Multiple sequence alignment - TraesCS6A01G420400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G420400 chr6A 100.000 4432 0 0 1 4432 617185325 617180894 0.000000e+00 8185
1 TraesCS6A01G420400 chr6D 91.452 2948 200 24 553 3479 472524607 472527523 0.000000e+00 4000
2 TraesCS6A01G420400 chr6D 95.041 605 26 3 3486 4086 471903056 471903660 0.000000e+00 948
3 TraesCS6A01G420400 chr6D 96.011 351 12 2 4083 4432 471903885 471904234 1.790000e-158 569
4 TraesCS6A01G420400 chr6D 83.660 153 18 6 277 429 472524129 472524274 2.150000e-28 137
5 TraesCS6A01G420400 chr6B 91.069 2777 188 32 750 3479 717537339 717540102 0.000000e+00 3699
6 TraesCS6A01G420400 chr6B 83.854 192 31 0 1213 1404 717543499 717543690 2.720000e-42 183
7 TraesCS6A01G420400 chr6B 80.087 231 44 2 1516 1745 717549034 717549263 2.120000e-38 171
8 TraesCS6A01G420400 chr1B 95.689 951 34 4 3486 4432 133514437 133515384 0.000000e+00 1522
9 TraesCS6A01G420400 chr5B 93.803 952 40 9 3486 4432 51706345 51707282 0.000000e+00 1413
10 TraesCS6A01G420400 chr5B 94.590 610 29 3 3486 4093 664997814 664997207 0.000000e+00 941
11 TraesCS6A01G420400 chr5B 93.429 350 22 1 4083 4432 664996987 664996639 6.570000e-143 518
12 TraesCS6A01G420400 chrUn 94.435 611 25 7 3486 4093 74829793 74829189 0.000000e+00 931
13 TraesCS6A01G420400 chrUn 95.429 350 14 1 4083 4432 74828962 74828615 1.390000e-154 556
14 TraesCS6A01G420400 chr5A 94.684 602 28 3 3488 4086 692326466 692327066 0.000000e+00 931
15 TraesCS6A01G420400 chr5A 94.000 350 16 5 4083 4432 692327291 692327635 3.930000e-145 525
16 TraesCS6A01G420400 chr3A 94.098 610 30 6 3486 4093 65547507 65546902 0.000000e+00 922
17 TraesCS6A01G420400 chr3A 95.739 352 11 4 4083 4432 65546682 65546333 8.320000e-157 564
18 TraesCS6A01G420400 chr7A 93.627 612 31 5 3486 4093 149421469 149420862 0.000000e+00 907
19 TraesCS6A01G420400 chr7A 95.726 351 12 2 4083 4432 149420646 149420298 2.990000e-156 562
20 TraesCS6A01G420400 chr7A 78.710 620 130 2 2617 3235 727848920 727848302 3.190000e-111 412
21 TraesCS6A01G420400 chr7A 72.660 406 95 15 1507 1910 727838857 727838466 2.170000e-23 121
22 TraesCS6A01G420400 chr3B 93.874 604 33 4 3486 4086 21406858 21407460 0.000000e+00 907
23 TraesCS6A01G420400 chr3B 94.857 350 16 2 4083 4432 21407684 21408031 3.010000e-151 545
24 TraesCS6A01G420400 chr7B 77.686 726 156 6 1075 1797 734684117 734684839 5.260000e-119 438
25 TraesCS6A01G420400 chr7B 78.778 622 132 0 2614 3235 734685845 734686466 6.860000e-113 418


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G420400 chr6A 617180894 617185325 4431 True 8185.0 8185 100.0000 1 4432 1 chr6A.!!$R1 4431
1 TraesCS6A01G420400 chr6D 472524129 472527523 3394 False 2068.5 4000 87.5560 277 3479 2 chr6D.!!$F2 3202
2 TraesCS6A01G420400 chr6D 471903056 471904234 1178 False 758.5 948 95.5260 3486 4432 2 chr6D.!!$F1 946
3 TraesCS6A01G420400 chr6B 717537339 717543690 6351 False 1941.0 3699 87.4615 750 3479 2 chr6B.!!$F2 2729
4 TraesCS6A01G420400 chr1B 133514437 133515384 947 False 1522.0 1522 95.6890 3486 4432 1 chr1B.!!$F1 946
5 TraesCS6A01G420400 chr5B 51706345 51707282 937 False 1413.0 1413 93.8030 3486 4432 1 chr5B.!!$F1 946
6 TraesCS6A01G420400 chr5B 664996639 664997814 1175 True 729.5 941 94.0095 3486 4432 2 chr5B.!!$R1 946
7 TraesCS6A01G420400 chrUn 74828615 74829793 1178 True 743.5 931 94.9320 3486 4432 2 chrUn.!!$R1 946
8 TraesCS6A01G420400 chr5A 692326466 692327635 1169 False 728.0 931 94.3420 3488 4432 2 chr5A.!!$F1 944
9 TraesCS6A01G420400 chr3A 65546333 65547507 1174 True 743.0 922 94.9185 3486 4432 2 chr3A.!!$R1 946
10 TraesCS6A01G420400 chr7A 149420298 149421469 1171 True 734.5 907 94.6765 3486 4432 2 chr7A.!!$R3 946
11 TraesCS6A01G420400 chr7A 727848302 727848920 618 True 412.0 412 78.7100 2617 3235 1 chr7A.!!$R2 618
12 TraesCS6A01G420400 chr3B 21406858 21408031 1173 False 726.0 907 94.3655 3486 4432 2 chr3B.!!$F1 946
13 TraesCS6A01G420400 chr7B 734684117 734686466 2349 False 428.0 438 78.2320 1075 3235 2 chr7B.!!$F1 2160

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
370 371 0.170561 GCATGCAAAGGCTCACAGAG 59.829 55.0 14.21 0.0 41.91 3.35 F
2039 2327 0.106819 GCCTCCATGACATGAAGCCT 60.107 55.0 17.24 0.0 0.00 4.58 F
2648 3221 0.744874 GCGGCATCCTCTACTACACA 59.255 55.0 0.00 0.0 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2075 2372 0.036483 TGAGCATGCTGCCGAAGTTA 60.036 50.000 28.27 0.0 46.52 2.24 R
3362 3938 0.321210 TGTACCCCATTGTGCTCACG 60.321 55.000 0.00 0.0 0.00 4.35 R
3981 5892 1.133513 TGTCAGTTTTGGCCCATGAGT 60.134 47.619 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.840833 GTTTATTGGTTATGGTTTCATTGGTT 57.159 30.769 0.00 0.00 34.96 3.67
26 27 9.930693 GTTTATTGGTTATGGTTTCATTGGTTA 57.069 29.630 0.00 0.00 34.96 2.85
30 31 8.887264 TTGGTTATGGTTTCATTGGTTATAGT 57.113 30.769 0.00 0.00 34.96 2.12
31 32 8.887264 TGGTTATGGTTTCATTGGTTATAGTT 57.113 30.769 0.00 0.00 34.96 2.24
32 33 8.744652 TGGTTATGGTTTCATTGGTTATAGTTG 58.255 33.333 0.00 0.00 34.96 3.16
33 34 7.704899 GGTTATGGTTTCATTGGTTATAGTTGC 59.295 37.037 0.00 0.00 34.96 4.17
34 35 8.466798 GTTATGGTTTCATTGGTTATAGTTGCT 58.533 33.333 0.00 0.00 34.96 3.91
35 36 6.509418 TGGTTTCATTGGTTATAGTTGCTC 57.491 37.500 0.00 0.00 0.00 4.26
36 37 6.245408 TGGTTTCATTGGTTATAGTTGCTCT 58.755 36.000 0.00 0.00 0.00 4.09
37 38 7.398829 TGGTTTCATTGGTTATAGTTGCTCTA 58.601 34.615 0.00 0.00 0.00 2.43
38 39 7.885922 TGGTTTCATTGGTTATAGTTGCTCTAA 59.114 33.333 0.00 0.00 31.94 2.10
39 40 8.398665 GGTTTCATTGGTTATAGTTGCTCTAAG 58.601 37.037 0.00 0.00 31.94 2.18
40 41 8.947115 GTTTCATTGGTTATAGTTGCTCTAAGT 58.053 33.333 0.00 0.00 31.94 2.24
83 84 4.451900 GGAATGATCCACGTATTCTTGGT 58.548 43.478 7.68 0.00 45.79 3.67
84 85 4.881850 GGAATGATCCACGTATTCTTGGTT 59.118 41.667 7.68 0.00 45.79 3.67
85 86 6.053005 GGAATGATCCACGTATTCTTGGTTA 58.947 40.000 7.68 0.00 45.79 2.85
86 87 6.710744 GGAATGATCCACGTATTCTTGGTTAT 59.289 38.462 7.68 0.00 45.79 1.89
87 88 7.307989 GGAATGATCCACGTATTCTTGGTTATG 60.308 40.741 7.68 0.00 45.79 1.90
88 89 5.364778 TGATCCACGTATTCTTGGTTATGG 58.635 41.667 0.00 0.00 34.98 2.74
89 90 4.829872 TCCACGTATTCTTGGTTATGGT 57.170 40.909 0.00 0.00 34.98 3.55
90 91 5.168647 TCCACGTATTCTTGGTTATGGTT 57.831 39.130 0.00 0.00 34.98 3.67
91 92 5.562635 TCCACGTATTCTTGGTTATGGTTT 58.437 37.500 0.00 0.00 34.98 3.27
92 93 5.644636 TCCACGTATTCTTGGTTATGGTTTC 59.355 40.000 0.00 0.00 34.98 2.78
93 94 5.413213 CCACGTATTCTTGGTTATGGTTTCA 59.587 40.000 0.00 0.00 0.00 2.69
94 95 6.094881 CCACGTATTCTTGGTTATGGTTTCAT 59.905 38.462 0.00 0.00 37.40 2.57
95 96 7.362574 CCACGTATTCTTGGTTATGGTTTCATT 60.363 37.037 0.00 0.00 34.96 2.57
96 97 8.026607 CACGTATTCTTGGTTATGGTTTCATTT 58.973 33.333 0.00 0.00 34.96 2.32
97 98 8.241367 ACGTATTCTTGGTTATGGTTTCATTTC 58.759 33.333 0.00 0.00 34.96 2.17
98 99 8.458843 CGTATTCTTGGTTATGGTTTCATTTCT 58.541 33.333 0.00 0.00 34.96 2.52
101 102 6.454795 TCTTGGTTATGGTTTCATTTCTTGC 58.545 36.000 0.00 0.00 34.96 4.01
102 103 5.798125 TGGTTATGGTTTCATTTCTTGCA 57.202 34.783 0.00 0.00 34.96 4.08
103 104 6.166984 TGGTTATGGTTTCATTTCTTGCAA 57.833 33.333 0.00 0.00 34.96 4.08
104 105 6.767456 TGGTTATGGTTTCATTTCTTGCAAT 58.233 32.000 0.00 0.00 34.96 3.56
105 106 6.649973 TGGTTATGGTTTCATTTCTTGCAATG 59.350 34.615 0.00 0.00 35.73 2.82
106 107 6.650390 GGTTATGGTTTCATTTCTTGCAATGT 59.350 34.615 0.00 0.00 35.86 2.71
107 108 7.173047 GGTTATGGTTTCATTTCTTGCAATGTT 59.827 33.333 0.00 0.00 35.86 2.71
108 109 8.558700 GTTATGGTTTCATTTCTTGCAATGTTT 58.441 29.630 0.00 0.00 35.86 2.83
109 110 6.360844 TGGTTTCATTTCTTGCAATGTTTG 57.639 33.333 0.00 0.00 35.86 2.93
110 111 6.111382 TGGTTTCATTTCTTGCAATGTTTGA 58.889 32.000 0.00 0.00 35.86 2.69
111 112 6.766944 TGGTTTCATTTCTTGCAATGTTTGAT 59.233 30.769 0.00 0.00 35.86 2.57
112 113 7.282675 TGGTTTCATTTCTTGCAATGTTTGATT 59.717 29.630 0.00 0.00 35.86 2.57
113 114 8.130469 GGTTTCATTTCTTGCAATGTTTGATTT 58.870 29.630 0.00 0.00 35.86 2.17
114 115 9.505995 GTTTCATTTCTTGCAATGTTTGATTTT 57.494 25.926 0.00 0.00 35.86 1.82
141 142 7.784633 TTTTCAAAGGTCAAATGAACCATTC 57.215 32.000 0.00 0.00 32.43 2.67
142 143 5.119931 TCAAAGGTCAAATGAACCATTCG 57.880 39.130 0.00 0.00 32.43 3.34
143 144 4.022416 TCAAAGGTCAAATGAACCATTCGG 60.022 41.667 0.00 0.00 32.43 4.30
144 145 3.433306 AGGTCAAATGAACCATTCGGA 57.567 42.857 0.00 0.00 32.43 4.55
145 146 3.968265 AGGTCAAATGAACCATTCGGAT 58.032 40.909 0.00 0.00 32.43 4.18
146 147 5.110814 AGGTCAAATGAACCATTCGGATA 57.889 39.130 0.00 0.00 32.43 2.59
147 148 5.694995 AGGTCAAATGAACCATTCGGATAT 58.305 37.500 0.00 0.00 32.43 1.63
148 149 5.532406 AGGTCAAATGAACCATTCGGATATG 59.468 40.000 0.00 0.00 32.43 1.78
149 150 5.299279 GGTCAAATGAACCATTCGGATATGT 59.701 40.000 0.00 0.00 32.43 2.29
150 151 6.485313 GGTCAAATGAACCATTCGGATATGTA 59.515 38.462 0.00 0.00 32.43 2.29
151 152 7.307989 GGTCAAATGAACCATTCGGATATGTAG 60.308 40.741 0.00 0.00 32.43 2.74
152 153 7.441157 GTCAAATGAACCATTCGGATATGTAGA 59.559 37.037 0.00 0.00 32.43 2.59
153 154 7.441157 TCAAATGAACCATTCGGATATGTAGAC 59.559 37.037 0.00 0.00 32.43 2.59
154 155 6.672266 ATGAACCATTCGGATATGTAGACT 57.328 37.500 0.00 0.00 35.59 3.24
155 156 6.479972 TGAACCATTCGGATATGTAGACTT 57.520 37.500 0.00 0.00 35.59 3.01
156 157 7.591421 TGAACCATTCGGATATGTAGACTTA 57.409 36.000 0.00 0.00 35.59 2.24
157 158 7.658261 TGAACCATTCGGATATGTAGACTTAG 58.342 38.462 0.00 0.00 35.59 2.18
158 159 7.504574 TGAACCATTCGGATATGTAGACTTAGA 59.495 37.037 0.00 0.00 35.59 2.10
159 160 7.834881 ACCATTCGGATATGTAGACTTAGAA 57.165 36.000 0.00 0.00 35.59 2.10
160 161 8.246430 ACCATTCGGATATGTAGACTTAGAAA 57.754 34.615 0.00 0.00 35.59 2.52
161 162 8.701895 ACCATTCGGATATGTAGACTTAGAAAA 58.298 33.333 0.00 0.00 35.59 2.29
162 163 9.712305 CCATTCGGATATGTAGACTTAGAAAAT 57.288 33.333 0.00 0.00 0.00 1.82
166 167 9.914131 TCGGATATGTAGACTTAGAAAATGATG 57.086 33.333 0.00 0.00 0.00 3.07
167 168 9.914131 CGGATATGTAGACTTAGAAAATGATGA 57.086 33.333 0.00 0.00 0.00 2.92
171 172 7.812309 TGTAGACTTAGAAAATGATGACGTG 57.188 36.000 0.00 0.00 0.00 4.49
172 173 6.811665 TGTAGACTTAGAAAATGATGACGTGG 59.188 38.462 0.00 0.00 0.00 4.94
173 174 5.178797 AGACTTAGAAAATGATGACGTGGG 58.821 41.667 0.00 0.00 0.00 4.61
174 175 5.046591 AGACTTAGAAAATGATGACGTGGGA 60.047 40.000 0.00 0.00 0.00 4.37
175 176 5.556915 ACTTAGAAAATGATGACGTGGGAA 58.443 37.500 0.00 0.00 0.00 3.97
176 177 5.643777 ACTTAGAAAATGATGACGTGGGAAG 59.356 40.000 0.00 0.00 0.00 3.46
177 178 4.286297 AGAAAATGATGACGTGGGAAGA 57.714 40.909 0.00 0.00 0.00 2.87
178 179 4.651778 AGAAAATGATGACGTGGGAAGAA 58.348 39.130 0.00 0.00 0.00 2.52
179 180 5.070001 AGAAAATGATGACGTGGGAAGAAA 58.930 37.500 0.00 0.00 0.00 2.52
180 181 4.766404 AAATGATGACGTGGGAAGAAAC 57.234 40.909 0.00 0.00 0.00 2.78
181 182 2.920724 TGATGACGTGGGAAGAAACA 57.079 45.000 0.00 0.00 0.00 2.83
182 183 3.201353 TGATGACGTGGGAAGAAACAA 57.799 42.857 0.00 0.00 0.00 2.83
183 184 3.546724 TGATGACGTGGGAAGAAACAAA 58.453 40.909 0.00 0.00 0.00 2.83
184 185 3.948473 TGATGACGTGGGAAGAAACAAAA 59.052 39.130 0.00 0.00 0.00 2.44
185 186 4.582656 TGATGACGTGGGAAGAAACAAAAT 59.417 37.500 0.00 0.00 0.00 1.82
186 187 4.993029 TGACGTGGGAAGAAACAAAATT 57.007 36.364 0.00 0.00 0.00 1.82
187 188 6.263392 TGATGACGTGGGAAGAAACAAAATTA 59.737 34.615 0.00 0.00 0.00 1.40
188 189 6.067263 TGACGTGGGAAGAAACAAAATTAG 57.933 37.500 0.00 0.00 0.00 1.73
189 190 5.823570 TGACGTGGGAAGAAACAAAATTAGA 59.176 36.000 0.00 0.00 0.00 2.10
190 191 6.488683 TGACGTGGGAAGAAACAAAATTAGAT 59.511 34.615 0.00 0.00 0.00 1.98
191 192 6.909909 ACGTGGGAAGAAACAAAATTAGATC 58.090 36.000 0.00 0.00 0.00 2.75
192 193 6.715264 ACGTGGGAAGAAACAAAATTAGATCT 59.285 34.615 0.00 0.00 0.00 2.75
193 194 7.023575 CGTGGGAAGAAACAAAATTAGATCTG 58.976 38.462 5.18 0.00 0.00 2.90
194 195 7.094805 CGTGGGAAGAAACAAAATTAGATCTGA 60.095 37.037 5.18 0.00 0.00 3.27
195 196 8.576442 GTGGGAAGAAACAAAATTAGATCTGAA 58.424 33.333 5.18 0.00 0.00 3.02
196 197 9.142014 TGGGAAGAAACAAAATTAGATCTGAAA 57.858 29.630 5.18 0.00 0.00 2.69
197 198 9.981114 GGGAAGAAACAAAATTAGATCTGAAAA 57.019 29.630 5.18 0.00 0.00 2.29
209 210 9.962783 AATTAGATCTGAAAATGATAGCAAAGC 57.037 29.630 5.18 0.00 0.00 3.51
210 211 8.743085 TTAGATCTGAAAATGATAGCAAAGCT 57.257 30.769 5.18 0.00 43.41 3.74
211 212 9.836864 TTAGATCTGAAAATGATAGCAAAGCTA 57.163 29.630 5.18 0.71 45.55 3.32
212 213 8.743085 AGATCTGAAAATGATAGCAAAGCTAA 57.257 30.769 2.52 0.00 44.62 3.09
213 214 9.352191 AGATCTGAAAATGATAGCAAAGCTAAT 57.648 29.630 2.52 0.00 44.62 1.73
216 217 9.618890 TCTGAAAATGATAGCAAAGCTAATACT 57.381 29.630 2.52 0.00 44.62 2.12
217 218 9.875675 CTGAAAATGATAGCAAAGCTAATACTC 57.124 33.333 2.52 0.00 44.62 2.59
218 219 8.840321 TGAAAATGATAGCAAAGCTAATACTCC 58.160 33.333 2.52 0.00 44.62 3.85
219 220 7.751768 AAATGATAGCAAAGCTAATACTCCC 57.248 36.000 2.52 0.00 44.62 4.30
220 221 5.887214 TGATAGCAAAGCTAATACTCCCA 57.113 39.130 2.52 0.00 44.62 4.37
221 222 5.611374 TGATAGCAAAGCTAATACTCCCAC 58.389 41.667 2.52 0.00 44.62 4.61
222 223 3.283259 AGCAAAGCTAATACTCCCACC 57.717 47.619 0.00 0.00 36.99 4.61
223 224 2.576191 AGCAAAGCTAATACTCCCACCA 59.424 45.455 0.00 0.00 36.99 4.17
224 225 2.683362 GCAAAGCTAATACTCCCACCAC 59.317 50.000 0.00 0.00 0.00 4.16
225 226 3.622455 GCAAAGCTAATACTCCCACCACT 60.622 47.826 0.00 0.00 0.00 4.00
226 227 3.914426 AAGCTAATACTCCCACCACTG 57.086 47.619 0.00 0.00 0.00 3.66
227 228 2.119495 AGCTAATACTCCCACCACTGG 58.881 52.381 0.00 0.00 37.29 4.00
228 229 2.116238 GCTAATACTCCCACCACTGGA 58.884 52.381 0.71 0.00 40.55 3.86
229 230 2.504175 GCTAATACTCCCACCACTGGAA 59.496 50.000 0.71 0.00 40.55 3.53
230 231 3.432326 GCTAATACTCCCACCACTGGAAG 60.432 52.174 0.71 0.00 40.55 3.46
231 232 0.912486 ATACTCCCACCACTGGAAGC 59.088 55.000 0.71 0.00 40.55 3.86
232 233 1.198759 TACTCCCACCACTGGAAGCC 61.199 60.000 0.71 0.00 40.55 4.35
233 234 2.449518 TCCCACCACTGGAAGCCA 60.450 61.111 0.71 0.00 40.55 4.75
234 235 2.282462 CCCACCACTGGAAGCCAC 60.282 66.667 0.71 0.00 40.55 5.01
235 236 2.669569 CCACCACTGGAAGCCACG 60.670 66.667 0.71 0.00 40.55 4.94
236 237 2.669569 CACCACTGGAAGCCACGG 60.670 66.667 0.71 0.00 37.60 4.94
237 238 2.847234 ACCACTGGAAGCCACGGA 60.847 61.111 0.71 0.00 37.60 4.69
238 239 2.429930 CCACTGGAAGCCACGGAA 59.570 61.111 0.00 0.00 37.60 4.30
239 240 1.228124 CCACTGGAAGCCACGGAAA 60.228 57.895 0.00 0.00 37.60 3.13
240 241 0.821711 CCACTGGAAGCCACGGAAAA 60.822 55.000 0.00 0.00 37.60 2.29
241 242 0.310854 CACTGGAAGCCACGGAAAAC 59.689 55.000 0.00 0.00 37.60 2.43
242 243 0.182775 ACTGGAAGCCACGGAAAACT 59.817 50.000 0.00 0.00 37.60 2.66
243 244 1.318576 CTGGAAGCCACGGAAAACTT 58.681 50.000 0.00 0.00 0.00 2.66
244 245 1.266989 CTGGAAGCCACGGAAAACTTC 59.733 52.381 0.00 0.00 38.22 3.01
256 257 3.203161 GAAAACTTCCATCTCCAACGC 57.797 47.619 0.00 0.00 0.00 4.84
257 258 2.270352 AAACTTCCATCTCCAACGCA 57.730 45.000 0.00 0.00 0.00 5.24
258 259 2.270352 AACTTCCATCTCCAACGCAA 57.730 45.000 0.00 0.00 0.00 4.85
260 261 1.347707 ACTTCCATCTCCAACGCAAGA 59.652 47.619 0.00 0.00 43.62 3.02
261 262 2.224523 ACTTCCATCTCCAACGCAAGAA 60.225 45.455 0.00 0.00 43.62 2.52
262 263 2.559698 TCCATCTCCAACGCAAGAAA 57.440 45.000 0.00 0.00 43.62 2.52
263 264 2.426522 TCCATCTCCAACGCAAGAAAG 58.573 47.619 0.00 0.00 43.62 2.62
264 265 2.038426 TCCATCTCCAACGCAAGAAAGA 59.962 45.455 0.00 0.00 43.62 2.52
265 266 2.160417 CCATCTCCAACGCAAGAAAGAC 59.840 50.000 0.00 0.00 43.62 3.01
266 267 2.613026 TCTCCAACGCAAGAAAGACA 57.387 45.000 0.00 0.00 43.62 3.41
267 268 2.210116 TCTCCAACGCAAGAAAGACAC 58.790 47.619 0.00 0.00 43.62 3.67
268 269 2.158957 TCTCCAACGCAAGAAAGACACT 60.159 45.455 0.00 0.00 43.62 3.55
269 270 2.614057 CTCCAACGCAAGAAAGACACTT 59.386 45.455 0.00 0.00 43.62 3.16
270 271 3.013921 TCCAACGCAAGAAAGACACTTT 58.986 40.909 0.00 0.00 43.62 2.66
271 272 4.193090 TCCAACGCAAGAAAGACACTTTA 58.807 39.130 0.00 0.00 43.62 1.85
272 273 4.272504 TCCAACGCAAGAAAGACACTTTAG 59.727 41.667 0.00 0.00 43.62 1.85
273 274 3.879932 ACGCAAGAAAGACACTTTAGC 57.120 42.857 0.00 0.00 43.62 3.09
274 275 3.467803 ACGCAAGAAAGACACTTTAGCT 58.532 40.909 0.00 0.00 43.62 3.32
275 276 4.628074 ACGCAAGAAAGACACTTTAGCTA 58.372 39.130 0.00 0.00 43.62 3.32
339 340 9.862371 TTTTGTTTGAACACATACATGTTACTT 57.138 25.926 2.30 0.00 42.89 2.24
345 346 8.196802 TGAACACATACATGTTACTTATGCTC 57.803 34.615 2.30 0.49 42.89 4.26
348 349 8.873215 ACACATACATGTTACTTATGCTCTAC 57.127 34.615 2.30 0.00 39.39 2.59
359 360 3.648716 TGCTCTACCTGCATGCAAA 57.351 47.368 22.88 9.26 35.31 3.68
361 362 0.737219 GCTCTACCTGCATGCAAAGG 59.263 55.000 22.88 21.93 39.65 3.11
362 363 0.737219 CTCTACCTGCATGCAAAGGC 59.263 55.000 22.88 7.29 37.03 4.35
366 367 1.214589 CCTGCATGCAAAGGCTCAC 59.785 57.895 22.88 0.00 41.91 3.51
370 371 0.170561 GCATGCAAAGGCTCACAGAG 59.829 55.000 14.21 0.00 41.91 3.35
371 372 1.817357 CATGCAAAGGCTCACAGAGA 58.183 50.000 0.00 0.00 41.91 3.10
374 375 2.224606 TGCAAAGGCTCACAGAGAAAG 58.775 47.619 0.00 0.00 41.91 2.62
386 387 8.739972 GGCTCACAGAGAAAGGAAATAATTTTA 58.260 33.333 0.00 0.00 0.00 1.52
426 469 7.581011 AAAACAAAGTGTGTGCTCTAAAAAG 57.419 32.000 0.00 0.00 40.60 2.27
466 515 8.667987 TTTTCTTCACATGTTGCGATTAATAC 57.332 30.769 0.00 0.00 0.00 1.89
469 518 7.463544 TCTTCACATGTTGCGATTAATACTTG 58.536 34.615 0.00 0.00 0.00 3.16
470 519 6.117911 TCACATGTTGCGATTAATACTTGG 57.882 37.500 0.00 0.00 0.00 3.61
471 520 5.065859 TCACATGTTGCGATTAATACTTGGG 59.934 40.000 0.00 0.00 0.00 4.12
472 521 4.947388 ACATGTTGCGATTAATACTTGGGT 59.053 37.500 0.00 0.00 0.00 4.51
473 522 5.065988 ACATGTTGCGATTAATACTTGGGTC 59.934 40.000 0.00 0.00 0.00 4.46
474 523 4.839121 TGTTGCGATTAATACTTGGGTCT 58.161 39.130 0.00 0.00 0.00 3.85
475 524 5.979993 TGTTGCGATTAATACTTGGGTCTA 58.020 37.500 0.00 0.00 0.00 2.59
476 525 5.813672 TGTTGCGATTAATACTTGGGTCTAC 59.186 40.000 0.00 0.00 0.00 2.59
477 526 5.864418 TGCGATTAATACTTGGGTCTACT 57.136 39.130 0.00 0.00 0.00 2.57
478 527 6.229936 TGCGATTAATACTTGGGTCTACTT 57.770 37.500 0.00 0.00 0.00 2.24
479 528 6.278363 TGCGATTAATACTTGGGTCTACTTC 58.722 40.000 0.00 0.00 0.00 3.01
480 529 5.695363 GCGATTAATACTTGGGTCTACTTCC 59.305 44.000 0.00 0.00 0.00 3.46
482 531 7.498443 CGATTAATACTTGGGTCTACTTCCTT 58.502 38.462 0.00 0.00 0.00 3.36
483 532 8.636213 CGATTAATACTTGGGTCTACTTCCTTA 58.364 37.037 0.00 0.00 0.00 2.69
517 754 5.301551 TGTGTTTGCTCCATGAAAATGTACT 59.698 36.000 0.00 0.00 0.00 2.73
518 755 6.488344 TGTGTTTGCTCCATGAAAATGTACTA 59.512 34.615 0.00 0.00 0.00 1.82
519 756 6.801862 GTGTTTGCTCCATGAAAATGTACTAC 59.198 38.462 0.00 0.00 0.00 2.73
520 757 6.488344 TGTTTGCTCCATGAAAATGTACTACA 59.512 34.615 0.00 0.00 0.00 2.74
521 758 7.176515 TGTTTGCTCCATGAAAATGTACTACAT 59.823 33.333 0.00 0.00 41.31 2.29
522 759 6.682423 TGCTCCATGAAAATGTACTACATG 57.318 37.500 2.31 0.00 37.97 3.21
523 760 6.179756 TGCTCCATGAAAATGTACTACATGT 58.820 36.000 2.69 2.69 37.97 3.21
524 761 6.316140 TGCTCCATGAAAATGTACTACATGTC 59.684 38.462 0.00 4.73 37.97 3.06
525 762 6.540189 GCTCCATGAAAATGTACTACATGTCT 59.460 38.462 0.00 0.00 37.97 3.41
526 763 7.710907 GCTCCATGAAAATGTACTACATGTCTA 59.289 37.037 0.00 0.00 37.97 2.59
527 764 9.770097 CTCCATGAAAATGTACTACATGTCTAT 57.230 33.333 0.00 0.00 37.97 1.98
536 773 7.843490 TGTACTACATGTCTATTTTTGGAGC 57.157 36.000 0.00 0.00 0.00 4.70
537 774 7.390823 TGTACTACATGTCTATTTTTGGAGCA 58.609 34.615 0.00 0.00 0.00 4.26
538 775 6.743575 ACTACATGTCTATTTTTGGAGCAC 57.256 37.500 0.00 0.00 0.00 4.40
539 776 6.237901 ACTACATGTCTATTTTTGGAGCACA 58.762 36.000 0.00 0.00 0.00 4.57
540 777 6.714810 ACTACATGTCTATTTTTGGAGCACAA 59.285 34.615 0.00 0.00 37.28 3.33
541 778 6.403866 ACATGTCTATTTTTGGAGCACAAA 57.596 33.333 0.00 2.86 46.82 2.83
551 788 4.782019 TTGGAGCACAAACATAATGGTC 57.218 40.909 0.00 0.00 39.56 4.02
555 792 6.186957 TGGAGCACAAACATAATGGTCTATT 58.813 36.000 0.00 0.00 40.05 1.73
630 872 2.097728 GCCGCGTTTCGAATGTCC 59.902 61.111 4.92 0.00 41.67 4.02
643 885 1.064654 GAATGTCCCATGCTCGCTTTC 59.935 52.381 0.00 0.00 0.00 2.62
646 888 1.092345 GTCCCATGCTCGCTTTCTCC 61.092 60.000 0.00 0.00 0.00 3.71
653 895 0.933796 GCTCGCTTTCTCCTACATGC 59.066 55.000 0.00 0.00 0.00 4.06
848 1091 4.500887 CCAAGTGAAGAAAGTAGTCGGTGA 60.501 45.833 0.00 0.00 0.00 4.02
909 1153 2.182030 CGACGACTTCCTGCCTCC 59.818 66.667 0.00 0.00 0.00 4.30
910 1154 2.579738 GACGACTTCCTGCCTCCC 59.420 66.667 0.00 0.00 0.00 4.30
911 1155 1.985116 GACGACTTCCTGCCTCCCT 60.985 63.158 0.00 0.00 0.00 4.20
912 1156 1.950973 GACGACTTCCTGCCTCCCTC 61.951 65.000 0.00 0.00 0.00 4.30
916 1160 0.417841 ACTTCCTGCCTCCCTCCTTA 59.582 55.000 0.00 0.00 0.00 2.69
918 1162 0.417841 TTCCTGCCTCCCTCCTTACT 59.582 55.000 0.00 0.00 0.00 2.24
934 1193 0.932211 TACTCCTCCACCTACCTCCC 59.068 60.000 0.00 0.00 0.00 4.30
958 1217 1.340248 TCTTCTCACCACACGACTTCC 59.660 52.381 0.00 0.00 0.00 3.46
962 1221 0.828022 TCACCACACGACTTCCAAGT 59.172 50.000 0.00 0.00 43.16 3.16
963 1222 1.208535 TCACCACACGACTTCCAAGTT 59.791 47.619 0.00 0.00 39.88 2.66
964 1223 2.431419 TCACCACACGACTTCCAAGTTA 59.569 45.455 0.00 0.00 39.88 2.24
1006 1265 1.013005 CGCTCTGCATCCATCGATCC 61.013 60.000 0.00 0.00 0.00 3.36
1007 1266 0.321021 GCTCTGCATCCATCGATCCT 59.679 55.000 0.00 0.00 0.00 3.24
1008 1267 1.940294 GCTCTGCATCCATCGATCCTG 60.940 57.143 0.00 0.00 0.00 3.86
1011 1270 1.343789 CTGCATCCATCGATCCTGTCT 59.656 52.381 0.00 0.00 0.00 3.41
1012 1271 1.342496 TGCATCCATCGATCCTGTCTC 59.658 52.381 0.00 0.00 0.00 3.36
1014 1273 1.067985 CATCCATCGATCCTGTCTCCG 60.068 57.143 0.00 0.00 0.00 4.63
1022 1292 0.466372 ATCCTGTCTCCGATCGAGCA 60.466 55.000 18.66 12.39 38.62 4.26
1026 1296 3.586961 TCTCCGATCGAGCAGCCG 61.587 66.667 18.66 0.00 38.62 5.52
1029 1299 2.956964 CCGATCGAGCAGCCGTTC 60.957 66.667 18.66 4.36 0.00 3.95
1031 1301 1.517257 CGATCGAGCAGCCGTTCTT 60.517 57.895 10.26 0.00 0.00 2.52
1036 1306 1.630244 CGAGCAGCCGTTCTTCTTGG 61.630 60.000 0.00 0.00 0.00 3.61
1039 1309 0.729690 GCAGCCGTTCTTCTTGGATC 59.270 55.000 0.00 0.00 0.00 3.36
1040 1310 1.002366 CAGCCGTTCTTCTTGGATCG 58.998 55.000 0.00 0.00 0.00 3.69
1041 1311 0.741221 AGCCGTTCTTCTTGGATCGC 60.741 55.000 0.00 0.00 0.00 4.58
1266 1536 1.613630 ATCACCACCTTCTCCGGCT 60.614 57.895 0.00 0.00 0.00 5.52
1274 1544 3.462333 CTTCTCCGGCTCGCTCTCG 62.462 68.421 0.00 0.00 0.00 4.04
1352 1622 0.179702 GGATGCTCATGCTCTGGTCA 59.820 55.000 0.00 0.00 40.48 4.02
1358 1628 1.742880 CATGCTCTGGTCACCCACG 60.743 63.158 0.00 0.00 35.17 4.94
1469 1739 3.162154 CCCGAGGTTAGGGGGCTC 61.162 72.222 0.00 0.00 45.14 4.70
1502 1772 1.515020 GCAGCTCACTGGATCGACT 59.485 57.895 0.00 0.00 44.63 4.18
1505 1775 0.613292 AGCTCACTGGATCGACTGGT 60.613 55.000 0.00 0.00 0.00 4.00
1544 1814 0.884259 TGGTGTTCGCCATGACACTG 60.884 55.000 13.30 0.00 32.81 3.66
1601 1871 2.743752 CGTCTTGCCATCGCTGGTG 61.744 63.158 7.21 0.00 45.10 4.17
1604 1874 0.541392 TCTTGCCATCGCTGGTGTAT 59.459 50.000 7.21 0.00 45.10 2.29
1617 1887 3.750155 TGTATGTCGCCGTCGCCA 61.750 61.111 0.00 0.00 35.26 5.69
1736 2006 2.586792 GGTGAGATGGCGCTCCTT 59.413 61.111 7.64 0.00 33.95 3.36
1784 2054 2.168521 CACCACCATCGAGGAGTACATT 59.831 50.000 0.00 0.00 41.22 2.71
1793 2063 0.907704 AGGAGTACATTGTCGGCCCA 60.908 55.000 0.00 0.00 0.00 5.36
1811 2081 1.153745 AGCGCCTGATGAAGACGAC 60.154 57.895 2.29 0.00 0.00 4.34
1910 2183 2.807107 CGGCCAGGGTAGCATGCTA 61.807 63.158 23.52 23.52 0.00 3.49
1991 2279 1.880894 CAGCATGCTTGACCACCTG 59.119 57.895 19.98 0.00 0.00 4.00
2039 2327 0.106819 GCCTCCATGACATGAAGCCT 60.107 55.000 17.24 0.00 0.00 4.58
2075 2372 1.956170 CGGCAACACGCTCTTCACT 60.956 57.895 0.00 0.00 41.91 3.41
2169 2502 2.034687 ACAAGATTGCTGCCGGCT 59.965 55.556 29.70 6.37 42.39 5.52
2172 2505 4.496336 AGATTGCTGCCGGCTCCC 62.496 66.667 29.70 15.92 42.39 4.30
2184 2517 2.357034 GCTCCCGCGAAGACAACA 60.357 61.111 8.23 0.00 0.00 3.33
2246 2648 2.267006 CAGAGCAGCATCACCGGT 59.733 61.111 0.00 0.00 0.00 5.28
2411 2861 3.353836 GACGGCCAACACGTGCAT 61.354 61.111 17.22 1.22 45.68 3.96
2460 2943 0.949105 CTACAGCACCACCAACGACC 60.949 60.000 0.00 0.00 0.00 4.79
2530 3013 4.353437 GGCGTCGTCTTCGGTGGT 62.353 66.667 0.00 0.00 37.69 4.16
2531 3014 3.103911 GCGTCGTCTTCGGTGGTG 61.104 66.667 0.00 0.00 37.69 4.17
2567 3050 4.247380 GATCTGCTGGAGCCGGGG 62.247 72.222 2.18 0.00 41.18 5.73
2615 3188 3.084039 GACAATCCAGATCCTGCAACAA 58.916 45.455 0.00 0.00 0.00 2.83
2625 3198 1.135315 CTGCAACAATTCTCCGGCG 59.865 57.895 0.00 0.00 0.00 6.46
2648 3221 0.744874 GCGGCATCCTCTACTACACA 59.255 55.000 0.00 0.00 0.00 3.72
2696 3269 3.394836 GTCCTCCTCGCCAGCCTT 61.395 66.667 0.00 0.00 0.00 4.35
2714 3287 3.071206 GGCCTGAGCTCCGACTCA 61.071 66.667 12.15 3.31 44.32 3.41
2798 3371 3.770040 CTCATGGACGTGGCCGGA 61.770 66.667 5.05 0.00 38.78 5.14
2825 3398 0.827368 GCCTCCTTCTCTGGACGATT 59.173 55.000 0.00 0.00 31.94 3.34
3312 3888 3.668447 TGTTGTTTGTGTGCCAAATGTT 58.332 36.364 0.00 0.00 44.50 2.71
3362 3938 4.202202 TGGATGAACAAAACCATGGACAAC 60.202 41.667 21.47 3.59 0.00 3.32
3384 3960 3.744214 CGTGAGCACAATGGGGTACATAT 60.744 47.826 1.20 0.00 39.40 1.78
3480 4060 9.967346 TCATATTATTGACTCTAACTACAGTGC 57.033 33.333 0.00 0.00 0.00 4.40
3481 4061 9.750125 CATATTATTGACTCTAACTACAGTGCA 57.250 33.333 0.00 0.00 0.00 4.57
3537 4117 2.383855 AGTGGTGCAAAAACTTGGCTA 58.616 42.857 0.00 0.00 0.00 3.93
3649 4286 3.252215 CCAAACAATGAAGACAAGGCGTA 59.748 43.478 0.00 0.00 0.00 4.42
3784 4663 1.607148 GGTGCGCTTAGGTTTCAAACT 59.393 47.619 9.73 0.00 0.00 2.66
3980 5891 9.494479 CTACAATTTACGTCTATAACAGAACGA 57.506 33.333 0.00 0.00 34.17 3.85
3981 5892 8.746922 ACAATTTACGTCTATAACAGAACGAA 57.253 30.769 0.00 0.00 34.17 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.840833 AACCAATGAAACCATAACCAATAAAC 57.159 30.769 0.00 0.00 0.00 2.01
4 5 9.487442 ACTATAACCAATGAAACCATAACCAAT 57.513 29.630 0.00 0.00 0.00 3.16
5 6 8.887264 ACTATAACCAATGAAACCATAACCAA 57.113 30.769 0.00 0.00 0.00 3.67
6 7 8.744652 CAACTATAACCAATGAAACCATAACCA 58.255 33.333 0.00 0.00 0.00 3.67
7 8 7.704899 GCAACTATAACCAATGAAACCATAACC 59.295 37.037 0.00 0.00 0.00 2.85
8 9 8.466798 AGCAACTATAACCAATGAAACCATAAC 58.533 33.333 0.00 0.00 0.00 1.89
9 10 8.588290 AGCAACTATAACCAATGAAACCATAA 57.412 30.769 0.00 0.00 0.00 1.90
10 11 8.052748 AGAGCAACTATAACCAATGAAACCATA 58.947 33.333 0.00 0.00 0.00 2.74
11 12 6.891908 AGAGCAACTATAACCAATGAAACCAT 59.108 34.615 0.00 0.00 0.00 3.55
12 13 6.245408 AGAGCAACTATAACCAATGAAACCA 58.755 36.000 0.00 0.00 0.00 3.67
13 14 6.759497 AGAGCAACTATAACCAATGAAACC 57.241 37.500 0.00 0.00 0.00 3.27
14 15 8.947115 ACTTAGAGCAACTATAACCAATGAAAC 58.053 33.333 0.00 0.00 0.00 2.78
45 46 9.213777 TGGATCATTCCTATACTTAGAACAACT 57.786 33.333 0.00 0.00 43.07 3.16
46 47 9.262358 GTGGATCATTCCTATACTTAGAACAAC 57.738 37.037 0.00 0.00 43.07 3.32
47 48 8.141909 CGTGGATCATTCCTATACTTAGAACAA 58.858 37.037 0.00 0.00 43.07 2.83
48 49 7.287005 ACGTGGATCATTCCTATACTTAGAACA 59.713 37.037 0.00 0.00 43.07 3.18
49 50 7.659186 ACGTGGATCATTCCTATACTTAGAAC 58.341 38.462 0.00 0.00 43.07 3.01
50 51 7.834881 ACGTGGATCATTCCTATACTTAGAA 57.165 36.000 0.00 0.00 43.07 2.10
51 52 9.529823 AATACGTGGATCATTCCTATACTTAGA 57.470 33.333 0.00 0.00 43.07 2.10
52 53 9.790389 GAATACGTGGATCATTCCTATACTTAG 57.210 37.037 0.00 0.00 43.07 2.18
53 54 9.529823 AGAATACGTGGATCATTCCTATACTTA 57.470 33.333 0.00 0.00 43.07 2.24
54 55 8.423906 AGAATACGTGGATCATTCCTATACTT 57.576 34.615 0.00 0.00 43.07 2.24
55 56 8.307483 CAAGAATACGTGGATCATTCCTATACT 58.693 37.037 0.00 0.00 43.07 2.12
56 57 7.545965 CCAAGAATACGTGGATCATTCCTATAC 59.454 40.741 0.00 0.00 45.94 1.47
57 58 7.234782 ACCAAGAATACGTGGATCATTCCTATA 59.765 37.037 0.00 0.00 45.94 1.31
58 59 6.043243 ACCAAGAATACGTGGATCATTCCTAT 59.957 38.462 0.00 0.00 45.94 2.57
59 60 5.365605 ACCAAGAATACGTGGATCATTCCTA 59.634 40.000 0.00 0.00 45.94 2.94
60 61 4.164221 ACCAAGAATACGTGGATCATTCCT 59.836 41.667 0.00 0.00 45.94 3.36
61 62 4.451900 ACCAAGAATACGTGGATCATTCC 58.548 43.478 0.00 0.00 45.94 3.01
62 63 7.307989 CCATAACCAAGAATACGTGGATCATTC 60.308 40.741 0.00 0.00 45.94 2.67
63 64 6.486657 CCATAACCAAGAATACGTGGATCATT 59.513 38.462 0.00 0.00 45.94 2.57
64 65 5.997746 CCATAACCAAGAATACGTGGATCAT 59.002 40.000 0.00 0.00 45.94 2.45
65 66 5.104693 ACCATAACCAAGAATACGTGGATCA 60.105 40.000 0.00 0.00 45.94 2.92
66 67 5.365619 ACCATAACCAAGAATACGTGGATC 58.634 41.667 0.00 0.00 45.94 3.36
67 68 5.367945 ACCATAACCAAGAATACGTGGAT 57.632 39.130 0.00 0.48 45.94 3.41
68 69 4.829872 ACCATAACCAAGAATACGTGGA 57.170 40.909 0.00 0.00 45.94 4.02
70 71 6.489127 TGAAACCATAACCAAGAATACGTG 57.511 37.500 0.00 0.00 0.00 4.49
71 72 7.696992 AATGAAACCATAACCAAGAATACGT 57.303 32.000 0.00 0.00 0.00 3.57
72 73 8.458843 AGAAATGAAACCATAACCAAGAATACG 58.541 33.333 0.00 0.00 0.00 3.06
75 76 7.603784 GCAAGAAATGAAACCATAACCAAGAAT 59.396 33.333 0.00 0.00 0.00 2.40
76 77 6.928492 GCAAGAAATGAAACCATAACCAAGAA 59.072 34.615 0.00 0.00 0.00 2.52
77 78 6.041409 TGCAAGAAATGAAACCATAACCAAGA 59.959 34.615 0.00 0.00 0.00 3.02
78 79 6.222389 TGCAAGAAATGAAACCATAACCAAG 58.778 36.000 0.00 0.00 0.00 3.61
79 80 6.166984 TGCAAGAAATGAAACCATAACCAA 57.833 33.333 0.00 0.00 0.00 3.67
80 81 5.798125 TGCAAGAAATGAAACCATAACCA 57.202 34.783 0.00 0.00 0.00 3.67
81 82 6.650390 ACATTGCAAGAAATGAAACCATAACC 59.350 34.615 4.94 0.00 39.46 2.85
82 83 7.656707 ACATTGCAAGAAATGAAACCATAAC 57.343 32.000 4.94 0.00 39.46 1.89
83 84 8.557864 CAAACATTGCAAGAAATGAAACCATAA 58.442 29.630 4.94 0.00 39.46 1.90
84 85 7.930325 TCAAACATTGCAAGAAATGAAACCATA 59.070 29.630 4.94 0.00 39.46 2.74
85 86 6.766944 TCAAACATTGCAAGAAATGAAACCAT 59.233 30.769 4.94 0.00 39.46 3.55
86 87 6.111382 TCAAACATTGCAAGAAATGAAACCA 58.889 32.000 4.94 0.00 39.46 3.67
87 88 6.601741 TCAAACATTGCAAGAAATGAAACC 57.398 33.333 4.94 0.00 39.46 3.27
88 89 9.505995 AAAATCAAACATTGCAAGAAATGAAAC 57.494 25.926 4.94 0.00 39.46 2.78
116 117 7.010923 CGAATGGTTCATTTGACCTTTGAAAAA 59.989 33.333 2.55 0.00 37.41 1.94
117 118 6.478344 CGAATGGTTCATTTGACCTTTGAAAA 59.522 34.615 2.55 0.00 37.41 2.29
118 119 5.982516 CGAATGGTTCATTTGACCTTTGAAA 59.017 36.000 2.55 0.00 37.41 2.69
119 120 5.508825 CCGAATGGTTCATTTGACCTTTGAA 60.509 40.000 8.90 0.00 37.41 2.69
120 121 4.022416 CCGAATGGTTCATTTGACCTTTGA 60.022 41.667 8.90 0.00 37.41 2.69
121 122 4.022416 TCCGAATGGTTCATTTGACCTTTG 60.022 41.667 8.90 0.00 37.41 2.77
122 123 4.148838 TCCGAATGGTTCATTTGACCTTT 58.851 39.130 8.90 0.00 37.41 3.11
123 124 3.761897 TCCGAATGGTTCATTTGACCTT 58.238 40.909 8.90 0.00 37.41 3.50
124 125 3.433306 TCCGAATGGTTCATTTGACCT 57.567 42.857 8.90 0.00 37.41 3.85
125 126 5.299279 ACATATCCGAATGGTTCATTTGACC 59.701 40.000 8.90 0.00 37.41 4.02
126 127 6.377327 ACATATCCGAATGGTTCATTTGAC 57.623 37.500 8.90 0.00 37.41 3.18
127 128 7.441157 GTCTACATATCCGAATGGTTCATTTGA 59.559 37.037 8.90 3.75 37.41 2.69
128 129 7.442364 AGTCTACATATCCGAATGGTTCATTTG 59.558 37.037 1.85 1.85 33.90 2.32
129 130 7.509546 AGTCTACATATCCGAATGGTTCATTT 58.490 34.615 0.00 0.00 33.90 2.32
130 131 7.067496 AGTCTACATATCCGAATGGTTCATT 57.933 36.000 0.00 0.00 36.72 2.57
131 132 6.672266 AGTCTACATATCCGAATGGTTCAT 57.328 37.500 0.00 0.00 36.30 2.57
132 133 6.479972 AAGTCTACATATCCGAATGGTTCA 57.520 37.500 0.00 0.00 36.30 3.18
133 134 7.883217 TCTAAGTCTACATATCCGAATGGTTC 58.117 38.462 0.00 0.00 36.30 3.62
134 135 7.834881 TCTAAGTCTACATATCCGAATGGTT 57.165 36.000 0.00 0.00 36.30 3.67
135 136 7.834881 TTCTAAGTCTACATATCCGAATGGT 57.165 36.000 0.00 0.00 36.30 3.55
136 137 9.712305 ATTTTCTAAGTCTACATATCCGAATGG 57.288 33.333 0.00 0.00 0.00 3.16
140 141 9.914131 CATCATTTTCTAAGTCTACATATCCGA 57.086 33.333 0.00 0.00 0.00 4.55
141 142 9.914131 TCATCATTTTCTAAGTCTACATATCCG 57.086 33.333 0.00 0.00 0.00 4.18
145 146 9.516314 CACGTCATCATTTTCTAAGTCTACATA 57.484 33.333 0.00 0.00 0.00 2.29
146 147 7.492669 CCACGTCATCATTTTCTAAGTCTACAT 59.507 37.037 0.00 0.00 0.00 2.29
147 148 6.811665 CCACGTCATCATTTTCTAAGTCTACA 59.188 38.462 0.00 0.00 0.00 2.74
148 149 6.255887 CCCACGTCATCATTTTCTAAGTCTAC 59.744 42.308 0.00 0.00 0.00 2.59
149 150 6.153851 TCCCACGTCATCATTTTCTAAGTCTA 59.846 38.462 0.00 0.00 0.00 2.59
150 151 5.046591 TCCCACGTCATCATTTTCTAAGTCT 60.047 40.000 0.00 0.00 0.00 3.24
151 152 5.175859 TCCCACGTCATCATTTTCTAAGTC 58.824 41.667 0.00 0.00 0.00 3.01
152 153 5.160607 TCCCACGTCATCATTTTCTAAGT 57.839 39.130 0.00 0.00 0.00 2.24
153 154 5.874810 TCTTCCCACGTCATCATTTTCTAAG 59.125 40.000 0.00 0.00 0.00 2.18
154 155 5.800296 TCTTCCCACGTCATCATTTTCTAA 58.200 37.500 0.00 0.00 0.00 2.10
155 156 5.414789 TCTTCCCACGTCATCATTTTCTA 57.585 39.130 0.00 0.00 0.00 2.10
156 157 4.286297 TCTTCCCACGTCATCATTTTCT 57.714 40.909 0.00 0.00 0.00 2.52
157 158 5.154222 GTTTCTTCCCACGTCATCATTTTC 58.846 41.667 0.00 0.00 0.00 2.29
158 159 4.582656 TGTTTCTTCCCACGTCATCATTTT 59.417 37.500 0.00 0.00 0.00 1.82
159 160 4.141287 TGTTTCTTCCCACGTCATCATTT 58.859 39.130 0.00 0.00 0.00 2.32
160 161 3.750371 TGTTTCTTCCCACGTCATCATT 58.250 40.909 0.00 0.00 0.00 2.57
161 162 3.417069 TGTTTCTTCCCACGTCATCAT 57.583 42.857 0.00 0.00 0.00 2.45
162 163 2.920724 TGTTTCTTCCCACGTCATCA 57.079 45.000 0.00 0.00 0.00 3.07
163 164 4.561735 TTTTGTTTCTTCCCACGTCATC 57.438 40.909 0.00 0.00 0.00 2.92
164 165 5.529581 AATTTTGTTTCTTCCCACGTCAT 57.470 34.783 0.00 0.00 0.00 3.06
165 166 4.993029 AATTTTGTTTCTTCCCACGTCA 57.007 36.364 0.00 0.00 0.00 4.35
166 167 6.308371 TCTAATTTTGTTTCTTCCCACGTC 57.692 37.500 0.00 0.00 0.00 4.34
167 168 6.715264 AGATCTAATTTTGTTTCTTCCCACGT 59.285 34.615 0.00 0.00 0.00 4.49
168 169 7.023575 CAGATCTAATTTTGTTTCTTCCCACG 58.976 38.462 0.00 0.00 0.00 4.94
169 170 8.110860 TCAGATCTAATTTTGTTTCTTCCCAC 57.889 34.615 0.00 0.00 0.00 4.61
170 171 8.704849 TTCAGATCTAATTTTGTTTCTTCCCA 57.295 30.769 0.00 0.00 0.00 4.37
171 172 9.981114 TTTTCAGATCTAATTTTGTTTCTTCCC 57.019 29.630 0.00 0.00 0.00 3.97
183 184 9.962783 GCTTTGCTATCATTTTCAGATCTAATT 57.037 29.630 0.00 0.00 0.00 1.40
184 185 9.352191 AGCTTTGCTATCATTTTCAGATCTAAT 57.648 29.630 0.00 0.00 36.99 1.73
185 186 8.743085 AGCTTTGCTATCATTTTCAGATCTAA 57.257 30.769 0.00 0.00 36.99 2.10
186 187 9.836864 TTAGCTTTGCTATCATTTTCAGATCTA 57.163 29.630 0.00 0.00 41.01 1.98
187 188 8.743085 TTAGCTTTGCTATCATTTTCAGATCT 57.257 30.769 0.00 0.00 41.01 2.75
190 191 9.618890 AGTATTAGCTTTGCTATCATTTTCAGA 57.381 29.630 0.00 0.00 41.01 3.27
191 192 9.875675 GAGTATTAGCTTTGCTATCATTTTCAG 57.124 33.333 0.00 0.00 41.01 3.02
192 193 8.840321 GGAGTATTAGCTTTGCTATCATTTTCA 58.160 33.333 0.00 0.00 41.01 2.69
193 194 8.293157 GGGAGTATTAGCTTTGCTATCATTTTC 58.707 37.037 0.00 0.00 41.01 2.29
194 195 7.779798 TGGGAGTATTAGCTTTGCTATCATTTT 59.220 33.333 0.00 0.00 41.01 1.82
195 196 7.229506 GTGGGAGTATTAGCTTTGCTATCATTT 59.770 37.037 0.00 0.00 41.01 2.32
196 197 6.712547 GTGGGAGTATTAGCTTTGCTATCATT 59.287 38.462 0.00 0.00 41.01 2.57
197 198 6.234177 GTGGGAGTATTAGCTTTGCTATCAT 58.766 40.000 0.00 0.00 41.01 2.45
198 199 5.454755 GGTGGGAGTATTAGCTTTGCTATCA 60.455 44.000 0.00 0.00 41.01 2.15
199 200 4.998033 GGTGGGAGTATTAGCTTTGCTATC 59.002 45.833 0.00 0.00 41.01 2.08
200 201 4.412199 TGGTGGGAGTATTAGCTTTGCTAT 59.588 41.667 0.00 0.00 41.01 2.97
201 202 3.778075 TGGTGGGAGTATTAGCTTTGCTA 59.222 43.478 0.00 0.00 40.44 3.49
202 203 2.576191 TGGTGGGAGTATTAGCTTTGCT 59.424 45.455 0.00 0.00 43.41 3.91
203 204 2.683362 GTGGTGGGAGTATTAGCTTTGC 59.317 50.000 0.00 0.00 0.00 3.68
204 205 3.941483 CAGTGGTGGGAGTATTAGCTTTG 59.059 47.826 0.00 0.00 0.00 2.77
205 206 3.054361 CCAGTGGTGGGAGTATTAGCTTT 60.054 47.826 0.00 0.00 40.67 3.51
206 207 2.505819 CCAGTGGTGGGAGTATTAGCTT 59.494 50.000 0.00 0.00 40.67 3.74
207 208 2.119495 CCAGTGGTGGGAGTATTAGCT 58.881 52.381 0.00 0.00 40.67 3.32
208 209 2.116238 TCCAGTGGTGGGAGTATTAGC 58.884 52.381 9.54 0.00 45.11 3.09
209 210 4.408182 CTTCCAGTGGTGGGAGTATTAG 57.592 50.000 9.54 0.00 44.05 1.73
216 217 2.449518 TGGCTTCCAGTGGTGGGA 60.450 61.111 9.54 0.00 45.11 4.37
217 218 2.282462 GTGGCTTCCAGTGGTGGG 60.282 66.667 9.54 1.86 45.11 4.61
218 219 2.669569 CGTGGCTTCCAGTGGTGG 60.670 66.667 9.54 4.45 46.63 4.61
219 220 2.669569 CCGTGGCTTCCAGTGGTG 60.670 66.667 9.54 4.82 32.34 4.17
220 221 1.990160 TTTCCGTGGCTTCCAGTGGT 61.990 55.000 9.54 0.00 32.34 4.16
221 222 0.821711 TTTTCCGTGGCTTCCAGTGG 60.822 55.000 1.40 1.40 32.34 4.00
222 223 0.310854 GTTTTCCGTGGCTTCCAGTG 59.689 55.000 0.00 0.00 32.34 3.66
223 224 0.182775 AGTTTTCCGTGGCTTCCAGT 59.817 50.000 0.00 0.00 32.34 4.00
224 225 1.266989 GAAGTTTTCCGTGGCTTCCAG 59.733 52.381 0.00 0.00 32.34 3.86
225 226 1.314730 GAAGTTTTCCGTGGCTTCCA 58.685 50.000 0.00 0.00 33.30 3.53
226 227 0.596577 GGAAGTTTTCCGTGGCTTCC 59.403 55.000 6.45 6.45 46.57 3.46
236 237 2.552315 TGCGTTGGAGATGGAAGTTTTC 59.448 45.455 0.00 0.00 0.00 2.29
237 238 2.582052 TGCGTTGGAGATGGAAGTTTT 58.418 42.857 0.00 0.00 0.00 2.43
238 239 2.270352 TGCGTTGGAGATGGAAGTTT 57.730 45.000 0.00 0.00 0.00 2.66
239 240 2.154462 CTTGCGTTGGAGATGGAAGTT 58.846 47.619 0.00 0.00 37.77 2.66
240 241 1.347707 TCTTGCGTTGGAGATGGAAGT 59.652 47.619 0.00 0.00 41.80 3.01
241 242 2.099141 TCTTGCGTTGGAGATGGAAG 57.901 50.000 0.00 0.00 42.29 3.46
242 243 2.559698 TTCTTGCGTTGGAGATGGAA 57.440 45.000 0.00 0.00 0.00 3.53
243 244 2.038426 TCTTTCTTGCGTTGGAGATGGA 59.962 45.455 0.00 0.00 0.00 3.41
244 245 2.160417 GTCTTTCTTGCGTTGGAGATGG 59.840 50.000 0.00 0.00 0.00 3.51
245 246 2.807967 TGTCTTTCTTGCGTTGGAGATG 59.192 45.455 0.00 0.00 0.00 2.90
246 247 2.808543 GTGTCTTTCTTGCGTTGGAGAT 59.191 45.455 0.00 0.00 0.00 2.75
247 248 2.158957 AGTGTCTTTCTTGCGTTGGAGA 60.159 45.455 0.00 0.00 0.00 3.71
248 249 2.213499 AGTGTCTTTCTTGCGTTGGAG 58.787 47.619 0.00 0.00 0.00 3.86
249 250 2.325583 AGTGTCTTTCTTGCGTTGGA 57.674 45.000 0.00 0.00 0.00 3.53
250 251 3.420839 AAAGTGTCTTTCTTGCGTTGG 57.579 42.857 0.00 0.00 0.00 3.77
251 252 3.968724 GCTAAAGTGTCTTTCTTGCGTTG 59.031 43.478 0.00 0.00 0.00 4.10
252 253 3.877508 AGCTAAAGTGTCTTTCTTGCGTT 59.122 39.130 0.00 0.00 0.00 4.84
253 254 3.467803 AGCTAAAGTGTCTTTCTTGCGT 58.532 40.909 0.00 0.00 0.00 5.24
254 255 5.786401 ATAGCTAAAGTGTCTTTCTTGCG 57.214 39.130 0.00 0.00 0.00 4.85
255 256 7.641802 GCATTATAGCTAAAGTGTCTTTCTTGC 59.358 37.037 0.00 3.31 0.00 4.01
256 257 8.887717 AGCATTATAGCTAAAGTGTCTTTCTTG 58.112 33.333 0.00 0.00 44.50 3.02
258 259 9.757227 CTAGCATTATAGCTAAAGTGTCTTTCT 57.243 33.333 0.00 0.00 45.69 2.52
259 260 9.535878 ACTAGCATTATAGCTAAAGTGTCTTTC 57.464 33.333 0.00 0.00 45.69 2.62
260 261 9.319143 CACTAGCATTATAGCTAAAGTGTCTTT 57.681 33.333 0.00 0.59 45.69 2.52
261 262 8.696374 TCACTAGCATTATAGCTAAAGTGTCTT 58.304 33.333 14.78 0.00 45.14 3.01
262 263 8.239038 TCACTAGCATTATAGCTAAAGTGTCT 57.761 34.615 14.78 2.08 45.14 3.41
263 264 8.873215 TTCACTAGCATTATAGCTAAAGTGTC 57.127 34.615 14.78 0.00 45.14 3.67
323 324 7.926555 GGTAGAGCATAAGTAACATGTATGTGT 59.073 37.037 0.00 0.00 41.61 3.72
342 343 0.737219 CCTTTGCATGCAGGTAGAGC 59.263 55.000 21.50 0.00 0.00 4.09
345 346 0.737219 GAGCCTTTGCATGCAGGTAG 59.263 55.000 21.50 17.95 41.13 3.18
348 349 1.214589 GTGAGCCTTTGCATGCAGG 59.785 57.895 21.50 20.19 41.13 4.85
359 360 5.505181 TTATTTCCTTTCTCTGTGAGCCT 57.495 39.130 0.00 0.00 0.00 4.58
401 402 7.117667 CCTTTTTAGAGCACACACTTTGTTTTT 59.882 33.333 0.00 0.00 35.67 1.94
405 406 4.440112 GCCTTTTTAGAGCACACACTTTGT 60.440 41.667 0.00 0.00 39.97 2.83
406 407 4.044426 GCCTTTTTAGAGCACACACTTTG 58.956 43.478 0.00 0.00 0.00 2.77
407 408 3.699038 TGCCTTTTTAGAGCACACACTTT 59.301 39.130 0.00 0.00 0.00 2.66
408 409 3.287222 TGCCTTTTTAGAGCACACACTT 58.713 40.909 0.00 0.00 0.00 3.16
409 410 2.930950 TGCCTTTTTAGAGCACACACT 58.069 42.857 0.00 0.00 0.00 3.55
415 416 3.295973 AGTTTGGTGCCTTTTTAGAGCA 58.704 40.909 0.00 0.00 0.00 4.26
416 417 4.051237 CAAGTTTGGTGCCTTTTTAGAGC 58.949 43.478 0.00 0.00 0.00 4.09
417 418 5.262588 ACAAGTTTGGTGCCTTTTTAGAG 57.737 39.130 0.00 0.00 0.00 2.43
418 419 5.669164 AACAAGTTTGGTGCCTTTTTAGA 57.331 34.783 0.00 0.00 0.00 2.10
419 420 6.735678 AAAACAAGTTTGGTGCCTTTTTAG 57.264 33.333 0.00 0.00 32.36 1.85
445 488 6.688385 CCAAGTATTAATCGCAACATGTGAAG 59.312 38.462 0.00 0.00 40.59 3.02
457 506 7.052142 AGGAAGTAGACCCAAGTATTAATCG 57.948 40.000 0.00 0.00 0.00 3.34
486 535 5.021033 TCATGGAGCAAACACATGTTTTT 57.979 34.783 7.26 4.12 45.07 1.94
487 536 4.669206 TCATGGAGCAAACACATGTTTT 57.331 36.364 7.26 0.00 45.07 2.43
488 537 8.330734 ACATTTTCATGGAGCAAACACATGTTT 61.331 33.333 4.13 4.13 41.91 2.83
489 538 4.669206 TTTCATGGAGCAAACACATGTT 57.331 36.364 0.00 0.00 41.91 2.71
490 539 4.669206 TTTTCATGGAGCAAACACATGT 57.331 36.364 0.00 0.00 41.91 3.21
491 540 4.992319 ACATTTTCATGGAGCAAACACATG 59.008 37.500 0.00 0.00 42.44 3.21
492 541 5.217978 ACATTTTCATGGAGCAAACACAT 57.782 34.783 0.00 0.00 34.27 3.21
493 542 4.669206 ACATTTTCATGGAGCAAACACA 57.331 36.364 0.00 0.00 34.27 3.72
494 543 5.772521 AGTACATTTTCATGGAGCAAACAC 58.227 37.500 0.00 0.00 34.27 3.32
495 544 6.488344 TGTAGTACATTTTCATGGAGCAAACA 59.512 34.615 0.00 0.00 34.27 2.83
496 545 6.908825 TGTAGTACATTTTCATGGAGCAAAC 58.091 36.000 0.00 0.00 34.27 2.93
497 546 7.176515 ACATGTAGTACATTTTCATGGAGCAAA 59.823 33.333 13.25 0.00 36.53 3.68
498 547 6.658816 ACATGTAGTACATTTTCATGGAGCAA 59.341 34.615 13.25 0.00 36.53 3.91
499 548 6.179756 ACATGTAGTACATTTTCATGGAGCA 58.820 36.000 13.25 0.00 36.53 4.26
500 549 6.540189 AGACATGTAGTACATTTTCATGGAGC 59.460 38.462 13.25 0.00 36.53 4.70
501 550 9.770097 ATAGACATGTAGTACATTTTCATGGAG 57.230 33.333 13.25 1.94 36.53 3.86
517 754 7.013750 TGTTTGTGCTCCAAAAATAGACATGTA 59.986 33.333 0.00 0.00 44.36 2.29
518 755 6.183360 TGTTTGTGCTCCAAAAATAGACATGT 60.183 34.615 0.00 0.00 44.36 3.21
519 756 6.215121 TGTTTGTGCTCCAAAAATAGACATG 58.785 36.000 4.09 0.00 44.36 3.21
520 757 6.403866 TGTTTGTGCTCCAAAAATAGACAT 57.596 33.333 4.09 0.00 44.36 3.06
521 758 5.843673 TGTTTGTGCTCCAAAAATAGACA 57.156 34.783 4.09 0.00 44.36 3.41
522 759 8.863049 CATTATGTTTGTGCTCCAAAAATAGAC 58.137 33.333 10.32 0.00 41.86 2.59
523 760 8.034215 CCATTATGTTTGTGCTCCAAAAATAGA 58.966 33.333 10.32 5.47 41.86 1.98
524 761 7.818930 ACCATTATGTTTGTGCTCCAAAAATAG 59.181 33.333 10.32 5.06 41.86 1.73
525 762 7.675062 ACCATTATGTTTGTGCTCCAAAAATA 58.325 30.769 7.71 7.71 44.36 1.40
526 763 6.532826 ACCATTATGTTTGTGCTCCAAAAAT 58.467 32.000 9.21 9.21 44.36 1.82
527 764 5.923204 ACCATTATGTTTGTGCTCCAAAAA 58.077 33.333 4.09 0.21 44.36 1.94
528 765 5.304101 AGACCATTATGTTTGTGCTCCAAAA 59.696 36.000 4.09 0.00 44.36 2.44
529 766 4.832266 AGACCATTATGTTTGTGCTCCAAA 59.168 37.500 0.00 0.00 40.71 3.28
530 767 4.406456 AGACCATTATGTTTGTGCTCCAA 58.594 39.130 0.00 0.00 0.00 3.53
531 768 4.032960 AGACCATTATGTTTGTGCTCCA 57.967 40.909 0.00 0.00 0.00 3.86
532 769 6.699575 AATAGACCATTATGTTTGTGCTCC 57.300 37.500 0.00 0.00 0.00 4.70
533 770 8.986477 AAAAATAGACCATTATGTTTGTGCTC 57.014 30.769 0.00 0.00 0.00 4.26
555 792 9.609346 TTTAATGTTACAAAAATCGGGGAAAAA 57.391 25.926 0.00 0.00 0.00 1.94
560 797 7.948278 TTGTTTAATGTTACAAAAATCGGGG 57.052 32.000 0.00 0.00 31.75 5.73
596 838 1.657751 GGCTCCCCGCAGATGAAAAC 61.658 60.000 0.00 0.00 41.67 2.43
615 857 3.556625 TGGGACATTCGAAACGCG 58.443 55.556 3.53 3.53 42.69 6.01
630 872 1.134699 TGTAGGAGAAAGCGAGCATGG 60.135 52.381 0.00 0.00 0.00 3.66
660 902 6.109156 TGTGTTGATGTACACTTATCACCT 57.891 37.500 0.00 0.00 46.67 4.00
663 905 9.936759 TCTTAATGTGTTGATGTACACTTATCA 57.063 29.630 0.00 0.00 46.67 2.15
821 1064 3.744660 ACTACTTTCTTCACTTGGCTGG 58.255 45.455 0.00 0.00 0.00 4.85
823 1066 3.555168 CCGACTACTTTCTTCACTTGGCT 60.555 47.826 0.00 0.00 0.00 4.75
848 1091 3.276846 GCCGTGCGAACAAGGTGT 61.277 61.111 0.00 0.00 46.17 4.16
871 1114 1.003003 TCGCCATGTTGTCTTGGATCA 59.997 47.619 0.00 0.00 40.11 2.92
875 1118 0.948623 TCGTCGCCATGTTGTCTTGG 60.949 55.000 0.00 0.00 40.49 3.61
876 1119 0.163788 GTCGTCGCCATGTTGTCTTG 59.836 55.000 0.00 0.00 0.00 3.02
903 1147 0.032017 GAGGAGTAAGGAGGGAGGCA 60.032 60.000 0.00 0.00 0.00 4.75
909 1153 2.668625 GTAGGTGGAGGAGTAAGGAGG 58.331 57.143 0.00 0.00 0.00 4.30
910 1154 2.245287 AGGTAGGTGGAGGAGTAAGGAG 59.755 54.545 0.00 0.00 0.00 3.69
911 1155 2.244252 GAGGTAGGTGGAGGAGTAAGGA 59.756 54.545 0.00 0.00 0.00 3.36
912 1156 2.668625 GAGGTAGGTGGAGGAGTAAGG 58.331 57.143 0.00 0.00 0.00 2.69
916 1160 1.153695 TGGGAGGTAGGTGGAGGAGT 61.154 60.000 0.00 0.00 0.00 3.85
918 1162 0.264955 GATGGGAGGTAGGTGGAGGA 59.735 60.000 0.00 0.00 0.00 3.71
934 1193 2.230025 AGTCGTGTGGTGAGAAGAGATG 59.770 50.000 0.00 0.00 0.00 2.90
962 1221 7.591426 CGCGATGTGCTATCAGCTATATAATAA 59.409 37.037 0.00 0.00 42.97 1.40
963 1222 7.078228 CGCGATGTGCTATCAGCTATATAATA 58.922 38.462 0.00 0.00 42.97 0.98
964 1223 5.917447 CGCGATGTGCTATCAGCTATATAAT 59.083 40.000 0.00 0.00 42.97 1.28
1006 1265 1.299014 GCTGCTCGATCGGAGACAG 60.299 63.158 16.41 19.31 46.23 3.51
1007 1266 2.775856 GGCTGCTCGATCGGAGACA 61.776 63.158 16.41 11.75 46.23 3.41
1008 1267 2.026879 GGCTGCTCGATCGGAGAC 59.973 66.667 16.41 7.53 46.23 3.36
1011 1270 3.411418 GAACGGCTGCTCGATCGGA 62.411 63.158 16.41 1.00 0.00 4.55
1012 1271 2.890847 AAGAACGGCTGCTCGATCGG 62.891 60.000 16.41 7.26 37.10 4.18
1014 1273 0.179124 AGAAGAACGGCTGCTCGATC 60.179 55.000 15.53 13.09 33.14 3.69
1022 1292 0.741221 GCGATCCAAGAAGAACGGCT 60.741 55.000 0.00 0.00 33.17 5.52
1026 1296 1.442769 TGCTGCGATCCAAGAAGAAC 58.557 50.000 0.00 0.00 0.00 3.01
1029 1299 1.533338 GCAATGCTGCGATCCAAGAAG 60.533 52.381 0.00 0.00 39.20 2.85
1031 1301 2.100846 GCAATGCTGCGATCCAAGA 58.899 52.632 0.00 0.00 39.20 3.02
1041 1311 2.874694 CGATCGTCCGGCAATGCTG 61.875 63.158 7.16 7.16 34.23 4.41
1244 1514 0.460987 CGGAGAAGGTGGTGATGAGC 60.461 60.000 0.00 0.00 0.00 4.26
1335 1605 0.107312 GGTGACCAGAGCATGAGCAT 60.107 55.000 0.00 0.00 45.49 3.79
1358 1628 2.997897 AGGAGGAGCACACCGACC 60.998 66.667 0.00 0.00 34.73 4.79
1422 1692 0.477204 TCCGAGATGTAGACGGGGAT 59.523 55.000 0.00 0.00 45.61 3.85
1493 1763 2.693591 GAGGAACATACCAGTCGATCCA 59.306 50.000 0.00 0.00 0.00 3.41
1502 1772 1.754803 CAGTAGGCGAGGAACATACCA 59.245 52.381 0.00 0.00 0.00 3.25
1721 1991 2.124983 GCAAGGAGCGCCATCTCA 60.125 61.111 9.88 0.00 36.29 3.27
1767 2037 2.099263 CGACAATGTACTCCTCGATGGT 59.901 50.000 0.00 0.00 37.07 3.55
1799 2069 1.816224 TGATCACCGTCGTCTTCATCA 59.184 47.619 0.00 0.00 0.00 3.07
1802 2072 1.668919 GCTTGATCACCGTCGTCTTCA 60.669 52.381 0.00 0.00 0.00 3.02
1811 2081 2.401766 GGCACCAGCTTGATCACCG 61.402 63.158 0.00 0.00 41.70 4.94
1839 2112 4.424566 GCGCTCCGGACCGTACAA 62.425 66.667 19.76 0.00 0.00 2.41
1901 2174 1.066471 TGCCCATGGATAGCATGCTA 58.934 50.000 28.72 28.72 0.00 3.49
1910 2183 2.592574 CGCGACATGCCCATGGAT 60.593 61.111 15.22 0.00 42.91 3.41
1967 2255 1.610554 GGTCAAGCATGCTGCCCATT 61.611 55.000 23.48 0.05 46.52 3.16
1991 2279 4.509737 GCGACTACGGGGTCCTGC 62.510 72.222 0.00 0.87 40.15 4.85
2047 2335 4.893601 TGTTGCCGTTGCCGTCGA 62.894 61.111 0.00 0.00 36.33 4.20
2075 2372 0.036483 TGAGCATGCTGCCGAAGTTA 60.036 50.000 28.27 0.00 46.52 2.24
2169 2502 1.179152 TCTATGTTGTCTTCGCGGGA 58.821 50.000 6.13 0.00 0.00 5.14
2172 2505 2.214244 CGTCATCTATGTTGTCTTCGCG 59.786 50.000 0.00 0.00 0.00 5.87
2181 2514 1.689273 GAGGCCCTCGTCATCTATGTT 59.311 52.381 0.00 0.00 0.00 2.71
2184 2517 0.896019 CGGAGGCCCTCGTCATCTAT 60.896 60.000 4.29 0.00 0.00 1.98
2210 2555 3.360340 GCCCGCATATCCAGCAGC 61.360 66.667 0.00 0.00 0.00 5.25
2246 2648 3.625897 CCCATGCCGATCCCGCTA 61.626 66.667 1.52 0.00 0.00 4.26
2306 2720 4.351938 TCCGTCCACTTCCACGCG 62.352 66.667 3.53 3.53 34.58 6.01
2460 2943 4.457496 ATCGTCCGGCTGCAGGTG 62.457 66.667 17.12 12.19 0.00 4.00
2523 3006 3.691342 CGGCTTCTCCACCACCGA 61.691 66.667 0.00 0.00 46.71 4.69
2625 3198 1.001158 GTAGTAGAGGATGCCGCTGAC 60.001 57.143 0.00 0.00 33.89 3.51
2648 3221 1.513158 CTGGTCGAGAATCTGCGGT 59.487 57.895 0.00 0.00 0.00 5.68
2696 3269 3.071206 GAGTCGGAGCTCAGGCCA 61.071 66.667 15.13 0.00 39.73 5.36
2714 3287 2.515071 GGAGATGAGGATGGCGGCT 61.515 63.158 11.43 0.00 0.00 5.52
2825 3398 2.415608 GGAGACGATCAGCACCGGA 61.416 63.158 9.46 0.00 0.00 5.14
3312 3888 4.362932 TGAAATGACGCTCACACAAAAA 57.637 36.364 0.00 0.00 0.00 1.94
3362 3938 0.321210 TGTACCCCATTGTGCTCACG 60.321 55.000 0.00 0.00 0.00 4.35
3384 3960 9.337396 AGATTTTGGTTTTACATCGCATCTATA 57.663 29.630 0.00 0.00 0.00 1.31
3467 4047 9.944663 CATTAAAGTTTTTGCACTGTAGTTAGA 57.055 29.630 0.00 0.00 0.00 2.10
3468 4048 8.690840 GCATTAAAGTTTTTGCACTGTAGTTAG 58.309 33.333 14.82 0.00 35.22 2.34
3479 4059 8.268738 CACAAGTTCTAGCATTAAAGTTTTTGC 58.731 33.333 12.79 12.79 35.34 3.68
3480 4060 8.755018 CCACAAGTTCTAGCATTAAAGTTTTTG 58.245 33.333 0.00 0.00 0.00 2.44
3481 4061 7.438160 GCCACAAGTTCTAGCATTAAAGTTTTT 59.562 33.333 0.00 0.00 0.00 1.94
3482 4062 6.923508 GCCACAAGTTCTAGCATTAAAGTTTT 59.076 34.615 0.00 0.00 0.00 2.43
3483 4063 6.040391 TGCCACAAGTTCTAGCATTAAAGTTT 59.960 34.615 0.00 0.00 0.00 2.66
3537 4117 2.436417 AGCACCGTATTTGCATGTCTT 58.564 42.857 0.00 0.00 42.83 3.01
3583 4220 2.512515 CTGGCAGGCCTCGTTAGC 60.513 66.667 0.00 1.88 36.94 3.09
3665 4540 6.713731 ATAAAAGACAAGGGGGTTTCTAGA 57.286 37.500 0.00 0.00 0.00 2.43
3784 4663 4.322198 GGACACGTTAATTGGAGGTCACTA 60.322 45.833 0.00 0.00 0.00 2.74
3899 5807 6.836953 ACCTTTGCAAATTTGTGTTGTTTAC 58.163 32.000 19.03 0.40 0.00 2.01
3980 5891 1.963515 GTCAGTTTTGGCCCATGAGTT 59.036 47.619 0.00 0.00 0.00 3.01
3981 5892 1.133513 TGTCAGTTTTGGCCCATGAGT 60.134 47.619 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.