Multiple sequence alignment - TraesCS6A01G419800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G419800 chr6A 100.000 2450 0 0 1 2450 616964868 616967317 0.000000e+00 4525.0
1 TraesCS6A01G419800 chr6A 91.509 106 9 0 1782 1887 616994742 616994847 1.960000e-31 147.0
2 TraesCS6A01G419800 chr6D 95.531 895 18 3 680 1552 472811073 472810179 0.000000e+00 1411.0
3 TraesCS6A01G419800 chr6D 93.538 913 26 8 1554 2450 472804476 472803581 0.000000e+00 1328.0
4 TraesCS6A01G419800 chr6D 85.252 278 16 11 405 661 472811974 472811701 1.870000e-66 263.0
5 TraesCS6A01G419800 chr6D 97.826 46 1 0 171 216 472812136 472812091 2.020000e-11 80.5
6 TraesCS6A01G419800 chr6B 94.483 870 26 1 680 1527 717930231 717929362 0.000000e+00 1321.0
7 TraesCS6A01G419800 chr6B 94.659 337 18 0 1554 1890 717922819 717922483 7.760000e-145 523.0
8 TraesCS6A01G419800 chr6B 79.026 801 134 13 685 1454 718593800 718593003 3.610000e-143 518.0
9 TraesCS6A01G419800 chr6B 84.440 527 55 16 1892 2412 717922227 717921722 6.090000e-136 494.0
10 TraesCS6A01G419800 chr6B 88.718 390 33 5 254 632 717931171 717930782 1.330000e-127 466.0
11 TraesCS6A01G419800 chr6B 88.073 109 13 0 1782 1890 717913490 717913382 1.980000e-26 130.0
12 TraesCS6A01G419800 chr6B 97.561 41 1 0 1512 1552 717929351 717929311 1.220000e-08 71.3
13 TraesCS6A01G419800 chr7D 79.823 793 131 14 690 1457 602287160 602287948 3.560000e-153 551.0
14 TraesCS6A01G419800 chr7D 77.125 800 141 14 712 1473 549834795 549835590 2.250000e-115 425.0
15 TraesCS6A01G419800 chr7A 79.823 793 131 12 690 1457 694044822 694045610 3.560000e-153 551.0
16 TraesCS6A01G419800 chrUn 78.941 793 138 13 690 1457 87052348 87051560 1.680000e-141 512.0
17 TraesCS6A01G419800 chr7B 77.267 783 144 11 704 1455 594119188 594119967 1.740000e-116 429.0
18 TraesCS6A01G419800 chr5D 77.273 792 141 17 690 1455 423534904 423534126 1.740000e-116 429.0
19 TraesCS6A01G419800 chr5B 76.641 792 143 18 690 1455 511372475 511371700 1.360000e-107 399.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G419800 chr6A 616964868 616967317 2449 False 4525.000000 4525 100.000000 1 2450 1 chr6A.!!$F1 2449
1 TraesCS6A01G419800 chr6D 472803581 472804476 895 True 1328.000000 1328 93.538000 1554 2450 1 chr6D.!!$R1 896
2 TraesCS6A01G419800 chr6D 472810179 472812136 1957 True 584.833333 1411 92.869667 171 1552 3 chr6D.!!$R2 1381
3 TraesCS6A01G419800 chr6B 717929311 717931171 1860 True 619.433333 1321 93.587333 254 1552 3 chr6B.!!$R4 1298
4 TraesCS6A01G419800 chr6B 718593003 718593800 797 True 518.000000 518 79.026000 685 1454 1 chr6B.!!$R2 769
5 TraesCS6A01G419800 chr6B 717921722 717922819 1097 True 508.500000 523 89.549500 1554 2412 2 chr6B.!!$R3 858
6 TraesCS6A01G419800 chr7D 602287160 602287948 788 False 551.000000 551 79.823000 690 1457 1 chr7D.!!$F2 767
7 TraesCS6A01G419800 chr7D 549834795 549835590 795 False 425.000000 425 77.125000 712 1473 1 chr7D.!!$F1 761
8 TraesCS6A01G419800 chr7A 694044822 694045610 788 False 551.000000 551 79.823000 690 1457 1 chr7A.!!$F1 767
9 TraesCS6A01G419800 chrUn 87051560 87052348 788 True 512.000000 512 78.941000 690 1457 1 chrUn.!!$R1 767
10 TraesCS6A01G419800 chr7B 594119188 594119967 779 False 429.000000 429 77.267000 704 1455 1 chr7B.!!$F1 751
11 TraesCS6A01G419800 chr5D 423534126 423534904 778 True 429.000000 429 77.273000 690 1455 1 chr5D.!!$R1 765
12 TraesCS6A01G419800 chr5B 511371700 511372475 775 True 399.000000 399 76.641000 690 1455 1 chr5B.!!$R1 765

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
170 171 0.029567 CGAAATCGTCTCTCTCCCCG 59.97 60.0 0.0 0.0 34.11 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1735 2471 0.648958 GAACGATAAACTTCCCCGCG 59.351 55.0 0.0 0.0 0.0 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.707791 TGGCAGATGAGCACAGTG 57.292 55.556 0.00 0.00 35.83 3.66
18 19 1.002990 TGGCAGATGAGCACAGTGG 60.003 57.895 1.84 0.00 35.83 4.00
19 20 1.297689 GGCAGATGAGCACAGTGGA 59.702 57.895 1.84 0.00 35.83 4.02
20 21 0.743701 GGCAGATGAGCACAGTGGAG 60.744 60.000 1.84 0.00 35.83 3.86
21 22 0.743701 GCAGATGAGCACAGTGGAGG 60.744 60.000 1.84 0.00 0.00 4.30
22 23 0.900421 CAGATGAGCACAGTGGAGGA 59.100 55.000 1.84 0.00 0.00 3.71
23 24 1.134759 CAGATGAGCACAGTGGAGGAG 60.135 57.143 1.84 0.00 0.00 3.69
24 25 0.177604 GATGAGCACAGTGGAGGAGG 59.822 60.000 1.84 0.00 0.00 4.30
25 26 0.546267 ATGAGCACAGTGGAGGAGGT 60.546 55.000 1.84 0.00 0.00 3.85
26 27 1.294780 GAGCACAGTGGAGGAGGTG 59.705 63.158 1.84 0.00 0.00 4.00
27 28 2.177594 GAGCACAGTGGAGGAGGTGG 62.178 65.000 1.84 0.00 0.00 4.61
28 29 2.520536 GCACAGTGGAGGAGGTGGT 61.521 63.158 1.84 0.00 0.00 4.16
29 30 1.372683 CACAGTGGAGGAGGTGGTG 59.627 63.158 0.00 0.00 0.00 4.17
30 31 1.074471 ACAGTGGAGGAGGTGGTGT 60.074 57.895 0.00 0.00 0.00 4.16
31 32 1.122019 ACAGTGGAGGAGGTGGTGTC 61.122 60.000 0.00 0.00 0.00 3.67
32 33 1.536662 AGTGGAGGAGGTGGTGTCC 60.537 63.158 0.00 0.00 0.00 4.02
33 34 2.603473 TGGAGGAGGTGGTGTCCG 60.603 66.667 0.00 0.00 39.30 4.79
34 35 4.083862 GGAGGAGGTGGTGTCCGC 62.084 72.222 0.00 0.00 39.30 5.54
35 36 2.997897 GAGGAGGTGGTGTCCGCT 60.998 66.667 0.00 0.00 39.30 5.52
36 37 2.526873 AGGAGGTGGTGTCCGCTT 60.527 61.111 0.00 0.00 39.30 4.68
37 38 2.358737 GGAGGTGGTGTCCGCTTG 60.359 66.667 0.00 0.00 33.98 4.01
38 39 2.741092 GAGGTGGTGTCCGCTTGA 59.259 61.111 0.00 0.00 33.98 3.02
39 40 1.296715 GAGGTGGTGTCCGCTTGAT 59.703 57.895 0.00 0.00 33.98 2.57
40 41 1.003355 AGGTGGTGTCCGCTTGATG 60.003 57.895 0.00 0.00 33.98 3.07
41 42 2.690778 GGTGGTGTCCGCTTGATGC 61.691 63.158 0.00 0.00 33.98 3.91
59 60 2.506472 GGGGACGGATGAGAAGCC 59.494 66.667 0.00 0.00 0.00 4.35
60 61 2.367202 GGGGACGGATGAGAAGCCA 61.367 63.158 0.00 0.00 0.00 4.75
61 62 1.700042 GGGGACGGATGAGAAGCCAT 61.700 60.000 0.00 0.00 0.00 4.40
62 63 0.533755 GGGACGGATGAGAAGCCATG 60.534 60.000 0.00 0.00 0.00 3.66
63 64 0.533755 GGACGGATGAGAAGCCATGG 60.534 60.000 7.63 7.63 0.00 3.66
64 65 0.179000 GACGGATGAGAAGCCATGGT 59.821 55.000 14.67 0.00 0.00 3.55
65 66 0.107508 ACGGATGAGAAGCCATGGTG 60.108 55.000 14.67 0.00 0.00 4.17
66 67 0.816825 CGGATGAGAAGCCATGGTGG 60.817 60.000 14.67 0.00 41.55 4.61
67 68 0.257039 GGATGAGAAGCCATGGTGGT 59.743 55.000 14.67 0.00 40.46 4.16
68 69 1.386533 GATGAGAAGCCATGGTGGTG 58.613 55.000 14.67 0.00 40.46 4.17
69 70 0.994247 ATGAGAAGCCATGGTGGTGA 59.006 50.000 14.67 0.00 40.46 4.02
70 71 0.994247 TGAGAAGCCATGGTGGTGAT 59.006 50.000 14.67 0.00 40.46 3.06
71 72 1.340308 TGAGAAGCCATGGTGGTGATG 60.340 52.381 14.67 0.00 40.46 3.07
72 73 0.033796 AGAAGCCATGGTGGTGATGG 60.034 55.000 14.67 0.00 43.01 3.51
75 76 3.607163 CCATGGTGGTGATGGCAC 58.393 61.111 2.57 0.00 44.39 5.01
76 77 2.409055 CCATGGTGGTGATGGCACG 61.409 63.158 2.57 0.00 46.09 5.34
77 78 1.377072 CATGGTGGTGATGGCACGA 60.377 57.895 0.00 0.00 46.09 4.35
78 79 1.078214 ATGGTGGTGATGGCACGAG 60.078 57.895 0.00 0.00 46.09 4.18
79 80 3.127533 GGTGGTGATGGCACGAGC 61.128 66.667 0.00 0.00 46.09 5.03
80 81 3.490759 GTGGTGATGGCACGAGCG 61.491 66.667 0.00 0.00 46.09 5.03
92 93 3.777925 CGAGCGCCGTTCCTGTTG 61.778 66.667 2.29 0.00 0.00 3.33
93 94 4.090057 GAGCGCCGTTCCTGTTGC 62.090 66.667 2.29 0.00 0.00 4.17
94 95 4.626081 AGCGCCGTTCCTGTTGCT 62.626 61.111 2.29 0.00 0.00 3.91
95 96 2.740826 GCGCCGTTCCTGTTGCTA 60.741 61.111 0.00 0.00 0.00 3.49
96 97 2.106683 GCGCCGTTCCTGTTGCTAT 61.107 57.895 0.00 0.00 0.00 2.97
97 98 2.006772 CGCCGTTCCTGTTGCTATC 58.993 57.895 0.00 0.00 0.00 2.08
98 99 1.752501 CGCCGTTCCTGTTGCTATCG 61.753 60.000 0.00 0.00 0.00 2.92
99 100 2.006772 CCGTTCCTGTTGCTATCGC 58.993 57.895 0.00 0.00 0.00 4.58
100 101 1.429148 CCGTTCCTGTTGCTATCGCC 61.429 60.000 0.00 0.00 34.43 5.54
101 102 1.752501 CGTTCCTGTTGCTATCGCCG 61.753 60.000 0.00 0.00 34.43 6.46
102 103 1.153449 TTCCTGTTGCTATCGCCGG 60.153 57.895 0.00 0.00 34.43 6.13
103 104 2.587322 TTCCTGTTGCTATCGCCGGG 62.587 60.000 2.18 0.00 34.43 5.73
104 105 2.186903 CTGTTGCTATCGCCGGGT 59.813 61.111 2.18 0.00 34.43 5.28
105 106 2.125310 TGTTGCTATCGCCGGGTG 60.125 61.111 2.18 0.00 34.43 4.61
106 107 2.125269 GTTGCTATCGCCGGGTGT 60.125 61.111 2.18 0.00 34.43 4.16
107 108 1.142314 GTTGCTATCGCCGGGTGTA 59.858 57.895 2.18 0.00 34.43 2.90
108 109 0.460635 GTTGCTATCGCCGGGTGTAA 60.461 55.000 2.18 0.00 34.43 2.41
109 110 0.249676 TTGCTATCGCCGGGTGTAAA 59.750 50.000 2.18 0.00 34.43 2.01
110 111 0.466543 TGCTATCGCCGGGTGTAAAT 59.533 50.000 2.18 0.00 34.43 1.40
111 112 1.134340 TGCTATCGCCGGGTGTAAATT 60.134 47.619 2.18 0.00 34.43 1.82
112 113 1.263217 GCTATCGCCGGGTGTAAATTG 59.737 52.381 2.18 0.00 0.00 2.32
113 114 2.557317 CTATCGCCGGGTGTAAATTGT 58.443 47.619 2.18 0.00 0.00 2.71
114 115 1.828979 ATCGCCGGGTGTAAATTGTT 58.171 45.000 2.18 0.00 0.00 2.83
115 116 0.875728 TCGCCGGGTGTAAATTGTTG 59.124 50.000 2.18 0.00 0.00 3.33
116 117 0.731174 CGCCGGGTGTAAATTGTTGC 60.731 55.000 2.18 0.00 0.00 4.17
117 118 0.601057 GCCGGGTGTAAATTGTTGCT 59.399 50.000 2.18 0.00 0.00 3.91
118 119 1.668628 GCCGGGTGTAAATTGTTGCTG 60.669 52.381 2.18 0.00 0.00 4.41
119 120 1.067915 CCGGGTGTAAATTGTTGCTGG 60.068 52.381 0.00 0.00 0.00 4.85
120 121 1.067915 CGGGTGTAAATTGTTGCTGGG 60.068 52.381 0.00 0.00 0.00 4.45
121 122 2.243810 GGGTGTAAATTGTTGCTGGGA 58.756 47.619 0.00 0.00 0.00 4.37
122 123 2.630580 GGGTGTAAATTGTTGCTGGGAA 59.369 45.455 0.00 0.00 0.00 3.97
123 124 3.260632 GGGTGTAAATTGTTGCTGGGAAT 59.739 43.478 0.00 0.00 0.00 3.01
124 125 4.244862 GGTGTAAATTGTTGCTGGGAATG 58.755 43.478 0.00 0.00 0.00 2.67
125 126 4.244862 GTGTAAATTGTTGCTGGGAATGG 58.755 43.478 0.00 0.00 0.00 3.16
126 127 4.021544 GTGTAAATTGTTGCTGGGAATGGA 60.022 41.667 0.00 0.00 0.00 3.41
127 128 4.776837 TGTAAATTGTTGCTGGGAATGGAT 59.223 37.500 0.00 0.00 0.00 3.41
128 129 5.954752 TGTAAATTGTTGCTGGGAATGGATA 59.045 36.000 0.00 0.00 0.00 2.59
129 130 6.438741 TGTAAATTGTTGCTGGGAATGGATAA 59.561 34.615 0.00 0.00 0.00 1.75
130 131 6.371595 AAATTGTTGCTGGGAATGGATAAA 57.628 33.333 0.00 0.00 0.00 1.40
131 132 6.371595 AATTGTTGCTGGGAATGGATAAAA 57.628 33.333 0.00 0.00 0.00 1.52
132 133 5.404466 TTGTTGCTGGGAATGGATAAAAG 57.596 39.130 0.00 0.00 0.00 2.27
133 134 3.195396 TGTTGCTGGGAATGGATAAAAGC 59.805 43.478 0.00 0.00 0.00 3.51
134 135 2.387757 TGCTGGGAATGGATAAAAGCC 58.612 47.619 0.00 0.00 0.00 4.35
135 136 1.338020 GCTGGGAATGGATAAAAGCCG 59.662 52.381 0.00 0.00 0.00 5.52
136 137 1.956477 CTGGGAATGGATAAAAGCCGG 59.044 52.381 0.00 0.00 0.00 6.13
137 138 1.328279 GGGAATGGATAAAAGCCGGG 58.672 55.000 2.18 0.00 0.00 5.73
138 139 1.328279 GGAATGGATAAAAGCCGGGG 58.672 55.000 2.18 0.00 0.00 5.73
139 140 1.328279 GAATGGATAAAAGCCGGGGG 58.672 55.000 2.18 0.00 0.00 5.40
153 154 2.036572 GGGGGCATTTGGGAACGA 59.963 61.111 0.00 0.00 0.00 3.85
154 155 1.608046 GGGGGCATTTGGGAACGAA 60.608 57.895 0.00 0.00 38.33 3.85
155 156 1.188871 GGGGGCATTTGGGAACGAAA 61.189 55.000 0.00 0.00 37.25 3.46
156 157 0.901827 GGGGCATTTGGGAACGAAAT 59.098 50.000 0.00 0.00 37.25 2.17
157 158 1.134818 GGGGCATTTGGGAACGAAATC 60.135 52.381 0.00 0.00 37.25 2.17
158 159 1.469079 GGGCATTTGGGAACGAAATCG 60.469 52.381 0.48 0.48 46.33 3.34
169 170 3.949031 CGAAATCGTCTCTCTCCCC 57.051 57.895 0.00 0.00 34.11 4.81
170 171 0.029567 CGAAATCGTCTCTCTCCCCG 59.970 60.000 0.00 0.00 34.11 5.73
171 172 0.249114 GAAATCGTCTCTCTCCCCGC 60.249 60.000 0.00 0.00 0.00 6.13
172 173 1.677637 AAATCGTCTCTCTCCCCGCC 61.678 60.000 0.00 0.00 0.00 6.13
173 174 2.856039 AATCGTCTCTCTCCCCGCCA 62.856 60.000 0.00 0.00 0.00 5.69
174 175 3.522731 CGTCTCTCTCCCCGCCAG 61.523 72.222 0.00 0.00 0.00 4.85
216 217 1.228657 GGCACGCGAAGAAAAGAGGT 61.229 55.000 15.93 0.00 0.00 3.85
217 218 0.164002 GCACGCGAAGAAAAGAGGTC 59.836 55.000 15.93 0.00 0.00 3.85
218 219 1.497991 CACGCGAAGAAAAGAGGTCA 58.502 50.000 15.93 0.00 0.00 4.02
219 220 1.192534 CACGCGAAGAAAAGAGGTCAC 59.807 52.381 15.93 0.00 0.00 3.67
220 221 0.435008 CGCGAAGAAAAGAGGTCACG 59.565 55.000 0.00 0.00 0.00 4.35
221 222 0.164002 GCGAAGAAAAGAGGTCACGC 59.836 55.000 0.00 0.00 36.51 5.34
222 223 0.790814 CGAAGAAAAGAGGTCACGCC 59.209 55.000 0.00 0.00 37.58 5.68
223 224 1.157585 GAAGAAAAGAGGTCACGCCC 58.842 55.000 0.00 0.00 38.26 6.13
224 225 0.765510 AAGAAAAGAGGTCACGCCCT 59.234 50.000 0.00 0.00 38.26 5.19
229 230 2.501610 GAGGTCACGCCCTCCATC 59.498 66.667 5.32 0.00 44.49 3.51
230 231 3.432051 GAGGTCACGCCCTCCATCG 62.432 68.421 5.32 0.00 44.49 3.84
232 233 4.148825 GTCACGCCCTCCATCGCT 62.149 66.667 0.00 0.00 0.00 4.93
233 234 3.838271 TCACGCCCTCCATCGCTC 61.838 66.667 0.00 0.00 0.00 5.03
234 235 4.899239 CACGCCCTCCATCGCTCC 62.899 72.222 0.00 0.00 0.00 4.70
237 238 4.593864 GCCCTCCATCGCTCCGAC 62.594 72.222 0.00 0.00 39.18 4.79
238 239 3.917760 CCCTCCATCGCTCCGACC 61.918 72.222 0.00 0.00 39.18 4.79
239 240 3.147595 CCTCCATCGCTCCGACCA 61.148 66.667 0.00 0.00 39.18 4.02
240 241 2.721167 CCTCCATCGCTCCGACCAA 61.721 63.158 0.00 0.00 39.18 3.67
241 242 1.443407 CTCCATCGCTCCGACCAAT 59.557 57.895 0.00 0.00 39.18 3.16
242 243 0.598680 CTCCATCGCTCCGACCAATC 60.599 60.000 0.00 0.00 39.18 2.67
263 264 0.034896 GTTCCCATCTGGTGACGTGT 59.965 55.000 0.00 0.00 34.77 4.49
304 305 2.434185 GTGCGGGCAATCAGACGA 60.434 61.111 0.00 0.00 0.00 4.20
322 323 3.688330 CTGTCGTTGCGTCGCGTT 61.688 61.111 13.38 0.00 0.00 4.84
342 343 1.851304 GGAATCATTCCCAGCAACCA 58.149 50.000 4.89 0.00 44.30 3.67
444 452 7.918536 TGACTGAATCTACGAAGTTACTACT 57.081 36.000 0.00 0.00 37.78 2.57
445 453 9.440773 TTGACTGAATCTACGAAGTTACTACTA 57.559 33.333 0.00 0.00 37.78 1.82
446 454 9.096160 TGACTGAATCTACGAAGTTACTACTAG 57.904 37.037 0.00 0.00 37.78 2.57
674 779 6.360681 CGTGAGAATTTTTGGATCAACAACTC 59.639 38.462 0.00 0.00 0.00 3.01
675 780 7.428826 GTGAGAATTTTTGGATCAACAACTCT 58.571 34.615 0.00 0.00 0.00 3.24
676 781 8.567948 GTGAGAATTTTTGGATCAACAACTCTA 58.432 33.333 0.00 0.00 0.00 2.43
677 782 9.300681 TGAGAATTTTTGGATCAACAACTCTAT 57.699 29.630 0.00 0.00 0.00 1.98
903 1581 1.406180 TGTGAAGTTTGAGGTCGACGA 59.594 47.619 9.92 0.00 0.00 4.20
990 1690 1.272369 TGGCCCAATGCTGTCATACAA 60.272 47.619 0.00 0.00 40.92 2.41
992 1692 2.417243 GGCCCAATGCTGTCATACAAAC 60.417 50.000 0.00 0.00 40.92 2.93
993 1693 2.731968 GCCCAATGCTGTCATACAAACG 60.732 50.000 0.00 0.00 36.87 3.60
1175 1881 2.288886 GGCTCGGAGACTTGTTTGTAGT 60.289 50.000 9.69 0.00 0.00 2.73
1552 2288 2.774687 GGTCATAACCCACGTGTCTTT 58.225 47.619 15.65 6.78 39.93 2.52
1556 2292 3.998341 TCATAACCCACGTGTCTTTAAGC 59.002 43.478 15.65 0.00 0.00 3.09
1587 2323 4.577677 TGCCTTTGCGTGGGAGCA 62.578 61.111 0.00 0.00 46.54 4.26
1624 2360 0.940126 CTGTTATCCACAGCGATGGC 59.060 55.000 5.32 0.00 46.70 4.40
1664 2400 0.457443 CTACTCGATGCACTCAGCCA 59.543 55.000 0.00 0.00 44.83 4.75
1735 2471 0.326264 ATGCACTGTTCTGGTCTCCC 59.674 55.000 0.00 0.00 0.00 4.30
1821 2561 2.440627 TGGATGATCTTGAGACCATGGG 59.559 50.000 18.09 0.00 25.66 4.00
2027 3023 4.455877 AGATTTACAAGGCGTCAAAGGAAG 59.544 41.667 0.00 0.00 0.00 3.46
2034 3030 2.618709 AGGCGTCAAAGGAAGAGTTTTG 59.381 45.455 0.00 0.00 36.00 2.44
2076 3076 5.180117 CCTCCATCGATCATTGGTTATTGTC 59.820 44.000 9.98 0.00 34.48 3.18
2168 3169 1.181098 CCCAAGGCCACCTTCACTTG 61.181 60.000 5.01 0.00 42.67 3.16
2177 3178 3.007614 GCCACCTTCACTTGTTACTCCTA 59.992 47.826 0.00 0.00 0.00 2.94
2178 3179 4.504340 GCCACCTTCACTTGTTACTCCTAA 60.504 45.833 0.00 0.00 0.00 2.69
2256 3258 4.125703 GGAAGTAGCTGATTCAGACCATG 58.874 47.826 17.87 0.00 32.44 3.66
2259 3261 2.730934 AGCTGATTCAGACCATGCAT 57.269 45.000 17.87 0.00 32.44 3.96
2260 3262 2.298610 AGCTGATTCAGACCATGCATG 58.701 47.619 20.19 20.19 32.44 4.06
2261 3263 1.269102 GCTGATTCAGACCATGCATGC 60.269 52.381 21.69 11.82 32.44 4.06
2262 3264 2.021457 CTGATTCAGACCATGCATGCA 58.979 47.619 25.04 25.04 32.44 3.96
2303 3305 4.615513 AGGAGGAACAAGCTAGTCTATGT 58.384 43.478 0.00 0.00 0.00 2.29
2304 3306 4.647399 AGGAGGAACAAGCTAGTCTATGTC 59.353 45.833 0.00 0.00 0.00 3.06
2305 3307 4.647399 GGAGGAACAAGCTAGTCTATGTCT 59.353 45.833 0.00 0.00 0.00 3.41
2306 3308 5.828859 GGAGGAACAAGCTAGTCTATGTCTA 59.171 44.000 0.00 0.00 0.00 2.59
2307 3309 6.492087 GGAGGAACAAGCTAGTCTATGTCTAT 59.508 42.308 0.00 0.00 0.00 1.98
2308 3310 7.283625 AGGAACAAGCTAGTCTATGTCTATG 57.716 40.000 0.00 0.00 0.00 2.23
2377 3379 2.514205 ACTGTTTGCCTTGAACATGC 57.486 45.000 0.00 0.00 36.51 4.06
2378 3380 1.755959 ACTGTTTGCCTTGAACATGCA 59.244 42.857 0.00 0.00 36.51 3.96
2379 3381 2.366266 ACTGTTTGCCTTGAACATGCAT 59.634 40.909 0.00 0.00 36.51 3.96
2380 3382 2.734606 CTGTTTGCCTTGAACATGCATG 59.265 45.455 25.09 25.09 36.51 4.06
2439 3441 2.164422 GGCAAGCAAACCTGGAGTTATC 59.836 50.000 0.00 0.00 37.88 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.002990 CCACTGTGCTCATCTGCCA 60.003 57.895 1.29 0.00 0.00 4.92
1 2 0.743701 CTCCACTGTGCTCATCTGCC 60.744 60.000 1.29 0.00 0.00 4.85
2 3 0.743701 CCTCCACTGTGCTCATCTGC 60.744 60.000 1.29 0.00 0.00 4.26
3 4 0.900421 TCCTCCACTGTGCTCATCTG 59.100 55.000 1.29 0.00 0.00 2.90
5 6 0.177604 CCTCCTCCACTGTGCTCATC 59.822 60.000 1.29 0.00 0.00 2.92
6 7 0.546267 ACCTCCTCCACTGTGCTCAT 60.546 55.000 1.29 0.00 0.00 2.90
7 8 1.152247 ACCTCCTCCACTGTGCTCA 60.152 57.895 1.29 0.00 0.00 4.26
8 9 1.294780 CACCTCCTCCACTGTGCTC 59.705 63.158 1.29 0.00 0.00 4.26
9 10 2.219875 CCACCTCCTCCACTGTGCT 61.220 63.158 1.29 0.00 0.00 4.40
10 11 2.348998 CCACCTCCTCCACTGTGC 59.651 66.667 1.29 0.00 0.00 4.57
11 12 1.372683 CACCACCTCCTCCACTGTG 59.627 63.158 0.00 0.00 0.00 3.66
12 13 1.074471 ACACCACCTCCTCCACTGT 60.074 57.895 0.00 0.00 0.00 3.55
13 14 1.674057 GACACCACCTCCTCCACTG 59.326 63.158 0.00 0.00 0.00 3.66
14 15 1.536662 GGACACCACCTCCTCCACT 60.537 63.158 0.00 0.00 0.00 4.00
15 16 2.943978 CGGACACCACCTCCTCCAC 61.944 68.421 0.00 0.00 0.00 4.02
16 17 2.603473 CGGACACCACCTCCTCCA 60.603 66.667 0.00 0.00 0.00 3.86
17 18 4.083862 GCGGACACCACCTCCTCC 62.084 72.222 0.00 0.00 0.00 4.30
18 19 2.584391 AAGCGGACACCACCTCCTC 61.584 63.158 0.00 0.00 0.00 3.71
19 20 2.526873 AAGCGGACACCACCTCCT 60.527 61.111 0.00 0.00 0.00 3.69
20 21 2.185310 ATCAAGCGGACACCACCTCC 62.185 60.000 0.00 0.00 0.00 4.30
21 22 1.021390 CATCAAGCGGACACCACCTC 61.021 60.000 0.00 0.00 0.00 3.85
22 23 1.003355 CATCAAGCGGACACCACCT 60.003 57.895 0.00 0.00 0.00 4.00
23 24 2.690778 GCATCAAGCGGACACCACC 61.691 63.158 0.00 0.00 0.00 4.61
24 25 2.870372 GCATCAAGCGGACACCAC 59.130 61.111 0.00 0.00 0.00 4.16
33 34 3.757248 ATCCGTCCCCGCATCAAGC 62.757 63.158 0.00 0.00 40.87 4.01
34 35 1.889105 CATCCGTCCCCGCATCAAG 60.889 63.158 0.00 0.00 0.00 3.02
35 36 2.189257 CATCCGTCCCCGCATCAA 59.811 61.111 0.00 0.00 0.00 2.57
36 37 2.762043 TCATCCGTCCCCGCATCA 60.762 61.111 0.00 0.00 0.00 3.07
37 38 2.028125 TTCTCATCCGTCCCCGCATC 62.028 60.000 0.00 0.00 0.00 3.91
38 39 2.032860 CTTCTCATCCGTCCCCGCAT 62.033 60.000 0.00 0.00 0.00 4.73
39 40 2.682136 TTCTCATCCGTCCCCGCA 60.682 61.111 0.00 0.00 0.00 5.69
40 41 2.107141 CTTCTCATCCGTCCCCGC 59.893 66.667 0.00 0.00 0.00 6.13
41 42 2.107141 GCTTCTCATCCGTCCCCG 59.893 66.667 0.00 0.00 0.00 5.73
42 43 1.700042 ATGGCTTCTCATCCGTCCCC 61.700 60.000 0.00 0.00 0.00 4.81
43 44 0.533755 CATGGCTTCTCATCCGTCCC 60.534 60.000 0.00 0.00 0.00 4.46
44 45 0.533755 CCATGGCTTCTCATCCGTCC 60.534 60.000 0.00 0.00 0.00 4.79
45 46 0.179000 ACCATGGCTTCTCATCCGTC 59.821 55.000 13.04 0.00 0.00 4.79
46 47 0.107508 CACCATGGCTTCTCATCCGT 60.108 55.000 13.04 0.00 0.00 4.69
47 48 0.816825 CCACCATGGCTTCTCATCCG 60.817 60.000 13.04 0.00 0.00 4.18
48 49 0.257039 ACCACCATGGCTTCTCATCC 59.743 55.000 13.04 0.00 42.67 3.51
49 50 1.065199 TCACCACCATGGCTTCTCATC 60.065 52.381 13.04 0.00 42.67 2.92
50 51 0.994247 TCACCACCATGGCTTCTCAT 59.006 50.000 13.04 0.00 42.67 2.90
51 52 0.994247 ATCACCACCATGGCTTCTCA 59.006 50.000 13.04 0.00 42.67 3.27
52 53 1.386533 CATCACCACCATGGCTTCTC 58.613 55.000 13.04 0.00 42.67 2.87
53 54 0.033796 CCATCACCACCATGGCTTCT 60.034 55.000 13.04 0.00 42.67 2.85
54 55 2.496942 CCATCACCACCATGGCTTC 58.503 57.895 13.04 0.00 42.67 3.86
55 56 4.770540 CCATCACCACCATGGCTT 57.229 55.556 13.04 0.00 42.67 4.35
58 59 2.409055 CGTGCCATCACCACCATGG 61.409 63.158 11.19 11.19 45.02 3.66
59 60 1.371337 CTCGTGCCATCACCACCATG 61.371 60.000 0.00 0.00 40.04 3.66
60 61 1.078214 CTCGTGCCATCACCACCAT 60.078 57.895 0.00 0.00 40.04 3.55
61 62 2.347114 CTCGTGCCATCACCACCA 59.653 61.111 0.00 0.00 40.04 4.17
62 63 3.127533 GCTCGTGCCATCACCACC 61.128 66.667 0.00 0.00 40.04 4.61
63 64 3.490759 CGCTCGTGCCATCACCAC 61.491 66.667 3.52 0.00 40.04 4.16
75 76 3.777925 CAACAGGAACGGCGCTCG 61.778 66.667 6.90 12.33 45.88 5.03
76 77 4.090057 GCAACAGGAACGGCGCTC 62.090 66.667 6.90 3.57 0.00 5.03
77 78 2.521958 ATAGCAACAGGAACGGCGCT 62.522 55.000 6.90 0.00 38.81 5.92
78 79 2.036764 GATAGCAACAGGAACGGCGC 62.037 60.000 6.90 0.00 0.00 6.53
79 80 1.752501 CGATAGCAACAGGAACGGCG 61.753 60.000 4.80 4.80 0.00 6.46
80 81 2.006772 CGATAGCAACAGGAACGGC 58.993 57.895 0.00 0.00 0.00 5.68
93 94 2.557317 ACAATTTACACCCGGCGATAG 58.443 47.619 9.30 0.00 0.00 2.08
94 95 2.678836 CAACAATTTACACCCGGCGATA 59.321 45.455 9.30 0.00 0.00 2.92
95 96 1.470890 CAACAATTTACACCCGGCGAT 59.529 47.619 9.30 0.00 0.00 4.58
96 97 0.875728 CAACAATTTACACCCGGCGA 59.124 50.000 9.30 0.00 0.00 5.54
97 98 0.731174 GCAACAATTTACACCCGGCG 60.731 55.000 0.00 0.00 0.00 6.46
98 99 0.601057 AGCAACAATTTACACCCGGC 59.399 50.000 0.00 0.00 0.00 6.13
99 100 1.067915 CCAGCAACAATTTACACCCGG 60.068 52.381 0.00 0.00 0.00 5.73
100 101 1.067915 CCCAGCAACAATTTACACCCG 60.068 52.381 0.00 0.00 0.00 5.28
101 102 2.243810 TCCCAGCAACAATTTACACCC 58.756 47.619 0.00 0.00 0.00 4.61
102 103 4.244862 CATTCCCAGCAACAATTTACACC 58.755 43.478 0.00 0.00 0.00 4.16
103 104 4.021544 TCCATTCCCAGCAACAATTTACAC 60.022 41.667 0.00 0.00 0.00 2.90
104 105 4.155709 TCCATTCCCAGCAACAATTTACA 58.844 39.130 0.00 0.00 0.00 2.41
105 106 4.799564 TCCATTCCCAGCAACAATTTAC 57.200 40.909 0.00 0.00 0.00 2.01
106 107 7.487822 TTTATCCATTCCCAGCAACAATTTA 57.512 32.000 0.00 0.00 0.00 1.40
107 108 6.371595 TTTATCCATTCCCAGCAACAATTT 57.628 33.333 0.00 0.00 0.00 1.82
108 109 6.371595 TTTTATCCATTCCCAGCAACAATT 57.628 33.333 0.00 0.00 0.00 2.32
109 110 5.627503 GCTTTTATCCATTCCCAGCAACAAT 60.628 40.000 0.00 0.00 0.00 2.71
110 111 4.322650 GCTTTTATCCATTCCCAGCAACAA 60.323 41.667 0.00 0.00 0.00 2.83
111 112 3.195396 GCTTTTATCCATTCCCAGCAACA 59.805 43.478 0.00 0.00 0.00 3.33
112 113 3.430790 GGCTTTTATCCATTCCCAGCAAC 60.431 47.826 0.00 0.00 0.00 4.17
113 114 2.765699 GGCTTTTATCCATTCCCAGCAA 59.234 45.455 0.00 0.00 0.00 3.91
114 115 2.387757 GGCTTTTATCCATTCCCAGCA 58.612 47.619 0.00 0.00 0.00 4.41
115 116 1.338020 CGGCTTTTATCCATTCCCAGC 59.662 52.381 0.00 0.00 0.00 4.85
116 117 1.956477 CCGGCTTTTATCCATTCCCAG 59.044 52.381 0.00 0.00 0.00 4.45
117 118 1.410932 CCCGGCTTTTATCCATTCCCA 60.411 52.381 0.00 0.00 0.00 4.37
118 119 1.328279 CCCGGCTTTTATCCATTCCC 58.672 55.000 0.00 0.00 0.00 3.97
119 120 1.328279 CCCCGGCTTTTATCCATTCC 58.672 55.000 0.00 0.00 0.00 3.01
120 121 1.328279 CCCCCGGCTTTTATCCATTC 58.672 55.000 0.00 0.00 0.00 2.67
121 122 3.531821 CCCCCGGCTTTTATCCATT 57.468 52.632 0.00 0.00 0.00 3.16
136 137 1.188871 TTTCGTTCCCAAATGCCCCC 61.189 55.000 0.00 0.00 0.00 5.40
137 138 0.901827 ATTTCGTTCCCAAATGCCCC 59.098 50.000 0.00 0.00 0.00 5.80
138 139 1.469079 CGATTTCGTTCCCAAATGCCC 60.469 52.381 0.00 0.00 34.11 5.36
139 140 1.908065 CGATTTCGTTCCCAAATGCC 58.092 50.000 0.00 0.00 34.11 4.40
151 152 0.029567 CGGGGAGAGAGACGATTTCG 59.970 60.000 0.00 0.00 46.33 3.46
152 153 0.249114 GCGGGGAGAGAGACGATTTC 60.249 60.000 0.00 0.00 0.00 2.17
153 154 1.677637 GGCGGGGAGAGAGACGATTT 61.678 60.000 0.00 0.00 0.00 2.17
154 155 2.128507 GGCGGGGAGAGAGACGATT 61.129 63.158 0.00 0.00 0.00 3.34
155 156 2.519780 GGCGGGGAGAGAGACGAT 60.520 66.667 0.00 0.00 0.00 3.73
156 157 3.997400 CTGGCGGGGAGAGAGACGA 62.997 68.421 0.00 0.00 0.00 4.20
157 158 3.522731 CTGGCGGGGAGAGAGACG 61.523 72.222 0.00 0.00 0.00 4.18
158 159 3.151022 CCTGGCGGGGAGAGAGAC 61.151 72.222 3.77 0.00 0.00 3.36
159 160 3.347590 TCCTGGCGGGGAGAGAGA 61.348 66.667 13.58 0.00 35.33 3.10
166 167 4.785453 GACTTGCTCCTGGCGGGG 62.785 72.222 13.58 4.40 45.43 5.73
167 168 3.551496 TTGACTTGCTCCTGGCGGG 62.551 63.158 5.83 5.83 45.43 6.13
168 169 1.580845 CTTTGACTTGCTCCTGGCGG 61.581 60.000 0.00 0.00 45.43 6.13
169 170 0.603707 TCTTTGACTTGCTCCTGGCG 60.604 55.000 0.00 0.00 45.43 5.69
170 171 1.163554 CTCTTTGACTTGCTCCTGGC 58.836 55.000 0.00 0.00 42.22 4.85
171 172 1.349026 TCCTCTTTGACTTGCTCCTGG 59.651 52.381 0.00 0.00 0.00 4.45
172 173 2.038295 ACTCCTCTTTGACTTGCTCCTG 59.962 50.000 0.00 0.00 0.00 3.86
173 174 2.038295 CACTCCTCTTTGACTTGCTCCT 59.962 50.000 0.00 0.00 0.00 3.69
174 175 2.037772 TCACTCCTCTTTGACTTGCTCC 59.962 50.000 0.00 0.00 0.00 4.70
216 217 3.838271 GAGCGATGGAGGGCGTGA 61.838 66.667 0.00 0.00 0.00 4.35
217 218 4.899239 GGAGCGATGGAGGGCGTG 62.899 72.222 0.00 0.00 0.00 5.34
220 221 4.593864 GTCGGAGCGATGGAGGGC 62.594 72.222 0.00 0.00 38.42 5.19
221 222 3.917760 GGTCGGAGCGATGGAGGG 61.918 72.222 0.00 0.00 38.42 4.30
222 223 2.032860 ATTGGTCGGAGCGATGGAGG 62.033 60.000 9.07 0.00 38.42 4.30
223 224 0.598680 GATTGGTCGGAGCGATGGAG 60.599 60.000 14.37 0.00 38.42 3.86
224 225 1.441729 GATTGGTCGGAGCGATGGA 59.558 57.895 14.37 0.00 38.42 3.41
225 226 1.951130 CGATTGGTCGGAGCGATGG 60.951 63.158 14.37 9.56 44.00 3.51
226 227 3.617824 CGATTGGTCGGAGCGATG 58.382 61.111 14.37 4.07 44.00 3.84
244 245 0.034896 ACACGTCACCAGATGGGAAC 59.965 55.000 3.48 0.14 36.20 3.62
245 246 0.320374 GACACGTCACCAGATGGGAA 59.680 55.000 3.48 0.00 36.20 3.97
246 247 0.830023 TGACACGTCACCAGATGGGA 60.830 55.000 3.48 0.00 36.20 4.37
247 248 0.034756 TTGACACGTCACCAGATGGG 59.965 55.000 3.48 0.00 39.66 4.00
248 249 1.148310 GTTGACACGTCACCAGATGG 58.852 55.000 0.00 0.00 39.66 3.51
249 250 0.784178 CGTTGACACGTCACCAGATG 59.216 55.000 0.00 0.00 41.84 2.90
250 251 3.195041 CGTTGACACGTCACCAGAT 57.805 52.632 0.00 0.00 41.84 2.90
251 252 4.722008 CGTTGACACGTCACCAGA 57.278 55.556 0.00 0.00 41.84 3.86
263 264 3.333029 TCAGGATGCAGATTTCGTTGA 57.667 42.857 0.00 0.00 34.76 3.18
304 305 4.918129 ACGCGACGCAACGACAGT 62.918 61.111 21.35 4.45 35.09 3.55
312 313 1.295357 AATGATTCCAACGCGACGCA 61.295 50.000 21.35 0.00 0.00 5.24
444 452 9.998106 ACAGACTTTAAGCAAAACTTATCTCTA 57.002 29.630 0.00 0.00 40.55 2.43
445 453 8.910351 ACAGACTTTAAGCAAAACTTATCTCT 57.090 30.769 0.00 0.00 40.55 3.10
532 547 4.392921 ACTCCAATCTCTAACATGGACG 57.607 45.455 0.00 0.00 37.05 4.79
533 548 5.598830 TCCTACTCCAATCTCTAACATGGAC 59.401 44.000 0.00 0.00 37.05 4.02
534 549 5.777449 TCCTACTCCAATCTCTAACATGGA 58.223 41.667 0.00 0.00 39.57 3.41
535 550 6.485830 TTCCTACTCCAATCTCTAACATGG 57.514 41.667 0.00 0.00 0.00 3.66
536 551 8.865090 ACTATTCCTACTCCAATCTCTAACATG 58.135 37.037 0.00 0.00 0.00 3.21
538 553 9.575868 CTACTATTCCTACTCCAATCTCTAACA 57.424 37.037 0.00 0.00 0.00 2.41
674 779 4.202151 GCAGCCCCAATAAGAACCAAATAG 60.202 45.833 0.00 0.00 0.00 1.73
675 780 3.704061 GCAGCCCCAATAAGAACCAAATA 59.296 43.478 0.00 0.00 0.00 1.40
676 781 2.501316 GCAGCCCCAATAAGAACCAAAT 59.499 45.455 0.00 0.00 0.00 2.32
677 782 1.899142 GCAGCCCCAATAAGAACCAAA 59.101 47.619 0.00 0.00 0.00 3.28
678 783 1.555967 GCAGCCCCAATAAGAACCAA 58.444 50.000 0.00 0.00 0.00 3.67
817 1495 0.114364 TGTCAGGTAGGAGCACCTCA 59.886 55.000 5.75 0.00 46.34 3.86
990 1690 2.270352 TTGCTTCCATGTCTTCCGTT 57.730 45.000 0.00 0.00 0.00 4.44
992 1692 2.554032 ACTTTTGCTTCCATGTCTTCCG 59.446 45.455 0.00 0.00 0.00 4.30
993 1693 4.590850 AACTTTTGCTTCCATGTCTTCC 57.409 40.909 0.00 0.00 0.00 3.46
1175 1881 2.027653 TGGACGTCATATTTGTCAGCCA 60.028 45.455 18.91 0.00 34.32 4.75
1540 2276 2.159627 GTCATGCTTAAAGACACGTGGG 59.840 50.000 21.57 0.00 32.68 4.61
1552 2288 4.963276 GGCAACTATGTTGTCATGCTTA 57.037 40.909 9.75 0.00 35.70 3.09
1587 2323 2.564721 GCAAACCGGCTGCCTCTTT 61.565 57.895 17.92 10.56 33.51 2.52
1624 2360 8.430801 AGTAGAAGCTTATGTCATGCTTAAAG 57.569 34.615 3.25 0.20 45.07 1.85
1679 2415 2.201732 GAGTGTTGTGAGCTTCGACAA 58.798 47.619 12.44 8.20 32.03 3.18
1735 2471 0.648958 GAACGATAAACTTCCCCGCG 59.351 55.000 0.00 0.00 0.00 6.46
1821 2561 2.492012 CCATAGGATGCTCTCTTGTGC 58.508 52.381 0.00 0.00 0.00 4.57
1926 2920 2.975851 GCAGTTGCAACGAATCTGAAAG 59.024 45.455 23.21 6.20 41.59 2.62
2027 3023 3.975168 TCTACCTACCTGGCAAAACTC 57.025 47.619 0.00 0.00 40.22 3.01
2034 3030 1.697082 GGCCCTTCTACCTACCTGGC 61.697 65.000 0.00 0.00 40.22 4.85
2256 3258 1.573436 GCGCTCTTATCCTGCATGC 59.427 57.895 11.82 11.82 0.00 4.06
2259 3261 2.586079 GCGCGCTCTTATCCTGCA 60.586 61.111 26.67 0.00 0.00 4.41
2260 3262 3.341835 GGCGCGCTCTTATCCTGC 61.342 66.667 32.29 5.91 0.00 4.85
2261 3263 3.032609 CGGCGCGCTCTTATCCTG 61.033 66.667 32.29 0.00 0.00 3.86
2262 3264 3.200887 CTCGGCGCGCTCTTATCCT 62.201 63.158 32.29 0.00 0.00 3.24
2303 3305 7.002276 ACATCTTTGGATTCATCATGCATAGA 58.998 34.615 0.00 0.00 42.64 1.98
2304 3306 7.215719 ACATCTTTGGATTCATCATGCATAG 57.784 36.000 0.00 0.00 34.74 2.23
2305 3307 7.285858 TCAACATCTTTGGATTCATCATGCATA 59.714 33.333 0.00 0.00 32.36 3.14
2306 3308 6.097696 TCAACATCTTTGGATTCATCATGCAT 59.902 34.615 0.00 0.00 32.36 3.96
2307 3309 5.419471 TCAACATCTTTGGATTCATCATGCA 59.581 36.000 0.00 0.00 0.00 3.96
2308 3310 5.898174 TCAACATCTTTGGATTCATCATGC 58.102 37.500 0.00 0.00 0.00 4.06
2351 3353 2.031120 TCAAGGCAAACAGTTTCCCAG 58.969 47.619 8.79 0.81 0.00 4.45
2352 3354 2.151502 TCAAGGCAAACAGTTTCCCA 57.848 45.000 8.79 0.00 0.00 4.37
2377 3379 0.835276 TGCTCCTGATCCAGTCCATG 59.165 55.000 0.00 0.00 0.00 3.66
2378 3380 1.588239 TTGCTCCTGATCCAGTCCAT 58.412 50.000 0.00 0.00 0.00 3.41
2379 3381 1.361204 TTTGCTCCTGATCCAGTCCA 58.639 50.000 0.00 0.00 0.00 4.02
2380 3382 2.087646 GTTTTGCTCCTGATCCAGTCC 58.912 52.381 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.