGGAA 58.968 50.000 0.00 0.00 0.00 3.53
2327 2522 1.408702 GCAGGTGTTGAGCTTTGGAAA 59.591 47.619 0.00 0.00 0.00 3.13
2328 2523 2.544486 GCAGGTGTTGAGCTTTGGAAAG 60.544 50.000 0.00 0.00 39.03 2.62
2329 2524 2.951642 CAGGTGTTGAGCTTTGGAAAGA 59.048 45.455 3.23 0.00 38.28 2.52
2330 2525 3.381272 CAGGTGTTGAGCTTTGGAAAGAA 59.619 43.478 3.23 0.00 38.28 2.52
2331 2526 4.023291 AGGTGTTGAGCTTTGGAAAGAAA 58.977 39.130 3.23 0.00 38.28 2.52
2332 2527 4.651045 AGGTGTTGAGCTTTGGAAAGAAAT 59.349 37.500 3.23 0.00 38.28 2.17
2333 2528 5.129320 AGGTGTTGAGCTTTGGAAAGAAATT 59.871 36.000 3.23 0.00 38.28 1.82
2334 2529 5.463392 GGTGTTGAGCTTTGGAAAGAAATTC 59.537 40.000 3.23 0.00 38.28 2.17
2335 2530 6.042143 GTGTTGAGCTTTGGAAAGAAATTCA 58.958 36.000 3.23 0.00 39.98 2.57
2336 2531 6.534793 GTGTTGAGCTTTGGAAAGAAATTCAA 59.465 34.615 3.23 4.63 39.98 2.69
2337 2532 7.064490 GTGTTGAGCTTTGGAAAGAAATTCAAA 59.936 33.333 3.23 0.00 39.98 2.69
2338 2533 7.605691 TGTTGAGCTTTGGAAAGAAATTCAAAA 59.394 29.630 3.23 0.82 38.38 2.44
2339 2534 7.538303 TGAGCTTTGGAAAGAAATTCAAAAC 57.462 32.000 3.23 0.00 36.28 2.43
2340 2535 7.102346 TGAGCTTTGGAAAGAAATTCAAAACA 58.898 30.769 3.23 0.00 36.28 2.83
2341 2536 7.769970 TGAGCTTTGGAAAGAAATTCAAAACAT 59.230 29.630 3.23 0.00 36.28 2.71
2342 2537 8.510243 AGCTTTGGAAAGAAATTCAAAACATT 57.490 26.923 3.23 0.00 36.28 2.71
2343 2538 8.959548 AGCTTTGGAAAGAAATTCAAAACATTT 58.040 25.926 3.23 0.00 36.28 2.32
2344 2539 9.571810 GCTTTGGAAAGAAATTCAAAACATTTT 57.428 25.926 3.23 0.00 36.28 1.82
2348 2543 9.664332 TGGAAAGAAATTCAAAACATTTTCTGA 57.336 25.926 0.00 0.00 38.18 3.27
2358 2553 9.903682 TTCAAAACATTTTCTGAAAATTGCAAA 57.096 22.222 22.21 11.34 38.97 3.68
2359 2554 9.339492 TCAAAACATTTTCTGAAAATTGCAAAC 57.661 25.926 22.21 0.00 38.97 2.93
2360 2555 9.125906 CAAAACATTTTCTGAAAATTGCAAACA 57.874 25.926 22.21 1.06 38.97 2.83
2361 2556 8.898983 AAACATTTTCTGAAAATTGCAAACAG 57.101 26.923 22.21 11.07 38.97 3.16
2362 2557 7.614124 ACATTTTCTGAAAATTGCAAACAGT 57.386 28.000 22.21 13.26 38.97 3.55
2363 2558 8.042944 ACATTTTCTGAAAATTGCAAACAGTT 57.957 26.923 22.21 0.00 38.97 3.16
2364 2559 8.513774 ACATTTTCTGAAAATTGCAAACAGTTT 58.486 25.926 22.21 1.73 38.97 2.66
2365 2560 9.344309 CATTTTCTGAAAATTGCAAACAGTTTT 57.656 25.926 22.21 5.65 45.23 2.43
2366 2561 9.911138 ATTTTCTGAAAATTGCAAACAGTTTTT 57.089 22.222 19.79 5.24 43.36 1.94
2367 2562 8.725212 TTTCTGAAAATTGCAAACAGTTTTTG 57.275 26.923 11.38 7.59 43.36 2.44
2368 2563 7.664082 TCTGAAAATTGCAAACAGTTTTTGA 57.336 28.000 11.38 9.27 43.36 2.69
2369 2564 8.092521 TCTGAAAATTGCAAACAGTTTTTGAA 57.907 26.923 11.38 0.00 43.36 2.69
2370 2565 8.562892 TCTGAAAATTGCAAACAGTTTTTGAAA 58.437 25.926 11.38 1.76 43.36 2.69
2371 2566 9.344309 CTGAAAATTGCAAACAGTTTTTGAAAT 57.656 25.926 11.38 4.17 43.36 2.17
2372 2567 9.125906 TGAAAATTGCAAACAGTTTTTGAAATG 57.874 25.926 11.38 0.00 43.36 2.32
2373 2568 7.509050 AAATTGCAAACAGTTTTTGAAATGC 57.491 28.000 8.44 0.00 37.63 3.56
2374 2569 5.618056 TTGCAAACAGTTTTTGAAATGCA 57.382 30.435 5.94 0.00 39.47 3.96
2375 2570 5.219226 TGCAAACAGTTTTTGAAATGCAG 57.781 34.783 5.94 0.00 37.82 4.41
2376 2571 4.694509 TGCAAACAGTTTTTGAAATGCAGT 59.305 33.333 5.94 0.00 37.82 4.40
2377 2572 5.871524 TGCAAACAGTTTTTGAAATGCAGTA 59.128 32.000 5.94 0.00 37.82 2.74
2378 2573 6.035866 TGCAAACAGTTTTTGAAATGCAGTAG 59.964 34.615 5.94 0.00 37.82 2.57
2379 2574 6.035975 GCAAACAGTTTTTGAAATGCAGTAGT 59.964 34.615 5.94 0.00 35.13 2.73
2380 2575 7.412891 GCAAACAGTTTTTGAAATGCAGTAGTT 60.413 33.333 5.94 0.00 35.13 2.24
2381 2576 7.524294 AACAGTTTTTGAAATGCAGTAGTTG 57.476 32.000 0.00 0.00 0.00 3.16
2382 2577 6.630071 ACAGTTTTTGAAATGCAGTAGTTGT 58.370 32.000 0.00 0.00 0.00 3.32
2383 2578 7.096551 ACAGTTTTTGAAATGCAGTAGTTGTT 58.903 30.769 0.00 0.00 0.00 2.83
2384 2579 7.602265 ACAGTTTTTGAAATGCAGTAGTTGTTT 59.398 29.630 0.00 0.00 0.00 2.83
2385 2580 8.442384 CAGTTTTTGAAATGCAGTAGTTGTTTT 58.558 29.630 0.00 0.00 0.00 2.43
2386 2581 8.442384 AGTTTTTGAAATGCAGTAGTTGTTTTG 58.558 29.630 0.00 0.00 0.00 2.44
2387 2582 8.439286 GTTTTTGAAATGCAGTAGTTGTTTTGA 58.561 29.630 0.00 0.00 0.00 2.69
2388 2583 8.715191 TTTTGAAATGCAGTAGTTGTTTTGAT 57.285 26.923 0.00 0.00 0.00 2.57
2389 2584 9.809096 TTTTGAAATGCAGTAGTTGTTTTGATA 57.191 25.926 0.00 0.00 0.00 2.15
2390 2585 9.979578 TTTGAAATGCAGTAGTTGTTTTGATAT 57.020 25.926 0.00 0.00 0.00 1.63
2391 2586 9.979578 TTGAAATGCAGTAGTTGTTTTGATATT 57.020 25.926 0.00 0.00 0.00 1.28
2392 2587 9.624697 TGAAATGCAGTAGTTGTTTTGATATTC 57.375 29.630 0.00 0.00 0.00 1.75
2393 2588 8.986477 AAATGCAGTAGTTGTTTTGATATTCC 57.014 30.769 0.00 0.00 0.00 3.01
2394 2589 7.701539 ATGCAGTAGTTGTTTTGATATTCCA 57.298 32.000 0.00 0.00 0.00 3.53
2395 2590 7.517614 TGCAGTAGTTGTTTTGATATTCCAA 57.482 32.000 0.00 0.00 0.00 3.53
2396 2591 7.946207 TGCAGTAGTTGTTTTGATATTCCAAA 58.054 30.769 0.00 0.00 34.56 3.28
2397 2592 7.865385 TGCAGTAGTTGTTTTGATATTCCAAAC 59.135 33.333 0.00 0.00 35.95 2.93
2398 2593 8.082242 GCAGTAGTTGTTTTGATATTCCAAACT 58.918 33.333 5.98 0.00 35.95 2.66
2399 2594 9.612620 CAGTAGTTGTTTTGATATTCCAAACTC 57.387 33.333 5.98 0.00 35.95 3.01
2400 2595 9.574516 AGTAGTTGTTTTGATATTCCAAACTCT 57.425 29.630 5.98 6.69 35.95 3.24
2415 2610 7.883229 TCCAAACTCTTTTTGAAAAGTGAAC 57.117 32.000 19.35 0.00 44.37 3.18
2416 2611 6.871492 TCCAAACTCTTTTTGAAAAGTGAACC 59.129 34.615 19.35 0.00 44.37 3.62
2417 2612 6.183360 CCAAACTCTTTTTGAAAAGTGAACCG 60.183 38.462 19.35 8.72 44.37 4.44
2418 2613 5.638596 ACTCTTTTTGAAAAGTGAACCGT 57.361 34.783 19.35 6.70 44.37 4.83
2419 2614 6.020971 ACTCTTTTTGAAAAGTGAACCGTT 57.979 33.333 19.35 0.00 44.37 4.44
2420 2615 6.452242 ACTCTTTTTGAAAAGTGAACCGTTT 58.548 32.000 19.35 0.00 44.37 3.60
2421 2616 6.364976 ACTCTTTTTGAAAAGTGAACCGTTTG 59.635 34.615 19.35 3.53 44.37 2.93
2422 2617 6.217294 TCTTTTTGAAAAGTGAACCGTTTGT 58.783 32.000 14.03 0.00 44.37 2.83
2423 2618 7.368833 TCTTTTTGAAAAGTGAACCGTTTGTA 58.631 30.769 14.03 0.00 44.37 2.41
2424 2619 7.866393 TCTTTTTGAAAAGTGAACCGTTTGTAA 59.134 29.630 14.03 0.00 44.37 2.41
2425 2620 8.535690 TTTTTGAAAAGTGAACCGTTTGTAAT 57.464 26.923 0.00 0.00 0.00 1.89
2426 2621 8.535690 TTTTGAAAAGTGAACCGTTTGTAATT 57.464 26.923 0.00 0.00 0.00 1.40
2427 2622 9.635520 TTTTGAAAAGTGAACCGTTTGTAATTA 57.364 25.926 0.00 0.00 0.00 1.40
2428 2623 8.617761 TTGAAAAGTGAACCGTTTGTAATTAC 57.382 30.769 8.75 8.75 0.00 1.89
2429 2624 7.759465 TGAAAAGTGAACCGTTTGTAATTACA 58.241 30.769 14.35 14.35 0.00 2.41
2430 2625 8.242053 TGAAAAGTGAACCGTTTGTAATTACAA 58.758 29.630 23.91 23.91 43.80 2.41
2431 2626 9.240159 GAAAAGTGAACCGTTTGTAATTACAAT 57.760 29.630 27.14 14.85 44.72 2.71
2432 2627 9.589111 AAAAGTGAACCGTTTGTAATTACAATT 57.411 25.926 27.14 19.46 44.72 2.32
2433 2628 9.589111 AAAGTGAACCGTTTGTAATTACAATTT 57.411 25.926 27.14 18.64 44.72 1.82
2491 2686 9.723601 TTTTGAAATTCCCCAATATTTTCTGAG 57.276 29.630 0.00 0.00 0.00 3.35
2492 2687 8.663209 TTGAAATTCCCCAATATTTTCTGAGA 57.337 30.769 0.00 0.00 0.00 3.27
2493 2688 8.843308 TGAAATTCCCCAATATTTTCTGAGAT 57.157 30.769 0.00 0.00 0.00 2.75
2494 2689 8.917088 TGAAATTCCCCAATATTTTCTGAGATC 58.083 33.333 0.00 0.00 0.00 2.75
2495 2690 8.843308 AAATTCCCCAATATTTTCTGAGATCA 57.157 30.769 0.00 0.00 0.00 2.92
2496 2691 9.443365 AAATTCCCCAATATTTTCTGAGATCAT 57.557 29.630 0.00 0.00 0.00 2.45
2497 2692 7.828508 TTCCCCAATATTTTCTGAGATCATG 57.171 36.000 0.00 0.00 0.00 3.07
2498 2693 7.152942 TCCCCAATATTTTCTGAGATCATGA 57.847 36.000 0.00 0.00 0.00 3.07
2499 2694 7.585440 TCCCCAATATTTTCTGAGATCATGAA 58.415 34.615 0.00 0.00 0.00 2.57
2500 2695 7.503566 TCCCCAATATTTTCTGAGATCATGAAC 59.496 37.037 0.00 0.00 0.00 3.18
2501 2696 7.286087 CCCCAATATTTTCTGAGATCATGAACA 59.714 37.037 0.00 0.00 0.00 3.18
2502 2697 8.857098 CCCAATATTTTCTGAGATCATGAACAT 58.143 33.333 0.00 0.00 0.00 2.71
2509 2704 9.687210 TTTTCTGAGATCATGAACATTCTTTTG 57.313 29.630 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.067913 TGAGCTCGTGCGCCATGA 62.068 61.111 9.64 3.13 45.42 3.07
45 46 4.457496 ATGGCACGGGTGAGCTCG 62.457 66.667 9.64 0.00 45.67 5.03
48 49 4.408821 TGGATGGCACGGGTGAGC 62.409 66.667 2.38 0.00 0.00 4.26
91 92 4.577677 TGAAAGGGCGTGCCAGCA 62.578 61.111 13.76 1.84 39.27 4.41
105 106 3.328382 GTGTATACACAGGGTGCTGAA 57.672 47.619 27.37 0.00 45.75 3.02
120 121 6.925610 ACGATGCTAATCACATTTGTGTAT 57.074 33.333 10.30 3.96 45.76 2.29
140 141 0.602638 GTCTGGGTGTGCATCAACGA 60.603 55.000 0.00 0.00 33.96 3.85
144 145 0.250858 CTTGGTCTGGGTGTGCATCA 60.251 55.000 0.00 0.00 0.00 3.07
152 153 3.763057 GGTGATAAAACTTGGTCTGGGT 58.237 45.455 0.00 0.00 0.00 4.51
157 158 3.816523 TGAACCGGTGATAAAACTTGGTC 59.183 43.478 8.52 0.00 31.33 4.02
168 169 2.297701 GGCATACATTGAACCGGTGAT 58.702 47.619 8.52 0.00 0.00 3.06
320 321 6.351371 CCACAACACTATGATCTGGACTAACT 60.351 42.308 0.00 0.00 0.00 2.24
328 329 4.568956 TCACACCACAACACTATGATCTG 58.431 43.478 0.00 0.00 0.00 2.90
369 371 6.471233 TGTTTTGTACAATCAAATCCCACA 57.529 33.333 9.56 0.00 37.20 4.17
407 409 9.605275 TGGATCTTAGTTTCAATTCTCATAGTG 57.395 33.333 0.00 0.00 0.00 2.74
484 496 1.568612 CTTGAACGCGTCCATGCACT 61.569 55.000 14.44 0.00 34.15 4.40
544 557 5.354767 CATGGAGAATCTTCGATCTGTTCA 58.645 41.667 0.00 0.00 33.73 3.18
547 560 3.387374 AGCATGGAGAATCTTCGATCTGT 59.613 43.478 0.00 0.00 33.73 3.41
631 645 0.587737 TTTTGTGTCTTTCGTGCGCG 60.588 50.000 14.79 14.79 39.92 6.86
632 646 1.540407 TTTTTGTGTCTTTCGTGCGC 58.460 45.000 0.00 0.00 0.00 6.09
750 764 9.946165 GAACATTAATTTCTCCCCTTTTATACG 57.054 33.333 0.00 0.00 0.00 3.06
899 917 8.115490 TCAACTCATGACTCGATCATACATAT 57.885 34.615 9.16 0.00 46.96 1.78
926 946 6.092122 TGTCAATGAGAAATACTTTGCTACCG 59.908 38.462 0.00 0.00 0.00 4.02
936 956 7.202016 TCACTTGGTTGTCAATGAGAAATAC 57.798 36.000 0.00 0.00 34.45 1.89
947 967 2.618241 GCACTCAATCACTTGGTTGTCA 59.382 45.455 2.22 0.00 32.95 3.58
981 1003 2.537633 TACCCCCACTCGATACAACT 57.462 50.000 0.00 0.00 0.00 3.16
1070 1093 3.428045 GGATGCCTTACATTGAGCAACAC 60.428 47.826 0.00 0.00 39.84 3.32
1090 1113 7.443272 CAGATACAGAAATATTGATGTGCTGGA 59.557 37.037 18.36 0.00 31.43 3.86
1099 1122 7.420002 GCATTGTGCAGATACAGAAATATTGA 58.580 34.615 0.00 0.00 44.26 2.57
1125 1148 7.730364 ACATTAACCAGTGAACAAAGACTAG 57.270 36.000 0.00 0.00 0.00 2.57
1128 1151 7.492352 AGTACATTAACCAGTGAACAAAGAC 57.508 36.000 0.00 0.00 0.00 3.01
1154 1177 8.841754 AAGAGAAAGGCCTTACTAACTATACT 57.158 34.615 20.84 0.00 0.00 2.12
1161 1184 5.631119 AGCAAAAGAGAAAGGCCTTACTAA 58.369 37.500 20.84 0.00 0.00 2.24
1166 1189 3.570540 AGAAGCAAAAGAGAAAGGCCTT 58.429 40.909 13.78 13.78 0.00 4.35
1167 1190 3.235750 AGAAGCAAAAGAGAAAGGCCT 57.764 42.857 0.00 0.00 0.00 5.19
1168 1191 3.068732 ACAAGAAGCAAAAGAGAAAGGCC 59.931 43.478 0.00 0.00 0.00 5.19
1169 1192 4.037327 AGACAAGAAGCAAAAGAGAAAGGC 59.963 41.667 0.00 0.00 0.00 4.35
1170 1193 5.764487 AGACAAGAAGCAAAAGAGAAAGG 57.236 39.130 0.00 0.00 0.00 3.11
1171 1194 8.782144 AGATTAGACAAGAAGCAAAAGAGAAAG 58.218 33.333 0.00 0.00 0.00 2.62
1172 1195 8.682936 AGATTAGACAAGAAGCAAAAGAGAAA 57.317 30.769 0.00 0.00 0.00 2.52
1173 1196 9.209175 GTAGATTAGACAAGAAGCAAAAGAGAA 57.791 33.333 0.00 0.00 0.00 2.87
1174 1197 8.589338 AGTAGATTAGACAAGAAGCAAAAGAGA 58.411 33.333 0.00 0.00 0.00 3.10
1175 1198 8.655092 CAGTAGATTAGACAAGAAGCAAAAGAG 58.345 37.037 0.00 0.00 0.00 2.85
1176 1199 7.118390 GCAGTAGATTAGACAAGAAGCAAAAGA 59.882 37.037 0.00 0.00 0.00 2.52
1177 1200 7.239972 GCAGTAGATTAGACAAGAAGCAAAAG 58.760 38.462 0.00 0.00 0.00 2.27
1178 1201 6.128553 CGCAGTAGATTAGACAAGAAGCAAAA 60.129 38.462 0.00 0.00 0.00 2.44
1179 1202 5.348724 CGCAGTAGATTAGACAAGAAGCAAA 59.651 40.000 0.00 0.00 0.00 3.68
1180 1203 4.864806 CGCAGTAGATTAGACAAGAAGCAA 59.135 41.667 0.00 0.00 0.00 3.91
1181 1204 4.082190 ACGCAGTAGATTAGACAAGAAGCA 60.082 41.667 0.00 0.00 41.94 3.91
1182 1205 4.425520 ACGCAGTAGATTAGACAAGAAGC 58.574 43.478 0.00 0.00 41.94 3.86
1224 1247 8.938906 GGACAATCATTGTTATGCAATTCTTTT 58.061 29.630 4.04 0.00 44.82 2.27
1225 1248 7.276218 CGGACAATCATTGTTATGCAATTCTTT 59.724 33.333 4.04 0.00 44.82 2.52
1226 1249 6.753279 CGGACAATCATTGTTATGCAATTCTT 59.247 34.615 4.04 0.00 44.82 2.52
1227 1250 6.127647 ACGGACAATCATTGTTATGCAATTCT 60.128 34.615 4.04 0.00 44.82 2.40
1228 1251 6.035843 ACGGACAATCATTGTTATGCAATTC 58.964 36.000 4.04 0.00 44.82 2.17
1229 1252 5.964758 ACGGACAATCATTGTTATGCAATT 58.035 33.333 4.04 0.00 44.82 2.32
1231 1254 5.384063 AACGGACAATCATTGTTATGCAA 57.616 34.783 4.04 0.00 45.52 4.08
1232 1255 5.182950 AGAAACGGACAATCATTGTTATGCA 59.817 36.000 4.04 0.00 45.52 3.96
1233 1256 5.640732 AGAAACGGACAATCATTGTTATGC 58.359 37.500 4.04 0.00 45.52 3.14
1234 1257 9.787532 AATAAGAAACGGACAATCATTGTTATG 57.212 29.630 4.04 0.46 45.52 1.90
1239 1262 9.450807 GGAATAATAAGAAACGGACAATCATTG 57.549 33.333 0.00 0.00 0.00 2.82
1240 1263 9.184523 TGGAATAATAAGAAACGGACAATCATT 57.815 29.630 0.00 0.00 0.00 2.57
1248 1271 9.268268 GTGTATCATGGAATAATAAGAAACGGA 57.732 33.333 0.00 0.00 0.00 4.69
1272 1399 1.739466 CCATTCATGGTTCGACCTGTG 59.261 52.381 0.00 5.19 43.05 3.66
1396 1526 3.330126 TTCCATAGTGGGGTAGAGGAG 57.670 52.381 0.00 0.00 38.32 3.69
1416 1546 0.608130 TACACGCTCTCATGCACCTT 59.392 50.000 0.00 0.00 0.00 3.50
1501 1647 4.162509 AGCTAGGCTCGAAAATTAAGGAGT 59.837 41.667 0.00 0.00 30.62 3.85
1515 1661 2.875317 GCCAATTTGACTAGCTAGGCTC 59.125 50.000 26.79 15.24 40.44 4.70
1606 1780 3.701532 TTTGCCAAACCAAACTACTCG 57.298 42.857 0.00 0.00 30.28 4.18
1675 1853 2.514510 TTTCCGGAGCATGTGCGCTA 62.515 55.000 9.73 0.00 44.01 4.26
1701 1879 3.522343 AGATCCCAAGGTAAGTTGTACCC 59.478 47.826 0.00 0.00 38.33 3.69
1726 1906 8.850007 TGTATATGTGGCACAAAAGTTAACTA 57.150 30.769 25.95 9.31 44.16 2.24
1751 1944 7.390718 GGTGTGTTGACCTCTGTATTCTAAAAT 59.609 37.037 0.00 0.00 32.69 1.82
1801 1995 0.606604 TGCGGGAACTGAGTACTTCC 59.393 55.000 0.00 0.00 36.31 3.46
1814 2008 2.750637 GAGAGGAGACGTGCGGGA 60.751 66.667 0.00 0.00 0.00 5.14
1848 2042 9.122613 GAACTTTTGTTTTCTATGCAAGAGATC 57.877 33.333 2.76 0.00 43.66 2.75
1849 2043 8.632679 TGAACTTTTGTTTTCTATGCAAGAGAT 58.367 29.630 2.76 0.00 43.66 2.75
1852 2046 7.591057 CGATGAACTTTTGTTTTCTATGCAAGA 59.409 33.333 0.00 0.00 43.66 3.02
1854 2048 7.421599 TCGATGAACTTTTGTTTTCTATGCAA 58.578 30.769 0.00 0.00 43.66 4.08
1856 2050 7.965107 AGATCGATGAACTTTTGTTTTCTATGC 59.035 33.333 0.54 0.00 43.66 3.14
1859 2053 8.833231 AGAGATCGATGAACTTTTGTTTTCTA 57.167 30.769 0.54 0.00 43.66 2.10
1860 2054 7.659390 AGAGAGATCGATGAACTTTTGTTTTCT 59.341 33.333 0.54 0.00 43.66 2.52
1861 2055 7.743838 CAGAGAGATCGATGAACTTTTGTTTTC 59.256 37.037 0.54 0.00 43.66 2.29
1862 2056 7.227512 ACAGAGAGATCGATGAACTTTTGTTTT 59.772 33.333 0.54 0.00 43.66 2.43
1863 2057 6.708054 ACAGAGAGATCGATGAACTTTTGTTT 59.292 34.615 0.54 0.00 43.66 2.83
1864 2058 6.226787 ACAGAGAGATCGATGAACTTTTGTT 58.773 36.000 0.54 0.00 46.75 2.83
1865 2059 5.788450 ACAGAGAGATCGATGAACTTTTGT 58.212 37.500 0.54 5.70 0.00 2.83
1866 2060 5.290643 GGACAGAGAGATCGATGAACTTTTG 59.709 44.000 0.54 5.14 0.00 2.44
1942 2136 0.611714 GGCCGGGTAGAAGAACTCAA 59.388 55.000 2.18 0.00 0.00 3.02
1960 2154 0.758734 TAGATGCGAACCCTCCATGG 59.241 55.000 4.97 4.97 0.00 3.66
1998 2192 1.420430 TGGGGAAGACAAGAACTCGT 58.580 50.000 0.00 0.00 0.00 4.18
2001 2196 1.777272 AGCTTGGGGAAGACAAGAACT 59.223 47.619 9.16 0.00 46.27 3.01
2038 2233 2.715046 CCCCTCGTTTTACCCTAAACC 58.285 52.381 0.00 0.00 35.15 3.27
2039 2234 2.086869 GCCCCTCGTTTTACCCTAAAC 58.913 52.381 0.00 0.00 35.23 2.01
2040 2235 1.987368 AGCCCCTCGTTTTACCCTAAA 59.013 47.619 0.00 0.00 0.00 1.85
2041 2236 1.660242 AGCCCCTCGTTTTACCCTAA 58.340 50.000 0.00 0.00 0.00 2.69
2042 2237 1.556451 GAAGCCCCTCGTTTTACCCTA 59.444 52.381 0.00 0.00 0.00 3.53
2045 2240 1.810755 CAAGAAGCCCCTCGTTTTACC 59.189 52.381 0.00 0.00 0.00 2.85
2046 2241 2.225727 CACAAGAAGCCCCTCGTTTTAC 59.774 50.000 0.00 0.00 0.00 2.01
2066 2261 0.613853 CGACAGGTAGGAAGTCCCCA 60.614 60.000 0.00 0.00 36.42 4.96
2067 2262 1.957765 GCGACAGGTAGGAAGTCCCC 61.958 65.000 0.00 0.00 36.42 4.81
2068 2263 1.255667 TGCGACAGGTAGGAAGTCCC 61.256 60.000 0.00 0.00 36.42 4.46
2069 2264 0.824759 ATGCGACAGGTAGGAAGTCC 59.175 55.000 0.00 0.00 0.00 3.85
2070 2265 2.166664 AGAATGCGACAGGTAGGAAGTC 59.833 50.000 0.00 0.00 0.00 3.01
2071 2266 2.093973 CAGAATGCGACAGGTAGGAAGT 60.094 50.000 0.00 0.00 0.00 3.01
2072 2267 2.544685 CAGAATGCGACAGGTAGGAAG 58.455 52.381 0.00 0.00 0.00 3.46
2073 2268 2.672961 CAGAATGCGACAGGTAGGAA 57.327 50.000 0.00 0.00 0.00 3.36
2088 2283 2.048222 CGTCCTTCTGCCGCAGAA 60.048 61.111 29.39 29.39 46.50 3.02
2089 2284 4.069232 CCGTCCTTCTGCCGCAGA 62.069 66.667 19.36 19.36 38.87 4.26
2093 2288 3.546714 AAACCCCGTCCTTCTGCCG 62.547 63.158 0.00 0.00 0.00 5.69
2094 2289 1.674651 GAAACCCCGTCCTTCTGCC 60.675 63.158 0.00 0.00 0.00 4.85
2095 2290 2.033194 CGAAACCCCGTCCTTCTGC 61.033 63.158 0.00 0.00 0.00 4.26
2096 2291 2.033194 GCGAAACCCCGTCCTTCTG 61.033 63.158 0.00 0.00 0.00 3.02
2097 2292 2.346365 GCGAAACCCCGTCCTTCT 59.654 61.111 0.00 0.00 0.00 2.85
2098 2293 2.031465 TGCGAAACCCCGTCCTTC 59.969 61.111 0.00 0.00 0.00 3.46
2099 2294 2.281276 GTGCGAAACCCCGTCCTT 60.281 61.111 0.00 0.00 0.00 3.36
2100 2295 3.530910 CTGTGCGAAACCCCGTCCT 62.531 63.158 0.00 0.00 0.00 3.85
2101 2296 3.047877 CTGTGCGAAACCCCGTCC 61.048 66.667 0.00 0.00 0.00 4.79
2102 2297 3.047877 CCTGTGCGAAACCCCGTC 61.048 66.667 0.00 0.00 0.00 4.79
2134 2329 2.906897 CACATATGTGGGCCGGCC 60.907 66.667 38.57 38.57 42.10 6.13
2140 2335 0.106708 ACTAGCGGCACATATGTGGG 59.893 55.000 31.63 12.67 45.72 4.61
2141 2336 1.599071 CAACTAGCGGCACATATGTGG 59.401 52.381 31.63 19.62 45.72 4.17
2143 2338 1.299541 GCAACTAGCGGCACATATGT 58.700 50.000 1.41 1.41 0.00 2.29
2154 2349 3.951332 TGCACGACAGCAACTAGC 58.049 55.556 0.00 0.00 42.46 3.42
2160 2355 4.560136 TTCTTTTTATTGCACGACAGCA 57.440 36.364 0.00 0.00 43.99 4.41
2161 2356 4.737765 TGTTTCTTTTTATTGCACGACAGC 59.262 37.500 0.00 0.00 0.00 4.40
2162 2357 6.198687 TCTGTTTCTTTTTATTGCACGACAG 58.801 36.000 0.00 0.00 33.85 3.51
2163 2358 6.037720 TCTCTGTTTCTTTTTATTGCACGACA 59.962 34.615 0.00 0.00 0.00 4.35
2164 2359 6.427150 TCTCTGTTTCTTTTTATTGCACGAC 58.573 36.000 0.00 0.00 0.00 4.34
2165 2360 6.612247 TCTCTGTTTCTTTTTATTGCACGA 57.388 33.333 0.00 0.00 0.00 4.35
2166 2361 7.678194 TTTCTCTGTTTCTTTTTATTGCACG 57.322 32.000 0.00 0.00 0.00 5.34
2167 2362 9.301153 TCTTTTCTCTGTTTCTTTTTATTGCAC 57.699 29.630 0.00 0.00 0.00 4.57
2168 2363 9.868277 TTCTTTTCTCTGTTTCTTTTTATTGCA 57.132 25.926 0.00 0.00 0.00 4.08
2175 2370 9.455847 CGATTCATTCTTTTCTCTGTTTCTTTT 57.544 29.630 0.00 0.00 0.00 2.27
2176 2371 8.840321 TCGATTCATTCTTTTCTCTGTTTCTTT 58.160 29.630 0.00 0.00 0.00 2.52
2177 2372 8.383318 TCGATTCATTCTTTTCTCTGTTTCTT 57.617 30.769 0.00 0.00 0.00 2.52
2178 2373 7.969536 TCGATTCATTCTTTTCTCTGTTTCT 57.030 32.000 0.00 0.00 0.00 2.52
2179 2374 7.907563 GGATCGATTCATTCTTTTCTCTGTTTC 59.092 37.037 0.00 0.00 0.00 2.78
2180 2375 7.391554 TGGATCGATTCATTCTTTTCTCTGTTT 59.608 33.333 1.00 0.00 0.00 2.83
2181 2376 6.881065 TGGATCGATTCATTCTTTTCTCTGTT 59.119 34.615 1.00 0.00 0.00 3.16
2182 2377 6.314896 GTGGATCGATTCATTCTTTTCTCTGT 59.685 38.462 10.21 0.00 0.00 3.41
2183 2378 6.314648 TGTGGATCGATTCATTCTTTTCTCTG 59.685 38.462 10.21 0.00 0.00 3.35
2184 2379 6.409704 TGTGGATCGATTCATTCTTTTCTCT 58.590 36.000 10.21 0.00 0.00 3.10
2185 2380 6.536582 TCTGTGGATCGATTCATTCTTTTCTC 59.463 38.462 10.21 0.00 0.00 2.87
2186 2381 6.314896 GTCTGTGGATCGATTCATTCTTTTCT 59.685 38.462 10.21 0.00 0.00 2.52
2187 2382 6.457528 GGTCTGTGGATCGATTCATTCTTTTC 60.458 42.308 10.21 0.00 0.00 2.29
2188 2383 5.355350 GGTCTGTGGATCGATTCATTCTTTT 59.645 40.000 10.21 0.00 0.00 2.27
2189 2384 4.878397 GGTCTGTGGATCGATTCATTCTTT 59.122 41.667 10.21 0.00 0.00 2.52
2190 2385 4.163078 AGGTCTGTGGATCGATTCATTCTT 59.837 41.667 10.21 0.00 0.00 2.52
2191 2386 3.708631 AGGTCTGTGGATCGATTCATTCT 59.291 43.478 10.21 1.01 0.00 2.40
2192 2387 4.054671 GAGGTCTGTGGATCGATTCATTC 58.945 47.826 10.21 0.00 0.00 2.67
2193 2388 3.491619 CGAGGTCTGTGGATCGATTCATT 60.492 47.826 10.21 0.00 37.35 2.57
2194 2389 2.035193 CGAGGTCTGTGGATCGATTCAT 59.965 50.000 10.21 0.00 37.35 2.57
2195 2390 1.405463 CGAGGTCTGTGGATCGATTCA 59.595 52.381 1.00 1.00 37.35 2.57
2196 2391 1.866063 GCGAGGTCTGTGGATCGATTC 60.866 57.143 0.00 0.00 37.35 2.52
2197 2392 0.103208 GCGAGGTCTGTGGATCGATT 59.897 55.000 0.00 0.00 37.35 3.34
2198 2393 1.037579 TGCGAGGTCTGTGGATCGAT 61.038 55.000 0.00 0.00 37.35 3.59
2199 2394 1.677633 TGCGAGGTCTGTGGATCGA 60.678 57.895 0.00 0.00 37.35 3.59
2200 2395 1.517257 GTGCGAGGTCTGTGGATCG 60.517 63.158 0.00 0.00 38.19 3.69
2201 2396 0.176680 ATGTGCGAGGTCTGTGGATC 59.823 55.000 0.00 0.00 0.00 3.36
2202 2397 1.410517 CTATGTGCGAGGTCTGTGGAT 59.589 52.381 0.00 0.00 0.00 3.41
2203 2398 0.817654 CTATGTGCGAGGTCTGTGGA 59.182 55.000 0.00 0.00 0.00 4.02
2204 2399 0.817654 TCTATGTGCGAGGTCTGTGG 59.182 55.000 0.00 0.00 0.00 4.17
2205 2400 2.534298 CTTCTATGTGCGAGGTCTGTG 58.466 52.381 0.00 0.00 0.00 3.66
2206 2401 1.134965 GCTTCTATGTGCGAGGTCTGT 60.135 52.381 0.00 0.00 0.00 3.41
2207 2402 1.565305 GCTTCTATGTGCGAGGTCTG 58.435 55.000 0.00 0.00 0.00 3.51
2215 2410 2.202566 GGTTAGGACGCTTCTATGTGC 58.797 52.381 0.00 0.00 0.00 4.57
2216 2411 3.187700 GTGGTTAGGACGCTTCTATGTG 58.812 50.000 0.00 0.00 0.00 3.21
2217 2412 2.159282 CGTGGTTAGGACGCTTCTATGT 60.159 50.000 0.00 0.00 0.00 2.29
2218 2413 2.098607 TCGTGGTTAGGACGCTTCTATG 59.901 50.000 0.00 0.00 36.75 2.23
2219 2414 2.358267 CTCGTGGTTAGGACGCTTCTAT 59.642 50.000 0.00 0.00 36.75 1.98
2220 2415 1.741706 CTCGTGGTTAGGACGCTTCTA 59.258 52.381 0.00 0.00 36.75 2.10
2221 2416 0.526662 CTCGTGGTTAGGACGCTTCT 59.473 55.000 0.00 0.00 36.75 2.85
2222 2417 1.077089 GCTCGTGGTTAGGACGCTTC 61.077 60.000 0.00 0.00 36.75 3.86
2223 2418 1.080025 GCTCGTGGTTAGGACGCTT 60.080 57.895 0.00 0.00 36.75 4.68
2224 2419 2.572284 GCTCGTGGTTAGGACGCT 59.428 61.111 0.00 0.00 36.75 5.07
2225 2420 2.879462 CGCTCGTGGTTAGGACGC 60.879 66.667 0.00 0.00 36.75 5.19
2226 2421 2.202570 CCGCTCGTGGTTAGGACG 60.203 66.667 0.00 0.00 38.20 4.79
2227 2422 2.968206 ACCGCTCGTGGTTAGGAC 59.032 61.111 0.00 0.00 39.99 3.85
2233 2428 3.307906 TGGCTAACCGCTCGTGGT 61.308 61.111 0.00 0.00 46.67 4.16
2234 2429 2.813908 GTGGCTAACCGCTCGTGG 60.814 66.667 0.00 0.00 43.60 4.94
2241 2436 2.751259 TGTCTAGTGTAGTGGCTAACCG 59.249 50.000 0.00 0.00 39.70 4.44
2242 2437 4.401519 TGATGTCTAGTGTAGTGGCTAACC 59.598 45.833 0.00 0.00 0.00 2.85
2243 2438 5.578005 TGATGTCTAGTGTAGTGGCTAAC 57.422 43.478 0.00 0.00 0.00 2.34
2244 2439 4.098044 GCTGATGTCTAGTGTAGTGGCTAA 59.902 45.833 0.00 0.00 0.00 3.09
2245 2440 3.632604 GCTGATGTCTAGTGTAGTGGCTA 59.367 47.826 0.00 0.00 0.00 3.93
2246 2441 2.428890 GCTGATGTCTAGTGTAGTGGCT 59.571 50.000 0.00 0.00 0.00 4.75
2247 2442 2.428890 AGCTGATGTCTAGTGTAGTGGC 59.571 50.000 0.00 0.00 0.00 5.01
2248 2443 7.695480 ATATAGCTGATGTCTAGTGTAGTGG 57.305 40.000 0.00 0.00 0.00 4.00
2256 2451 9.868277 CCCTTTTCTAATATAGCTGATGTCTAG 57.132 37.037 0.00 0.00 0.00 2.43
2257 2452 8.314751 GCCCTTTTCTAATATAGCTGATGTCTA 58.685 37.037 0.00 0.00 0.00 2.59
2258 2453 7.164803 GCCCTTTTCTAATATAGCTGATGTCT 58.835 38.462 0.00 0.00 0.00 3.41
2259 2454 6.936900 TGCCCTTTTCTAATATAGCTGATGTC 59.063 38.462 0.00 0.00 0.00 3.06
2260 2455 6.712547 GTGCCCTTTTCTAATATAGCTGATGT 59.287 38.462 0.00 0.00 0.00 3.06
2261 2456 6.712095 TGTGCCCTTTTCTAATATAGCTGATG 59.288 38.462 0.00 0.00 0.00 3.07
2262 2457 6.712547 GTGTGCCCTTTTCTAATATAGCTGAT 59.287 38.462 0.00 0.00 0.00 2.90
2263 2458 6.055588 GTGTGCCCTTTTCTAATATAGCTGA 58.944 40.000 0.00 0.00 0.00 4.26
2264 2459 5.239525 GGTGTGCCCTTTTCTAATATAGCTG 59.760 44.000 0.00 0.00 0.00 4.24
2265 2460 5.104109 TGGTGTGCCCTTTTCTAATATAGCT 60.104 40.000 0.00 0.00 0.00 3.32
2266 2461 5.008712 GTGGTGTGCCCTTTTCTAATATAGC 59.991 44.000 0.00 0.00 0.00 2.97
2267 2462 6.038271 GTGTGGTGTGCCCTTTTCTAATATAG 59.962 42.308 0.00 0.00 0.00 1.31
2268 2463 5.883673 GTGTGGTGTGCCCTTTTCTAATATA 59.116 40.000 0.00 0.00 0.00 0.86
2269 2464 4.705023 GTGTGGTGTGCCCTTTTCTAATAT 59.295 41.667 0.00 0.00 0.00 1.28
2270 2465 4.076394 GTGTGGTGTGCCCTTTTCTAATA 58.924 43.478 0.00 0.00 0.00 0.98
2271 2466 2.890945 GTGTGGTGTGCCCTTTTCTAAT 59.109 45.455 0.00 0.00 0.00 1.73
2272 2467 2.092103 AGTGTGGTGTGCCCTTTTCTAA 60.092 45.455 0.00 0.00 0.00 2.10
2273 2468 1.493022 AGTGTGGTGTGCCCTTTTCTA 59.507 47.619 0.00 0.00 0.00 2.10
2274 2469 0.258774 AGTGTGGTGTGCCCTTTTCT 59.741 50.000 0.00 0.00 0.00 2.52
2275 2470 1.975660 TAGTGTGGTGTGCCCTTTTC 58.024 50.000 0.00 0.00 0.00 2.29
2276 2471 2.675658 ATAGTGTGGTGTGCCCTTTT 57.324 45.000 0.00 0.00 0.00 2.27
2277 2472 3.329520 TCTTATAGTGTGGTGTGCCCTTT 59.670 43.478 0.00 0.00 0.00 3.11
2278 2473 2.910319 TCTTATAGTGTGGTGTGCCCTT 59.090 45.455 0.00 0.00 0.00 3.95
2279 2474 2.546899 TCTTATAGTGTGGTGTGCCCT 58.453 47.619 0.00 0.00 0.00 5.19
2280 2475 3.055385 TCTTCTTATAGTGTGGTGTGCCC 60.055 47.826 0.00 0.00 0.00 5.36
2281 2476 3.933332 GTCTTCTTATAGTGTGGTGTGCC 59.067 47.826 0.00 0.00 0.00 5.01
2282 2477 4.389077 GTGTCTTCTTATAGTGTGGTGTGC 59.611 45.833 0.00 0.00 0.00 4.57
2283 2478 5.538118 TGTGTCTTCTTATAGTGTGGTGTG 58.462 41.667 0.00 0.00 0.00 3.82
2284 2479 5.784177 CTGTGTCTTCTTATAGTGTGGTGT 58.216 41.667 0.00 0.00 0.00 4.16
2285 2480 4.627467 GCTGTGTCTTCTTATAGTGTGGTG 59.373 45.833 0.00 0.00 0.00 4.17
2286 2481 4.283467 TGCTGTGTCTTCTTATAGTGTGGT 59.717 41.667 0.00 0.00 0.00 4.16
2287 2482 4.820897 TGCTGTGTCTTCTTATAGTGTGG 58.179 43.478 0.00 0.00 0.00 4.17
2288 2483 4.867047 CCTGCTGTGTCTTCTTATAGTGTG 59.133 45.833 0.00 0.00 0.00 3.82
2289 2484 4.528596 ACCTGCTGTGTCTTCTTATAGTGT 59.471 41.667 0.00 0.00 0.00 3.55
2290 2485 4.867047 CACCTGCTGTGTCTTCTTATAGTG 59.133 45.833 0.00 0.00 40.26 2.74
2291 2486 5.078411 CACCTGCTGTGTCTTCTTATAGT 57.922 43.478 0.00 0.00 40.26 2.12
2304 2499 1.027357 CAAAGCTCAACACCTGCTGT 58.973 50.000 0.00 0.00 37.11 4.40
2305 2500 0.313043 CCAAAGCTCAACACCTGCTG 59.687 55.000 0.00 0.00 37.11 4.41
2306 2501 0.183492 TCCAAAGCTCAACACCTGCT 59.817 50.000 0.00 0.00 38.87 4.24
2307 2502 1.032014 TTCCAAAGCTCAACACCTGC 58.968 50.000 0.00 0.00 0.00 4.85
2308 2503 2.951642 TCTTTCCAAAGCTCAACACCTG 59.048 45.455 0.00 0.00 35.99 4.00
2309 2504 3.297134 TCTTTCCAAAGCTCAACACCT 57.703 42.857 0.00 0.00 35.99 4.00
2310 2505 4.385358 TTTCTTTCCAAAGCTCAACACC 57.615 40.909 0.00 0.00 35.99 4.16
2311 2506 6.042143 TGAATTTCTTTCCAAAGCTCAACAC 58.958 36.000 0.00 0.00 35.99 3.32
2312 2507 6.219417 TGAATTTCTTTCCAAAGCTCAACA 57.781 33.333 0.00 0.00 35.99 3.33
2313 2508 7.538303 TTTGAATTTCTTTCCAAAGCTCAAC 57.462 32.000 0.00 0.00 35.99 3.18
2314 2509 7.605691 TGTTTTGAATTTCTTTCCAAAGCTCAA 59.394 29.630 0.00 0.00 31.65 3.02
2315 2510 7.102346 TGTTTTGAATTTCTTTCCAAAGCTCA 58.898 30.769 0.00 0.00 31.65 4.26
2316 2511 7.538303 TGTTTTGAATTTCTTTCCAAAGCTC 57.462 32.000 0.00 0.00 31.65 4.09
2317 2512 8.510243 AATGTTTTGAATTTCTTTCCAAAGCT 57.490 26.923 0.00 0.00 31.65 3.74
2318 2513 9.571810 AAAATGTTTTGAATTTCTTTCCAAAGC 57.428 25.926 0.00 0.00 31.65 3.51
2322 2517 9.664332 TCAGAAAATGTTTTGAATTTCTTTCCA 57.336 25.926 0.00 0.00 39.43 3.53
2332 2527 9.903682 TTTGCAATTTTCAGAAAATGTTTTGAA 57.096 22.222 19.78 8.66 40.05 2.69
2333 2528 9.339492 GTTTGCAATTTTCAGAAAATGTTTTGA 57.661 25.926 19.78 4.81 40.05 2.69
2334 2529 9.125906 TGTTTGCAATTTTCAGAAAATGTTTTG 57.874 25.926 19.78 15.71 40.05 2.44
2335 2530 9.344309 CTGTTTGCAATTTTCAGAAAATGTTTT 57.656 25.926 19.78 4.42 40.05 2.43
2336 2531 8.513774 ACTGTTTGCAATTTTCAGAAAATGTTT 58.486 25.926 19.78 4.75 40.05 2.83
2337 2532 8.042944 ACTGTTTGCAATTTTCAGAAAATGTT 57.957 26.923 19.78 5.42 40.05 2.71
2338 2533 7.614124 ACTGTTTGCAATTTTCAGAAAATGT 57.386 28.000 19.78 9.31 40.05 2.71
2339 2534 8.898983 AAACTGTTTGCAATTTTCAGAAAATG 57.101 26.923 19.78 14.73 40.05 2.32
2340 2535 9.911138 AAAAACTGTTTGCAATTTTCAGAAAAT 57.089 22.222 14.43 14.43 42.62 1.82
2341 2536 9.178427 CAAAAACTGTTTGCAATTTTCAGAAAA 57.822 25.926 20.19 10.80 33.59 2.29
2342 2537 8.562892 TCAAAAACTGTTTGCAATTTTCAGAAA 58.437 25.926 20.19 0.00 33.59 2.52
2343 2538 8.092521 TCAAAAACTGTTTGCAATTTTCAGAA 57.907 26.923 20.19 0.00 33.59 3.02
2344 2539 7.664082 TCAAAAACTGTTTGCAATTTTCAGA 57.336 28.000 20.19 13.49 33.59 3.27
2345 2540 8.725212 TTTCAAAAACTGTTTGCAATTTTCAG 57.275 26.923 6.53 9.57 33.59 3.02
2346 2541 9.125906 CATTTCAAAAACTGTTTGCAATTTTCA 57.874 25.926 6.53 0.00 33.59 2.69
2347 2542 8.103320 GCATTTCAAAAACTGTTTGCAATTTTC 58.897 29.630 6.53 0.00 33.59 2.29
2348 2543 7.597743 TGCATTTCAAAAACTGTTTGCAATTTT 59.402 25.926 6.53 0.88 35.84 1.82
2349 2544 7.088905 TGCATTTCAAAAACTGTTTGCAATTT 58.911 26.923 6.53 0.00 34.59 1.82
2350 2545 6.618811 TGCATTTCAAAAACTGTTTGCAATT 58.381 28.000 6.53 0.00 34.59 2.32
2351 2546 6.127952 ACTGCATTTCAAAAACTGTTTGCAAT 60.128 30.769 6.53 0.00 35.99 3.56
2352 2547 5.180868 ACTGCATTTCAAAAACTGTTTGCAA 59.819 32.000 6.53 0.00 35.99 4.08
2353 2548 4.694509 ACTGCATTTCAAAAACTGTTTGCA 59.305 33.333 6.53 9.71 35.50 4.08
2354 2549 5.220557 ACTGCATTTCAAAAACTGTTTGC 57.779 34.783 6.53 5.42 0.00 3.68
2355 2550 7.524294 ACTACTGCATTTCAAAAACTGTTTG 57.476 32.000 6.53 0.00 0.00 2.93
2356 2551 7.602265 ACAACTACTGCATTTCAAAAACTGTTT 59.398 29.630 0.00 0.00 0.00 2.83
2357 2552 7.096551 ACAACTACTGCATTTCAAAAACTGTT 58.903 30.769 0.00 0.00 0.00 3.16
2358 2553 6.630071 ACAACTACTGCATTTCAAAAACTGT 58.370 32.000 0.00 0.00 0.00 3.55
2359 2554 7.524294 AACAACTACTGCATTTCAAAAACTG 57.476 32.000 0.00 0.00 0.00 3.16
2360 2555 8.442384 CAAAACAACTACTGCATTTCAAAAACT 58.558 29.630 0.00 0.00 0.00 2.66
2361 2556 8.439286 TCAAAACAACTACTGCATTTCAAAAAC 58.561 29.630 0.00 0.00 0.00 2.43
2362 2557 8.539770 TCAAAACAACTACTGCATTTCAAAAA 57.460 26.923 0.00 0.00 0.00 1.94
2363 2558 8.715191 ATCAAAACAACTACTGCATTTCAAAA 57.285 26.923 0.00 0.00 0.00 2.44
2364 2559 9.979578 ATATCAAAACAACTACTGCATTTCAAA 57.020 25.926 0.00 0.00 0.00 2.69
2365 2560 9.979578 AATATCAAAACAACTACTGCATTTCAA 57.020 25.926 0.00 0.00 0.00 2.69
2366 2561 9.624697 GAATATCAAAACAACTACTGCATTTCA 57.375 29.630 0.00 0.00 0.00 2.69
2367 2562 9.076596 GGAATATCAAAACAACTACTGCATTTC 57.923 33.333 0.00 0.00 0.00 2.17
2368 2563 8.584157 TGGAATATCAAAACAACTACTGCATTT 58.416 29.630 0.00 0.00 0.00 2.32
2369 2564 8.121305 TGGAATATCAAAACAACTACTGCATT 57.879 30.769 0.00 0.00 0.00 3.56
2370 2565 7.701539 TGGAATATCAAAACAACTACTGCAT 57.298 32.000 0.00 0.00 0.00 3.96
2371 2566 7.517614 TTGGAATATCAAAACAACTACTGCA 57.482 32.000 0.00 0.00 0.00 4.41
2372 2567 8.082242 AGTTTGGAATATCAAAACAACTACTGC 58.918 33.333 11.74 0.00 38.21 4.40
2373 2568 9.612620 GAGTTTGGAATATCAAAACAACTACTG 57.387 33.333 11.74 0.00 38.21 2.74
2374 2569 9.574516 AGAGTTTGGAATATCAAAACAACTACT 57.425 29.630 11.74 0.00 38.21 2.57
2389 2584 8.935844 GTTCACTTTTCAAAAAGAGTTTGGAAT 58.064 29.630 19.29 0.00 46.39 3.01
2390 2585 7.386573 GGTTCACTTTTCAAAAAGAGTTTGGAA 59.613 33.333 19.29 10.57 46.39 3.53
2391 2586 6.871492 GGTTCACTTTTCAAAAAGAGTTTGGA 59.129 34.615 19.29 2.26 46.39 3.53
2392 2587 6.183360 CGGTTCACTTTTCAAAAAGAGTTTGG 60.183 38.462 19.29 3.90 46.39 3.28
2393 2588 6.364976 ACGGTTCACTTTTCAAAAAGAGTTTG 59.635 34.615 19.29 9.00 46.39 2.93
2394 2589 6.452242 ACGGTTCACTTTTCAAAAAGAGTTT 58.548 32.000 19.29 0.00 46.39 2.66
2395 2590 6.020971 ACGGTTCACTTTTCAAAAAGAGTT 57.979 33.333 19.29 0.00 46.39 3.01
2396 2591 5.638596 ACGGTTCACTTTTCAAAAAGAGT 57.361 34.783 19.29 8.12 46.39 3.24
2397 2592 6.364976 ACAAACGGTTCACTTTTCAAAAAGAG 59.635 34.615 19.29 12.74 46.39 2.85
2398 2593 6.217294 ACAAACGGTTCACTTTTCAAAAAGA 58.783 32.000 19.29 3.40 46.39 2.52
2400 2595 7.941795 TTACAAACGGTTCACTTTTCAAAAA 57.058 28.000 0.00 0.00 0.00 1.94
2401 2596 8.535690 AATTACAAACGGTTCACTTTTCAAAA 57.464 26.923 0.00 0.00 0.00 2.44
2402 2597 9.074443 GTAATTACAAACGGTTCACTTTTCAAA 57.926 29.630 10.81 0.00 0.00 2.69
2403 2598 8.242053 TGTAATTACAAACGGTTCACTTTTCAA 58.758 29.630 15.92 0.00 32.40 2.69
2404 2599 7.759465 TGTAATTACAAACGGTTCACTTTTCA 58.241 30.769 15.92 0.00 32.40 2.69
2405 2600 8.617761 TTGTAATTACAAACGGTTCACTTTTC 57.382 30.769 25.15 0.00 42.66 2.29
2465 2660 9.723601 CTCAGAAAATATTGGGGAATTTCAAAA 57.276 29.630 0.00 0.00 33.53 2.44
2466 2661 9.099071 TCTCAGAAAATATTGGGGAATTTCAAA 57.901 29.630 0.00 0.00 33.53 2.69
2467 2662 8.663209 TCTCAGAAAATATTGGGGAATTTCAA 57.337 30.769 0.00 0.00 33.53 2.69
2468 2663 8.843308 ATCTCAGAAAATATTGGGGAATTTCA 57.157 30.769 0.00 0.00 33.53 2.69
2469 2664 8.917088 TGATCTCAGAAAATATTGGGGAATTTC 58.083 33.333 0.00 0.00 0.00 2.17
2470 2665 8.843308 TGATCTCAGAAAATATTGGGGAATTT 57.157 30.769 0.00 0.00 0.00 1.82
2471 2666 8.867097 CATGATCTCAGAAAATATTGGGGAATT 58.133 33.333 0.00 0.00 0.00 2.17
2472 2667 8.229605 TCATGATCTCAGAAAATATTGGGGAAT 58.770 33.333 0.00 0.00 0.00 3.01
2473 2668 7.585440 TCATGATCTCAGAAAATATTGGGGAA 58.415 34.615 0.00 0.00 0.00 3.97
2474 2669 7.152942 TCATGATCTCAGAAAATATTGGGGA 57.847 36.000 0.00 0.00 0.00 4.81
2475 2670 7.286087 TGTTCATGATCTCAGAAAATATTGGGG 59.714 37.037 0.00 0.00 0.00 4.96
2476 2671 8.229253 TGTTCATGATCTCAGAAAATATTGGG 57.771 34.615 0.00 0.00 0.00 4.12
2483 2678 9.687210 CAAAAGAATGTTCATGATCTCAGAAAA 57.313 29.630 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.