Multiple sequence alignment - TraesCS6A01G419400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G419400 chr6A 100.000 3643 0 0 706 4348 616860374 616864016 0.000000e+00 6728.0
1 TraesCS6A01G419400 chr6A 91.351 1318 107 3 2096 3413 616880273 616881583 0.000000e+00 1796.0
2 TraesCS6A01G419400 chr6A 100.000 401 0 0 1 401 616859669 616860069 0.000000e+00 741.0
3 TraesCS6A01G419400 chr6A 82.410 614 56 29 714 1301 616878761 616879348 5.050000e-134 488.0
4 TraesCS6A01G419400 chr6A 88.350 103 12 0 9 111 616875498 616875600 1.640000e-24 124.0
5 TraesCS6A01G419400 chr6A 79.675 123 14 6 1662 1783 616879602 616879714 1.300000e-10 78.7
6 TraesCS6A01G419400 chr6A 91.379 58 1 3 284 341 616878794 616878847 4.660000e-10 76.8
7 TraesCS6A01G419400 chr6D 92.857 2674 123 22 706 3344 472968031 472965391 0.000000e+00 3818.0
8 TraesCS6A01G419400 chr6D 89.831 2252 164 34 2130 4341 472963252 472961026 0.000000e+00 2830.0
9 TraesCS6A01G419400 chr6D 87.783 1588 158 11 1787 3344 472945204 472943623 0.000000e+00 1825.0
10 TraesCS6A01G419400 chr6D 90.808 1262 115 1 2152 3413 472941207 472939947 0.000000e+00 1687.0
11 TraesCS6A01G419400 chr6D 83.659 410 42 7 897 1298 472946085 472945693 3.200000e-96 363.0
12 TraesCS6A01G419400 chr6D 91.538 260 22 0 5 264 472968460 472968201 4.130000e-95 359.0
13 TraesCS6A01G419400 chr6D 82.593 270 30 10 1658 1924 472945373 472945118 5.660000e-54 222.0
14 TraesCS6A01G419400 chr6D 79.231 260 40 9 5 264 472946716 472946471 7.480000e-38 169.0
15 TraesCS6A01G419400 chr6D 88.043 92 11 0 13 104 320712886 320712795 4.600000e-20 110.0
16 TraesCS6A01G419400 chr6D 93.103 58 1 2 284 341 472946274 472946220 1.000000e-11 82.4
17 TraesCS6A01G419400 chr6D 77.857 140 14 7 1529 1655 458722613 458722748 2.170000e-08 71.3
18 TraesCS6A01G419400 chr6B 93.351 1534 80 5 1833 3344 718334646 718333113 0.000000e+00 2248.0
19 TraesCS6A01G419400 chr6B 93.409 1411 77 6 2152 3562 718328648 718327254 0.000000e+00 2076.0
20 TraesCS6A01G419400 chr6B 88.154 1587 149 14 1789 3344 718317752 718316174 0.000000e+00 1853.0
21 TraesCS6A01G419400 chr6B 89.937 1262 126 1 2152 3413 718313476 718312216 0.000000e+00 1626.0
22 TraesCS6A01G419400 chr6B 84.564 596 43 17 709 1300 718335546 718334996 2.960000e-151 545.0
23 TraesCS6A01G419400 chr6B 88.889 261 18 3 5 262 718335969 718335717 1.170000e-80 311.0
24 TraesCS6A01G419400 chr6B 81.864 397 45 16 927 1300 718318657 718318265 4.220000e-80 309.0
25 TraesCS6A01G419400 chr6B 84.397 141 18 3 263 401 718335689 718335551 7.580000e-28 135.0
26 TraesCS6A01G419400 chr6B 78.621 145 18 10 1522 1655 697694110 697694252 2.790000e-12 84.2
27 TraesCS6A01G419400 chr6B 83.333 90 5 5 283 364 718318883 718318796 1.680000e-09 75.0
28 TraesCS6A01G419400 chr5D 84.564 596 42 23 706 1300 546337484 546338030 2.960000e-151 545.0
29 TraesCS6A01G419400 chr5D 83.803 426 39 4 2 399 546337059 546337482 1.140000e-100 377.0
30 TraesCS6A01G419400 chr5D 79.389 393 57 11 3878 4250 494238030 494237642 5.580000e-64 255.0
31 TraesCS6A01G419400 chr5D 83.650 263 38 5 3878 4137 507433729 507433469 4.340000e-60 243.0
32 TraesCS6A01G419400 chr2D 77.919 471 76 12 3878 4324 131133676 131133210 7.170000e-68 268.0
33 TraesCS6A01G419400 chr2D 79.949 394 54 11 3878 4250 491491609 491491998 2.580000e-67 267.0
34 TraesCS6A01G419400 chr2D 80.233 344 64 4 3905 4246 636535225 636534884 5.580000e-64 255.0
35 TraesCS6A01G419400 chr2D 84.024 169 15 9 4154 4316 43802143 43801981 7.530000e-33 152.0
36 TraesCS6A01G419400 chr2D 97.368 38 1 0 1620 1657 36413258 36413295 1.010000e-06 65.8
37 TraesCS6A01G419400 chr1D 79.648 398 60 9 3871 4250 247134435 247134041 2.580000e-67 267.0
38 TraesCS6A01G419400 chr1D 81.250 176 29 4 4154 4327 108724399 108724572 5.860000e-29 139.0
39 TraesCS6A01G419400 chr1D 80.571 175 28 6 4153 4324 411780657 411780828 3.530000e-26 130.0
40 TraesCS6A01G419400 chr4D 77.778 477 73 14 3878 4324 468007782 468007309 3.330000e-66 263.0
41 TraesCS6A01G419400 chr7D 84.291 261 35 5 3878 4134 628543274 628543016 2.600000e-62 250.0
42 TraesCS6A01G419400 chr1A 76.733 404 71 19 3934 4323 331519429 331519823 2.050000e-48 204.0
43 TraesCS6A01G419400 chr7B 79.675 246 43 6 4035 4276 711801404 711801646 2.080000e-38 171.0
44 TraesCS6A01G419400 chr7B 78.862 246 45 6 4035 4276 711835564 711835806 4.500000e-35 159.0
45 TraesCS6A01G419400 chr7B 75.072 345 64 12 1323 1657 664400484 664400152 1.630000e-29 141.0
46 TraesCS6A01G419400 chr7B 84.783 92 14 0 13 104 75890041 75889950 4.630000e-15 93.5
47 TraesCS6A01G419400 chr5B 85.366 164 23 1 4140 4302 337843283 337843446 7.480000e-38 169.0
48 TraesCS6A01G419400 chr5B 90.000 70 7 0 4255 4324 691597147 691597078 1.670000e-14 91.6
49 TraesCS6A01G419400 chr5B 93.617 47 2 1 4281 4327 696481560 696481515 7.800000e-08 69.4
50 TraesCS6A01G419400 chr5B 93.182 44 3 0 4281 4324 658462933 658462890 1.010000e-06 65.8
51 TraesCS6A01G419400 chr5A 80.085 236 40 5 1692 1924 664260921 664261152 7.480000e-38 169.0
52 TraesCS6A01G419400 chr4A 80.978 184 20 12 4152 4326 89680414 89680591 9.810000e-27 132.0
53 TraesCS6A01G419400 chr3D 87.500 96 12 0 9 104 589577871 589577776 1.280000e-20 111.0
54 TraesCS6A01G419400 chr3D 85.393 89 13 0 13 101 81373598 81373686 4.630000e-15 93.5
55 TraesCS6A01G419400 chr3B 84.536 97 13 2 13 108 672095185 672095090 1.290000e-15 95.3
56 TraesCS6A01G419400 chr7A 89.552 67 6 1 1581 1647 232879642 232879707 2.790000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G419400 chr6A 616859669 616864016 4347 False 3734.500000 6728 100.000000 1 4348 2 chr6A.!!$F1 4347
1 TraesCS6A01G419400 chr6A 616875498 616881583 6085 False 512.700000 1796 86.633000 9 3413 5 chr6A.!!$F2 3404
2 TraesCS6A01G419400 chr6D 472961026 472968460 7434 True 2335.666667 3818 91.408667 5 4341 3 chr6D.!!$R3 4336
3 TraesCS6A01G419400 chr6D 472939947 472946716 6769 True 724.733333 1825 86.196167 5 3413 6 chr6D.!!$R2 3408
4 TraesCS6A01G419400 chr6B 718327254 718328648 1394 True 2076.000000 2076 93.409000 2152 3562 1 chr6B.!!$R1 1410
5 TraesCS6A01G419400 chr6B 718312216 718318883 6667 True 965.750000 1853 85.822000 283 3413 4 chr6B.!!$R2 3130
6 TraesCS6A01G419400 chr6B 718333113 718335969 2856 True 809.750000 2248 87.800250 5 3344 4 chr6B.!!$R3 3339
7 TraesCS6A01G419400 chr5D 546337059 546338030 971 False 461.000000 545 84.183500 2 1300 2 chr5D.!!$F1 1298

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
334 3389 0.179134 GACACTCGATCGAGGTTGGG 60.179 60.000 39.70 26.94 45.88 4.12 F
975 4113 1.001974 TCCACCATTGTTCACTCGAGG 59.998 52.381 18.41 5.96 0.00 4.63 F
1446 4621 0.884704 TCTTGCGAGGTTTCAGCCAC 60.885 55.000 0.00 0.00 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1435 4610 0.459489 TTTGTGCAGTGGCTGAAACC 59.541 50.000 0.0 0.0 41.91 3.27 R
1927 5438 1.069906 GCTTTTGTTCGCACTGACGAT 60.070 47.619 0.0 0.0 42.54 3.73 R
3349 18095 0.238289 GTCAAGGGCACAACATGTCG 59.762 55.000 0.0 0.0 31.63 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 103 7.329226 ACATGCATTAACATTTTGCTAGTCAAC 59.671 33.333 0.00 0.00 37.28 3.18
143 426 3.155501 ACACACAGAGGTAGTACTGACC 58.844 50.000 5.39 9.27 37.54 4.02
155 438 2.040012 AGTACTGACCAGAGAACCGAGA 59.960 50.000 3.76 0.00 0.00 4.04
210 494 3.214696 GGGAGATCCGATTTTCATGGT 57.785 47.619 0.00 0.00 36.71 3.55
211 495 3.555966 GGGAGATCCGATTTTCATGGTT 58.444 45.455 0.00 0.00 36.71 3.67
235 519 8.827677 GTTAATATAGGAAAGATTGCACGTTCT 58.172 33.333 0.00 0.00 0.00 3.01
276 590 2.784347 GGCAAAGAGGGAGTATATGCC 58.216 52.381 0.00 0.00 44.24 4.40
280 594 4.457257 GCAAAGAGGGAGTATATGCCAATC 59.543 45.833 0.00 0.00 43.31 2.67
281 595 5.747248 GCAAAGAGGGAGTATATGCCAATCT 60.747 44.000 0.00 0.00 43.31 2.40
324 3379 2.170397 TGGTGCCATTATGACACTCGAT 59.830 45.455 11.15 0.00 34.70 3.59
325 3380 2.802816 GGTGCCATTATGACACTCGATC 59.197 50.000 11.15 0.00 34.70 3.69
326 3381 2.472861 GTGCCATTATGACACTCGATCG 59.527 50.000 9.36 9.36 0.00 3.69
327 3382 2.360801 TGCCATTATGACACTCGATCGA 59.639 45.455 18.32 18.32 0.00 3.59
329 3384 3.569548 CCATTATGACACTCGATCGAGG 58.430 50.000 39.70 31.09 45.88 4.63
330 3385 3.004839 CCATTATGACACTCGATCGAGGT 59.995 47.826 39.70 33.48 45.88 3.85
331 3386 4.499865 CCATTATGACACTCGATCGAGGTT 60.500 45.833 39.70 29.02 45.88 3.50
332 3387 2.568696 ATGACACTCGATCGAGGTTG 57.431 50.000 39.70 32.38 45.88 3.77
333 3388 0.526211 TGACACTCGATCGAGGTTGG 59.474 55.000 39.70 28.95 45.88 3.77
334 3389 0.179134 GACACTCGATCGAGGTTGGG 60.179 60.000 39.70 26.94 45.88 4.12
335 3390 1.141881 CACTCGATCGAGGTTGGGG 59.858 63.158 39.70 20.62 45.88 4.96
368 3424 8.665906 ACTTAAGAGCCACTCTAGAGTATAGAT 58.334 37.037 24.75 15.07 40.28 1.98
370 3426 6.952605 AGAGCCACTCTAGAGTATAGATCT 57.047 41.667 24.75 23.24 39.28 2.75
371 3427 7.329746 AGAGCCACTCTAGAGTATAGATCTT 57.670 40.000 24.75 11.37 39.28 2.40
786 3844 2.026915 AGCTGTGCCATTATGACACTCA 60.027 45.455 12.47 0.00 35.33 3.41
828 3886 4.440826 GACTAGAGACCCAGTCTGGATA 57.559 50.000 21.23 4.36 43.53 2.59
846 3913 4.058817 GGATAAGTATGAGAAGCCCGTTG 58.941 47.826 0.00 0.00 0.00 4.10
863 3930 2.034685 CGTTGAGGAAGGAGATCGCATA 59.965 50.000 0.00 0.00 0.00 3.14
909 4034 7.730784 ACTAGTAGAGTACTAAATCCCATGCAT 59.269 37.037 3.59 0.00 40.49 3.96
944 4078 2.660572 CTAGCTAGCTCCCAAGTCTGA 58.339 52.381 23.26 0.00 0.00 3.27
975 4113 1.001974 TCCACCATTGTTCACTCGAGG 59.998 52.381 18.41 5.96 0.00 4.63
1005 4145 3.815401 ACAAGCCAGTGTACAAGATGAAC 59.185 43.478 0.00 0.00 0.00 3.18
1140 4280 1.663695 CGCGGGTTCCTCAATTACAT 58.336 50.000 0.00 0.00 0.00 2.29
1173 4347 6.472887 TCTTTGTAAGTCCCCTCAATTACAG 58.527 40.000 0.00 0.00 38.82 2.74
1174 4348 4.216411 TGTAAGTCCCCTCAATTACAGC 57.784 45.455 0.00 0.00 34.20 4.40
1177 4351 4.388577 AAGTCCCCTCAATTACAGCTTT 57.611 40.909 0.00 0.00 0.00 3.51
1196 4370 5.173774 CTTTCAAGCAACAGCTCTTTACA 57.826 39.130 0.00 0.00 37.72 2.41
1197 4371 4.552166 TTCAAGCAACAGCTCTTTACAC 57.448 40.909 0.00 0.00 37.72 2.90
1198 4372 3.540617 TCAAGCAACAGCTCTTTACACA 58.459 40.909 0.00 0.00 37.72 3.72
1199 4373 3.312421 TCAAGCAACAGCTCTTTACACAC 59.688 43.478 0.00 0.00 37.72 3.82
1222 4396 4.143179 CGTTTAGGTTTCGAGTGTTCATCC 60.143 45.833 0.00 0.00 0.00 3.51
1233 4407 4.151867 CGAGTGTTCATCCGATCTATACGA 59.848 45.833 0.00 0.00 0.00 3.43
1279 4454 7.412346 CCATCGTCTGAAAAACTCATTACTCAG 60.412 40.741 0.00 0.00 34.59 3.35
1281 4456 7.378966 TCGTCTGAAAAACTCATTACTCAGAT 58.621 34.615 3.17 0.00 39.97 2.90
1305 4480 6.560003 TCTTTGCCCATAGTATGAAGAGAA 57.440 37.500 11.91 0.00 0.00 2.87
1306 4481 6.957631 TCTTTGCCCATAGTATGAAGAGAAA 58.042 36.000 11.91 5.17 0.00 2.52
1334 4509 1.998530 CCTCTTGGGTGCCCATACA 59.001 57.895 11.20 0.00 46.64 2.29
1354 4529 5.607119 ACACCGTCATGAACAGTAAATTC 57.393 39.130 0.00 0.00 0.00 2.17
1418 4593 5.649782 AGGACATCAAACATGATCAAACC 57.350 39.130 0.00 0.00 0.00 3.27
1435 4610 6.182039 TCAAACCTTTGATATTCTTGCGAG 57.818 37.500 0.00 0.00 41.88 5.03
1446 4621 0.884704 TCTTGCGAGGTTTCAGCCAC 60.885 55.000 0.00 0.00 0.00 5.01
1447 4622 0.886490 CTTGCGAGGTTTCAGCCACT 60.886 55.000 0.00 0.00 0.00 4.00
1448 4623 1.165907 TTGCGAGGTTTCAGCCACTG 61.166 55.000 0.00 0.00 0.00 3.66
1449 4624 2.970974 GCGAGGTTTCAGCCACTGC 61.971 63.158 0.00 0.00 37.95 4.40
1450 4625 1.597854 CGAGGTTTCAGCCACTGCA 60.598 57.895 0.00 0.00 41.13 4.41
1451 4626 1.845809 CGAGGTTTCAGCCACTGCAC 61.846 60.000 0.00 0.00 41.13 4.57
1468 4643 3.417101 TGCACAAATAACATTCGAGGGT 58.583 40.909 0.00 0.00 0.00 4.34
1554 4786 1.676006 CCTCGGATGTTATTTGTGGCC 59.324 52.381 0.00 0.00 0.00 5.36
1573 4805 2.472488 GCCGAAACTTTGCAAGAACATG 59.528 45.455 0.00 0.00 0.00 3.21
1579 4811 7.358352 CCGAAACTTTGCAAGAACATGAAATAC 60.358 37.037 0.00 0.00 0.00 1.89
1616 4848 5.847670 TGTTCAAAAGTTTCGGGTTTTTG 57.152 34.783 3.27 3.27 41.05 2.44
1713 5017 9.561270 GATCGTTCTCTGATTAATTCATCGATA 57.439 33.333 0.00 0.00 34.24 2.92
1751 5055 4.594491 AGTATATGACCATGTGGCAGATCA 59.406 41.667 0.00 0.00 39.32 2.92
1807 5216 1.821332 CCTTCTCCCGCATCAAGCC 60.821 63.158 0.00 0.00 41.38 4.35
1903 5414 1.823169 TACACCACCTTCTCCGGCAC 61.823 60.000 0.00 0.00 0.00 5.01
1951 5462 1.199624 CAGTGCGAACAAAAGCCAAC 58.800 50.000 0.00 0.00 0.00 3.77
1999 5542 4.142752 GGACGGTTGTTAAATCTGCCTAAC 60.143 45.833 0.00 0.00 0.00 2.34
2000 5543 4.391155 ACGGTTGTTAAATCTGCCTAACA 58.609 39.130 0.00 0.00 36.48 2.41
2155 6056 8.798859 AACTCTTTTGTGCATCTTACAGATAT 57.201 30.769 0.00 0.00 32.12 1.63
2432 6333 2.726274 GTGACACACGACGTCCCT 59.274 61.111 10.58 0.00 32.15 4.20
2800 14199 4.019312 GGCGACCCCCGTAAACCA 62.019 66.667 0.00 0.00 41.15 3.67
2897 14296 2.223805 CGTCACAGCTGCCACAGATATA 60.224 50.000 15.27 0.00 32.44 0.86
3029 17775 4.003788 CTGGTGTTCCTCCCGCGT 62.004 66.667 4.92 0.00 34.23 6.01
3032 17778 1.219935 GGTGTTCCTCCCGCGTAAT 59.780 57.895 4.92 0.00 0.00 1.89
3035 17781 1.448893 GTTCCTCCCGCGTAATGCA 60.449 57.895 4.92 0.00 46.97 3.96
3071 17817 4.082523 CCGTGGGGCGACATGAGT 62.083 66.667 0.00 0.00 44.77 3.41
3349 18095 5.885912 TGGCCAATCCTTCATTTAACTAGAC 59.114 40.000 0.61 0.00 35.26 2.59
3354 18100 7.495934 CCAATCCTTCATTTAACTAGACGACAT 59.504 37.037 0.00 0.00 0.00 3.06
3376 18122 0.749818 TGTGCCCTTGACGCAAAGAA 60.750 50.000 0.00 0.00 38.13 2.52
3416 18162 3.241553 CGATGCGATCTATATGAAAGCCG 59.758 47.826 0.00 0.00 32.64 5.52
3442 18188 1.043116 ATGGGATCAAGGACGAGCGA 61.043 55.000 0.00 0.00 0.00 4.93
3450 18196 1.532604 AAGGACGAGCGATGTCACCA 61.533 55.000 0.00 0.00 38.10 4.17
3484 18230 3.479269 CGCAGGAGTTTCGCGGTC 61.479 66.667 6.13 0.00 45.08 4.79
3498 18244 3.526534 TCGCGGTCATCAATTGTAATCA 58.473 40.909 6.13 0.00 0.00 2.57
3533 18279 0.758734 AGTCTACTTGTGGCAGTGCA 59.241 50.000 18.61 0.00 0.00 4.57
3543 18289 2.954989 TGTGGCAGTGCAGTTTCAATAA 59.045 40.909 18.61 0.00 0.00 1.40
3566 18312 1.226030 ACACCTCGCCTAAAACACGC 61.226 55.000 0.00 0.00 0.00 5.34
3567 18313 1.070105 ACCTCGCCTAAAACACGCA 59.930 52.632 0.00 0.00 0.00 5.24
3576 18322 5.173492 TCGCCTAAAACACGCAAATAAAAAC 59.827 36.000 0.00 0.00 0.00 2.43
3580 18326 7.566868 GCCTAAAACACGCAAATAAAAACTCAG 60.567 37.037 0.00 0.00 0.00 3.35
3582 18328 5.508200 AACACGCAAATAAAAACTCAGGA 57.492 34.783 0.00 0.00 0.00 3.86
3583 18329 5.108385 ACACGCAAATAAAAACTCAGGAG 57.892 39.130 0.00 0.00 0.00 3.69
3586 18332 5.796935 CACGCAAATAAAAACTCAGGAGATG 59.203 40.000 2.79 0.00 0.00 2.90
3589 18335 6.306356 CGCAAATAAAAACTCAGGAGATGTTG 59.694 38.462 2.79 0.00 0.00 3.33
3604 18350 6.320418 AGGAGATGTTGTTTTAACGGAAAAGT 59.680 34.615 0.00 0.00 37.70 2.66
3607 18353 9.505995 GAGATGTTGTTTTAACGGAAAAGTAAA 57.494 29.630 0.00 0.00 37.70 2.01
3664 18413 0.890683 CCAATGTGAAAGCACCTCCC 59.109 55.000 0.00 0.00 44.51 4.30
3665 18414 1.548582 CCAATGTGAAAGCACCTCCCT 60.549 52.381 0.00 0.00 44.51 4.20
3716 18465 9.723601 AAAGGCATAATAAAAGCAAAAATGAGA 57.276 25.926 0.00 0.00 0.00 3.27
3717 18466 8.707938 AGGCATAATAAAAGCAAAAATGAGAC 57.292 30.769 0.00 0.00 0.00 3.36
3719 18468 7.548780 GGCATAATAAAAGCAAAAATGAGACCA 59.451 33.333 0.00 0.00 0.00 4.02
3723 18495 5.357742 AAAAGCAAAAATGAGACCAAGGT 57.642 34.783 0.00 0.00 0.00 3.50
3727 18499 6.029346 AGCAAAAATGAGACCAAGGTTATG 57.971 37.500 0.00 0.00 0.00 1.90
3733 18505 4.901197 TGAGACCAAGGTTATGCTAACA 57.099 40.909 0.00 0.00 0.00 2.41
3744 18516 7.354751 AGGTTATGCTAACAACAAGGAAAAA 57.645 32.000 7.90 0.00 0.00 1.94
3785 18557 9.959721 AAGTCTAGCCTGAAATAGAATAAAACA 57.040 29.630 0.00 0.00 30.11 2.83
3786 18558 9.959721 AGTCTAGCCTGAAATAGAATAAAACAA 57.040 29.630 0.00 0.00 30.11 2.83
3798 18570 5.364778 AGAATAAAACAAACAAACCAGGGC 58.635 37.500 0.00 0.00 0.00 5.19
3814 18586 1.076777 GGCCTGCCCATACACACAT 60.077 57.895 0.00 0.00 0.00 3.21
3842 18619 3.181475 GCTCATCTCCGTCCACAAGATAA 60.181 47.826 0.00 0.00 0.00 1.75
3876 18653 3.706600 AAGTTATGGCTCGTAAACCCA 57.293 42.857 0.00 0.00 0.00 4.51
3916 18693 5.186198 AGTAATTCTTCCAAAGATCACCCG 58.814 41.667 0.00 0.00 37.38 5.28
3918 18695 0.690192 TCTTCCAAAGATCACCCGCA 59.310 50.000 0.00 0.00 31.20 5.69
3925 18702 4.176752 GATCACCCGCACCTCCCC 62.177 72.222 0.00 0.00 0.00 4.81
3934 18711 2.672996 CACCTCCCCAAGTTGCGG 60.673 66.667 0.00 0.00 0.00 5.69
3941 18718 2.336088 CCAAGTTGCGGCAAGTGG 59.664 61.111 22.67 23.15 0.00 4.00
3942 18719 2.355009 CAAGTTGCGGCAAGTGGC 60.355 61.111 22.67 8.29 43.74 5.01
3966 18743 1.005867 GCATGTGCCCCACTTGTTG 60.006 57.895 11.31 0.70 40.25 3.33
3971 18748 1.683707 TGCCCCACTTGTTGCAACA 60.684 52.632 27.96 27.96 37.08 3.33
3974 18751 0.033781 CCCCACTTGTTGCAACATGG 59.966 55.000 35.06 33.59 38.30 3.66
3977 18754 1.411977 CCACTTGTTGCAACATGGGAA 59.588 47.619 36.30 21.11 39.16 3.97
3981 18758 4.024725 CACTTGTTGCAACATGGGAATTTG 60.025 41.667 35.06 24.24 39.16 2.32
3982 18759 3.834489 TGTTGCAACATGGGAATTTGT 57.166 38.095 27.96 0.00 33.17 2.83
3984 18761 3.494048 TGTTGCAACATGGGAATTTGTCC 60.494 43.478 27.96 0.00 38.78 4.02
4036 18814 7.215755 GTGTTTTATCTTTTAAATCGAGCGTCC 59.784 37.037 0.00 0.00 0.00 4.79
4041 18819 6.249035 TCTTTTAAATCGAGCGTCCAAATT 57.751 33.333 0.00 0.00 0.00 1.82
4062 18840 4.720649 TTCAAACCGTTTTCACCATTGA 57.279 36.364 0.00 0.00 0.00 2.57
4070 18848 4.158384 CGTTTTCACCATTGAATTCCTCG 58.842 43.478 2.27 0.00 41.50 4.63
4113 18891 5.185454 AGATCGCATGTTGATAGGTTTTGA 58.815 37.500 0.00 0.00 0.00 2.69
4115 18893 4.323417 TCGCATGTTGATAGGTTTTGACT 58.677 39.130 0.00 0.00 0.00 3.41
4118 18896 6.021596 CGCATGTTGATAGGTTTTGACTAAC 58.978 40.000 0.00 0.00 0.00 2.34
4119 18897 6.348132 CGCATGTTGATAGGTTTTGACTAACA 60.348 38.462 0.00 0.00 0.00 2.41
4120 18898 7.538575 GCATGTTGATAGGTTTTGACTAACAT 58.461 34.615 0.00 0.00 37.83 2.71
4121 18899 8.028938 GCATGTTGATAGGTTTTGACTAACATT 58.971 33.333 0.00 0.00 35.90 2.71
4122 18900 9.912634 CATGTTGATAGGTTTTGACTAACATTT 57.087 29.630 0.00 0.00 35.90 2.32
4145 18923 4.873746 TTATGAAAAATCCAAACCGGCA 57.126 36.364 0.00 0.00 33.14 5.69
4146 18924 3.760580 ATGAAAAATCCAAACCGGCAA 57.239 38.095 0.00 0.00 33.14 4.52
4147 18925 2.827652 TGAAAAATCCAAACCGGCAAC 58.172 42.857 0.00 0.00 33.14 4.17
4149 18927 2.990066 AAAATCCAAACCGGCAACAA 57.010 40.000 0.00 0.00 33.14 2.83
4178 18965 2.059541 CCTTTCCGAAAGAGACACGAC 58.940 52.381 20.43 0.00 41.02 4.34
4212 18999 1.251251 AAGCAAATCTGTGCCTCCAC 58.749 50.000 0.00 0.00 46.14 4.02
4223 19010 2.301870 TGTGCCTCCACGAGAAGTAAAT 59.698 45.455 0.00 0.00 45.04 1.40
4226 19013 2.810650 CCTCCACGAGAAGTAAATCCG 58.189 52.381 0.00 0.00 0.00 4.18
4236 19023 0.179108 AGTAAATCCGTGCCTCTCGC 60.179 55.000 0.00 0.00 38.31 5.03
4313 19101 1.160137 AGCAAAATCGTGCCTCTCAC 58.840 50.000 0.00 0.00 46.14 3.51
4324 19112 2.616842 GTGCCTCTCACGAAAGGAAAAA 59.383 45.455 0.00 0.00 35.76 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.964420 TGATATTGTTTTTGCTAAGTACAAGC 57.036 30.769 12.06 12.06 40.50 4.01
101 103 6.128363 TGTGTCTATATTAGTCGCCATCGTAG 60.128 42.308 0.00 0.00 36.96 3.51
143 426 1.404851 GGCTTCCTTCTCGGTTCTCTG 60.405 57.143 0.00 0.00 0.00 3.35
155 438 1.878656 CTCGTGTCCTCGGCTTCCTT 61.879 60.000 0.00 0.00 0.00 3.36
210 494 8.958119 AGAACGTGCAATCTTTCCTATATTAA 57.042 30.769 0.00 0.00 0.00 1.40
211 495 8.826710 CAAGAACGTGCAATCTTTCCTATATTA 58.173 33.333 0.00 0.00 33.73 0.98
227 511 0.318762 AGGAGAGGACAAGAACGTGC 59.681 55.000 0.00 0.00 0.00 5.34
235 519 1.827792 TTTCCCCAAGGAGAGGACAA 58.172 50.000 0.00 0.00 45.19 3.18
330 3385 3.008704 GGCTCTTAAGTAGTTGACCCCAA 59.991 47.826 1.63 0.00 0.00 4.12
331 3386 2.570302 GGCTCTTAAGTAGTTGACCCCA 59.430 50.000 1.63 0.00 0.00 4.96
332 3387 2.570302 TGGCTCTTAAGTAGTTGACCCC 59.430 50.000 1.63 0.00 0.00 4.95
333 3388 3.261137 AGTGGCTCTTAAGTAGTTGACCC 59.739 47.826 1.63 0.00 0.00 4.46
334 3389 4.221041 AGAGTGGCTCTTAAGTAGTTGACC 59.779 45.833 1.63 0.00 37.60 4.02
335 3390 5.394224 AGAGTGGCTCTTAAGTAGTTGAC 57.606 43.478 1.63 0.00 37.60 3.18
340 3396 9.431887 CTATACTCTAGAGTGGCTCTTAAGTAG 57.568 40.741 31.47 14.32 41.50 2.57
341 3397 9.156940 TCTATACTCTAGAGTGGCTCTTAAGTA 57.843 37.037 31.47 10.44 41.50 2.24
350 3406 7.519032 ACAAAGATCTATACTCTAGAGTGGC 57.481 40.000 31.47 15.27 42.52 5.01
368 3424 8.134202 TCTCTCTACATCCATTTGTACAAAGA 57.866 34.615 24.22 17.53 33.32 2.52
370 3426 8.134202 TCTCTCTCTACATCCATTTGTACAAA 57.866 34.615 22.58 22.58 34.46 2.83
371 3427 7.615757 TCTCTCTCTCTACATCCATTTGTACAA 59.384 37.037 3.59 3.59 0.00 2.41
786 3844 4.974888 GTCTTTTAGTTGACTTCGACGTCT 59.025 41.667 21.04 5.68 35.42 4.18
828 3886 2.093447 CCTCAACGGGCTTCTCATACTT 60.093 50.000 0.00 0.00 0.00 2.24
846 3913 2.365617 TGGTTATGCGATCTCCTTCCTC 59.634 50.000 0.00 0.00 0.00 3.71
863 3930 2.614829 AGTACAAGTGAAGCGTGGTT 57.385 45.000 0.00 0.00 0.00 3.67
975 4113 4.124238 TGTACACTGGCTTGTTCACTTAC 58.876 43.478 0.00 0.00 0.00 2.34
1005 4145 0.914644 TCTCCTTCCTCATGGCCTTG 59.085 55.000 12.41 12.41 0.00 3.61
1140 4280 3.630312 GGGACTTACAAAGAGTTGTTGCA 59.370 43.478 0.00 0.00 46.01 4.08
1187 4361 5.413969 AAACCTAAACGTGTGTAAAGAGC 57.586 39.130 0.00 0.00 0.00 4.09
1188 4362 5.459762 TCGAAACCTAAACGTGTGTAAAGAG 59.540 40.000 0.00 0.00 0.00 2.85
1189 4363 5.347342 TCGAAACCTAAACGTGTGTAAAGA 58.653 37.500 0.00 0.00 0.00 2.52
1190 4364 5.232838 ACTCGAAACCTAAACGTGTGTAAAG 59.767 40.000 0.00 0.00 33.71 1.85
1191 4365 5.005586 CACTCGAAACCTAAACGTGTGTAAA 59.994 40.000 0.00 0.00 42.40 2.01
1192 4366 4.503734 CACTCGAAACCTAAACGTGTGTAA 59.496 41.667 0.00 0.00 42.40 2.41
1193 4367 4.043750 CACTCGAAACCTAAACGTGTGTA 58.956 43.478 0.00 0.00 42.40 2.90
1194 4368 2.861935 CACTCGAAACCTAAACGTGTGT 59.138 45.455 0.00 0.00 42.40 3.72
1195 4369 3.499072 CACTCGAAACCTAAACGTGTG 57.501 47.619 0.00 0.00 41.99 3.82
1196 4370 3.169355 ACACTCGAAACCTAAACGTGT 57.831 42.857 0.00 0.00 34.90 4.49
1197 4371 3.552699 TGAACACTCGAAACCTAAACGTG 59.447 43.478 0.00 0.00 0.00 4.49
1198 4372 3.784338 TGAACACTCGAAACCTAAACGT 58.216 40.909 0.00 0.00 0.00 3.99
1199 4373 4.143179 GGATGAACACTCGAAACCTAAACG 60.143 45.833 0.00 0.00 0.00 3.60
1222 4396 3.058224 TGATGGTGCACTCGTATAGATCG 60.058 47.826 17.98 0.00 0.00 3.69
1233 4407 2.484417 GGATCGAAGATGATGGTGCACT 60.484 50.000 17.98 0.00 45.12 4.40
1279 4454 7.220030 TCTCTTCATACTATGGGCAAAGAATC 58.780 38.462 0.00 0.00 0.00 2.52
1281 4456 6.560003 TCTCTTCATACTATGGGCAAAGAA 57.440 37.500 0.00 0.00 0.00 2.52
1383 4558 7.488322 TGTTTGATGTCCTAAAGTTTTGGAAG 58.512 34.615 18.60 0.00 0.00 3.46
1435 4610 0.459489 TTTGTGCAGTGGCTGAAACC 59.541 50.000 0.00 0.00 41.91 3.27
1446 4621 3.440173 ACCCTCGAATGTTATTTGTGCAG 59.560 43.478 0.00 0.00 0.00 4.41
1447 4622 3.417101 ACCCTCGAATGTTATTTGTGCA 58.583 40.909 0.00 0.00 0.00 4.57
1448 4623 4.412207 GAACCCTCGAATGTTATTTGTGC 58.588 43.478 0.00 0.00 0.00 4.57
1483 4658 4.095036 TGCACGTGTAGTTTGAACAATGAA 59.905 37.500 18.38 0.00 0.00 2.57
1499 4678 0.931662 GCTGCTCAAAAGTGCACGTG 60.932 55.000 12.28 12.28 35.20 4.49
1533 4765 2.639065 GCCACAAATAACATCCGAGGA 58.361 47.619 0.00 0.00 0.00 3.71
1554 4786 5.947503 TTTCATGTTCTTGCAAAGTTTCG 57.052 34.783 0.00 0.00 46.34 3.46
1573 4805 9.844790 TGAACATCAAACATGATCAAGTATTTC 57.155 29.630 3.64 2.64 29.75 2.17
1579 4811 8.583810 ACTTTTGAACATCAAACATGATCAAG 57.416 30.769 0.00 0.00 45.03 3.02
1713 5017 6.594159 GGTCATATACTTATTGTTAGCGCCAT 59.406 38.462 2.29 0.00 0.00 4.40
1751 5055 6.980397 GCCGACCAAATCTGAATTAAATGAAT 59.020 34.615 0.00 0.00 0.00 2.57
1785 5194 2.514824 GATGCGGGAGAAGGTGGC 60.515 66.667 0.00 0.00 0.00 5.01
1885 5396 2.847234 TGCCGGAGAAGGTGGTGT 60.847 61.111 5.05 0.00 0.00 4.16
1924 5435 1.577468 TTGTTCGCACTGACGATGTT 58.423 45.000 0.00 0.00 42.54 2.71
1927 5438 1.069906 GCTTTTGTTCGCACTGACGAT 60.070 47.619 0.00 0.00 42.54 3.73
1999 5542 7.862372 ACACAATGTCTGTTAGCATTAGTTTTG 59.138 33.333 0.00 0.00 35.47 2.44
2000 5543 7.940850 ACACAATGTCTGTTAGCATTAGTTTT 58.059 30.769 0.00 0.00 35.47 2.43
2119 6020 9.982291 GATGCACAAAAGAGTTATTAATTACGA 57.018 29.630 0.00 0.00 0.00 3.43
2880 14279 2.402564 ACCTATATCTGTGGCAGCTGT 58.597 47.619 16.64 0.00 0.00 4.40
2897 14296 1.687996 CCCAACACCACCTCAAAACCT 60.688 52.381 0.00 0.00 0.00 3.50
3029 17775 0.595588 CCTGCACCAACGTTGCATTA 59.404 50.000 22.93 7.91 37.95 1.90
3032 17778 2.439338 ACCTGCACCAACGTTGCA 60.439 55.556 22.93 17.38 37.04 4.08
3035 17781 1.885850 GACGACCTGCACCAACGTT 60.886 57.895 0.00 0.00 37.32 3.99
3349 18095 0.238289 GTCAAGGGCACAACATGTCG 59.762 55.000 0.00 0.00 31.63 4.35
3354 18100 1.315981 TTTGCGTCAAGGGCACAACA 61.316 50.000 0.00 0.00 40.71 3.33
3376 18122 0.807667 CGCTTCTCGGCAGCATTAGT 60.808 55.000 0.00 0.00 37.07 2.24
3416 18162 2.874701 CGTCCTTGATCCCATCATTGAC 59.125 50.000 0.00 6.12 39.39 3.18
3450 18196 1.484653 TGCGGGTATCAGCAACATAGT 59.515 47.619 0.00 0.00 40.78 2.12
3476 18222 3.935828 TGATTACAATTGATGACCGCGAA 59.064 39.130 13.59 0.00 0.00 4.70
3498 18244 8.621286 ACAAGTAGACTCATGTTCGAAAATTTT 58.379 29.630 2.28 2.28 0.00 1.82
3533 18279 3.119849 GCGAGGTGTGCATTATTGAAACT 60.120 43.478 0.00 0.00 0.00 2.66
3543 18289 1.165270 GTTTTAGGCGAGGTGTGCAT 58.835 50.000 0.00 0.00 0.00 3.96
3566 18312 9.533253 AAACAACATCTCCTGAGTTTTTATTTG 57.467 29.630 0.00 0.00 35.00 2.32
3576 18322 4.994852 TCCGTTAAAACAACATCTCCTGAG 59.005 41.667 0.00 0.00 0.00 3.35
3580 18326 6.500910 ACTTTTCCGTTAAAACAACATCTCC 58.499 36.000 0.00 0.00 33.49 3.71
3636 18385 5.050159 GGTGCTTTCACATTGGTTGAATTTC 60.050 40.000 0.00 0.00 44.87 2.17
3645 18394 0.890683 GGGAGGTGCTTTCACATTGG 59.109 55.000 0.00 0.00 44.87 3.16
3712 18461 4.901197 TGTTAGCATAACCTTGGTCTCA 57.099 40.909 0.00 0.00 0.00 3.27
3713 18462 5.001232 TGTTGTTAGCATAACCTTGGTCTC 58.999 41.667 0.00 0.00 0.00 3.36
3714 18463 4.980573 TGTTGTTAGCATAACCTTGGTCT 58.019 39.130 0.00 0.00 0.00 3.85
3715 18464 5.335661 CCTTGTTGTTAGCATAACCTTGGTC 60.336 44.000 0.00 0.00 0.00 4.02
3716 18465 4.522789 CCTTGTTGTTAGCATAACCTTGGT 59.477 41.667 0.00 0.00 0.00 3.67
3717 18466 4.764823 TCCTTGTTGTTAGCATAACCTTGG 59.235 41.667 0.00 0.00 0.00 3.61
3719 18468 6.969993 TTTCCTTGTTGTTAGCATAACCTT 57.030 33.333 0.00 0.00 0.00 3.50
3744 18516 8.352942 CAGGCTAGACTTGTTATTTCTTTTGTT 58.647 33.333 0.00 0.00 0.00 2.83
3745 18517 7.719633 TCAGGCTAGACTTGTTATTTCTTTTGT 59.280 33.333 0.00 0.00 0.00 2.83
3779 18551 3.108376 AGGCCCTGGTTTGTTTGTTTTA 58.892 40.909 0.00 0.00 0.00 1.52
3784 18556 1.069596 GCAGGCCCTGGTTTGTTTG 59.930 57.895 13.78 0.00 31.21 2.93
3785 18557 2.140138 GGCAGGCCCTGGTTTGTTT 61.140 57.895 13.78 0.00 31.21 2.83
3786 18558 2.524148 GGCAGGCCCTGGTTTGTT 60.524 61.111 13.78 0.00 31.21 2.83
3798 18570 2.127271 TTCATGTGTGTATGGGCAGG 57.873 50.000 0.00 0.00 0.00 4.85
3810 18582 3.005554 ACGGAGATGAGCTTTTCATGTG 58.994 45.455 0.00 0.00 46.51 3.21
3814 18586 1.623311 TGGACGGAGATGAGCTTTTCA 59.377 47.619 0.00 0.00 40.85 2.69
3893 18670 5.186198 CGGGTGATCTTTGGAAGAATTACT 58.814 41.667 0.00 0.00 41.63 2.24
3897 18674 2.290896 TGCGGGTGATCTTTGGAAGAAT 60.291 45.455 0.00 0.00 41.63 2.40
3899 18676 0.690192 TGCGGGTGATCTTTGGAAGA 59.310 50.000 0.00 0.00 42.69 2.87
3903 18680 1.002134 AGGTGCGGGTGATCTTTGG 60.002 57.895 0.00 0.00 0.00 3.28
3904 18681 1.026718 GGAGGTGCGGGTGATCTTTG 61.027 60.000 0.00 0.00 0.00 2.77
3914 18691 2.672996 CAACTTGGGGAGGTGCGG 60.673 66.667 0.00 0.00 36.02 5.69
3925 18702 2.355009 GCCACTTGCCGCAACTTG 60.355 61.111 0.38 2.46 0.00 3.16
3934 18711 2.125832 ATGCAATGCGCCACTTGC 60.126 55.556 24.21 24.21 46.19 4.01
3956 18733 0.033781 CCCATGTTGCAACAAGTGGG 59.966 55.000 38.35 38.35 46.83 4.61
4011 18789 7.095144 TGGACGCTCGATTTAAAAGATAAAACA 60.095 33.333 0.00 0.00 0.00 2.83
4016 18794 6.971527 TTTGGACGCTCGATTTAAAAGATA 57.028 33.333 0.00 0.00 0.00 1.98
4021 18799 6.003234 TGAAATTTGGACGCTCGATTTAAA 57.997 33.333 0.00 0.00 0.00 1.52
4027 18805 2.031508 GGTTTGAAATTTGGACGCTCGA 60.032 45.455 0.00 0.00 0.00 4.04
4030 18808 1.679153 ACGGTTTGAAATTTGGACGCT 59.321 42.857 0.00 0.00 0.00 5.07
4032 18810 4.563184 TGAAAACGGTTTGAAATTTGGACG 59.437 37.500 1.45 0.00 0.00 4.79
4036 18814 5.786401 TGGTGAAAACGGTTTGAAATTTG 57.214 34.783 1.45 0.00 0.00 2.32
4041 18819 4.720649 TCAATGGTGAAAACGGTTTGAA 57.279 36.364 1.45 0.00 0.00 2.69
4070 18848 6.036735 CGATCTAGATTAGAAGATCTCGACCC 59.963 46.154 6.70 0.00 43.90 4.46
4084 18862 7.468141 ACCTATCAACATGCGATCTAGATTA 57.532 36.000 6.70 0.00 0.00 1.75
4087 18865 5.791336 AACCTATCAACATGCGATCTAGA 57.209 39.130 0.00 0.00 0.00 2.43
4088 18866 6.479990 TCAAAACCTATCAACATGCGATCTAG 59.520 38.462 1.66 0.00 0.00 2.43
4121 18899 6.055588 TGCCGGTTTGGATTTTTCATAAAAA 58.944 32.000 1.90 0.47 42.00 1.94
4122 18900 5.611374 TGCCGGTTTGGATTTTTCATAAAA 58.389 33.333 1.90 0.00 42.00 1.52
4123 18901 5.215252 TGCCGGTTTGGATTTTTCATAAA 57.785 34.783 1.90 0.00 42.00 1.40
4124 18902 4.873746 TGCCGGTTTGGATTTTTCATAA 57.126 36.364 1.90 0.00 42.00 1.90
4125 18903 4.039245 TGTTGCCGGTTTGGATTTTTCATA 59.961 37.500 1.90 0.00 42.00 2.15
4126 18904 3.181461 TGTTGCCGGTTTGGATTTTTCAT 60.181 39.130 1.90 0.00 42.00 2.57
4127 18905 2.168521 TGTTGCCGGTTTGGATTTTTCA 59.831 40.909 1.90 0.00 42.00 2.69
4128 18906 2.827652 TGTTGCCGGTTTGGATTTTTC 58.172 42.857 1.90 0.00 42.00 2.29
4163 18950 1.409412 CACAGTCGTGTCTCTTTCGG 58.591 55.000 0.00 0.00 38.41 4.30
4172 18959 2.645567 CGAGAGGCACAGTCGTGT 59.354 61.111 0.00 0.00 45.50 4.49
4191 18978 2.036346 GTGGAGGCACAGATTTGCTTTT 59.964 45.455 0.00 0.00 42.56 2.27
4192 18979 1.615392 GTGGAGGCACAGATTTGCTTT 59.385 47.619 0.00 0.00 42.56 3.51
4212 18999 2.159226 AGAGGCACGGATTTACTTCTCG 60.159 50.000 0.00 0.00 0.00 4.04
4249 19036 2.288458 TCTCGAAAACGGAAAAATGCGT 59.712 40.909 0.00 0.00 0.00 5.24
4250 19037 2.902484 CTCTCGAAAACGGAAAAATGCG 59.098 45.455 0.00 0.00 0.00 4.73
4251 19038 2.656897 GCTCTCGAAAACGGAAAAATGC 59.343 45.455 0.00 0.00 0.00 3.56
4252 19039 3.234386 GGCTCTCGAAAACGGAAAAATG 58.766 45.455 0.00 0.00 0.00 2.32
4253 19040 2.882137 TGGCTCTCGAAAACGGAAAAAT 59.118 40.909 0.00 0.00 0.00 1.82
4256 19043 1.223187 GTGGCTCTCGAAAACGGAAA 58.777 50.000 0.00 0.00 0.00 3.13
4259 19046 0.600255 ACTGTGGCTCTCGAAAACGG 60.600 55.000 0.00 0.00 0.00 4.44
4260 19047 1.070577 CAACTGTGGCTCTCGAAAACG 60.071 52.381 0.00 0.00 0.00 3.60
4276 19064 0.946221 CTTTCGCGAGAGGCACAACT 60.946 55.000 18.35 0.00 43.84 3.16
4279 19067 2.738521 GCTTTCGCGAGAGGCACA 60.739 61.111 25.84 0.00 43.84 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.