Multiple sequence alignment - TraesCS6A01G420500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G420500 chr6A 100.000 2549 0 0 1 2549 617223441 617220893 0.000000e+00 4708
1 TraesCS6A01G420500 chr6A 98.989 1978 18 2 573 2549 533982322 533980346 0.000000e+00 3541
2 TraesCS6A01G420500 chr6A 84.270 356 38 11 235 572 617319803 617319448 5.260000e-87 331
3 TraesCS6A01G420500 chr6A 80.453 353 44 8 129 479 617349752 617349423 1.960000e-61 246
4 TraesCS6A01G420500 chr6A 89.189 185 20 0 280 464 617554019 617553835 5.480000e-57 231
5 TraesCS6A01G420500 chr6A 75.649 308 36 21 258 530 617247637 617247334 1.600000e-22 117
6 TraesCS6A01G420500 chr4A 99.090 1978 17 1 573 2549 36562913 36564890 0.000000e+00 3552
7 TraesCS6A01G420500 chr1A 99.187 1968 14 2 572 2539 22791528 22793493 0.000000e+00 3544
8 TraesCS6A01G420500 chr1A 83.473 357 40 11 235 572 2646232 2646588 5.290000e-82 315
9 TraesCS6A01G420500 chr1A 88.649 185 21 0 280 464 2842245 2842429 2.550000e-55 226
10 TraesCS6A01G420500 chr6B 99.137 1970 14 3 571 2539 660437745 660435778 0.000000e+00 3541
11 TraesCS6A01G420500 chr6B 83.989 356 39 11 235 572 717418834 717419189 2.450000e-85 326
12 TraesCS6A01G420500 chr6B 88.793 232 26 0 233 464 717402563 717402794 4.150000e-73 285
13 TraesCS6A01G420500 chr7A 98.939 1979 19 2 562 2539 701581931 701583908 0.000000e+00 3537
14 TraesCS6A01G420500 chr4B 98.938 1978 17 3 573 2549 578529982 578528008 0.000000e+00 3533
15 TraesCS6A01G420500 chr1B 98.938 1977 20 1 573 2549 42162338 42160363 0.000000e+00 3533
16 TraesCS6A01G420500 chr5B 98.743 1989 22 1 564 2549 185022635 185024623 0.000000e+00 3531
17 TraesCS6A01G420500 chr3B 98.888 1978 18 3 564 2539 379294083 379296058 0.000000e+00 3528
18 TraesCS6A01G420500 chr6D 83.708 356 40 9 235 572 472500708 472501063 1.140000e-83 320


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G420500 chr6A 617220893 617223441 2548 True 4708 4708 100.000 1 2549 1 chr6A.!!$R2 2548
1 TraesCS6A01G420500 chr6A 533980346 533982322 1976 True 3541 3541 98.989 573 2549 1 chr6A.!!$R1 1976
2 TraesCS6A01G420500 chr4A 36562913 36564890 1977 False 3552 3552 99.090 573 2549 1 chr4A.!!$F1 1976
3 TraesCS6A01G420500 chr1A 22791528 22793493 1965 False 3544 3544 99.187 572 2539 1 chr1A.!!$F3 1967
4 TraesCS6A01G420500 chr6B 660435778 660437745 1967 True 3541 3541 99.137 571 2539 1 chr6B.!!$R1 1968
5 TraesCS6A01G420500 chr7A 701581931 701583908 1977 False 3537 3537 98.939 562 2539 1 chr7A.!!$F1 1977
6 TraesCS6A01G420500 chr4B 578528008 578529982 1974 True 3533 3533 98.938 573 2549 1 chr4B.!!$R1 1976
7 TraesCS6A01G420500 chr1B 42160363 42162338 1975 True 3533 3533 98.938 573 2549 1 chr1B.!!$R1 1976
8 TraesCS6A01G420500 chr5B 185022635 185024623 1988 False 3531 3531 98.743 564 2549 1 chr5B.!!$F1 1985
9 TraesCS6A01G420500 chr3B 379294083 379296058 1975 False 3528 3528 98.888 564 2539 1 chr3B.!!$F1 1975

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
483 484 0.178992 CACAGACCCACCCACACATT 60.179 55.0 0.0 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2312 2320 0.590984 CGCGTGTGCAAACATTCACA 60.591 50.0 8.0 0.0 42.97 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.947115 AGATGTTGAAAGTAAGCTTTATACCAC 58.053 33.333 3.20 0.00 44.25 4.16
27 28 7.443259 TGTTGAAAGTAAGCTTTATACCACC 57.557 36.000 3.20 0.00 44.25 4.61
28 29 7.228590 TGTTGAAAGTAAGCTTTATACCACCT 58.771 34.615 3.20 0.00 44.25 4.00
29 30 8.377034 TGTTGAAAGTAAGCTTTATACCACCTA 58.623 33.333 3.20 0.00 44.25 3.08
30 31 8.880750 GTTGAAAGTAAGCTTTATACCACCTAG 58.119 37.037 3.20 0.00 44.25 3.02
31 32 8.142485 TGAAAGTAAGCTTTATACCACCTAGT 57.858 34.615 3.20 0.00 44.25 2.57
32 33 9.258629 TGAAAGTAAGCTTTATACCACCTAGTA 57.741 33.333 3.20 0.00 44.25 1.82
35 36 9.430399 AAGTAAGCTTTATACCACCTAGTATCA 57.570 33.333 3.20 0.00 34.74 2.15
36 37 9.080097 AGTAAGCTTTATACCACCTAGTATCAG 57.920 37.037 3.20 0.00 34.74 2.90
37 38 6.347859 AGCTTTATACCACCTAGTATCAGC 57.652 41.667 0.00 0.00 38.39 4.26
38 39 5.246429 AGCTTTATACCACCTAGTATCAGCC 59.754 44.000 10.15 0.00 38.63 4.85
39 40 5.246429 GCTTTATACCACCTAGTATCAGCCT 59.754 44.000 0.00 0.00 35.25 4.58
40 41 6.436532 GCTTTATACCACCTAGTATCAGCCTA 59.563 42.308 0.00 0.00 35.25 3.93
41 42 7.039223 GCTTTATACCACCTAGTATCAGCCTAA 60.039 40.741 0.00 0.00 35.25 2.69
42 43 8.786710 TTTATACCACCTAGTATCAGCCTAAA 57.213 34.615 0.00 0.00 34.74 1.85
43 44 6.919775 ATACCACCTAGTATCAGCCTAAAG 57.080 41.667 0.00 0.00 0.00 1.85
44 45 4.621769 ACCACCTAGTATCAGCCTAAAGT 58.378 43.478 0.00 0.00 0.00 2.66
45 46 5.774179 ACCACCTAGTATCAGCCTAAAGTA 58.226 41.667 0.00 0.00 0.00 2.24
46 47 5.834204 ACCACCTAGTATCAGCCTAAAGTAG 59.166 44.000 0.00 0.00 0.00 2.57
47 48 5.834204 CCACCTAGTATCAGCCTAAAGTAGT 59.166 44.000 0.00 0.00 0.00 2.73
48 49 7.002879 CCACCTAGTATCAGCCTAAAGTAGTA 58.997 42.308 0.00 0.00 0.00 1.82
49 50 7.504911 CCACCTAGTATCAGCCTAAAGTAGTAA 59.495 40.741 0.00 0.00 0.00 2.24
50 51 8.910944 CACCTAGTATCAGCCTAAAGTAGTAAA 58.089 37.037 0.00 0.00 0.00 2.01
51 52 9.657728 ACCTAGTATCAGCCTAAAGTAGTAAAT 57.342 33.333 0.00 0.00 0.00 1.40
52 53 9.915629 CCTAGTATCAGCCTAAAGTAGTAAATG 57.084 37.037 0.00 0.00 0.00 2.32
53 54 9.413048 CTAGTATCAGCCTAAAGTAGTAAATGC 57.587 37.037 0.00 0.00 0.00 3.56
54 55 7.792032 AGTATCAGCCTAAAGTAGTAAATGCA 58.208 34.615 0.00 0.00 0.00 3.96
55 56 6.927294 ATCAGCCTAAAGTAGTAAATGCAC 57.073 37.500 0.00 0.00 0.00 4.57
56 57 5.800296 TCAGCCTAAAGTAGTAAATGCACA 58.200 37.500 0.00 0.00 0.00 4.57
57 58 6.234920 TCAGCCTAAAGTAGTAAATGCACAA 58.765 36.000 0.00 0.00 0.00 3.33
58 59 6.371548 TCAGCCTAAAGTAGTAAATGCACAAG 59.628 38.462 0.00 0.00 0.00 3.16
59 60 5.648092 AGCCTAAAGTAGTAAATGCACAAGG 59.352 40.000 0.00 0.00 0.00 3.61
60 61 5.414765 GCCTAAAGTAGTAAATGCACAAGGT 59.585 40.000 0.00 0.00 0.00 3.50
61 62 6.596497 GCCTAAAGTAGTAAATGCACAAGGTA 59.404 38.462 0.00 0.00 0.00 3.08
62 63 7.413767 GCCTAAAGTAGTAAATGCACAAGGTAC 60.414 40.741 0.00 0.00 0.00 3.34
82 83 8.883954 AGGTACTTAAAGTCAACTTAACTGAC 57.116 34.615 0.00 5.22 38.90 3.51
83 84 7.930325 AGGTACTTAAAGTCAACTTAACTGACC 59.070 37.037 8.64 2.74 39.27 4.02
84 85 7.712205 GGTACTTAAAGTCAACTTAACTGACCA 59.288 37.037 8.64 0.00 43.53 4.02
85 86 7.787725 ACTTAAAGTCAACTTAACTGACCAG 57.212 36.000 8.64 0.00 43.53 4.00
86 87 7.336396 ACTTAAAGTCAACTTAACTGACCAGT 58.664 34.615 8.64 0.00 43.53 4.00
87 88 8.480501 ACTTAAAGTCAACTTAACTGACCAGTA 58.519 33.333 2.78 0.00 43.53 2.74
88 89 8.652810 TTAAAGTCAACTTAACTGACCAGTAC 57.347 34.615 2.78 0.00 43.53 2.73
89 90 5.864418 AGTCAACTTAACTGACCAGTACA 57.136 39.130 2.78 0.00 43.53 2.90
90 91 6.420913 AGTCAACTTAACTGACCAGTACAT 57.579 37.500 2.78 0.00 43.53 2.29
91 92 6.827727 AGTCAACTTAACTGACCAGTACATT 58.172 36.000 2.78 0.00 43.53 2.71
92 93 7.959175 AGTCAACTTAACTGACCAGTACATTA 58.041 34.615 2.78 0.00 43.53 1.90
93 94 8.594550 AGTCAACTTAACTGACCAGTACATTAT 58.405 33.333 2.78 0.00 43.53 1.28
94 95 8.870879 GTCAACTTAACTGACCAGTACATTATC 58.129 37.037 2.78 0.00 41.58 1.75
95 96 8.590204 TCAACTTAACTGACCAGTACATTATCA 58.410 33.333 2.78 0.00 41.58 2.15
96 97 8.873830 CAACTTAACTGACCAGTACATTATCAG 58.126 37.037 2.78 12.33 41.58 2.90
100 101 6.466885 ACTGACCAGTACATTATCAGTACC 57.533 41.667 16.07 0.00 46.23 3.34
101 102 5.955959 ACTGACCAGTACATTATCAGTACCA 59.044 40.000 16.07 0.00 46.23 3.25
102 103 6.611642 ACTGACCAGTACATTATCAGTACCAT 59.388 38.462 16.07 0.00 46.23 3.55
103 104 7.050970 TGACCAGTACATTATCAGTACCATC 57.949 40.000 0.00 0.00 42.09 3.51
104 105 6.041637 TGACCAGTACATTATCAGTACCATCC 59.958 42.308 0.00 0.00 42.09 3.51
105 106 6.143915 ACCAGTACATTATCAGTACCATCCT 58.856 40.000 0.00 0.00 42.09 3.24
106 107 6.042093 ACCAGTACATTATCAGTACCATCCTG 59.958 42.308 0.00 0.00 42.09 3.86
107 108 6.042093 CCAGTACATTATCAGTACCATCCTGT 59.958 42.308 0.00 0.00 42.09 4.00
108 109 7.232737 CCAGTACATTATCAGTACCATCCTGTA 59.767 40.741 0.00 0.00 42.09 2.74
109 110 8.638873 CAGTACATTATCAGTACCATCCTGTAA 58.361 37.037 0.00 0.00 42.09 2.41
110 111 9.209048 AGTACATTATCAGTACCATCCTGTAAA 57.791 33.333 0.00 0.00 42.09 2.01
111 112 9.826574 GTACATTATCAGTACCATCCTGTAAAA 57.173 33.333 0.00 0.00 36.66 1.52
112 113 8.964476 ACATTATCAGTACCATCCTGTAAAAG 57.036 34.615 0.00 0.00 0.00 2.27
113 114 8.548877 ACATTATCAGTACCATCCTGTAAAAGT 58.451 33.333 0.00 0.00 0.00 2.66
114 115 8.830580 CATTATCAGTACCATCCTGTAAAAGTG 58.169 37.037 0.00 0.00 0.00 3.16
115 116 5.818678 TCAGTACCATCCTGTAAAAGTGT 57.181 39.130 0.00 0.00 0.00 3.55
116 117 6.921486 TCAGTACCATCCTGTAAAAGTGTA 57.079 37.500 0.00 0.00 0.00 2.90
117 118 7.305813 TCAGTACCATCCTGTAAAAGTGTAA 57.694 36.000 0.00 0.00 0.00 2.41
118 119 7.737869 TCAGTACCATCCTGTAAAAGTGTAAA 58.262 34.615 0.00 0.00 0.00 2.01
119 120 7.876068 TCAGTACCATCCTGTAAAAGTGTAAAG 59.124 37.037 0.00 0.00 0.00 1.85
120 121 7.876068 CAGTACCATCCTGTAAAAGTGTAAAGA 59.124 37.037 0.00 0.00 0.00 2.52
121 122 8.434392 AGTACCATCCTGTAAAAGTGTAAAGAA 58.566 33.333 0.00 0.00 0.00 2.52
122 123 7.745620 ACCATCCTGTAAAAGTGTAAAGAAG 57.254 36.000 0.00 0.00 0.00 2.85
123 124 6.715264 ACCATCCTGTAAAAGTGTAAAGAAGG 59.285 38.462 0.00 0.00 0.00 3.46
124 125 6.940298 CCATCCTGTAAAAGTGTAAAGAAGGA 59.060 38.462 0.00 0.00 35.85 3.36
125 126 7.611855 CCATCCTGTAAAAGTGTAAAGAAGGAT 59.388 37.037 0.00 0.00 41.56 3.24
126 127 7.979444 TCCTGTAAAAGTGTAAAGAAGGATG 57.021 36.000 0.00 0.00 0.00 3.51
127 128 6.940298 TCCTGTAAAAGTGTAAAGAAGGATGG 59.060 38.462 0.00 0.00 0.00 3.51
128 129 6.940298 CCTGTAAAAGTGTAAAGAAGGATGGA 59.060 38.462 0.00 0.00 0.00 3.41
129 130 7.119846 CCTGTAAAAGTGTAAAGAAGGATGGAG 59.880 40.741 0.00 0.00 0.00 3.86
130 131 7.514721 TGTAAAAGTGTAAAGAAGGATGGAGT 58.485 34.615 0.00 0.00 0.00 3.85
131 132 6.884280 AAAAGTGTAAAGAAGGATGGAGTG 57.116 37.500 0.00 0.00 0.00 3.51
132 133 5.825593 AAGTGTAAAGAAGGATGGAGTGA 57.174 39.130 0.00 0.00 0.00 3.41
133 134 6.380079 AAGTGTAAAGAAGGATGGAGTGAT 57.620 37.500 0.00 0.00 0.00 3.06
134 135 7.496346 AAGTGTAAAGAAGGATGGAGTGATA 57.504 36.000 0.00 0.00 0.00 2.15
135 136 6.879400 AGTGTAAAGAAGGATGGAGTGATAC 58.121 40.000 0.00 0.00 0.00 2.24
136 137 6.670027 AGTGTAAAGAAGGATGGAGTGATACT 59.330 38.462 0.00 0.00 0.00 2.12
137 138 7.181125 AGTGTAAAGAAGGATGGAGTGATACTT 59.819 37.037 0.00 0.00 0.00 2.24
138 139 7.492994 GTGTAAAGAAGGATGGAGTGATACTTC 59.507 40.741 0.00 0.00 41.87 3.01
139 140 5.622346 AAGAAGGATGGAGTGATACTTCC 57.378 43.478 0.00 0.00 42.34 3.46
140 141 3.970640 AGAAGGATGGAGTGATACTTCCC 59.029 47.826 0.00 0.00 42.34 3.97
141 142 2.695585 AGGATGGAGTGATACTTCCCC 58.304 52.381 0.00 0.00 32.86 4.81
142 143 2.022035 AGGATGGAGTGATACTTCCCCA 60.022 50.000 0.00 0.00 32.86 4.96
143 144 2.777692 GGATGGAGTGATACTTCCCCAA 59.222 50.000 0.00 0.00 0.00 4.12
144 145 3.433740 GGATGGAGTGATACTTCCCCAAC 60.434 52.174 0.00 0.00 0.00 3.77
145 146 2.626785 TGGAGTGATACTTCCCCAACA 58.373 47.619 0.00 0.00 0.00 3.33
146 147 2.304761 TGGAGTGATACTTCCCCAACAC 59.695 50.000 0.00 0.00 0.00 3.32
147 148 2.304761 GGAGTGATACTTCCCCAACACA 59.695 50.000 0.00 0.00 0.00 3.72
148 149 3.335579 GAGTGATACTTCCCCAACACAC 58.664 50.000 0.00 0.00 0.00 3.82
149 150 2.708861 AGTGATACTTCCCCAACACACA 59.291 45.455 0.00 0.00 0.00 3.72
150 151 3.074412 GTGATACTTCCCCAACACACAG 58.926 50.000 0.00 0.00 0.00 3.66
151 152 2.039746 TGATACTTCCCCAACACACAGG 59.960 50.000 0.00 0.00 0.00 4.00
152 153 1.809133 TACTTCCCCAACACACAGGA 58.191 50.000 0.00 0.00 0.00 3.86
153 154 0.182775 ACTTCCCCAACACACAGGAC 59.817 55.000 0.00 0.00 0.00 3.85
154 155 0.474184 CTTCCCCAACACACAGGACT 59.526 55.000 0.00 0.00 0.00 3.85
155 156 0.923358 TTCCCCAACACACAGGACTT 59.077 50.000 0.00 0.00 0.00 3.01
156 157 0.182537 TCCCCAACACACAGGACTTG 59.817 55.000 0.00 0.00 0.00 3.16
157 158 0.182537 CCCCAACACACAGGACTTGA 59.817 55.000 0.00 0.00 0.00 3.02
158 159 1.597742 CCCAACACACAGGACTTGAG 58.402 55.000 0.00 0.00 0.00 3.02
159 160 0.947244 CCAACACACAGGACTTGAGC 59.053 55.000 0.00 0.00 0.00 4.26
160 161 1.667236 CAACACACAGGACTTGAGCA 58.333 50.000 0.00 0.00 0.00 4.26
161 162 2.016318 CAACACACAGGACTTGAGCAA 58.984 47.619 0.00 0.00 0.00 3.91
162 163 1.668419 ACACACAGGACTTGAGCAAC 58.332 50.000 0.00 0.00 0.00 4.17
163 164 1.065491 ACACACAGGACTTGAGCAACA 60.065 47.619 0.00 0.00 0.00 3.33
164 165 1.331756 CACACAGGACTTGAGCAACAC 59.668 52.381 0.00 0.00 0.00 3.32
165 166 1.065491 ACACAGGACTTGAGCAACACA 60.065 47.619 0.00 0.00 0.00 3.72
166 167 2.016318 CACAGGACTTGAGCAACACAA 58.984 47.619 0.00 0.00 0.00 3.33
167 168 2.423185 CACAGGACTTGAGCAACACAAA 59.577 45.455 0.00 0.00 0.00 2.83
168 169 2.684881 ACAGGACTTGAGCAACACAAAG 59.315 45.455 0.00 0.00 0.00 2.77
169 170 2.684881 CAGGACTTGAGCAACACAAAGT 59.315 45.455 0.00 0.00 0.00 2.66
170 171 3.129287 CAGGACTTGAGCAACACAAAGTT 59.871 43.478 0.00 0.00 42.42 2.66
171 172 4.335315 CAGGACTTGAGCAACACAAAGTTA 59.665 41.667 0.00 0.00 38.74 2.24
172 173 4.576463 AGGACTTGAGCAACACAAAGTTAG 59.424 41.667 0.00 0.00 38.74 2.34
173 174 4.574828 GGACTTGAGCAACACAAAGTTAGA 59.425 41.667 0.00 0.00 38.74 2.10
174 175 5.239525 GGACTTGAGCAACACAAAGTTAGAT 59.760 40.000 0.00 0.00 38.74 1.98
175 176 6.426937 GGACTTGAGCAACACAAAGTTAGATA 59.573 38.462 0.00 0.00 38.74 1.98
176 177 7.041372 GGACTTGAGCAACACAAAGTTAGATAA 60.041 37.037 0.00 0.00 38.74 1.75
177 178 7.639945 ACTTGAGCAACACAAAGTTAGATAAC 58.360 34.615 0.00 0.00 38.74 1.89
178 179 7.282224 ACTTGAGCAACACAAAGTTAGATAACA 59.718 33.333 5.59 0.00 38.74 2.41
179 180 7.561021 TGAGCAACACAAAGTTAGATAACAA 57.439 32.000 5.59 0.00 38.74 2.83
180 181 7.639039 TGAGCAACACAAAGTTAGATAACAAG 58.361 34.615 5.59 0.00 38.74 3.16
181 182 7.282224 TGAGCAACACAAAGTTAGATAACAAGT 59.718 33.333 5.59 0.00 38.74 3.16
182 183 7.417612 AGCAACACAAAGTTAGATAACAAGTG 58.582 34.615 14.90 14.90 38.74 3.16
183 184 7.067008 AGCAACACAAAGTTAGATAACAAGTGT 59.933 33.333 15.74 15.74 43.08 3.55
184 185 7.700656 GCAACACAAAGTTAGATAACAAGTGTT 59.299 33.333 21.57 21.57 46.18 3.32
185 186 9.221775 CAACACAAAGTTAGATAACAAGTGTTC 57.778 33.333 22.99 0.00 45.06 3.18
186 187 8.500753 ACACAAAGTTAGATAACAAGTGTTCA 57.499 30.769 15.74 0.00 40.90 3.18
187 188 8.952278 ACACAAAGTTAGATAACAAGTGTTCAA 58.048 29.630 15.74 0.00 40.90 2.69
188 189 9.781834 CACAAAGTTAGATAACAAGTGTTCAAA 57.218 29.630 0.00 0.00 39.31 2.69
215 216 7.367285 TGTTTAAACATCAATACTGTTCCTGC 58.633 34.615 17.01 0.00 35.84 4.85
216 217 7.230510 TGTTTAAACATCAATACTGTTCCTGCT 59.769 33.333 17.01 0.00 35.84 4.24
217 218 8.726988 GTTTAAACATCAATACTGTTCCTGCTA 58.273 33.333 13.51 0.00 35.84 3.49
218 219 9.461312 TTTAAACATCAATACTGTTCCTGCTAT 57.539 29.630 0.00 0.00 35.84 2.97
221 222 8.668510 AACATCAATACTGTTCCTGCTATAAG 57.331 34.615 0.00 0.00 31.29 1.73
222 223 7.796054 ACATCAATACTGTTCCTGCTATAAGT 58.204 34.615 0.00 0.00 0.00 2.24
223 224 7.712639 ACATCAATACTGTTCCTGCTATAAGTG 59.287 37.037 0.00 0.00 0.00 3.16
224 225 7.182817 TCAATACTGTTCCTGCTATAAGTGT 57.817 36.000 0.00 0.00 0.00 3.55
225 226 7.620880 TCAATACTGTTCCTGCTATAAGTGTT 58.379 34.615 0.00 0.00 0.00 3.32
226 227 7.549134 TCAATACTGTTCCTGCTATAAGTGTTG 59.451 37.037 0.00 0.00 37.80 3.33
227 228 5.483685 ACTGTTCCTGCTATAAGTGTTGA 57.516 39.130 0.00 0.00 0.00 3.18
228 229 5.238583 ACTGTTCCTGCTATAAGTGTTGAC 58.761 41.667 0.00 0.00 0.00 3.18
229 230 4.242475 TGTTCCTGCTATAAGTGTTGACG 58.758 43.478 0.00 0.00 0.00 4.35
230 231 2.888594 TCCTGCTATAAGTGTTGACGC 58.111 47.619 0.00 0.00 0.00 5.19
231 232 2.496070 TCCTGCTATAAGTGTTGACGCT 59.504 45.455 0.00 0.00 38.54 5.07
232 233 3.697542 TCCTGCTATAAGTGTTGACGCTA 59.302 43.478 0.00 0.00 35.32 4.26
233 234 4.341235 TCCTGCTATAAGTGTTGACGCTAT 59.659 41.667 0.00 0.00 35.32 2.97
234 235 4.681942 CCTGCTATAAGTGTTGACGCTATC 59.318 45.833 0.00 0.00 35.32 2.08
235 236 4.617959 TGCTATAAGTGTTGACGCTATCC 58.382 43.478 0.00 0.00 35.32 2.59
236 237 4.098807 TGCTATAAGTGTTGACGCTATCCA 59.901 41.667 0.00 0.00 35.32 3.41
237 238 5.047847 GCTATAAGTGTTGACGCTATCCAA 58.952 41.667 0.00 0.00 35.32 3.53
238 239 5.050972 GCTATAAGTGTTGACGCTATCCAAC 60.051 44.000 0.00 0.00 42.04 3.77
239 240 3.402628 AAGTGTTGACGCTATCCAACT 57.597 42.857 0.00 0.00 42.16 3.16
240 241 4.530710 AAGTGTTGACGCTATCCAACTA 57.469 40.909 0.00 0.00 42.16 2.24
241 242 4.737855 AGTGTTGACGCTATCCAACTAT 57.262 40.909 0.00 0.00 42.16 2.12
242 243 5.847111 AGTGTTGACGCTATCCAACTATA 57.153 39.130 0.00 0.00 42.16 1.31
243 244 6.216801 AGTGTTGACGCTATCCAACTATAA 57.783 37.500 0.00 0.00 42.16 0.98
244 245 6.636705 AGTGTTGACGCTATCCAACTATAAA 58.363 36.000 0.00 0.00 42.16 1.40
245 246 7.272978 AGTGTTGACGCTATCCAACTATAAAT 58.727 34.615 0.00 0.00 42.16 1.40
246 247 8.418662 AGTGTTGACGCTATCCAACTATAAATA 58.581 33.333 0.00 0.00 42.16 1.40
247 248 8.700644 GTGTTGACGCTATCCAACTATAAATAG 58.299 37.037 0.00 0.00 42.16 1.73
248 249 8.635328 TGTTGACGCTATCCAACTATAAATAGA 58.365 33.333 4.02 0.00 42.16 1.98
249 250 8.913656 GTTGACGCTATCCAACTATAAATAGAC 58.086 37.037 4.02 0.00 39.47 2.59
250 251 7.303261 TGACGCTATCCAACTATAAATAGACG 58.697 38.462 4.02 0.00 34.50 4.18
251 252 7.173735 TGACGCTATCCAACTATAAATAGACGA 59.826 37.037 4.02 0.00 34.50 4.20
252 253 7.528307 ACGCTATCCAACTATAAATAGACGAG 58.472 38.462 4.02 0.00 34.50 4.18
253 254 7.389884 ACGCTATCCAACTATAAATAGACGAGA 59.610 37.037 4.02 0.00 34.50 4.04
254 255 8.235226 CGCTATCCAACTATAAATAGACGAGAA 58.765 37.037 4.02 0.00 34.50 2.87
255 256 9.344309 GCTATCCAACTATAAATAGACGAGAAC 57.656 37.037 4.02 0.00 34.50 3.01
256 257 9.843334 CTATCCAACTATAAATAGACGAGAACC 57.157 37.037 4.02 0.00 34.50 3.62
257 258 7.649533 TCCAACTATAAATAGACGAGAACCA 57.350 36.000 4.02 0.00 34.50 3.67
258 259 7.713750 TCCAACTATAAATAGACGAGAACCAG 58.286 38.462 4.02 0.00 34.50 4.00
259 260 7.558807 TCCAACTATAAATAGACGAGAACCAGA 59.441 37.037 4.02 0.00 34.50 3.86
260 261 8.195436 CCAACTATAAATAGACGAGAACCAGAA 58.805 37.037 4.02 0.00 34.50 3.02
261 262 9.751542 CAACTATAAATAGACGAGAACCAGAAT 57.248 33.333 4.02 0.00 34.50 2.40
262 263 9.968870 AACTATAAATAGACGAGAACCAGAATC 57.031 33.333 4.02 0.00 34.50 2.52
263 264 9.132923 ACTATAAATAGACGAGAACCAGAATCA 57.867 33.333 4.02 0.00 34.50 2.57
266 267 6.723298 AATAGACGAGAACCAGAATCATCT 57.277 37.500 0.00 0.00 35.88 2.90
267 268 4.647424 AGACGAGAACCAGAATCATCTC 57.353 45.455 0.00 0.00 35.95 2.75
268 269 4.277476 AGACGAGAACCAGAATCATCTCT 58.723 43.478 0.00 0.00 36.91 3.10
269 270 5.441500 AGACGAGAACCAGAATCATCTCTA 58.558 41.667 0.00 0.00 36.91 2.43
270 271 5.530915 AGACGAGAACCAGAATCATCTCTAG 59.469 44.000 0.00 0.00 36.91 2.43
271 272 4.037446 ACGAGAACCAGAATCATCTCTAGC 59.963 45.833 0.00 0.00 36.91 3.42
272 273 4.278170 CGAGAACCAGAATCATCTCTAGCT 59.722 45.833 0.00 0.00 36.91 3.32
273 274 5.221224 CGAGAACCAGAATCATCTCTAGCTT 60.221 44.000 0.00 0.00 36.91 3.74
274 275 6.558488 AGAACCAGAATCATCTCTAGCTTT 57.442 37.500 0.00 0.00 32.03 3.51
275 276 7.469318 CGAGAACCAGAATCATCTCTAGCTTTA 60.469 40.741 0.00 0.00 36.91 1.85
276 277 7.725251 AGAACCAGAATCATCTCTAGCTTTAG 58.275 38.462 0.00 0.00 32.03 1.85
277 278 7.344352 AGAACCAGAATCATCTCTAGCTTTAGT 59.656 37.037 0.00 0.00 32.03 2.24
278 279 6.815089 ACCAGAATCATCTCTAGCTTTAGTG 58.185 40.000 0.00 0.00 32.03 2.74
279 280 5.695816 CCAGAATCATCTCTAGCTTTAGTGC 59.304 44.000 0.00 0.00 32.03 4.40
280 281 6.462768 CCAGAATCATCTCTAGCTTTAGTGCT 60.463 42.308 0.00 0.00 39.37 4.40
281 282 7.255766 CCAGAATCATCTCTAGCTTTAGTGCTA 60.256 40.741 0.00 0.00 37.92 3.49
290 291 2.485814 AGCTTTAGTGCTAGCAAAGTGC 59.514 45.455 21.29 18.88 42.10 4.40
305 306 5.850931 GCAAAGTGCTTGAATAAAGAATGC 58.149 37.500 0.00 0.00 40.96 3.56
306 307 5.163923 GCAAAGTGCTTGAATAAAGAATGCC 60.164 40.000 0.00 0.00 40.96 4.40
307 308 5.726980 AAGTGCTTGAATAAAGAATGCCA 57.273 34.783 0.00 0.00 38.24 4.92
308 309 5.726980 AGTGCTTGAATAAAGAATGCCAA 57.273 34.783 0.00 0.00 38.24 4.52
309 310 6.100404 AGTGCTTGAATAAAGAATGCCAAA 57.900 33.333 0.00 0.00 38.24 3.28
310 311 6.523840 AGTGCTTGAATAAAGAATGCCAAAA 58.476 32.000 0.00 0.00 38.24 2.44
311 312 6.991531 AGTGCTTGAATAAAGAATGCCAAAAA 59.008 30.769 0.00 0.00 38.24 1.94
312 313 7.662669 AGTGCTTGAATAAAGAATGCCAAAAAT 59.337 29.630 0.00 0.00 38.24 1.82
313 314 7.747357 GTGCTTGAATAAAGAATGCCAAAAATG 59.253 33.333 0.00 0.00 38.24 2.32
314 315 7.660617 TGCTTGAATAAAGAATGCCAAAAATGA 59.339 29.630 0.00 0.00 38.24 2.57
315 316 8.505625 GCTTGAATAAAGAATGCCAAAAATGAA 58.494 29.630 0.00 0.00 38.24 2.57
325 326 9.995003 AGAATGCCAAAAATGAATTTAGTAACA 57.005 25.926 0.00 0.00 0.00 2.41
328 329 9.941325 ATGCCAAAAATGAATTTAGTAACATCA 57.059 25.926 0.60 0.60 0.00 3.07
329 330 9.770097 TGCCAAAAATGAATTTAGTAACATCAA 57.230 25.926 1.97 0.00 0.00 2.57
356 357 9.457436 TCCTATTTACCAAAAAGTTCTATGGTC 57.543 33.333 9.67 0.00 44.73 4.02
357 358 9.238368 CCTATTTACCAAAAAGTTCTATGGTCA 57.762 33.333 9.67 0.00 44.73 4.02
362 363 7.462571 ACCAAAAAGTTCTATGGTCATTACC 57.537 36.000 2.28 0.00 42.36 2.85
370 371 4.061699 GGTCATTACCGGGTCCCT 57.938 61.111 6.32 0.00 35.62 4.20
371 372 1.828081 GGTCATTACCGGGTCCCTC 59.172 63.158 6.32 0.00 35.62 4.30
372 373 1.440476 GTCATTACCGGGTCCCTCG 59.560 63.158 6.32 0.00 0.00 4.63
373 374 1.000739 TCATTACCGGGTCCCTCGT 59.999 57.895 6.32 4.51 0.00 4.18
374 375 0.615544 TCATTACCGGGTCCCTCGTT 60.616 55.000 6.32 0.00 0.00 3.85
375 376 0.251073 CATTACCGGGTCCCTCGTTT 59.749 55.000 6.32 0.00 0.00 3.60
376 377 0.538584 ATTACCGGGTCCCTCGTTTC 59.461 55.000 6.32 0.00 0.00 2.78
377 378 0.831288 TTACCGGGTCCCTCGTTTCA 60.831 55.000 6.32 0.00 0.00 2.69
378 379 1.252904 TACCGGGTCCCTCGTTTCAG 61.253 60.000 6.32 0.00 0.00 3.02
379 380 2.280552 CCGGGTCCCTCGTTTCAGA 61.281 63.158 6.29 0.00 0.00 3.27
380 381 1.215647 CGGGTCCCTCGTTTCAGAG 59.784 63.158 6.29 0.00 37.97 3.35
381 382 1.248785 CGGGTCCCTCGTTTCAGAGA 61.249 60.000 6.29 0.00 40.57 3.10
382 383 0.974383 GGGTCCCTCGTTTCAGAGAA 59.026 55.000 0.00 0.00 40.57 2.87
383 384 1.337917 GGGTCCCTCGTTTCAGAGAAC 60.338 57.143 0.00 0.00 40.57 3.01
384 385 1.337917 GGTCCCTCGTTTCAGAGAACC 60.338 57.143 0.00 0.15 40.57 3.62
385 386 1.619332 GTCCCTCGTTTCAGAGAACCT 59.381 52.381 0.00 0.00 40.57 3.50
386 387 1.618837 TCCCTCGTTTCAGAGAACCTG 59.381 52.381 0.00 0.00 44.27 4.00
387 388 1.344763 CCCTCGTTTCAGAGAACCTGT 59.655 52.381 0.00 0.00 43.38 4.00
388 389 2.561419 CCCTCGTTTCAGAGAACCTGTA 59.439 50.000 0.00 0.00 43.38 2.74
389 390 3.367498 CCCTCGTTTCAGAGAACCTGTAG 60.367 52.174 0.00 0.00 43.38 2.74
390 391 3.256136 CCTCGTTTCAGAGAACCTGTAGT 59.744 47.826 0.00 0.00 43.38 2.73
391 392 4.262079 CCTCGTTTCAGAGAACCTGTAGTT 60.262 45.833 0.00 0.00 43.38 2.24
401 402 3.857157 AACCTGTAGTTCAGAAAGGCA 57.143 42.857 0.00 0.00 46.27 4.75
402 403 3.409026 ACCTGTAGTTCAGAAAGGCAG 57.591 47.619 0.00 1.53 46.27 4.85
403 404 2.079925 CCTGTAGTTCAGAAAGGCAGC 58.920 52.381 0.00 0.00 46.27 5.25
404 405 2.550855 CCTGTAGTTCAGAAAGGCAGCA 60.551 50.000 0.00 0.00 46.27 4.41
405 406 3.141398 CTGTAGTTCAGAAAGGCAGCAA 58.859 45.455 0.00 0.00 46.27 3.91
406 407 2.878406 TGTAGTTCAGAAAGGCAGCAAC 59.122 45.455 0.00 0.00 0.00 4.17
407 408 2.057137 AGTTCAGAAAGGCAGCAACA 57.943 45.000 0.00 0.00 0.00 3.33
408 409 2.590821 AGTTCAGAAAGGCAGCAACAT 58.409 42.857 0.00 0.00 0.00 2.71
409 410 2.555757 AGTTCAGAAAGGCAGCAACATC 59.444 45.455 0.00 0.00 0.00 3.06
410 411 1.159285 TCAGAAAGGCAGCAACATCG 58.841 50.000 0.00 0.00 0.00 3.84
411 412 0.877071 CAGAAAGGCAGCAACATCGT 59.123 50.000 0.00 0.00 0.00 3.73
412 413 2.076100 CAGAAAGGCAGCAACATCGTA 58.924 47.619 0.00 0.00 0.00 3.43
413 414 2.076863 AGAAAGGCAGCAACATCGTAC 58.923 47.619 0.00 0.00 0.00 3.67
414 415 1.130561 GAAAGGCAGCAACATCGTACC 59.869 52.381 0.00 0.00 0.00 3.34
415 416 0.324943 AAGGCAGCAACATCGTACCT 59.675 50.000 0.00 0.00 0.00 3.08
416 417 0.391661 AGGCAGCAACATCGTACCTG 60.392 55.000 0.00 0.00 0.00 4.00
417 418 0.391130 GGCAGCAACATCGTACCTGA 60.391 55.000 0.00 0.00 0.00 3.86
418 419 1.438651 GCAGCAACATCGTACCTGAA 58.561 50.000 0.00 0.00 0.00 3.02
419 420 1.804151 GCAGCAACATCGTACCTGAAA 59.196 47.619 0.00 0.00 0.00 2.69
420 421 2.412847 GCAGCAACATCGTACCTGAAAC 60.413 50.000 0.00 0.00 0.00 2.78
421 422 2.805671 CAGCAACATCGTACCTGAAACA 59.194 45.455 0.00 0.00 0.00 2.83
422 423 3.249799 CAGCAACATCGTACCTGAAACAA 59.750 43.478 0.00 0.00 0.00 2.83
423 424 3.250040 AGCAACATCGTACCTGAAACAAC 59.750 43.478 0.00 0.00 0.00 3.32
424 425 3.002862 GCAACATCGTACCTGAAACAACA 59.997 43.478 0.00 0.00 0.00 3.33
425 426 4.496673 GCAACATCGTACCTGAAACAACAA 60.497 41.667 0.00 0.00 0.00 2.83
426 427 5.204833 CAACATCGTACCTGAAACAACAAG 58.795 41.667 0.00 0.00 0.00 3.16
427 428 3.813166 ACATCGTACCTGAAACAACAAGG 59.187 43.478 0.00 0.00 0.00 3.61
428 429 3.823281 TCGTACCTGAAACAACAAGGA 57.177 42.857 0.00 0.00 0.00 3.36
429 430 4.345859 TCGTACCTGAAACAACAAGGAT 57.654 40.909 0.00 0.00 0.00 3.24
430 431 4.710324 TCGTACCTGAAACAACAAGGATT 58.290 39.130 0.00 0.00 0.00 3.01
431 432 5.856156 TCGTACCTGAAACAACAAGGATTA 58.144 37.500 0.00 0.00 0.00 1.75
432 433 5.929992 TCGTACCTGAAACAACAAGGATTAG 59.070 40.000 0.00 0.00 0.00 1.73
433 434 5.699458 CGTACCTGAAACAACAAGGATTAGT 59.301 40.000 0.00 0.00 0.00 2.24
434 435 6.128634 CGTACCTGAAACAACAAGGATTAGTC 60.129 42.308 0.00 0.00 0.00 2.59
435 436 5.690865 ACCTGAAACAACAAGGATTAGTCA 58.309 37.500 0.00 0.00 0.00 3.41
436 437 5.765182 ACCTGAAACAACAAGGATTAGTCAG 59.235 40.000 0.00 0.00 0.00 3.51
437 438 5.182001 CCTGAAACAACAAGGATTAGTCAGG 59.818 44.000 0.00 0.00 42.54 3.86
438 439 4.518970 TGAAACAACAAGGATTAGTCAGGC 59.481 41.667 0.00 0.00 0.00 4.85
439 440 3.788227 ACAACAAGGATTAGTCAGGCA 57.212 42.857 0.00 0.00 0.00 4.75
440 441 4.307032 ACAACAAGGATTAGTCAGGCAT 57.693 40.909 0.00 0.00 0.00 4.40
441 442 5.435686 ACAACAAGGATTAGTCAGGCATA 57.564 39.130 0.00 0.00 0.00 3.14
442 443 6.006275 ACAACAAGGATTAGTCAGGCATAT 57.994 37.500 0.00 0.00 0.00 1.78
443 444 7.136822 ACAACAAGGATTAGTCAGGCATATA 57.863 36.000 0.00 0.00 0.00 0.86
444 445 7.573710 ACAACAAGGATTAGTCAGGCATATAA 58.426 34.615 0.00 0.00 0.00 0.98
445 446 8.052748 ACAACAAGGATTAGTCAGGCATATAAA 58.947 33.333 0.00 0.00 0.00 1.40
446 447 8.902806 CAACAAGGATTAGTCAGGCATATAAAA 58.097 33.333 0.00 0.00 0.00 1.52
447 448 8.451908 ACAAGGATTAGTCAGGCATATAAAAC 57.548 34.615 0.00 0.00 0.00 2.43
448 449 8.275040 ACAAGGATTAGTCAGGCATATAAAACT 58.725 33.333 0.00 0.00 0.00 2.66
449 450 8.562892 CAAGGATTAGTCAGGCATATAAAACTG 58.437 37.037 0.00 0.00 0.00 3.16
450 451 8.034313 AGGATTAGTCAGGCATATAAAACTGA 57.966 34.615 0.00 0.00 37.61 3.41
451 452 8.494433 AGGATTAGTCAGGCATATAAAACTGAA 58.506 33.333 0.00 0.00 41.17 3.02
452 453 9.289782 GGATTAGTCAGGCATATAAAACTGAAT 57.710 33.333 0.00 0.00 41.17 2.57
454 455 6.949352 AGTCAGGCATATAAAACTGAATGG 57.051 37.500 0.00 0.00 41.17 3.16
455 456 6.426587 AGTCAGGCATATAAAACTGAATGGT 58.573 36.000 0.00 0.00 41.17 3.55
456 457 6.891908 AGTCAGGCATATAAAACTGAATGGTT 59.108 34.615 0.00 0.00 41.17 3.67
457 458 7.067494 AGTCAGGCATATAAAACTGAATGGTTC 59.933 37.037 0.00 0.00 41.17 3.62
458 459 6.889177 TCAGGCATATAAAACTGAATGGTTCA 59.111 34.615 0.00 0.00 37.06 3.18
459 460 7.560991 TCAGGCATATAAAACTGAATGGTTCAT 59.439 33.333 0.00 0.00 39.30 2.57
460 461 7.650504 CAGGCATATAAAACTGAATGGTTCATG 59.349 37.037 0.00 0.00 39.30 3.07
461 462 6.421801 GGCATATAAAACTGAATGGTTCATGC 59.578 38.462 0.00 0.00 39.30 4.06
462 463 6.979817 GCATATAAAACTGAATGGTTCATGCA 59.020 34.615 0.00 0.00 39.30 3.96
463 464 7.492020 GCATATAAAACTGAATGGTTCATGCAA 59.508 33.333 0.00 0.00 39.30 4.08
464 465 8.810427 CATATAAAACTGAATGGTTCATGCAAC 58.190 33.333 0.00 0.00 39.30 4.17
465 466 4.669206 AAACTGAATGGTTCATGCAACA 57.331 36.364 0.00 0.00 39.30 3.33
466 467 3.648339 ACTGAATGGTTCATGCAACAC 57.352 42.857 0.00 0.00 39.30 3.32
467 468 2.957680 ACTGAATGGTTCATGCAACACA 59.042 40.909 0.00 6.22 39.30 3.72
468 469 3.005050 ACTGAATGGTTCATGCAACACAG 59.995 43.478 0.00 0.49 39.30 3.66
469 470 3.220940 TGAATGGTTCATGCAACACAGA 58.779 40.909 0.00 0.00 36.61 3.41
470 471 3.004629 TGAATGGTTCATGCAACACAGAC 59.995 43.478 0.00 0.00 36.61 3.51
471 472 1.317613 TGGTTCATGCAACACAGACC 58.682 50.000 0.00 0.00 36.61 3.85
472 473 0.598065 GGTTCATGCAACACAGACCC 59.402 55.000 0.00 0.00 36.61 4.46
473 474 1.317613 GTTCATGCAACACAGACCCA 58.682 50.000 0.00 0.00 34.76 4.51
474 475 1.001378 GTTCATGCAACACAGACCCAC 60.001 52.381 0.00 0.00 34.76 4.61
475 476 0.537143 TCATGCAACACAGACCCACC 60.537 55.000 0.00 0.00 0.00 4.61
476 477 1.228552 ATGCAACACAGACCCACCC 60.229 57.895 0.00 0.00 0.00 4.61
477 478 2.005606 ATGCAACACAGACCCACCCA 62.006 55.000 0.00 0.00 0.00 4.51
478 479 2.193536 GCAACACAGACCCACCCAC 61.194 63.158 0.00 0.00 0.00 4.61
479 480 1.225983 CAACACAGACCCACCCACA 59.774 57.895 0.00 0.00 0.00 4.17
480 481 1.101049 CAACACAGACCCACCCACAC 61.101 60.000 0.00 0.00 0.00 3.82
481 482 1.567208 AACACAGACCCACCCACACA 61.567 55.000 0.00 0.00 0.00 3.72
482 483 1.352622 ACACAGACCCACCCACACAT 61.353 55.000 0.00 0.00 0.00 3.21
483 484 0.178992 CACAGACCCACCCACACATT 60.179 55.000 0.00 0.00 0.00 2.71
484 485 1.073125 CACAGACCCACCCACACATTA 59.927 52.381 0.00 0.00 0.00 1.90
485 486 1.073284 ACAGACCCACCCACACATTAC 59.927 52.381 0.00 0.00 0.00 1.89
486 487 0.323629 AGACCCACCCACACATTACG 59.676 55.000 0.00 0.00 0.00 3.18
487 488 1.302993 ACCCACCCACACATTACGC 60.303 57.895 0.00 0.00 0.00 4.42
488 489 2.395360 CCCACCCACACATTACGCG 61.395 63.158 3.53 3.53 0.00 6.01
489 490 2.478746 CACCCACACATTACGCGC 59.521 61.111 5.73 0.00 0.00 6.86
490 491 3.115892 ACCCACACATTACGCGCG 61.116 61.111 30.96 30.96 0.00 6.86
491 492 4.514569 CCCACACATTACGCGCGC 62.515 66.667 32.58 23.91 0.00 6.86
502 503 4.044024 CGCGCGCGGAAAATTAAA 57.956 50.000 43.28 0.00 35.56 1.52
503 504 2.561366 CGCGCGCGGAAAATTAAAT 58.439 47.368 43.28 0.00 35.56 1.40
504 505 0.492737 CGCGCGCGGAAAATTAAATC 59.507 50.000 43.28 8.83 35.56 2.17
505 506 1.540407 GCGCGCGGAAAATTAAATCA 58.460 45.000 33.06 0.00 0.00 2.57
506 507 1.251762 GCGCGCGGAAAATTAAATCAC 59.748 47.619 33.06 5.11 0.00 3.06
507 508 2.510874 CGCGCGGAAAATTAAATCACA 58.489 42.857 24.84 0.00 0.00 3.58
508 509 2.911723 CGCGCGGAAAATTAAATCACAA 59.088 40.909 24.84 0.00 0.00 3.33
509 510 3.362237 CGCGCGGAAAATTAAATCACAAA 59.638 39.130 24.84 0.00 0.00 2.83
510 511 4.143514 CGCGCGGAAAATTAAATCACAAAA 60.144 37.500 24.84 0.00 0.00 2.44
511 512 5.610552 CGCGCGGAAAATTAAATCACAAAAA 60.611 36.000 24.84 0.00 0.00 1.94
512 513 6.303370 GCGCGGAAAATTAAATCACAAAAAT 58.697 32.000 8.83 0.00 0.00 1.82
513 514 7.449027 GCGCGGAAAATTAAATCACAAAAATA 58.551 30.769 8.83 0.00 0.00 1.40
514 515 7.630606 GCGCGGAAAATTAAATCACAAAAATAG 59.369 33.333 8.83 0.00 0.00 1.73
515 516 8.855279 CGCGGAAAATTAAATCACAAAAATAGA 58.145 29.630 0.00 0.00 0.00 1.98
516 517 9.952341 GCGGAAAATTAAATCACAAAAATAGAC 57.048 29.630 0.00 0.00 0.00 2.59
524 525 9.689976 TTAAATCACAAAAATAGACCACATGTG 57.310 29.630 19.31 19.31 38.36 3.21
525 526 7.523293 AATCACAAAAATAGACCACATGTGA 57.477 32.000 27.46 7.46 46.52 3.58
526 527 6.312399 TCACAAAAATAGACCACATGTGAC 57.688 37.500 27.46 18.99 40.31 3.67
527 528 5.825151 TCACAAAAATAGACCACATGTGACA 59.175 36.000 27.46 9.05 40.31 3.58
528 529 6.489700 TCACAAAAATAGACCACATGTGACAT 59.510 34.615 27.46 11.96 40.31 3.06
529 530 6.803320 CACAAAAATAGACCACATGTGACATC 59.197 38.462 27.46 19.43 39.10 3.06
530 531 6.489700 ACAAAAATAGACCACATGTGACATCA 59.510 34.615 27.46 8.34 0.00 3.07
531 532 7.014134 ACAAAAATAGACCACATGTGACATCAA 59.986 33.333 27.46 7.63 0.00 2.57
532 533 7.523293 AAAATAGACCACATGTGACATCAAA 57.477 32.000 27.46 13.01 0.00 2.69
533 534 7.707624 AAATAGACCACATGTGACATCAAAT 57.292 32.000 27.46 14.42 0.00 2.32
534 535 6.688637 ATAGACCACATGTGACATCAAATG 57.311 37.500 27.46 10.03 45.02 2.32
535 536 4.654915 AGACCACATGTGACATCAAATGA 58.345 39.130 27.46 0.00 42.78 2.57
536 537 4.456911 AGACCACATGTGACATCAAATGAC 59.543 41.667 27.46 7.28 42.78 3.06
537 538 4.143543 ACCACATGTGACATCAAATGACA 58.856 39.130 27.46 0.00 42.78 3.58
545 546 5.694231 TGACATCAAATGACACAAAGGAG 57.306 39.130 0.00 0.00 30.39 3.69
546 547 4.520111 TGACATCAAATGACACAAAGGAGG 59.480 41.667 0.00 0.00 30.39 4.30
547 548 4.728772 ACATCAAATGACACAAAGGAGGA 58.271 39.130 0.00 0.00 0.00 3.71
548 549 5.139727 ACATCAAATGACACAAAGGAGGAA 58.860 37.500 0.00 0.00 0.00 3.36
549 550 5.598005 ACATCAAATGACACAAAGGAGGAAA 59.402 36.000 0.00 0.00 0.00 3.13
550 551 6.268387 ACATCAAATGACACAAAGGAGGAAAT 59.732 34.615 0.00 0.00 0.00 2.17
551 552 6.088016 TCAAATGACACAAAGGAGGAAATG 57.912 37.500 0.00 0.00 0.00 2.32
552 553 5.010922 TCAAATGACACAAAGGAGGAAATGG 59.989 40.000 0.00 0.00 0.00 3.16
553 554 3.593442 TGACACAAAGGAGGAAATGGT 57.407 42.857 0.00 0.00 0.00 3.55
554 555 3.221771 TGACACAAAGGAGGAAATGGTG 58.778 45.455 0.00 0.00 0.00 4.17
555 556 3.117701 TGACACAAAGGAGGAAATGGTGA 60.118 43.478 0.00 0.00 0.00 4.02
556 557 3.888930 GACACAAAGGAGGAAATGGTGAA 59.111 43.478 0.00 0.00 0.00 3.18
557 558 4.285863 ACACAAAGGAGGAAATGGTGAAA 58.714 39.130 0.00 0.00 0.00 2.69
558 559 4.901250 ACACAAAGGAGGAAATGGTGAAAT 59.099 37.500 0.00 0.00 0.00 2.17
559 560 6.074648 ACACAAAGGAGGAAATGGTGAAATA 58.925 36.000 0.00 0.00 0.00 1.40
560 561 6.725834 ACACAAAGGAGGAAATGGTGAAATAT 59.274 34.615 0.00 0.00 0.00 1.28
561 562 7.037438 CACAAAGGAGGAAATGGTGAAATATG 58.963 38.462 0.00 0.00 0.00 1.78
562 563 6.725834 ACAAAGGAGGAAATGGTGAAATATGT 59.274 34.615 0.00 0.00 0.00 2.29
563 564 7.893302 ACAAAGGAGGAAATGGTGAAATATGTA 59.107 33.333 0.00 0.00 0.00 2.29
564 565 8.917088 CAAAGGAGGAAATGGTGAAATATGTAT 58.083 33.333 0.00 0.00 0.00 2.29
1109 1110 0.879090 GGCGTTGATCGAAGGGTTTT 59.121 50.000 0.00 0.00 42.86 2.43
1514 1515 3.738830 TGTAGGTATGGTAATCGCACC 57.261 47.619 0.00 0.00 39.20 5.01
2232 2236 0.248289 GCTGGTAACCGCTAGGACAA 59.752 55.000 0.00 0.00 41.02 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.182227 GGTGGTATAAAGCTTACTTTCAACATC 58.818 37.037 0.00 0.00 42.59 3.06
10 11 9.080097 CTGATACTAGGTGGTATAAAGCTTACT 57.920 37.037 0.00 0.00 33.17 2.24
11 12 7.813627 GCTGATACTAGGTGGTATAAAGCTTAC 59.186 40.741 0.00 0.00 38.08 2.34
12 13 7.039223 GGCTGATACTAGGTGGTATAAAGCTTA 60.039 40.741 0.00 0.00 39.42 3.09
13 14 6.239629 GGCTGATACTAGGTGGTATAAAGCTT 60.240 42.308 14.84 0.00 39.42 3.74
14 15 5.246429 GGCTGATACTAGGTGGTATAAAGCT 59.754 44.000 14.84 0.00 39.42 3.74
15 16 5.246429 AGGCTGATACTAGGTGGTATAAAGC 59.754 44.000 10.10 10.10 39.11 3.51
16 17 6.919775 AGGCTGATACTAGGTGGTATAAAG 57.080 41.667 0.00 0.00 33.17 1.85
17 18 8.786710 TTTAGGCTGATACTAGGTGGTATAAA 57.213 34.615 0.00 0.00 33.17 1.40
18 19 8.008922 ACTTTAGGCTGATACTAGGTGGTATAA 58.991 37.037 0.00 0.00 33.17 0.98
19 20 7.533083 ACTTTAGGCTGATACTAGGTGGTATA 58.467 38.462 0.00 0.00 33.17 1.47
20 21 6.382925 ACTTTAGGCTGATACTAGGTGGTAT 58.617 40.000 0.00 0.00 35.39 2.73
21 22 5.774179 ACTTTAGGCTGATACTAGGTGGTA 58.226 41.667 0.00 0.00 0.00 3.25
22 23 4.621769 ACTTTAGGCTGATACTAGGTGGT 58.378 43.478 0.00 0.00 0.00 4.16
23 24 5.834204 ACTACTTTAGGCTGATACTAGGTGG 59.166 44.000 0.00 0.00 0.00 4.61
24 25 6.963083 ACTACTTTAGGCTGATACTAGGTG 57.037 41.667 0.00 0.00 0.00 4.00
25 26 9.657728 ATTTACTACTTTAGGCTGATACTAGGT 57.342 33.333 0.00 0.00 0.00 3.08
26 27 9.915629 CATTTACTACTTTAGGCTGATACTAGG 57.084 37.037 0.00 0.00 0.00 3.02
27 28 9.413048 GCATTTACTACTTTAGGCTGATACTAG 57.587 37.037 0.00 0.00 0.00 2.57
28 29 8.920174 TGCATTTACTACTTTAGGCTGATACTA 58.080 33.333 0.00 0.00 0.00 1.82
29 30 7.711339 GTGCATTTACTACTTTAGGCTGATACT 59.289 37.037 0.00 0.00 0.00 2.12
30 31 7.494625 TGTGCATTTACTACTTTAGGCTGATAC 59.505 37.037 0.00 0.00 0.00 2.24
31 32 7.561251 TGTGCATTTACTACTTTAGGCTGATA 58.439 34.615 0.00 0.00 0.00 2.15
32 33 6.414732 TGTGCATTTACTACTTTAGGCTGAT 58.585 36.000 0.00 0.00 0.00 2.90
33 34 5.800296 TGTGCATTTACTACTTTAGGCTGA 58.200 37.500 0.00 0.00 0.00 4.26
34 35 6.403636 CCTTGTGCATTTACTACTTTAGGCTG 60.404 42.308 0.00 0.00 0.00 4.85
35 36 5.648092 CCTTGTGCATTTACTACTTTAGGCT 59.352 40.000 0.00 0.00 0.00 4.58
36 37 5.414765 ACCTTGTGCATTTACTACTTTAGGC 59.585 40.000 0.00 0.00 0.00 3.93
37 38 7.822822 AGTACCTTGTGCATTTACTACTTTAGG 59.177 37.037 0.00 0.00 0.00 2.69
38 39 8.773404 AGTACCTTGTGCATTTACTACTTTAG 57.227 34.615 0.00 0.00 0.00 1.85
40 41 9.563748 TTAAGTACCTTGTGCATTTACTACTTT 57.436 29.630 11.83 0.00 0.00 2.66
41 42 9.563748 TTTAAGTACCTTGTGCATTTACTACTT 57.436 29.630 11.49 11.49 0.00 2.24
42 43 9.216117 CTTTAAGTACCTTGTGCATTTACTACT 57.784 33.333 0.00 0.00 0.00 2.57
43 44 8.996271 ACTTTAAGTACCTTGTGCATTTACTAC 58.004 33.333 0.00 0.00 0.00 2.73
44 45 9.211485 GACTTTAAGTACCTTGTGCATTTACTA 57.789 33.333 0.00 0.00 0.00 1.82
45 46 7.717875 TGACTTTAAGTACCTTGTGCATTTACT 59.282 33.333 0.00 0.00 0.00 2.24
46 47 7.867752 TGACTTTAAGTACCTTGTGCATTTAC 58.132 34.615 0.00 0.00 0.00 2.01
47 48 8.347035 GTTGACTTTAAGTACCTTGTGCATTTA 58.653 33.333 0.00 0.00 0.00 1.40
48 49 6.952773 TGACTTTAAGTACCTTGTGCATTT 57.047 33.333 0.00 0.00 0.00 2.32
49 50 6.546034 AGTTGACTTTAAGTACCTTGTGCATT 59.454 34.615 0.00 0.00 0.00 3.56
50 51 6.062095 AGTTGACTTTAAGTACCTTGTGCAT 58.938 36.000 0.00 0.00 0.00 3.96
51 52 5.433526 AGTTGACTTTAAGTACCTTGTGCA 58.566 37.500 0.00 0.00 0.00 4.57
52 53 6.373186 AAGTTGACTTTAAGTACCTTGTGC 57.627 37.500 0.00 0.00 30.82 4.57
53 54 9.106070 AGTTAAGTTGACTTTAAGTACCTTGTG 57.894 33.333 0.00 0.00 37.40 3.33
54 55 9.106070 CAGTTAAGTTGACTTTAAGTACCTTGT 57.894 33.333 0.00 0.00 37.40 3.16
55 56 9.321562 TCAGTTAAGTTGACTTTAAGTACCTTG 57.678 33.333 0.00 0.00 37.40 3.61
56 57 9.322773 GTCAGTTAAGTTGACTTTAAGTACCTT 57.677 33.333 0.00 3.47 41.29 3.50
57 58 7.930325 GGTCAGTTAAGTTGACTTTAAGTACCT 59.070 37.037 15.76 0.00 43.44 3.08
58 59 7.712205 TGGTCAGTTAAGTTGACTTTAAGTACC 59.288 37.037 15.76 0.00 43.44 3.34
59 60 8.652810 TGGTCAGTTAAGTTGACTTTAAGTAC 57.347 34.615 15.76 0.00 43.44 2.73
60 61 8.480501 ACTGGTCAGTTAAGTTGACTTTAAGTA 58.519 33.333 15.76 0.00 43.44 2.24
61 62 7.336396 ACTGGTCAGTTAAGTTGACTTTAAGT 58.664 34.615 15.76 0.00 43.44 2.24
62 63 7.787725 ACTGGTCAGTTAAGTTGACTTTAAG 57.212 36.000 15.76 11.88 43.44 1.85
63 64 8.259411 TGTACTGGTCAGTTAAGTTGACTTTAA 58.741 33.333 9.02 3.99 43.44 1.52
64 65 7.784037 TGTACTGGTCAGTTAAGTTGACTTTA 58.216 34.615 9.02 0.00 43.44 1.85
65 66 6.646267 TGTACTGGTCAGTTAAGTTGACTTT 58.354 36.000 9.02 6.80 43.44 2.66
66 67 6.229936 TGTACTGGTCAGTTAAGTTGACTT 57.770 37.500 9.02 1.60 43.44 3.01
67 68 5.864418 TGTACTGGTCAGTTAAGTTGACT 57.136 39.130 9.02 0.00 43.44 3.41
68 69 8.773404 ATAATGTACTGGTCAGTTAAGTTGAC 57.227 34.615 9.02 10.26 42.54 3.18
69 70 8.590204 TGATAATGTACTGGTCAGTTAAGTTGA 58.410 33.333 9.02 0.00 42.54 3.18
70 71 8.771920 TGATAATGTACTGGTCAGTTAAGTTG 57.228 34.615 9.02 0.00 42.54 3.16
71 72 8.594550 ACTGATAATGTACTGGTCAGTTAAGTT 58.405 33.333 9.02 3.28 45.09 2.66
72 73 8.135382 ACTGATAATGTACTGGTCAGTTAAGT 57.865 34.615 9.02 0.77 45.09 2.24
73 74 9.517609 GTACTGATAATGTACTGGTCAGTTAAG 57.482 37.037 20.47 0.00 45.09 1.85
74 75 8.472413 GGTACTGATAATGTACTGGTCAGTTAA 58.528 37.037 20.47 8.37 45.09 2.01
75 76 7.616542 TGGTACTGATAATGTACTGGTCAGTTA 59.383 37.037 20.47 10.77 45.09 2.24
76 77 6.439375 TGGTACTGATAATGTACTGGTCAGTT 59.561 38.462 20.47 10.77 45.09 3.16
78 79 6.465439 TGGTACTGATAATGTACTGGTCAG 57.535 41.667 13.05 13.05 41.47 3.51
79 80 6.041637 GGATGGTACTGATAATGTACTGGTCA 59.958 42.308 0.00 0.00 39.89 4.02
80 81 6.267928 AGGATGGTACTGATAATGTACTGGTC 59.732 42.308 0.00 0.00 39.89 4.02
81 82 6.042093 CAGGATGGTACTGATAATGTACTGGT 59.958 42.308 0.00 0.00 39.89 4.00
82 83 6.042093 ACAGGATGGTACTGATAATGTACTGG 59.958 42.308 0.00 0.00 43.62 4.00
83 84 7.055667 ACAGGATGGTACTGATAATGTACTG 57.944 40.000 0.00 0.00 43.62 2.74
84 85 8.777578 TTACAGGATGGTACTGATAATGTACT 57.222 34.615 0.00 0.00 43.62 2.73
85 86 9.826574 TTTTACAGGATGGTACTGATAATGTAC 57.173 33.333 0.00 0.00 43.62 2.90
87 88 8.548877 ACTTTTACAGGATGGTACTGATAATGT 58.451 33.333 0.00 0.00 43.62 2.71
88 89 8.830580 CACTTTTACAGGATGGTACTGATAATG 58.169 37.037 0.00 0.00 43.62 1.90
89 90 8.548877 ACACTTTTACAGGATGGTACTGATAAT 58.451 33.333 0.00 0.00 43.62 1.28
90 91 7.913789 ACACTTTTACAGGATGGTACTGATAA 58.086 34.615 0.00 0.00 43.62 1.75
91 92 7.490657 ACACTTTTACAGGATGGTACTGATA 57.509 36.000 0.00 0.00 43.62 2.15
92 93 6.374417 ACACTTTTACAGGATGGTACTGAT 57.626 37.500 0.00 0.00 43.62 2.90
93 94 5.818678 ACACTTTTACAGGATGGTACTGA 57.181 39.130 0.00 0.00 43.62 3.41
94 95 7.876068 TCTTTACACTTTTACAGGATGGTACTG 59.124 37.037 0.00 0.00 43.62 2.74
95 96 7.970102 TCTTTACACTTTTACAGGATGGTACT 58.030 34.615 0.00 0.00 43.62 2.73
96 97 8.611654 TTCTTTACACTTTTACAGGATGGTAC 57.388 34.615 0.00 0.00 43.62 3.34
97 98 7.881232 CCTTCTTTACACTTTTACAGGATGGTA 59.119 37.037 0.00 0.00 43.62 3.25
98 99 6.715264 CCTTCTTTACACTTTTACAGGATGGT 59.285 38.462 0.00 0.00 43.62 3.55
99 100 6.940298 TCCTTCTTTACACTTTTACAGGATGG 59.060 38.462 0.00 0.00 43.62 3.51
100 101 7.979444 TCCTTCTTTACACTTTTACAGGATG 57.021 36.000 0.00 0.00 46.00 3.51
101 102 7.611855 CCATCCTTCTTTACACTTTTACAGGAT 59.388 37.037 0.00 0.00 38.86 3.24
102 103 6.940298 CCATCCTTCTTTACACTTTTACAGGA 59.060 38.462 0.00 0.00 32.50 3.86
103 104 6.940298 TCCATCCTTCTTTACACTTTTACAGG 59.060 38.462 0.00 0.00 0.00 4.00
104 105 7.661847 ACTCCATCCTTCTTTACACTTTTACAG 59.338 37.037 0.00 0.00 0.00 2.74
105 106 7.444183 CACTCCATCCTTCTTTACACTTTTACA 59.556 37.037 0.00 0.00 0.00 2.41
106 107 7.660208 TCACTCCATCCTTCTTTACACTTTTAC 59.340 37.037 0.00 0.00 0.00 2.01
107 108 7.741785 TCACTCCATCCTTCTTTACACTTTTA 58.258 34.615 0.00 0.00 0.00 1.52
108 109 6.601332 TCACTCCATCCTTCTTTACACTTTT 58.399 36.000 0.00 0.00 0.00 2.27
109 110 6.187727 TCACTCCATCCTTCTTTACACTTT 57.812 37.500 0.00 0.00 0.00 2.66
110 111 5.825593 TCACTCCATCCTTCTTTACACTT 57.174 39.130 0.00 0.00 0.00 3.16
111 112 6.670027 AGTATCACTCCATCCTTCTTTACACT 59.330 38.462 0.00 0.00 0.00 3.55
112 113 6.879400 AGTATCACTCCATCCTTCTTTACAC 58.121 40.000 0.00 0.00 0.00 2.90
113 114 7.364762 GGAAGTATCACTCCATCCTTCTTTACA 60.365 40.741 0.00 0.00 0.00 2.41
114 115 6.987404 GGAAGTATCACTCCATCCTTCTTTAC 59.013 42.308 0.00 0.00 0.00 2.01
115 116 6.099845 GGGAAGTATCACTCCATCCTTCTTTA 59.900 42.308 0.00 0.00 0.00 1.85
116 117 5.104318 GGGAAGTATCACTCCATCCTTCTTT 60.104 44.000 0.00 0.00 0.00 2.52
117 118 4.410555 GGGAAGTATCACTCCATCCTTCTT 59.589 45.833 0.00 0.00 0.00 2.52
118 119 3.970640 GGGAAGTATCACTCCATCCTTCT 59.029 47.826 0.00 0.00 0.00 2.85
119 120 3.071747 GGGGAAGTATCACTCCATCCTTC 59.928 52.174 0.00 0.00 0.00 3.46
120 121 3.049344 GGGGAAGTATCACTCCATCCTT 58.951 50.000 0.00 0.00 0.00 3.36
121 122 2.022035 TGGGGAAGTATCACTCCATCCT 60.022 50.000 0.00 0.00 0.00 3.24
122 123 2.408565 TGGGGAAGTATCACTCCATCC 58.591 52.381 0.00 0.00 0.00 3.51
123 124 3.199946 TGTTGGGGAAGTATCACTCCATC 59.800 47.826 0.00 0.00 0.00 3.51
124 125 3.054361 GTGTTGGGGAAGTATCACTCCAT 60.054 47.826 0.00 0.00 0.00 3.41
125 126 2.304761 GTGTTGGGGAAGTATCACTCCA 59.695 50.000 0.00 0.00 0.00 3.86
126 127 2.304761 TGTGTTGGGGAAGTATCACTCC 59.695 50.000 0.00 0.00 0.00 3.85
127 128 3.244422 TGTGTGTTGGGGAAGTATCACTC 60.244 47.826 0.00 0.00 0.00 3.51
128 129 2.708861 TGTGTGTTGGGGAAGTATCACT 59.291 45.455 0.00 0.00 0.00 3.41
129 130 3.074412 CTGTGTGTTGGGGAAGTATCAC 58.926 50.000 0.00 0.00 0.00 3.06
130 131 2.039746 CCTGTGTGTTGGGGAAGTATCA 59.960 50.000 0.00 0.00 0.00 2.15
131 132 2.304761 TCCTGTGTGTTGGGGAAGTATC 59.695 50.000 0.00 0.00 0.00 2.24
132 133 2.039879 GTCCTGTGTGTTGGGGAAGTAT 59.960 50.000 0.00 0.00 0.00 2.12
133 134 1.418637 GTCCTGTGTGTTGGGGAAGTA 59.581 52.381 0.00 0.00 0.00 2.24
134 135 0.182775 GTCCTGTGTGTTGGGGAAGT 59.817 55.000 0.00 0.00 0.00 3.01
135 136 0.474184 AGTCCTGTGTGTTGGGGAAG 59.526 55.000 0.00 0.00 0.00 3.46
136 137 0.923358 AAGTCCTGTGTGTTGGGGAA 59.077 50.000 0.00 0.00 0.00 3.97
137 138 0.182537 CAAGTCCTGTGTGTTGGGGA 59.817 55.000 0.00 0.00 0.00 4.81
138 139 0.182537 TCAAGTCCTGTGTGTTGGGG 59.817 55.000 0.00 0.00 0.00 4.96
139 140 1.597742 CTCAAGTCCTGTGTGTTGGG 58.402 55.000 0.00 0.00 0.00 4.12
140 141 0.947244 GCTCAAGTCCTGTGTGTTGG 59.053 55.000 0.00 0.00 0.00 3.77
141 142 1.667236 TGCTCAAGTCCTGTGTGTTG 58.333 50.000 0.00 0.00 0.00 3.33
142 143 2.017049 GTTGCTCAAGTCCTGTGTGTT 58.983 47.619 0.00 0.00 0.00 3.32
143 144 1.065491 TGTTGCTCAAGTCCTGTGTGT 60.065 47.619 0.00 0.00 0.00 3.72
144 145 1.331756 GTGTTGCTCAAGTCCTGTGTG 59.668 52.381 0.00 0.00 0.00 3.82
145 146 1.065491 TGTGTTGCTCAAGTCCTGTGT 60.065 47.619 0.00 0.00 0.00 3.72
146 147 1.667236 TGTGTTGCTCAAGTCCTGTG 58.333 50.000 0.00 0.00 0.00 3.66
147 148 2.418368 TTGTGTTGCTCAAGTCCTGT 57.582 45.000 0.00 0.00 0.00 4.00
148 149 2.684881 ACTTTGTGTTGCTCAAGTCCTG 59.315 45.455 0.00 0.00 0.00 3.86
149 150 3.004752 ACTTTGTGTTGCTCAAGTCCT 57.995 42.857 0.00 0.00 0.00 3.85
150 151 3.782889 AACTTTGTGTTGCTCAAGTCC 57.217 42.857 0.00 0.00 37.52 3.85
151 152 5.734855 TCTAACTTTGTGTTGCTCAAGTC 57.265 39.130 0.00 0.00 39.55 3.01
152 153 7.282224 TGTTATCTAACTTTGTGTTGCTCAAGT 59.718 33.333 2.11 0.00 39.55 3.16
153 154 7.639039 TGTTATCTAACTTTGTGTTGCTCAAG 58.361 34.615 2.11 0.00 39.55 3.02
154 155 7.561021 TGTTATCTAACTTTGTGTTGCTCAA 57.439 32.000 2.11 0.00 39.55 3.02
155 156 7.282224 ACTTGTTATCTAACTTTGTGTTGCTCA 59.718 33.333 2.11 0.00 39.55 4.26
156 157 7.587757 CACTTGTTATCTAACTTTGTGTTGCTC 59.412 37.037 2.11 0.00 39.55 4.26
157 158 7.067008 ACACTTGTTATCTAACTTTGTGTTGCT 59.933 33.333 14.34 1.66 39.18 3.91
158 159 7.193595 ACACTTGTTATCTAACTTTGTGTTGC 58.806 34.615 14.34 0.00 39.18 4.17
159 160 9.221775 GAACACTTGTTATCTAACTTTGTGTTG 57.778 33.333 24.88 9.82 44.07 3.33
160 161 8.952278 TGAACACTTGTTATCTAACTTTGTGTT 58.048 29.630 22.65 22.65 45.09 3.32
161 162 8.500753 TGAACACTTGTTATCTAACTTTGTGT 57.499 30.769 14.34 14.34 41.29 3.72
162 163 9.781834 TTTGAACACTTGTTATCTAACTTTGTG 57.218 29.630 0.00 13.55 38.56 3.33
190 191 7.230510 AGCAGGAACAGTATTGATGTTTAAACA 59.769 33.333 22.58 22.58 40.86 2.83
191 192 7.593825 AGCAGGAACAGTATTGATGTTTAAAC 58.406 34.615 11.54 11.54 40.86 2.01
192 193 7.759489 AGCAGGAACAGTATTGATGTTTAAA 57.241 32.000 0.00 0.00 40.86 1.52
195 196 9.113838 CTTATAGCAGGAACAGTATTGATGTTT 57.886 33.333 0.00 0.00 40.86 2.83
196 197 8.267894 ACTTATAGCAGGAACAGTATTGATGTT 58.732 33.333 0.00 0.00 43.38 2.71
197 198 7.712639 CACTTATAGCAGGAACAGTATTGATGT 59.287 37.037 0.00 0.00 0.00 3.06
198 199 7.712639 ACACTTATAGCAGGAACAGTATTGATG 59.287 37.037 0.00 0.00 0.00 3.07
199 200 7.796054 ACACTTATAGCAGGAACAGTATTGAT 58.204 34.615 0.00 0.00 0.00 2.57
200 201 7.182817 ACACTTATAGCAGGAACAGTATTGA 57.817 36.000 0.00 0.00 0.00 2.57
201 202 7.549134 TCAACACTTATAGCAGGAACAGTATTG 59.451 37.037 0.00 0.00 0.00 1.90
202 203 7.549488 GTCAACACTTATAGCAGGAACAGTATT 59.451 37.037 0.00 0.00 0.00 1.89
203 204 7.042335 GTCAACACTTATAGCAGGAACAGTAT 58.958 38.462 0.00 0.00 0.00 2.12
204 205 6.395629 GTCAACACTTATAGCAGGAACAGTA 58.604 40.000 0.00 0.00 0.00 2.74
205 206 5.238583 GTCAACACTTATAGCAGGAACAGT 58.761 41.667 0.00 0.00 0.00 3.55
206 207 4.327357 CGTCAACACTTATAGCAGGAACAG 59.673 45.833 0.00 0.00 0.00 3.16
207 208 4.242475 CGTCAACACTTATAGCAGGAACA 58.758 43.478 0.00 0.00 0.00 3.18
208 209 3.062234 GCGTCAACACTTATAGCAGGAAC 59.938 47.826 0.00 0.00 0.00 3.62
209 210 3.056107 AGCGTCAACACTTATAGCAGGAA 60.056 43.478 0.00 0.00 0.00 3.36
210 211 2.496070 AGCGTCAACACTTATAGCAGGA 59.504 45.455 0.00 0.00 0.00 3.86
211 212 2.893637 AGCGTCAACACTTATAGCAGG 58.106 47.619 0.00 0.00 0.00 4.85
212 213 4.681942 GGATAGCGTCAACACTTATAGCAG 59.318 45.833 0.00 0.00 0.00 4.24
213 214 4.098807 TGGATAGCGTCAACACTTATAGCA 59.901 41.667 0.00 0.00 0.00 3.49
214 215 4.617959 TGGATAGCGTCAACACTTATAGC 58.382 43.478 0.00 0.00 0.00 2.97
215 216 6.273825 AGTTGGATAGCGTCAACACTTATAG 58.726 40.000 13.71 0.00 43.91 1.31
216 217 6.216801 AGTTGGATAGCGTCAACACTTATA 57.783 37.500 13.71 0.00 43.91 0.98
217 218 5.086104 AGTTGGATAGCGTCAACACTTAT 57.914 39.130 13.71 0.00 43.91 1.73
218 219 4.530710 AGTTGGATAGCGTCAACACTTA 57.469 40.909 13.71 0.00 43.91 2.24
219 220 3.402628 AGTTGGATAGCGTCAACACTT 57.597 42.857 13.71 0.00 43.91 3.16
220 221 4.737855 ATAGTTGGATAGCGTCAACACT 57.262 40.909 13.71 6.41 43.91 3.55
221 222 6.897259 TTTATAGTTGGATAGCGTCAACAC 57.103 37.500 13.71 0.71 43.91 3.32
222 223 8.635328 TCTATTTATAGTTGGATAGCGTCAACA 58.365 33.333 13.71 4.40 43.91 3.33
223 224 8.913656 GTCTATTTATAGTTGGATAGCGTCAAC 58.086 37.037 0.00 0.00 42.37 3.18
224 225 7.806487 CGTCTATTTATAGTTGGATAGCGTCAA 59.194 37.037 0.00 0.00 0.00 3.18
225 226 7.173735 TCGTCTATTTATAGTTGGATAGCGTCA 59.826 37.037 0.00 0.00 0.00 4.35
226 227 7.524912 TCGTCTATTTATAGTTGGATAGCGTC 58.475 38.462 0.00 0.00 0.00 5.19
227 228 7.389884 TCTCGTCTATTTATAGTTGGATAGCGT 59.610 37.037 0.00 0.00 0.00 5.07
228 229 7.749808 TCTCGTCTATTTATAGTTGGATAGCG 58.250 38.462 0.00 0.00 0.00 4.26
229 230 9.344309 GTTCTCGTCTATTTATAGTTGGATAGC 57.656 37.037 0.00 0.00 0.00 2.97
230 231 9.843334 GGTTCTCGTCTATTTATAGTTGGATAG 57.157 37.037 0.00 0.00 0.00 2.08
231 232 9.358406 TGGTTCTCGTCTATTTATAGTTGGATA 57.642 33.333 0.00 0.00 0.00 2.59
232 233 8.246430 TGGTTCTCGTCTATTTATAGTTGGAT 57.754 34.615 0.00 0.00 0.00 3.41
233 234 7.558807 TCTGGTTCTCGTCTATTTATAGTTGGA 59.441 37.037 0.00 0.00 0.00 3.53
234 235 7.713750 TCTGGTTCTCGTCTATTTATAGTTGG 58.286 38.462 0.00 0.00 0.00 3.77
235 236 9.751542 ATTCTGGTTCTCGTCTATTTATAGTTG 57.248 33.333 0.00 0.00 0.00 3.16
236 237 9.968870 GATTCTGGTTCTCGTCTATTTATAGTT 57.031 33.333 0.00 0.00 0.00 2.24
237 238 9.132923 TGATTCTGGTTCTCGTCTATTTATAGT 57.867 33.333 0.00 0.00 0.00 2.12
240 241 8.865090 AGATGATTCTGGTTCTCGTCTATTTAT 58.135 33.333 0.00 0.00 34.35 1.40
241 242 8.239038 AGATGATTCTGGTTCTCGTCTATTTA 57.761 34.615 0.00 0.00 34.35 1.40
242 243 7.069331 AGAGATGATTCTGGTTCTCGTCTATTT 59.931 37.037 0.00 0.00 39.63 1.40
243 244 6.549364 AGAGATGATTCTGGTTCTCGTCTATT 59.451 38.462 0.00 0.00 39.63 1.73
244 245 6.068010 AGAGATGATTCTGGTTCTCGTCTAT 58.932 40.000 0.00 0.00 39.63 1.98
245 246 5.441500 AGAGATGATTCTGGTTCTCGTCTA 58.558 41.667 0.00 0.00 39.63 2.59
246 247 4.277476 AGAGATGATTCTGGTTCTCGTCT 58.723 43.478 0.00 0.00 39.63 4.18
247 248 4.647424 AGAGATGATTCTGGTTCTCGTC 57.353 45.455 0.00 0.00 39.63 4.20
248 249 4.037446 GCTAGAGATGATTCTGGTTCTCGT 59.963 45.833 0.00 0.00 39.63 4.18
249 250 4.278170 AGCTAGAGATGATTCTGGTTCTCG 59.722 45.833 0.00 0.00 39.63 4.04
250 251 5.789643 AGCTAGAGATGATTCTGGTTCTC 57.210 43.478 0.00 0.00 35.84 2.87
251 252 6.558488 AAAGCTAGAGATGATTCTGGTTCT 57.442 37.500 0.00 0.00 30.30 3.01
252 253 7.437862 CACTAAAGCTAGAGATGATTCTGGTTC 59.562 40.741 0.00 0.00 30.30 3.62
253 254 7.271511 CACTAAAGCTAGAGATGATTCTGGTT 58.728 38.462 0.00 0.00 30.30 3.67
254 255 6.685116 GCACTAAAGCTAGAGATGATTCTGGT 60.685 42.308 0.00 0.00 30.30 4.00
255 256 5.695816 GCACTAAAGCTAGAGATGATTCTGG 59.304 44.000 0.00 0.00 30.30 3.86
256 257 6.514947 AGCACTAAAGCTAGAGATGATTCTG 58.485 40.000 0.00 0.00 44.50 3.02
257 258 6.729690 AGCACTAAAGCTAGAGATGATTCT 57.270 37.500 0.00 0.00 44.50 2.40
268 269 3.684788 GCACTTTGCTAGCACTAAAGCTA 59.315 43.478 19.17 0.00 41.10 3.32
269 270 2.485814 GCACTTTGCTAGCACTAAAGCT 59.514 45.455 19.17 6.87 40.96 3.74
270 271 2.856398 GCACTTTGCTAGCACTAAAGC 58.144 47.619 19.17 14.19 40.96 3.51
282 283 5.163923 GGCATTCTTTATTCAAGCACTTTGC 60.164 40.000 0.00 0.00 45.46 3.68
283 284 5.927689 TGGCATTCTTTATTCAAGCACTTTG 59.072 36.000 0.00 0.00 38.17 2.77
284 285 6.100404 TGGCATTCTTTATTCAAGCACTTT 57.900 33.333 0.00 0.00 31.70 2.66
285 286 5.726980 TGGCATTCTTTATTCAAGCACTT 57.273 34.783 0.00 0.00 31.70 3.16
286 287 5.726980 TTGGCATTCTTTATTCAAGCACT 57.273 34.783 0.00 0.00 31.70 4.40
287 288 6.783892 TTTTGGCATTCTTTATTCAAGCAC 57.216 33.333 0.00 0.00 31.70 4.40
288 289 7.660617 TCATTTTTGGCATTCTTTATTCAAGCA 59.339 29.630 0.00 0.00 31.70 3.91
289 290 8.031848 TCATTTTTGGCATTCTTTATTCAAGC 57.968 30.769 0.00 0.00 31.70 4.01
299 300 9.995003 TGTTACTAAATTCATTTTTGGCATTCT 57.005 25.926 0.00 0.00 0.00 2.40
302 303 9.941325 TGATGTTACTAAATTCATTTTTGGCAT 57.059 25.926 0.00 0.00 0.00 4.40
303 304 9.770097 TTGATGTTACTAAATTCATTTTTGGCA 57.230 25.926 0.00 0.00 0.00 4.92
329 330 9.990868 ACCATAGAACTTTTTGGTAAATAGGAT 57.009 29.630 0.00 0.00 40.62 3.24
330 331 9.457436 GACCATAGAACTTTTTGGTAAATAGGA 57.543 33.333 0.00 0.00 42.41 2.94
331 332 9.238368 TGACCATAGAACTTTTTGGTAAATAGG 57.762 33.333 0.00 0.00 42.41 2.57
336 337 9.016438 GGTAATGACCATAGAACTTTTTGGTAA 57.984 33.333 0.00 0.00 46.12 2.85
337 338 8.570068 GGTAATGACCATAGAACTTTTTGGTA 57.430 34.615 0.00 0.00 46.12 3.25
338 339 7.462571 GGTAATGACCATAGAACTTTTTGGT 57.537 36.000 0.00 0.00 46.12 3.67
353 354 1.828081 GAGGGACCCGGTAATGACC 59.172 63.158 4.40 0.00 43.03 4.02
354 355 1.325476 ACGAGGGACCCGGTAATGAC 61.325 60.000 4.40 0.00 29.95 3.06
355 356 0.615544 AACGAGGGACCCGGTAATGA 60.616 55.000 4.40 0.00 29.95 2.57
356 357 0.251073 AAACGAGGGACCCGGTAATG 59.749 55.000 4.40 0.00 29.95 1.90
357 358 0.538584 GAAACGAGGGACCCGGTAAT 59.461 55.000 4.40 0.53 29.95 1.89
358 359 0.831288 TGAAACGAGGGACCCGGTAA 60.831 55.000 4.40 0.00 29.95 2.85
359 360 1.228831 TGAAACGAGGGACCCGGTA 60.229 57.895 4.40 0.00 29.95 4.02
360 361 2.524887 TGAAACGAGGGACCCGGT 60.525 61.111 4.40 4.50 29.95 5.28
361 362 2.227089 CTCTGAAACGAGGGACCCGG 62.227 65.000 4.40 3.77 29.95 5.73
362 363 1.215647 CTCTGAAACGAGGGACCCG 59.784 63.158 4.40 0.00 34.03 5.28
363 364 0.974383 TTCTCTGAAACGAGGGACCC 59.026 55.000 0.59 0.59 0.00 4.46
364 365 1.337917 GGTTCTCTGAAACGAGGGACC 60.338 57.143 0.00 0.00 33.65 4.46
365 366 1.619332 AGGTTCTCTGAAACGAGGGAC 59.381 52.381 0.00 0.00 0.00 4.46
366 367 1.618837 CAGGTTCTCTGAAACGAGGGA 59.381 52.381 0.00 0.00 46.18 4.20
367 368 1.344763 ACAGGTTCTCTGAAACGAGGG 59.655 52.381 0.00 0.00 46.18 4.30
368 369 2.821991 ACAGGTTCTCTGAAACGAGG 57.178 50.000 0.00 0.00 46.18 4.63
369 370 4.506886 ACTACAGGTTCTCTGAAACGAG 57.493 45.455 0.00 0.00 46.18 4.18
370 371 4.931661 AACTACAGGTTCTCTGAAACGA 57.068 40.909 0.00 0.00 46.18 3.85
381 382 3.744660 CTGCCTTTCTGAACTACAGGTT 58.255 45.455 7.49 0.00 45.76 3.50
382 383 2.551071 GCTGCCTTTCTGAACTACAGGT 60.551 50.000 12.12 0.00 45.76 4.00
383 384 2.079925 GCTGCCTTTCTGAACTACAGG 58.920 52.381 12.12 7.79 45.76 4.00
384 385 2.771089 TGCTGCCTTTCTGAACTACAG 58.229 47.619 0.00 7.86 46.97 2.74
385 386 2.878406 GTTGCTGCCTTTCTGAACTACA 59.122 45.455 0.00 0.00 0.00 2.74
386 387 2.878406 TGTTGCTGCCTTTCTGAACTAC 59.122 45.455 0.00 0.00 0.00 2.73
387 388 3.207265 TGTTGCTGCCTTTCTGAACTA 57.793 42.857 0.00 0.00 0.00 2.24
388 389 2.057137 TGTTGCTGCCTTTCTGAACT 57.943 45.000 0.00 0.00 0.00 3.01
389 390 2.666619 CGATGTTGCTGCCTTTCTGAAC 60.667 50.000 0.00 0.00 0.00 3.18
390 391 1.536766 CGATGTTGCTGCCTTTCTGAA 59.463 47.619 0.00 0.00 0.00 3.02
391 392 1.159285 CGATGTTGCTGCCTTTCTGA 58.841 50.000 0.00 0.00 0.00 3.27
392 393 0.877071 ACGATGTTGCTGCCTTTCTG 59.123 50.000 0.00 0.00 0.00 3.02
393 394 2.076863 GTACGATGTTGCTGCCTTTCT 58.923 47.619 0.00 0.00 0.00 2.52
394 395 1.130561 GGTACGATGTTGCTGCCTTTC 59.869 52.381 0.00 0.00 0.00 2.62
395 396 1.165270 GGTACGATGTTGCTGCCTTT 58.835 50.000 0.00 0.00 0.00 3.11
396 397 0.324943 AGGTACGATGTTGCTGCCTT 59.675 50.000 0.00 0.00 0.00 4.35
397 398 0.391661 CAGGTACGATGTTGCTGCCT 60.392 55.000 0.00 0.00 0.00 4.75
398 399 0.391130 TCAGGTACGATGTTGCTGCC 60.391 55.000 0.00 0.00 0.00 4.85
399 400 1.438651 TTCAGGTACGATGTTGCTGC 58.561 50.000 0.00 0.00 0.00 5.25
400 401 2.805671 TGTTTCAGGTACGATGTTGCTG 59.194 45.455 0.00 0.00 0.00 4.41
401 402 3.120321 TGTTTCAGGTACGATGTTGCT 57.880 42.857 0.00 0.00 0.00 3.91
402 403 3.002862 TGTTGTTTCAGGTACGATGTTGC 59.997 43.478 0.00 0.00 0.00 4.17
403 404 4.804608 TGTTGTTTCAGGTACGATGTTG 57.195 40.909 0.00 0.00 0.00 3.33
404 405 4.274950 CCTTGTTGTTTCAGGTACGATGTT 59.725 41.667 0.00 0.00 0.00 2.71
405 406 3.813166 CCTTGTTGTTTCAGGTACGATGT 59.187 43.478 0.00 0.00 0.00 3.06
406 407 4.062293 TCCTTGTTGTTTCAGGTACGATG 58.938 43.478 0.00 0.00 0.00 3.84
407 408 4.345859 TCCTTGTTGTTTCAGGTACGAT 57.654 40.909 0.00 0.00 0.00 3.73
408 409 3.823281 TCCTTGTTGTTTCAGGTACGA 57.177 42.857 0.00 0.00 0.00 3.43
409 410 5.699458 ACTAATCCTTGTTGTTTCAGGTACG 59.301 40.000 0.00 0.00 0.00 3.67
410 411 6.708949 TGACTAATCCTTGTTGTTTCAGGTAC 59.291 38.462 0.00 0.00 0.00 3.34
411 412 6.833041 TGACTAATCCTTGTTGTTTCAGGTA 58.167 36.000 0.00 0.00 0.00 3.08
412 413 5.690865 TGACTAATCCTTGTTGTTTCAGGT 58.309 37.500 0.00 0.00 0.00 4.00
413 414 5.182001 CCTGACTAATCCTTGTTGTTTCAGG 59.818 44.000 0.00 0.00 41.15 3.86
414 415 5.335191 GCCTGACTAATCCTTGTTGTTTCAG 60.335 44.000 0.00 0.00 0.00 3.02
415 416 4.518970 GCCTGACTAATCCTTGTTGTTTCA 59.481 41.667 0.00 0.00 0.00 2.69
416 417 4.518970 TGCCTGACTAATCCTTGTTGTTTC 59.481 41.667 0.00 0.00 0.00 2.78
417 418 4.469657 TGCCTGACTAATCCTTGTTGTTT 58.530 39.130 0.00 0.00 0.00 2.83
418 419 4.098914 TGCCTGACTAATCCTTGTTGTT 57.901 40.909 0.00 0.00 0.00 2.83
419 420 3.788227 TGCCTGACTAATCCTTGTTGT 57.212 42.857 0.00 0.00 0.00 3.32
420 421 8.450578 TTTATATGCCTGACTAATCCTTGTTG 57.549 34.615 0.00 0.00 0.00 3.33
421 422 8.903820 GTTTTATATGCCTGACTAATCCTTGTT 58.096 33.333 0.00 0.00 0.00 2.83
422 423 8.275040 AGTTTTATATGCCTGACTAATCCTTGT 58.725 33.333 0.00 0.00 0.00 3.16
423 424 8.562892 CAGTTTTATATGCCTGACTAATCCTTG 58.437 37.037 0.00 0.00 0.00 3.61
424 425 8.494433 TCAGTTTTATATGCCTGACTAATCCTT 58.506 33.333 0.00 0.00 0.00 3.36
425 426 8.034313 TCAGTTTTATATGCCTGACTAATCCT 57.966 34.615 0.00 0.00 0.00 3.24
426 427 8.677148 TTCAGTTTTATATGCCTGACTAATCC 57.323 34.615 0.00 0.00 33.90 3.01
428 429 9.071276 CCATTCAGTTTTATATGCCTGACTAAT 57.929 33.333 0.00 0.00 33.90 1.73
429 430 8.052748 ACCATTCAGTTTTATATGCCTGACTAA 58.947 33.333 0.00 0.00 33.90 2.24
430 431 7.573710 ACCATTCAGTTTTATATGCCTGACTA 58.426 34.615 0.00 0.00 33.90 2.59
431 432 6.426587 ACCATTCAGTTTTATATGCCTGACT 58.573 36.000 0.00 0.00 33.90 3.41
432 433 6.699575 ACCATTCAGTTTTATATGCCTGAC 57.300 37.500 0.00 0.00 33.90 3.51
433 434 6.889177 TGAACCATTCAGTTTTATATGCCTGA 59.111 34.615 0.00 0.00 34.08 3.86
434 435 7.099266 TGAACCATTCAGTTTTATATGCCTG 57.901 36.000 0.00 0.00 34.08 4.85
435 436 7.685155 GCATGAACCATTCAGTTTTATATGCCT 60.685 37.037 0.00 0.00 43.98 4.75
436 437 6.421801 GCATGAACCATTCAGTTTTATATGCC 59.578 38.462 0.00 0.00 43.98 4.40
437 438 6.979817 TGCATGAACCATTCAGTTTTATATGC 59.020 34.615 0.00 0.00 43.98 3.14
438 439 8.810427 GTTGCATGAACCATTCAGTTTTATATG 58.190 33.333 0.00 0.00 43.98 1.78
439 440 8.530311 TGTTGCATGAACCATTCAGTTTTATAT 58.470 29.630 0.00 0.00 43.98 0.86
440 441 7.812191 GTGTTGCATGAACCATTCAGTTTTATA 59.188 33.333 0.00 0.00 43.98 0.98
441 442 6.646240 GTGTTGCATGAACCATTCAGTTTTAT 59.354 34.615 0.00 0.00 43.98 1.40
442 443 5.982516 GTGTTGCATGAACCATTCAGTTTTA 59.017 36.000 0.00 0.00 43.98 1.52
443 444 4.810491 GTGTTGCATGAACCATTCAGTTTT 59.190 37.500 0.00 0.00 43.98 2.43
444 445 4.141981 TGTGTTGCATGAACCATTCAGTTT 60.142 37.500 0.00 0.00 43.98 2.66
445 446 3.384146 TGTGTTGCATGAACCATTCAGTT 59.616 39.130 0.00 0.00 43.98 3.16
446 447 2.957680 TGTGTTGCATGAACCATTCAGT 59.042 40.909 0.00 0.00 43.98 3.41
447 448 3.253921 TCTGTGTTGCATGAACCATTCAG 59.746 43.478 0.00 0.00 43.98 3.02
448 449 3.004629 GTCTGTGTTGCATGAACCATTCA 59.995 43.478 0.00 0.00 45.01 2.57
449 450 3.568538 GTCTGTGTTGCATGAACCATTC 58.431 45.455 0.00 0.00 33.07 2.67
450 451 2.297033 GGTCTGTGTTGCATGAACCATT 59.703 45.455 0.00 0.00 33.07 3.16
451 452 1.888512 GGTCTGTGTTGCATGAACCAT 59.111 47.619 0.00 0.00 33.07 3.55
452 453 1.317613 GGTCTGTGTTGCATGAACCA 58.682 50.000 0.00 0.00 33.07 3.67
453 454 0.598065 GGGTCTGTGTTGCATGAACC 59.402 55.000 0.00 0.00 33.07 3.62
454 455 1.001378 GTGGGTCTGTGTTGCATGAAC 60.001 52.381 0.00 0.00 34.84 3.18
455 456 1.317613 GTGGGTCTGTGTTGCATGAA 58.682 50.000 0.00 0.00 0.00 2.57
456 457 0.537143 GGTGGGTCTGTGTTGCATGA 60.537 55.000 0.00 0.00 0.00 3.07
457 458 1.526575 GGGTGGGTCTGTGTTGCATG 61.527 60.000 0.00 0.00 0.00 4.06
458 459 1.228552 GGGTGGGTCTGTGTTGCAT 60.229 57.895 0.00 0.00 0.00 3.96
459 460 2.194597 GGGTGGGTCTGTGTTGCA 59.805 61.111 0.00 0.00 0.00 4.08
460 461 2.193536 GTGGGTGGGTCTGTGTTGC 61.194 63.158 0.00 0.00 0.00 4.17
461 462 1.101049 GTGTGGGTGGGTCTGTGTTG 61.101 60.000 0.00 0.00 0.00 3.33
462 463 1.226262 GTGTGGGTGGGTCTGTGTT 59.774 57.895 0.00 0.00 0.00 3.32
463 464 1.352622 ATGTGTGGGTGGGTCTGTGT 61.353 55.000 0.00 0.00 0.00 3.72
464 465 0.178992 AATGTGTGGGTGGGTCTGTG 60.179 55.000 0.00 0.00 0.00 3.66
465 466 1.073284 GTAATGTGTGGGTGGGTCTGT 59.927 52.381 0.00 0.00 0.00 3.41
466 467 1.821216 GTAATGTGTGGGTGGGTCTG 58.179 55.000 0.00 0.00 0.00 3.51
467 468 0.323629 CGTAATGTGTGGGTGGGTCT 59.676 55.000 0.00 0.00 0.00 3.85
468 469 1.303091 GCGTAATGTGTGGGTGGGTC 61.303 60.000 0.00 0.00 0.00 4.46
469 470 1.302993 GCGTAATGTGTGGGTGGGT 60.303 57.895 0.00 0.00 0.00 4.51
470 471 2.395360 CGCGTAATGTGTGGGTGGG 61.395 63.158 0.00 0.00 0.00 4.61
471 472 3.034370 GCGCGTAATGTGTGGGTGG 62.034 63.158 8.43 0.00 0.00 4.61
472 473 2.478746 GCGCGTAATGTGTGGGTG 59.521 61.111 8.43 0.00 0.00 4.61
473 474 3.115892 CGCGCGTAATGTGTGGGT 61.116 61.111 24.19 0.00 34.94 4.51
474 475 4.514569 GCGCGCGTAATGTGTGGG 62.515 66.667 32.35 0.00 39.01 4.61
475 476 4.844065 CGCGCGCGTAATGTGTGG 62.844 66.667 42.49 13.34 39.01 4.17
476 477 4.844065 CCGCGCGCGTAATGTGTG 62.844 66.667 45.51 27.46 41.53 3.82
478 479 2.819902 TTTTCCGCGCGCGTAATGTG 62.820 55.000 45.51 31.47 37.81 3.21
479 480 1.973137 ATTTTCCGCGCGCGTAATGT 61.973 50.000 45.51 27.39 37.81 2.71
480 481 0.859788 AATTTTCCGCGCGCGTAATG 60.860 50.000 45.51 32.54 37.81 1.90
481 482 0.651551 TAATTTTCCGCGCGCGTAAT 59.348 45.000 45.51 35.71 37.81 1.89
482 483 0.441533 TTAATTTTCCGCGCGCGTAA 59.558 45.000 45.51 37.39 37.81 3.18
483 484 0.441533 TTTAATTTTCCGCGCGCGTA 59.558 45.000 45.51 33.97 37.81 4.42
484 485 0.179184 ATTTAATTTTCCGCGCGCGT 60.179 45.000 45.51 31.22 37.81 6.01
485 486 0.492737 GATTTAATTTTCCGCGCGCG 59.507 50.000 43.73 43.73 39.44 6.86
486 487 1.251762 GTGATTTAATTTTCCGCGCGC 59.748 47.619 27.36 23.91 0.00 6.86
487 488 2.510874 TGTGATTTAATTTTCCGCGCG 58.489 42.857 25.67 25.67 0.00 6.86
488 489 4.894798 TTTGTGATTTAATTTTCCGCGC 57.105 36.364 0.00 0.00 0.00 6.86
489 490 8.855279 TCTATTTTTGTGATTTAATTTTCCGCG 58.145 29.630 0.00 0.00 0.00 6.46
490 491 9.952341 GTCTATTTTTGTGATTTAATTTTCCGC 57.048 29.630 0.00 0.00 0.00 5.54
498 499 9.689976 CACATGTGGTCTATTTTTGTGATTTAA 57.310 29.630 18.51 0.00 36.06 1.52
499 500 9.072375 TCACATGTGGTCTATTTTTGTGATTTA 57.928 29.630 25.16 0.00 37.62 1.40
500 501 7.867403 GTCACATGTGGTCTATTTTTGTGATTT 59.133 33.333 25.16 0.00 42.52 2.17
501 502 7.014134 TGTCACATGTGGTCTATTTTTGTGATT 59.986 33.333 25.16 0.00 42.52 2.57
502 503 6.489700 TGTCACATGTGGTCTATTTTTGTGAT 59.510 34.615 25.16 0.00 42.52 3.06
503 504 5.825151 TGTCACATGTGGTCTATTTTTGTGA 59.175 36.000 25.16 0.00 39.53 3.58
504 505 6.070897 TGTCACATGTGGTCTATTTTTGTG 57.929 37.500 25.16 0.00 35.49 3.33
505 506 6.489700 TGATGTCACATGTGGTCTATTTTTGT 59.510 34.615 25.16 0.00 0.00 2.83
506 507 6.912082 TGATGTCACATGTGGTCTATTTTTG 58.088 36.000 25.16 0.00 0.00 2.44
507 508 7.523293 TTGATGTCACATGTGGTCTATTTTT 57.477 32.000 25.16 1.24 0.00 1.94
508 509 7.523293 TTTGATGTCACATGTGGTCTATTTT 57.477 32.000 25.16 2.77 0.00 1.82
509 510 7.394077 TCATTTGATGTCACATGTGGTCTATTT 59.606 33.333 25.16 4.28 35.95 1.40
510 511 6.885918 TCATTTGATGTCACATGTGGTCTATT 59.114 34.615 25.16 11.25 35.95 1.73
511 512 6.317140 GTCATTTGATGTCACATGTGGTCTAT 59.683 38.462 25.16 13.91 35.95 1.98
512 513 5.643348 GTCATTTGATGTCACATGTGGTCTA 59.357 40.000 25.16 14.38 35.95 2.59
513 514 4.456911 GTCATTTGATGTCACATGTGGTCT 59.543 41.667 25.16 10.04 35.95 3.85
514 515 4.216042 TGTCATTTGATGTCACATGTGGTC 59.784 41.667 25.16 19.42 35.95 4.02
515 516 4.022935 GTGTCATTTGATGTCACATGTGGT 60.023 41.667 25.16 11.99 44.81 4.16
516 517 4.478699 GTGTCATTTGATGTCACATGTGG 58.521 43.478 25.16 7.43 44.81 4.17
522 523 5.437289 TCCTTTGTGTCATTTGATGTCAC 57.563 39.130 10.10 10.10 45.38 3.67
523 524 4.520111 CCTCCTTTGTGTCATTTGATGTCA 59.480 41.667 0.00 0.00 0.00 3.58
524 525 4.761739 TCCTCCTTTGTGTCATTTGATGTC 59.238 41.667 0.00 0.00 0.00 3.06
525 526 4.728772 TCCTCCTTTGTGTCATTTGATGT 58.271 39.130 0.00 0.00 0.00 3.06
526 527 5.710513 TTCCTCCTTTGTGTCATTTGATG 57.289 39.130 0.00 0.00 0.00 3.07
527 528 6.295462 CCATTTCCTCCTTTGTGTCATTTGAT 60.295 38.462 0.00 0.00 0.00 2.57
528 529 5.010922 CCATTTCCTCCTTTGTGTCATTTGA 59.989 40.000 0.00 0.00 0.00 2.69
529 530 5.221501 ACCATTTCCTCCTTTGTGTCATTTG 60.222 40.000 0.00 0.00 0.00 2.32
530 531 4.901250 ACCATTTCCTCCTTTGTGTCATTT 59.099 37.500 0.00 0.00 0.00 2.32
531 532 4.281688 CACCATTTCCTCCTTTGTGTCATT 59.718 41.667 0.00 0.00 0.00 2.57
532 533 3.828451 CACCATTTCCTCCTTTGTGTCAT 59.172 43.478 0.00 0.00 0.00 3.06
533 534 3.117701 TCACCATTTCCTCCTTTGTGTCA 60.118 43.478 0.00 0.00 0.00 3.58
534 535 3.486383 TCACCATTTCCTCCTTTGTGTC 58.514 45.455 0.00 0.00 0.00 3.67
535 536 3.593442 TCACCATTTCCTCCTTTGTGT 57.407 42.857 0.00 0.00 0.00 3.72
536 537 4.935352 TTTCACCATTTCCTCCTTTGTG 57.065 40.909 0.00 0.00 0.00 3.33
537 538 6.725834 ACATATTTCACCATTTCCTCCTTTGT 59.274 34.615 0.00 0.00 0.00 2.83
538 539 7.174107 ACATATTTCACCATTTCCTCCTTTG 57.826 36.000 0.00 0.00 0.00 2.77
565 566 8.870116 GGCAAAAGGATAATTAACCCAAGATAT 58.130 33.333 8.09 0.00 0.00 1.63
566 567 7.289084 GGGCAAAAGGATAATTAACCCAAGATA 59.711 37.037 8.09 0.00 34.82 1.98
567 568 6.099701 GGGCAAAAGGATAATTAACCCAAGAT 59.900 38.462 8.09 0.00 34.82 2.40
1109 1110 0.679505 CTGGTTCCTCGGTGTCTGAA 59.320 55.000 0.00 0.00 0.00 3.02
1514 1515 7.309177 TCCATACATTTTCAACATTACAACCG 58.691 34.615 0.00 0.00 0.00 4.44
2232 2236 2.564062 CCCATGTCAAAGTCTTGCCATT 59.436 45.455 0.00 0.00 28.75 3.16
2312 2320 0.590984 CGCGTGTGCAAACATTCACA 60.591 50.000 8.00 0.00 42.97 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.