Multiple sequence alignment - TraesCS6A01G418800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G418800 chr6A 100.000 7916 0 0 1 7916 616744756 616736841 0.000000e+00 14619.0
1 TraesCS6A01G418800 chr6A 97.959 245 2 1 4860 5101 616780925 616781169 9.500000e-114 422.0
2 TraesCS6A01G418800 chr6A 99.281 139 1 0 5099 5237 616793385 616793523 1.320000e-62 252.0
3 TraesCS6A01G418800 chr6A 91.200 125 9 2 3592 3716 579148325 579148203 1.370000e-37 169.0
4 TraesCS6A01G418800 chr6A 92.308 117 9 0 3597 3713 542194379 542194263 4.910000e-37 167.0
5 TraesCS6A01G418800 chr6A 88.372 86 6 2 7280 7364 562709362 562709444 5.050000e-17 100.0
6 TraesCS6A01G418800 chr6A 88.235 85 7 1 7280 7364 572982418 572982499 1.820000e-16 99.0
7 TraesCS6A01G418800 chr6D 92.390 2050 73 30 3705 5716 473366793 473368797 0.000000e+00 2844.0
8 TraesCS6A01G418800 chr6D 94.486 1324 21 16 5827 7125 473372752 473374048 0.000000e+00 1993.0
9 TraesCS6A01G418800 chr6D 86.308 1731 147 53 1877 3599 473365145 473366793 0.000000e+00 1801.0
10 TraesCS6A01G418800 chr6D 94.095 779 36 4 7138 7916 473374210 473374978 0.000000e+00 1175.0
11 TraesCS6A01G418800 chr6D 91.967 610 15 8 3778 4372 457763655 457764245 0.000000e+00 824.0
12 TraesCS6A01G418800 chr6D 82.849 344 42 11 2044 2379 457763326 457763660 7.770000e-75 292.0
13 TraesCS6A01G418800 chr6D 81.105 344 56 9 7385 7724 340168525 340168187 4.710000e-67 267.0
14 TraesCS6A01G418800 chr6D 78.889 450 49 22 800 1242 473363724 473364134 6.090000e-66 263.0
15 TraesCS6A01G418800 chr6D 89.157 166 8 6 1613 1768 473364845 473365010 1.740000e-46 198.0
16 TraesCS6A01G418800 chr6D 84.043 188 12 4 1599 1768 457762994 457763181 1.770000e-36 165.0
17 TraesCS6A01G418800 chr6D 86.598 97 8 3 7271 7365 146072815 146072908 1.410000e-17 102.0
18 TraesCS6A01G418800 chr6D 87.640 89 7 4 7280 7367 249956964 249956879 5.050000e-17 100.0
19 TraesCS6A01G418800 chr6D 86.517 89 8 4 7277 7364 438275614 438275699 2.350000e-15 95.3
20 TraesCS6A01G418800 chr6D 86.047 86 8 2 7280 7364 20145808 20145726 1.090000e-13 89.8
21 TraesCS6A01G418800 chr6D 90.741 54 4 1 7294 7346 411549965 411549912 3.960000e-08 71.3
22 TraesCS6A01G418800 chr6B 88.643 1761 117 53 1871 3596 718770360 718772072 0.000000e+00 2067.0
23 TraesCS6A01G418800 chr6B 92.529 870 26 16 4812 5660 718773310 718774161 0.000000e+00 1210.0
24 TraesCS6A01G418800 chr6B 91.352 636 27 16 4151 4774 718772685 718773304 0.000000e+00 845.0
25 TraesCS6A01G418800 chr6B 89.706 476 17 4 3705 4157 718772077 718772543 5.330000e-161 579.0
26 TraesCS6A01G418800 chr6B 82.143 700 37 32 6297 6927 718774815 718775495 3.270000e-143 520.0
27 TraesCS6A01G418800 chr6B 89.453 256 11 5 5816 6069 718774248 718774489 7.710000e-80 309.0
28 TraesCS6A01G418800 chr6B 94.180 189 6 2 6074 6257 718774616 718774804 4.680000e-72 283.0
29 TraesCS6A01G418800 chr6B 87.500 184 9 8 1599 1768 718770136 718770319 4.840000e-47 200.0
30 TraesCS6A01G418800 chr6B 92.241 116 9 0 3593 3708 26156476 26156361 1.770000e-36 165.0
31 TraesCS6A01G418800 chr6B 95.789 95 3 1 5690 5783 718774160 718774254 1.380000e-32 152.0
32 TraesCS6A01G418800 chr6B 89.535 86 5 2 7280 7364 55999849 55999767 1.090000e-18 106.0
33 TraesCS6A01G418800 chr4B 91.115 1542 93 20 2065 3599 613041820 613040316 0.000000e+00 2049.0
34 TraesCS6A01G418800 chr4B 89.795 1509 72 28 3705 5191 613040316 613038868 0.000000e+00 1858.0
35 TraesCS6A01G418800 chr4B 90.173 519 29 10 4158 4665 613082238 613081731 0.000000e+00 656.0
36 TraesCS6A01G418800 chr4B 92.361 432 24 3 5239 5670 613037663 613037241 2.440000e-169 606.0
37 TraesCS6A01G418800 chr4B 79.224 876 49 37 682 1555 613049506 613048762 3.320000e-133 486.0
38 TraesCS6A01G418800 chr4B 87.626 396 25 5 3781 4157 613082759 613082369 9.430000e-119 438.0
39 TraesCS6A01G418800 chr4B 88.889 225 15 5 5051 5270 613051625 613051406 1.310000e-67 268.0
40 TraesCS6A01G418800 chr4B 87.861 173 13 4 1599 1763 613042480 613042308 6.270000e-46 196.0
41 TraesCS6A01G418800 chr4B 86.486 185 10 2 1599 1768 613087952 613087768 1.050000e-43 189.0
42 TraesCS6A01G418800 chr4B 88.235 119 12 2 4756 4874 613081617 613081501 2.980000e-29 141.0
43 TraesCS6A01G418800 chr4B 75.781 256 43 9 3771 4020 628656381 628656623 2.340000e-20 111.0
44 TraesCS6A01G418800 chr7D 88.132 1761 81 42 4154 5846 16324312 16322612 0.000000e+00 1977.0
45 TraesCS6A01G418800 chr7D 88.396 1353 131 21 2065 3397 16326345 16324999 0.000000e+00 1605.0
46 TraesCS6A01G418800 chr7D 87.773 687 74 8 1 686 33994569 33995246 0.000000e+00 795.0
47 TraesCS6A01G418800 chr7D 82.115 1012 72 44 5983 6935 16322512 16321551 0.000000e+00 765.0
48 TraesCS6A01G418800 chr7D 91.266 458 16 3 3715 4157 16324901 16324453 3.160000e-168 603.0
49 TraesCS6A01G418800 chr7D 79.217 332 55 4 7390 7720 597088235 597088553 1.340000e-52 219.0
50 TraesCS6A01G418800 chr7D 88.024 167 11 5 1609 1766 16327046 16326880 1.050000e-43 189.0
51 TraesCS6A01G418800 chr7D 85.417 96 10 2 7271 7365 567719809 567719901 6.540000e-16 97.1
52 TraesCS6A01G418800 chr7D 91.489 47 0 4 1539 1585 16327271 16327229 2.390000e-05 62.1
53 TraesCS6A01G418800 chr4D 89.420 690 58 9 1 684 400679739 400680419 0.000000e+00 856.0
54 TraesCS6A01G418800 chr4D 87.681 690 71 11 1 689 39198276 39198952 0.000000e+00 791.0
55 TraesCS6A01G418800 chr4D 82.721 272 38 4 7413 7684 434960025 434959763 4.780000e-57 233.0
56 TraesCS6A01G418800 chr4D 86.667 90 6 4 7280 7367 403409612 403409527 2.350000e-15 95.3
57 TraesCS6A01G418800 chr4D 85.227 88 4 8 7272 7354 101653209 101653292 1.830000e-11 82.4
58 TraesCS6A01G418800 chr3D 88.841 690 66 9 1 688 111845998 111846678 0.000000e+00 837.0
59 TraesCS6A01G418800 chr3D 88.501 687 66 6 1 687 438056176 438056849 0.000000e+00 819.0
60 TraesCS6A01G418800 chr3D 81.579 304 52 1 7385 7684 169739756 169740059 1.710000e-61 248.0
61 TraesCS6A01G418800 chr3D 88.372 86 6 2 7280 7364 42630764 42630682 5.050000e-17 100.0
62 TraesCS6A01G418800 chrUn 87.537 674 74 8 1 674 60968447 60967784 0.000000e+00 771.0
63 TraesCS6A01G418800 chr4A 86.801 697 76 11 1 696 588598645 588599326 0.000000e+00 763.0
64 TraesCS6A01G418800 chr4A 83.399 253 29 12 7446 7690 690954879 690955126 1.030000e-53 222.0
65 TraesCS6A01G418800 chr4A 95.455 110 5 0 3598 3707 1520075 1519966 8.160000e-40 176.0
66 TraesCS6A01G418800 chr1D 86.522 690 83 8 1 687 52362574 52363256 0.000000e+00 750.0
67 TraesCS6A01G418800 chr1D 86.608 687 77 9 1 687 480867306 480867977 0.000000e+00 745.0
68 TraesCS6A01G418800 chr1D 77.291 251 35 6 7408 7658 326092584 326092812 2.320000e-25 128.0
69 TraesCS6A01G418800 chr1D 88.372 86 6 2 7280 7364 93124792 93124874 5.050000e-17 100.0
70 TraesCS6A01G418800 chr1D 90.789 76 3 4 7280 7354 216728478 216728406 1.820000e-16 99.0
71 TraesCS6A01G418800 chr1D 91.667 72 2 4 7284 7354 54972988 54972920 6.540000e-16 97.1
72 TraesCS6A01G418800 chr1D 89.796 49 5 0 7568 7616 413586510 413586558 6.630000e-06 63.9
73 TraesCS6A01G418800 chr5B 80.720 389 61 6 7384 7759 44461095 44461482 2.790000e-74 291.0
74 TraesCS6A01G418800 chr5B 93.750 112 7 0 3598 3709 36727556 36727667 1.370000e-37 169.0
75 TraesCS6A01G418800 chr7A 82.492 297 41 10 7385 7676 558085530 558085820 4.740000e-62 250.0
76 TraesCS6A01G418800 chr7A 99.057 106 1 0 3598 3703 28470977 28470872 2.920000e-44 191.0
77 TraesCS6A01G418800 chr7A 96.296 108 4 0 3595 3702 729073217 729073324 2.270000e-40 178.0
78 TraesCS6A01G418800 chr2B 79.032 372 69 9 7410 7776 596895540 596895173 6.140000e-61 246.0
79 TraesCS6A01G418800 chr2B 80.769 130 19 4 7385 7508 5383147 5383018 6.540000e-16 97.1
80 TraesCS6A01G418800 chr1A 85.897 234 14 6 1871 2100 367000079 367000297 1.720000e-56 231.0
81 TraesCS6A01G418800 chr1A 93.197 147 10 0 1652 1798 366999661 366999807 4.810000e-52 217.0
82 TraesCS6A01G418800 chr1A 80.317 315 35 11 1157 1465 366990281 366990574 6.220000e-51 213.0
83 TraesCS6A01G418800 chr1A 88.312 77 5 2 7280 7355 108963087 108963160 1.090000e-13 89.8
84 TraesCS6A01G418800 chr1A 97.778 45 0 1 1817 1861 366999857 366999900 8.520000e-10 76.8
85 TraesCS6A01G418800 chr5A 85.106 188 26 2 7386 7571 327906981 327907168 2.920000e-44 191.0
86 TraesCS6A01G418800 chr5A 80.498 241 38 5 7488 7720 42249283 42249522 8.160000e-40 176.0
87 TraesCS6A01G418800 chr2A 93.043 115 7 1 3597 3710 158588874 158588988 4.910000e-37 167.0
88 TraesCS6A01G418800 chr5D 77.700 287 50 11 7398 7678 457563756 457563478 6.360000e-36 163.0
89 TraesCS6A01G418800 chr5D 85.393 89 9 2 7280 7367 210384709 210384624 1.090000e-13 89.8
90 TraesCS6A01G418800 chr2D 91.525 118 10 0 3591 3708 637342559 637342676 6.360000e-36 163.0
91 TraesCS6A01G418800 chr2D 76.667 300 49 14 7381 7675 117395171 117395454 6.400000e-31 147.0
92 TraesCS6A01G418800 chr1B 77.739 283 51 10 7385 7662 649285268 649284993 6.360000e-36 163.0
93 TraesCS6A01G418800 chr7B 92.233 103 8 0 1661 1763 132435569 132435671 6.400000e-31 147.0
94 TraesCS6A01G418800 chr3B 88.372 86 6 2 7280 7364 265853354 265853272 5.050000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G418800 chr6A 616736841 616744756 7915 True 14619.000000 14619 100.000000 1 7916 1 chr6A.!!$R3 7915
1 TraesCS6A01G418800 chr6D 473363724 473374978 11254 False 1379.000000 2844 89.220833 800 7916 6 chr6D.!!$F4 7116
2 TraesCS6A01G418800 chr6D 457762994 457764245 1251 False 427.000000 824 86.286333 1599 4372 3 chr6D.!!$F3 2773
3 TraesCS6A01G418800 chr6B 718770136 718775495 5359 False 685.000000 2067 90.143889 1599 6927 9 chr6B.!!$F1 5328
4 TraesCS6A01G418800 chr4B 613037241 613042480 5239 True 1177.250000 2049 90.283000 1599 5670 4 chr4B.!!$R2 4071
5 TraesCS6A01G418800 chr4B 613081501 613082759 1258 True 411.666667 656 88.678000 3781 4874 3 chr4B.!!$R4 1093
6 TraesCS6A01G418800 chr4B 613048762 613051625 2863 True 377.000000 486 84.056500 682 5270 2 chr4B.!!$R3 4588
7 TraesCS6A01G418800 chr7D 16321551 16327271 5720 True 866.850000 1977 88.237000 1539 6935 6 chr7D.!!$R1 5396
8 TraesCS6A01G418800 chr7D 33994569 33995246 677 False 795.000000 795 87.773000 1 686 1 chr7D.!!$F1 685
9 TraesCS6A01G418800 chr4D 400679739 400680419 680 False 856.000000 856 89.420000 1 684 1 chr4D.!!$F3 683
10 TraesCS6A01G418800 chr4D 39198276 39198952 676 False 791.000000 791 87.681000 1 689 1 chr4D.!!$F1 688
11 TraesCS6A01G418800 chr3D 111845998 111846678 680 False 837.000000 837 88.841000 1 688 1 chr3D.!!$F1 687
12 TraesCS6A01G418800 chr3D 438056176 438056849 673 False 819.000000 819 88.501000 1 687 1 chr3D.!!$F3 686
13 TraesCS6A01G418800 chrUn 60967784 60968447 663 True 771.000000 771 87.537000 1 674 1 chrUn.!!$R1 673
14 TraesCS6A01G418800 chr4A 588598645 588599326 681 False 763.000000 763 86.801000 1 696 1 chr4A.!!$F1 695
15 TraesCS6A01G418800 chr1D 52362574 52363256 682 False 750.000000 750 86.522000 1 687 1 chr1D.!!$F1 686
16 TraesCS6A01G418800 chr1D 480867306 480867977 671 False 745.000000 745 86.608000 1 687 1 chr1D.!!$F5 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
813 2253 0.178953 CCATCCCATCCCATCCCAAC 60.179 60.000 0.00 0.00 0.00 3.77 F
1208 2674 0.036448 CTGCTATGCCCCTCTGGATG 59.964 60.000 0.00 0.00 35.39 3.51 F
1361 2896 0.109132 GCCAAGGATTTCACAAGGCG 60.109 55.000 0.00 0.00 0.00 5.52 F
1809 3994 0.658244 TTGTCGTTCGTTCGAGACCG 60.658 55.000 10.47 7.87 40.52 4.79 F
2013 4240 0.677288 CATATGGGACGGACGCCTTA 59.323 55.000 0.00 0.00 0.00 2.69 F
2014 4241 0.966920 ATATGGGACGGACGCCTTAG 59.033 55.000 0.00 0.00 0.00 2.18 F
2015 4242 1.111116 TATGGGACGGACGCCTTAGG 61.111 60.000 0.00 0.00 0.00 2.69 F
2301 4538 1.134159 ACAGGATCCATCTGCTCAAGC 60.134 52.381 15.82 0.00 42.50 4.01 F
2303 4540 1.417145 AGGATCCATCTGCTCAAGCTC 59.583 52.381 15.82 0.00 42.66 4.09 F
3618 5910 1.489230 ACTCCCTCCGTTCACTTTTGT 59.511 47.619 0.00 0.00 0.00 2.83 F
4910 7599 1.066430 GGTCCAGAAGGTTGCGATGTA 60.066 52.381 0.00 0.00 35.89 2.29 F
5382 9244 4.342378 TCCGGCCAGCTTCATATATAGATC 59.658 45.833 2.24 0.00 0.00 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1994 4221 0.677288 TAAGGCGTCCGTCCCATATG 59.323 55.000 0.00 0.0 0.00 1.78 R
2059 4288 0.679002 ATGCAGCAGGGATGTGTGTC 60.679 55.000 0.00 0.0 0.00 3.67 R
2355 4593 1.618861 CAACGCGTAGAGGAGAGTTG 58.381 55.000 14.46 0.0 40.52 3.16 R
3687 5979 1.428869 ACTGCTCCCTCTGTTCACTT 58.571 50.000 0.00 0.0 0.00 3.16 R
3904 6212 2.099921 CCACAACCGACCAATGAACAAA 59.900 45.455 0.00 0.0 0.00 2.83 R
3918 6226 2.615493 CCTACACCATGAGTCCACAACC 60.615 54.545 0.00 0.0 0.00 3.77 R
4299 6910 6.742109 ACAAGGTCAAAAAGATCAATGAGTG 58.258 36.000 0.00 0.0 0.00 3.51 R
4522 7145 2.467826 GCCTTGTCGAGCAGCCATC 61.468 63.158 0.00 0.0 0.00 3.51 R
4722 7345 6.801575 TGATGACGCATTTAGTAGTATGTCA 58.198 36.000 0.00 0.0 39.18 3.58 R
5506 9368 0.385390 GTGTTGTCAAACCAGCCCAG 59.615 55.000 0.00 0.0 35.25 4.45 R
5777 9694 0.527113 TGCATGGCAGGTTCAATTCG 59.473 50.000 0.00 0.0 33.32 3.34 R
7523 15717 0.652592 CTCCGACGGTTTCATGCATC 59.347 55.000 14.79 0.0 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 1.747355 GTCCTCGTCTCCCAATAACGA 59.253 52.381 0.00 0.00 42.59 3.85
71 72 3.865700 CATCCGCGCTGATGTACTA 57.134 52.632 27.66 0.00 37.85 1.82
114 115 0.692756 TAGGGCCGATGGTGAATGGA 60.693 55.000 0.00 0.00 0.00 3.41
229 235 2.047655 CCTTGCGGCCGTAGTTCA 60.048 61.111 28.70 13.14 0.00 3.18
285 296 1.058428 TCGAGGACGGGGAGAGGATA 61.058 60.000 0.00 0.00 40.21 2.59
364 378 3.673484 GGACGACGACCGGTCCAA 61.673 66.667 28.52 0.00 42.99 3.53
376 390 1.076705 GGTCCAAGGCTTCCCCATC 60.077 63.158 0.00 0.00 35.39 3.51
448 462 0.373370 GCGTGCGCATTAATGTCAGA 59.627 50.000 15.91 0.00 41.49 3.27
450 464 1.393196 CGTGCGCATTAATGTCAGACA 59.607 47.619 15.91 5.50 0.00 3.41
626 640 2.982130 CTGGGCCGTCTAGCTTGT 59.018 61.111 0.00 0.00 0.00 3.16
657 672 4.024545 AAACGAACGGGGCCGGAT 62.025 61.111 18.95 5.70 44.69 4.18
664 679 1.423794 AACGGGGCCGGATGGAATAT 61.424 55.000 18.95 0.00 44.69 1.28
667 682 1.678970 GGGCCGGATGGAATATGGC 60.679 63.158 5.05 0.00 43.79 4.40
701 2140 0.462047 GGCCTTAGATGGTCACACCG 60.462 60.000 0.00 0.00 42.58 4.94
754 2194 0.798776 CGTGGTTGAGTTGGAGATGC 59.201 55.000 0.00 0.00 0.00 3.91
783 2223 3.192633 GCTTTTATTCACGTGGGTCCATT 59.807 43.478 17.00 0.00 0.00 3.16
785 2225 2.702592 TATTCACGTGGGTCCATTCC 57.297 50.000 17.00 0.00 0.00 3.01
797 2237 1.430464 GTCCATTCCATCCCATCCCAT 59.570 52.381 0.00 0.00 0.00 4.00
813 2253 0.178953 CCATCCCATCCCATCCCAAC 60.179 60.000 0.00 0.00 0.00 3.77
815 2255 0.855598 ATCCCATCCCATCCCAACAG 59.144 55.000 0.00 0.00 0.00 3.16
817 2257 0.184451 CCCATCCCATCCCAACAGAG 59.816 60.000 0.00 0.00 0.00 3.35
819 2259 1.142465 CCATCCCATCCCAACAGAGAG 59.858 57.143 0.00 0.00 0.00 3.20
821 2261 1.871418 TCCCATCCCAACAGAGAGAG 58.129 55.000 0.00 0.00 0.00 3.20
822 2262 1.362584 TCCCATCCCAACAGAGAGAGA 59.637 52.381 0.00 0.00 0.00 3.10
825 2265 2.694628 CCATCCCAACAGAGAGAGAGAG 59.305 54.545 0.00 0.00 0.00 3.20
826 2266 2.523325 TCCCAACAGAGAGAGAGAGG 57.477 55.000 0.00 0.00 0.00 3.69
834 2274 3.529734 ACAGAGAGAGAGAGGGGTTATGA 59.470 47.826 0.00 0.00 0.00 2.15
862 2302 2.174639 TCATTAGTGGGCTATGTTGGGG 59.825 50.000 0.00 0.00 0.00 4.96
951 2416 4.467084 CCATAGGTGCGGTGCGGT 62.467 66.667 0.00 0.00 0.00 5.68
952 2417 3.195002 CATAGGTGCGGTGCGGTG 61.195 66.667 0.00 0.00 0.00 4.94
993 2458 9.602568 CATCATTATCCATCCTCTGAATTCTAG 57.397 37.037 7.05 4.36 0.00 2.43
1105 2571 1.654954 CCGCCGCTCTGTACTGTACT 61.655 60.000 17.98 0.00 0.00 2.73
1106 2572 0.523546 CGCCGCTCTGTACTGTACTG 60.524 60.000 17.98 16.98 0.00 2.74
1107 2573 0.526662 GCCGCTCTGTACTGTACTGT 59.473 55.000 17.98 10.46 0.00 3.55
1108 2574 1.741706 GCCGCTCTGTACTGTACTGTA 59.258 52.381 17.98 8.40 0.00 2.74
1109 2575 2.477525 GCCGCTCTGTACTGTACTGTAC 60.478 54.545 27.19 27.19 42.10 2.90
1110 2576 3.008330 CCGCTCTGTACTGTACTGTACT 58.992 50.000 30.96 5.78 42.22 2.73
1111 2577 3.181509 CCGCTCTGTACTGTACTGTACTG 60.182 52.174 30.96 29.74 42.22 2.74
1112 2578 3.436015 CGCTCTGTACTGTACTGTACTGT 59.564 47.826 30.96 26.40 42.22 3.55
1113 2579 4.628766 CGCTCTGTACTGTACTGTACTGTA 59.371 45.833 30.96 24.76 42.22 2.74
1155 2621 0.473694 TGGAGCGGATGGGGATACAT 60.474 55.000 0.00 0.00 39.74 2.29
1156 2622 1.203250 TGGAGCGGATGGGGATACATA 60.203 52.381 0.00 0.00 39.74 2.29
1157 2623 2.119495 GGAGCGGATGGGGATACATAT 58.881 52.381 0.00 0.00 39.74 1.78
1158 2624 3.305720 GGAGCGGATGGGGATACATATA 58.694 50.000 0.00 0.00 39.74 0.86
1159 2625 3.069729 GGAGCGGATGGGGATACATATAC 59.930 52.174 0.00 0.00 39.74 1.47
1160 2626 3.704566 GAGCGGATGGGGATACATATACA 59.295 47.826 0.00 0.00 39.74 2.29
1204 2670 2.280660 CGCTGCTATGCCCCTCTG 60.281 66.667 0.00 0.00 0.00 3.35
1205 2671 2.112718 GCTGCTATGCCCCTCTGG 59.887 66.667 0.00 0.00 37.09 3.86
1206 2672 2.446848 GCTGCTATGCCCCTCTGGA 61.447 63.158 0.00 0.00 35.39 3.86
1208 2674 0.036448 CTGCTATGCCCCTCTGGATG 59.964 60.000 0.00 0.00 35.39 3.51
1209 2675 1.377994 GCTATGCCCCTCTGGATGG 59.622 63.158 0.00 0.00 35.39 3.51
1210 2676 1.377994 CTATGCCCCTCTGGATGGC 59.622 63.158 0.00 0.00 45.56 4.40
1211 2677 2.134630 CTATGCCCCTCTGGATGGCC 62.135 65.000 0.00 0.00 44.72 5.36
1214 2680 2.842058 CCCCTCTGGATGGCCATC 59.158 66.667 33.90 33.90 44.91 3.51
1216 2682 2.446848 CCCTCTGGATGGCCATCGT 61.447 63.158 33.95 8.54 44.91 3.73
1218 2684 1.406065 CCTCTGGATGGCCATCGTCT 61.406 60.000 33.95 7.68 44.91 4.18
1220 2686 0.397675 TCTGGATGGCCATCGTCTCT 60.398 55.000 33.95 6.00 44.91 3.10
1320 2825 0.111639 TAGGAACCACCAAGCCCAAC 59.888 55.000 0.00 0.00 42.04 3.77
1361 2896 0.109132 GCCAAGGATTTCACAAGGCG 60.109 55.000 0.00 0.00 0.00 5.52
1384 2919 1.212490 CGCACCGGCACATCAATTT 59.788 52.632 0.00 0.00 41.24 1.82
1426 3010 1.706575 TCCAAGGAGGAGGAGGAGG 59.293 63.158 0.00 0.00 43.07 4.30
1427 3011 0.855855 TCCAAGGAGGAGGAGGAGGA 60.856 60.000 0.00 0.00 43.07 3.71
1495 3079 9.543783 CCTTGTATGGGACTTTTAAGATACTAC 57.456 37.037 0.00 0.00 0.00 2.73
1515 3185 6.398918 ACTACTAAGGATACACACTTGCTTG 58.601 40.000 0.00 0.00 41.41 4.01
1527 3197 7.545362 ACACACTTGCTTGCTAATAAGATAG 57.455 36.000 0.00 0.00 0.00 2.08
1528 3198 7.331026 ACACACTTGCTTGCTAATAAGATAGA 58.669 34.615 0.00 0.00 0.00 1.98
1529 3199 7.989741 ACACACTTGCTTGCTAATAAGATAGAT 59.010 33.333 0.00 0.00 0.00 1.98
1530 3200 9.481340 CACACTTGCTTGCTAATAAGATAGATA 57.519 33.333 0.00 0.00 0.00 1.98
1568 3238 2.271777 CCTACCTACCTTGGACCCAAA 58.728 52.381 2.84 0.00 35.33 3.28
1570 3240 3.118000 CCTACCTACCTTGGACCCAAATC 60.118 52.174 2.84 0.00 35.33 2.17
1571 3241 2.644151 ACCTACCTTGGACCCAAATCT 58.356 47.619 2.84 0.00 35.33 2.40
1572 3242 3.810623 ACCTACCTTGGACCCAAATCTA 58.189 45.455 2.84 0.00 35.33 1.98
1573 3243 4.380791 ACCTACCTTGGACCCAAATCTAT 58.619 43.478 2.84 0.00 35.33 1.98
1574 3244 4.412528 ACCTACCTTGGACCCAAATCTATC 59.587 45.833 2.84 0.00 35.33 2.08
1585 3255 6.491403 GGACCCAAATCTATCTATGTTGCAAT 59.509 38.462 0.59 0.00 0.00 3.56
1586 3256 7.308830 GGACCCAAATCTATCTATGTTGCAATC 60.309 40.741 0.59 0.00 0.00 2.67
1587 3257 7.062322 ACCCAAATCTATCTATGTTGCAATCA 58.938 34.615 0.59 3.09 0.00 2.57
1588 3258 7.727186 ACCCAAATCTATCTATGTTGCAATCAT 59.273 33.333 0.59 10.74 0.00 2.45
1607 3472 5.063180 TCATATGTTTCTGCTGCCTTTTG 57.937 39.130 1.90 0.00 0.00 2.44
1744 3639 2.109126 GCAACTCATGGAGACCGCC 61.109 63.158 0.00 0.00 33.32 6.13
1768 3953 4.337145 ACATCGGCAAATTAGGTTGGTAA 58.663 39.130 0.00 0.00 0.00 2.85
1770 3955 5.420739 ACATCGGCAAATTAGGTTGGTAATT 59.579 36.000 0.00 0.00 34.67 1.40
1771 3956 5.986501 TCGGCAAATTAGGTTGGTAATTT 57.013 34.783 0.00 0.00 41.31 1.82
1772 3957 6.347859 TCGGCAAATTAGGTTGGTAATTTT 57.652 33.333 0.00 0.00 39.52 1.82
1795 3980 7.459394 TTTTACTCACTAACAACTCTTGTCG 57.541 36.000 0.00 0.00 44.59 4.35
1796 3981 4.650754 ACTCACTAACAACTCTTGTCGT 57.349 40.909 0.00 0.00 44.59 4.34
1799 3984 4.039703 TCACTAACAACTCTTGTCGTTCG 58.960 43.478 0.00 0.00 44.59 3.95
1800 3985 3.795101 CACTAACAACTCTTGTCGTTCGT 59.205 43.478 0.00 0.00 44.59 3.85
1804 3989 2.114056 CAACTCTTGTCGTTCGTTCGA 58.886 47.619 1.29 1.29 37.51 3.71
1805 3990 2.033793 ACTCTTGTCGTTCGTTCGAG 57.966 50.000 5.16 0.00 40.52 4.04
1806 3991 1.600957 ACTCTTGTCGTTCGTTCGAGA 59.399 47.619 5.16 2.10 40.52 4.04
1807 3992 1.970608 CTCTTGTCGTTCGTTCGAGAC 59.029 52.381 5.16 7.37 40.52 3.36
1808 3993 1.050767 CTTGTCGTTCGTTCGAGACC 58.949 55.000 10.47 0.00 40.52 3.85
1809 3994 0.658244 TTGTCGTTCGTTCGAGACCG 60.658 55.000 10.47 7.87 40.52 4.79
1810 3995 2.127118 TCGTTCGTTCGAGACCGC 60.127 61.111 1.29 0.00 34.85 5.68
1811 3996 3.170585 CGTTCGTTCGAGACCGCC 61.171 66.667 0.00 0.00 35.37 6.13
1812 3997 2.808321 GTTCGTTCGAGACCGCCC 60.808 66.667 0.00 0.00 35.37 6.13
1813 3998 3.296836 TTCGTTCGAGACCGCCCA 61.297 61.111 0.00 0.00 35.37 5.36
1815 4000 2.552585 TTCGTTCGAGACCGCCCATC 62.553 60.000 0.00 0.00 35.37 3.51
1817 4002 1.144057 GTTCGAGACCGCCCATCAT 59.856 57.895 0.00 0.00 35.37 2.45
1818 4003 0.876342 GTTCGAGACCGCCCATCATC 60.876 60.000 0.00 0.00 35.37 2.92
1819 4004 1.326951 TTCGAGACCGCCCATCATCA 61.327 55.000 0.00 0.00 35.37 3.07
1822 4007 1.517242 GAGACCGCCCATCATCAATC 58.483 55.000 0.00 0.00 0.00 2.67
1823 4008 0.839277 AGACCGCCCATCATCAATCA 59.161 50.000 0.00 0.00 0.00 2.57
1825 4010 2.158564 AGACCGCCCATCATCAATCAAT 60.159 45.455 0.00 0.00 0.00 2.57
1826 4011 1.958579 ACCGCCCATCATCAATCAATG 59.041 47.619 0.00 0.00 0.00 2.82
1827 4012 1.336517 CCGCCCATCATCAATCAATGC 60.337 52.381 0.00 0.00 0.00 3.56
1828 4013 1.336517 CGCCCATCATCAATCAATGCC 60.337 52.381 0.00 0.00 0.00 4.40
1833 4018 3.634910 CCATCATCAATCAATGCCACTCA 59.365 43.478 0.00 0.00 0.00 3.41
1846 4031 3.076621 TGCCACTCATCAACTCATGTTC 58.923 45.455 0.00 0.00 33.52 3.18
1851 4036 4.758674 CACTCATCAACTCATGTTCCTTGT 59.241 41.667 0.00 0.00 33.52 3.16
1855 4040 5.355071 TCATCAACTCATGTTCCTTGTATGC 59.645 40.000 0.00 0.00 33.52 3.14
1858 4043 4.032960 ACTCATGTTCCTTGTATGCCAA 57.967 40.909 0.00 0.00 0.00 4.52
1861 4046 5.105635 ACTCATGTTCCTTGTATGCCAATTG 60.106 40.000 0.00 0.00 31.20 2.32
1862 4047 3.591196 TGTTCCTTGTATGCCAATTGC 57.409 42.857 0.00 0.00 41.77 3.56
1893 4108 9.224267 AGTAATATCATCATGTCTATTTGGCAC 57.776 33.333 0.00 0.00 30.59 5.01
1895 4110 8.701908 AATATCATCATGTCTATTTGGCACTT 57.298 30.769 0.00 0.00 30.59 3.16
1952 4179 5.221342 CCATAAGCCTCTTCTACTACAGTGG 60.221 48.000 0.00 0.00 0.00 4.00
1953 4180 3.459710 AGCCTCTTCTACTACAGTGGT 57.540 47.619 0.00 0.00 0.00 4.16
1954 4181 3.093057 AGCCTCTTCTACTACAGTGGTG 58.907 50.000 0.00 0.00 0.00 4.17
1955 4182 3.090037 GCCTCTTCTACTACAGTGGTGA 58.910 50.000 0.00 0.00 0.00 4.02
1957 4184 4.021368 GCCTCTTCTACTACAGTGGTGAAA 60.021 45.833 0.00 0.00 0.00 2.69
1961 4188 7.122948 CCTCTTCTACTACAGTGGTGAAATACT 59.877 40.741 0.00 0.00 0.00 2.12
1963 4190 9.696572 TCTTCTACTACAGTGGTGAAATACTAT 57.303 33.333 0.00 0.00 0.00 2.12
1964 4191 9.737427 CTTCTACTACAGTGGTGAAATACTATG 57.263 37.037 0.00 0.00 0.00 2.23
1965 4192 9.470399 TTCTACTACAGTGGTGAAATACTATGA 57.530 33.333 0.00 0.00 0.00 2.15
1966 4193 8.900781 TCTACTACAGTGGTGAAATACTATGAC 58.099 37.037 0.00 0.00 0.00 3.06
1967 4194 7.476540 ACTACAGTGGTGAAATACTATGACA 57.523 36.000 0.00 0.00 0.00 3.58
1968 4195 7.321153 ACTACAGTGGTGAAATACTATGACAC 58.679 38.462 0.00 0.00 0.00 3.67
1970 4197 4.876107 CAGTGGTGAAATACTATGACACCC 59.124 45.833 16.08 10.71 46.92 4.61
1971 4198 4.534500 AGTGGTGAAATACTATGACACCCA 59.466 41.667 16.08 7.25 46.92 4.51
1972 4199 4.876107 GTGGTGAAATACTATGACACCCAG 59.124 45.833 16.08 0.00 46.92 4.45
1973 4200 4.780554 TGGTGAAATACTATGACACCCAGA 59.219 41.667 16.08 2.96 46.92 3.86
1991 4218 5.365895 ACCCAGACAGATTGGTATTACCTAC 59.634 44.000 13.90 5.63 39.58 3.18
2003 4230 6.541934 GGTATTACCTACCTCATATGGGAC 57.458 45.833 3.44 0.00 45.70 4.46
2004 4231 5.126707 GGTATTACCTACCTCATATGGGACG 59.873 48.000 3.44 0.00 45.70 4.79
2006 4233 1.502039 ACCTACCTCATATGGGACGGA 59.498 52.381 3.44 0.00 0.00 4.69
2008 4235 1.540267 CTACCTCATATGGGACGGACG 59.460 57.143 3.44 0.00 0.00 4.79
2009 4236 1.006102 CCTCATATGGGACGGACGC 60.006 63.158 3.44 0.00 0.00 5.19
2010 4237 1.006102 CTCATATGGGACGGACGCC 60.006 63.158 0.00 0.00 0.00 5.68
2011 4238 1.456892 TCATATGGGACGGACGCCT 60.457 57.895 2.13 0.00 0.00 5.52
2012 4239 1.046472 TCATATGGGACGGACGCCTT 61.046 55.000 2.13 0.00 0.00 4.35
2013 4240 0.677288 CATATGGGACGGACGCCTTA 59.323 55.000 0.00 0.00 0.00 2.69
2014 4241 0.966920 ATATGGGACGGACGCCTTAG 59.033 55.000 0.00 0.00 0.00 2.18
2015 4242 1.111116 TATGGGACGGACGCCTTAGG 61.111 60.000 0.00 0.00 0.00 2.69
2016 4243 2.757099 GGGACGGACGCCTTAGGA 60.757 66.667 0.69 0.00 0.00 2.94
2036 4263 3.939592 GGAAGGAATGTTACTGCCTACAC 59.060 47.826 0.00 0.00 33.52 2.90
2038 4265 4.473477 AGGAATGTTACTGCCTACACTC 57.527 45.455 0.00 0.00 0.00 3.51
2039 4266 4.097418 AGGAATGTTACTGCCTACACTCT 58.903 43.478 0.00 0.00 0.00 3.24
2040 4267 4.160626 AGGAATGTTACTGCCTACACTCTC 59.839 45.833 0.00 0.00 0.00 3.20
2041 4268 4.081642 GGAATGTTACTGCCTACACTCTCA 60.082 45.833 0.00 0.00 0.00 3.27
2045 4274 4.238514 GTTACTGCCTACACTCTCAACTG 58.761 47.826 0.00 0.00 0.00 3.16
2058 4287 4.649674 ACTCTCAACTGAAGGTGTCTTGTA 59.350 41.667 0.00 0.00 32.52 2.41
2059 4288 5.201713 TCTCAACTGAAGGTGTCTTGTAG 57.798 43.478 0.00 0.00 32.52 2.74
2096 4332 5.261209 TGCATGAAAGCAACTTGTTAGTT 57.739 34.783 0.00 0.00 45.40 2.24
2097 4333 6.384258 TGCATGAAAGCAACTTGTTAGTTA 57.616 33.333 0.00 0.00 42.67 2.24
2260 4497 3.335579 AGGACATTTCCAAGAACGCTAC 58.664 45.455 0.00 0.00 45.72 3.58
2289 4526 5.934402 TTCTACTTCAGGTAACAGGATCC 57.066 43.478 2.48 2.48 41.41 3.36
2290 4527 4.942944 TCTACTTCAGGTAACAGGATCCA 58.057 43.478 15.82 0.00 41.41 3.41
2291 4528 5.529289 TCTACTTCAGGTAACAGGATCCAT 58.471 41.667 15.82 1.96 41.41 3.41
2292 4529 4.762289 ACTTCAGGTAACAGGATCCATC 57.238 45.455 15.82 0.00 41.41 3.51
2294 4531 4.163078 ACTTCAGGTAACAGGATCCATCTG 59.837 45.833 15.82 9.14 41.41 2.90
2295 4532 2.435805 TCAGGTAACAGGATCCATCTGC 59.564 50.000 15.82 0.40 41.41 4.26
2296 4533 2.437281 CAGGTAACAGGATCCATCTGCT 59.563 50.000 15.82 0.00 41.41 4.24
2297 4534 2.703007 AGGTAACAGGATCCATCTGCTC 59.297 50.000 15.82 0.00 41.41 4.26
2299 4536 3.118261 GGTAACAGGATCCATCTGCTCAA 60.118 47.826 15.82 0.00 35.78 3.02
2301 4538 1.134159 ACAGGATCCATCTGCTCAAGC 60.134 52.381 15.82 0.00 42.50 4.01
2303 4540 1.417145 AGGATCCATCTGCTCAAGCTC 59.583 52.381 15.82 0.00 42.66 4.09
2349 4587 3.072944 ACTCTGCTTCTTCAGACAATGC 58.927 45.455 0.00 0.00 38.11 3.56
2355 4593 4.225208 GCTTCTTCAGACAATGCAACTTC 58.775 43.478 0.00 0.00 0.00 3.01
2367 4609 5.221722 ACAATGCAACTTCAACTCTCCTCTA 60.222 40.000 0.00 0.00 0.00 2.43
2516 4758 8.943002 CGTGTCACCTGTATGTATGTCTATATA 58.057 37.037 0.00 0.00 0.00 0.86
2560 4813 6.528072 CCATTTATGCGTTTTTCTTTCTCTCC 59.472 38.462 0.00 0.00 0.00 3.71
2561 4814 6.877611 TTTATGCGTTTTTCTTTCTCTCCT 57.122 33.333 0.00 0.00 0.00 3.69
2562 4815 6.877611 TTATGCGTTTTTCTTTCTCTCCTT 57.122 33.333 0.00 0.00 0.00 3.36
2563 4816 7.972832 TTATGCGTTTTTCTTTCTCTCCTTA 57.027 32.000 0.00 0.00 0.00 2.69
2590 4865 3.293311 GCGCATTATGAGCAATGGATT 57.707 42.857 15.62 0.00 42.85 3.01
2591 4866 3.645884 GCGCATTATGAGCAATGGATTT 58.354 40.909 15.62 0.00 42.85 2.17
2592 4867 3.671928 GCGCATTATGAGCAATGGATTTC 59.328 43.478 15.62 0.00 42.85 2.17
2593 4868 4.793678 GCGCATTATGAGCAATGGATTTCA 60.794 41.667 15.62 0.00 42.85 2.69
2594 4869 4.678287 CGCATTATGAGCAATGGATTTCAC 59.322 41.667 0.00 0.00 36.58 3.18
2782 5065 5.414789 TCTTTCGTGGATTCAAGGATACA 57.585 39.130 0.00 0.00 41.41 2.29
2831 5114 7.535489 AATAACTACCTCATCGTTTGCTTAC 57.465 36.000 0.00 0.00 0.00 2.34
3124 5416 1.538950 GCCTCCTTTCTTGCAGACTTG 59.461 52.381 0.00 0.00 0.00 3.16
3263 5555 7.254932 GCATCCCAGTAAGTTTTCTATTAGCTG 60.255 40.741 0.00 0.00 0.00 4.24
3278 5570 7.295340 TCTATTAGCTGGGTGTAATCTGAGTA 58.705 38.462 0.00 0.00 0.00 2.59
3279 5571 6.808321 ATTAGCTGGGTGTAATCTGAGTAA 57.192 37.500 0.00 0.00 0.00 2.24
3399 5691 7.519032 TGCTATTAAACTTGCAACTTACCTT 57.481 32.000 0.00 0.00 32.12 3.50
3400 5692 7.947282 TGCTATTAAACTTGCAACTTACCTTT 58.053 30.769 0.00 0.00 32.12 3.11
3551 5843 9.495754 GTCAGATTTACTATCAAAACATGAAGC 57.504 33.333 0.00 0.00 42.54 3.86
3557 5849 6.408858 ACTATCAAAACATGAAGCGTAGTG 57.591 37.500 0.00 0.00 42.54 2.74
3611 5903 3.842007 TTTTTGTACTCCCTCCGTTCA 57.158 42.857 0.00 0.00 0.00 3.18
3612 5904 2.825861 TTTGTACTCCCTCCGTTCAC 57.174 50.000 0.00 0.00 0.00 3.18
3613 5905 2.005370 TTGTACTCCCTCCGTTCACT 57.995 50.000 0.00 0.00 0.00 3.41
3614 5906 2.005370 TGTACTCCCTCCGTTCACTT 57.995 50.000 0.00 0.00 0.00 3.16
3615 5907 2.322658 TGTACTCCCTCCGTTCACTTT 58.677 47.619 0.00 0.00 0.00 2.66
3616 5908 2.701951 TGTACTCCCTCCGTTCACTTTT 59.298 45.455 0.00 0.00 0.00 2.27
3617 5909 2.256117 ACTCCCTCCGTTCACTTTTG 57.744 50.000 0.00 0.00 0.00 2.44
3618 5910 1.489230 ACTCCCTCCGTTCACTTTTGT 59.511 47.619 0.00 0.00 0.00 2.83
3619 5911 2.701951 ACTCCCTCCGTTCACTTTTGTA 59.298 45.455 0.00 0.00 0.00 2.41
3620 5912 3.135167 ACTCCCTCCGTTCACTTTTGTAA 59.865 43.478 0.00 0.00 0.00 2.41
3621 5913 3.735591 TCCCTCCGTTCACTTTTGTAAG 58.264 45.455 0.00 0.00 37.40 2.34
3622 5914 3.135167 TCCCTCCGTTCACTTTTGTAAGT 59.865 43.478 0.00 0.00 45.40 2.24
3623 5915 3.497262 CCCTCCGTTCACTTTTGTAAGTC 59.503 47.826 0.00 0.00 42.67 3.01
3624 5916 4.124238 CCTCCGTTCACTTTTGTAAGTCA 58.876 43.478 0.00 0.00 42.67 3.41
3625 5917 4.755123 CCTCCGTTCACTTTTGTAAGTCAT 59.245 41.667 0.00 0.00 42.67 3.06
3626 5918 5.238650 CCTCCGTTCACTTTTGTAAGTCATT 59.761 40.000 0.00 0.00 42.67 2.57
3627 5919 6.238648 CCTCCGTTCACTTTTGTAAGTCATTT 60.239 38.462 0.00 0.00 42.67 2.32
3628 5920 6.721321 TCCGTTCACTTTTGTAAGTCATTTC 58.279 36.000 0.00 0.00 42.67 2.17
3629 5921 6.316640 TCCGTTCACTTTTGTAAGTCATTTCA 59.683 34.615 0.00 0.00 42.67 2.69
3630 5922 6.632834 CCGTTCACTTTTGTAAGTCATTTCAG 59.367 38.462 0.00 0.00 42.67 3.02
3631 5923 7.406553 CGTTCACTTTTGTAAGTCATTTCAGA 58.593 34.615 0.00 0.00 42.67 3.27
3632 5924 7.373441 CGTTCACTTTTGTAAGTCATTTCAGAC 59.627 37.037 0.00 0.00 42.67 3.51
3633 5925 7.857734 TCACTTTTGTAAGTCATTTCAGACA 57.142 32.000 0.00 0.00 42.67 3.41
3634 5926 7.919690 TCACTTTTGTAAGTCATTTCAGACAG 58.080 34.615 0.00 0.00 42.67 3.51
3635 5927 6.634436 CACTTTTGTAAGTCATTTCAGACAGC 59.366 38.462 0.00 0.00 42.67 4.40
3636 5928 6.543831 ACTTTTGTAAGTCATTTCAGACAGCT 59.456 34.615 0.00 0.00 40.60 4.24
3637 5929 6.545504 TTTGTAAGTCATTTCAGACAGCTC 57.454 37.500 0.00 0.00 40.98 4.09
3638 5930 5.213891 TGTAAGTCATTTCAGACAGCTCA 57.786 39.130 0.00 0.00 40.98 4.26
3639 5931 5.610398 TGTAAGTCATTTCAGACAGCTCAA 58.390 37.500 0.00 0.00 40.98 3.02
3640 5932 6.054941 TGTAAGTCATTTCAGACAGCTCAAA 58.945 36.000 0.00 0.00 40.98 2.69
3641 5933 6.542005 TGTAAGTCATTTCAGACAGCTCAAAA 59.458 34.615 0.00 0.00 40.98 2.44
3642 5934 6.645790 AAGTCATTTCAGACAGCTCAAAAT 57.354 33.333 0.00 0.00 40.98 1.82
3643 5935 6.010294 AGTCATTTCAGACAGCTCAAAATG 57.990 37.500 0.00 0.00 40.98 2.32
3644 5936 5.048224 AGTCATTTCAGACAGCTCAAAATGG 60.048 40.000 12.29 0.00 40.98 3.16
3645 5937 4.219070 TCATTTCAGACAGCTCAAAATGGG 59.781 41.667 12.29 0.00 36.21 4.00
3646 5938 2.957402 TCAGACAGCTCAAAATGGGT 57.043 45.000 0.00 0.00 0.00 4.51
3647 5939 3.228188 TCAGACAGCTCAAAATGGGTT 57.772 42.857 0.00 0.00 0.00 4.11
3648 5940 2.886523 TCAGACAGCTCAAAATGGGTTG 59.113 45.455 0.00 0.00 35.03 3.77
3649 5941 2.624838 CAGACAGCTCAAAATGGGTTGT 59.375 45.455 0.00 0.00 45.15 3.32
3650 5942 3.068590 CAGACAGCTCAAAATGGGTTGTT 59.931 43.478 1.22 0.00 42.47 2.83
3651 5943 3.706086 AGACAGCTCAAAATGGGTTGTTT 59.294 39.130 1.22 0.00 42.47 2.83
3652 5944 4.162131 AGACAGCTCAAAATGGGTTGTTTT 59.838 37.500 1.22 0.00 42.47 2.43
3653 5945 4.190772 ACAGCTCAAAATGGGTTGTTTTG 58.809 39.130 5.27 5.27 39.31 2.44
3654 5946 3.002553 CAGCTCAAAATGGGTTGTTTTGC 59.997 43.478 6.49 0.00 43.04 3.68
3655 5947 2.941720 GCTCAAAATGGGTTGTTTTGCA 59.058 40.909 6.49 0.00 43.04 4.08
3656 5948 3.242706 GCTCAAAATGGGTTGTTTTGCAC 60.243 43.478 6.49 0.00 43.04 4.57
3657 5949 3.937706 CTCAAAATGGGTTGTTTTGCACA 59.062 39.130 6.49 0.00 43.04 4.57
3658 5950 4.521146 TCAAAATGGGTTGTTTTGCACAT 58.479 34.783 6.49 0.00 43.04 3.21
3659 5951 4.946157 TCAAAATGGGTTGTTTTGCACATT 59.054 33.333 6.49 0.00 43.04 2.71
3660 5952 4.897025 AAATGGGTTGTTTTGCACATTG 57.103 36.364 0.00 0.00 34.43 2.82
3661 5953 3.557228 ATGGGTTGTTTTGCACATTGT 57.443 38.095 0.00 0.00 34.43 2.71
3662 5954 2.898705 TGGGTTGTTTTGCACATTGTC 58.101 42.857 0.00 0.00 34.43 3.18
3663 5955 2.499289 TGGGTTGTTTTGCACATTGTCT 59.501 40.909 0.00 0.00 34.43 3.41
3664 5956 3.123050 GGGTTGTTTTGCACATTGTCTC 58.877 45.455 0.00 0.00 34.43 3.36
3665 5957 3.181476 GGGTTGTTTTGCACATTGTCTCT 60.181 43.478 0.00 0.00 34.43 3.10
3666 5958 4.037446 GGGTTGTTTTGCACATTGTCTCTA 59.963 41.667 0.00 0.00 34.43 2.43
3667 5959 5.451242 GGGTTGTTTTGCACATTGTCTCTAA 60.451 40.000 0.00 0.00 34.43 2.10
3668 5960 6.215845 GGTTGTTTTGCACATTGTCTCTAAT 58.784 36.000 0.00 0.00 34.43 1.73
3669 5961 6.144402 GGTTGTTTTGCACATTGTCTCTAATG 59.856 38.462 0.00 0.00 42.38 1.90
3671 5963 6.437928 TGTTTTGCACATTGTCTCTAATGTC 58.562 36.000 1.46 0.00 45.49 3.06
3672 5964 6.262944 TGTTTTGCACATTGTCTCTAATGTCT 59.737 34.615 1.46 0.00 45.49 3.41
3673 5965 6.882610 TTTGCACATTGTCTCTAATGTCTT 57.117 33.333 1.46 0.00 45.49 3.01
3674 5966 6.882610 TTGCACATTGTCTCTAATGTCTTT 57.117 33.333 1.46 0.00 45.49 2.52
3675 5967 7.977789 TTGCACATTGTCTCTAATGTCTTTA 57.022 32.000 1.46 0.00 45.49 1.85
3676 5968 7.977789 TGCACATTGTCTCTAATGTCTTTAA 57.022 32.000 1.46 0.00 45.49 1.52
3677 5969 8.032952 TGCACATTGTCTCTAATGTCTTTAAG 57.967 34.615 1.46 0.00 45.49 1.85
3678 5970 7.119699 TGCACATTGTCTCTAATGTCTTTAAGG 59.880 37.037 1.46 0.00 45.49 2.69
3679 5971 7.119846 GCACATTGTCTCTAATGTCTTTAAGGT 59.880 37.037 1.46 0.00 45.49 3.50
3680 5972 8.660373 CACATTGTCTCTAATGTCTTTAAGGTC 58.340 37.037 1.46 0.00 45.49 3.85
3681 5973 8.598041 ACATTGTCTCTAATGTCTTTAAGGTCT 58.402 33.333 0.00 0.00 45.49 3.85
3682 5974 9.442047 CATTGTCTCTAATGTCTTTAAGGTCTT 57.558 33.333 0.00 0.00 34.21 3.01
3699 5991 9.720769 TTAAGGTCTTATAAAAGTGAACAGAGG 57.279 33.333 0.00 0.00 34.13 3.69
3700 5992 6.712276 AGGTCTTATAAAAGTGAACAGAGGG 58.288 40.000 0.00 0.00 34.13 4.30
3701 5993 6.500751 AGGTCTTATAAAAGTGAACAGAGGGA 59.499 38.462 0.00 0.00 34.13 4.20
3702 5994 6.819146 GGTCTTATAAAAGTGAACAGAGGGAG 59.181 42.308 0.00 0.00 34.13 4.30
3703 5995 6.314152 GTCTTATAAAAGTGAACAGAGGGAGC 59.686 42.308 0.00 0.00 34.13 4.70
3774 6066 8.164070 GGGAATCTCACCTGTTATATGGTTTAT 58.836 37.037 0.00 0.00 33.75 1.40
3898 6206 5.559148 AAATCTGGTGAGTCTATGATCCC 57.441 43.478 0.00 0.00 0.00 3.85
3900 6208 3.570540 TCTGGTGAGTCTATGATCCCAG 58.429 50.000 0.00 0.00 36.24 4.45
3901 6209 3.205282 TCTGGTGAGTCTATGATCCCAGA 59.795 47.826 7.28 7.28 39.00 3.86
3902 6210 3.963374 CTGGTGAGTCTATGATCCCAGAA 59.037 47.826 0.00 0.00 36.65 3.02
3903 6211 3.963374 TGGTGAGTCTATGATCCCAGAAG 59.037 47.826 0.00 0.00 0.00 2.85
3904 6212 3.964031 GGTGAGTCTATGATCCCAGAAGT 59.036 47.826 0.00 0.00 0.00 3.01
3918 6226 3.304659 CCCAGAAGTTTGTTCATTGGTCG 60.305 47.826 0.00 0.00 0.00 4.79
4005 6313 7.715249 GCCTTCAGAGTATGGATTTTGTACATA 59.285 37.037 0.00 0.00 32.22 2.29
4317 6928 5.509501 GGGCAACACTCATTGATCTTTTTGA 60.510 40.000 0.00 0.00 39.74 2.69
4421 7042 4.399303 CCTTTGTTTCTCTGTTCACCTGTT 59.601 41.667 0.00 0.00 0.00 3.16
4522 7145 3.917329 ACTATGACCATCGGTACATCG 57.083 47.619 0.00 0.00 35.25 3.84
4740 7429 7.652105 ACCTTACATGACATACTACTAAATGCG 59.348 37.037 0.00 0.00 0.00 4.73
4811 7500 7.718314 TGAAGGATCTTGTCATGATTTATCTGG 59.282 37.037 0.00 0.00 0.00 3.86
4876 7565 7.392418 TCTGATAGCAAGCTCTTATGCAATAT 58.608 34.615 10.57 1.01 44.95 1.28
4910 7599 1.066430 GGTCCAGAAGGTTGCGATGTA 60.066 52.381 0.00 0.00 35.89 2.29
5109 7800 5.103940 AGTTGGCCTGTATATCTCATTTGGT 60.104 40.000 3.32 0.00 0.00 3.67
5211 9055 9.492973 ACTTTACCACTTAATTGTTACGTACAT 57.507 29.630 0.00 0.00 36.44 2.29
5212 9056 9.962759 CTTTACCACTTAATTGTTACGTACATC 57.037 33.333 0.00 0.00 36.44 3.06
5213 9057 9.709495 TTTACCACTTAATTGTTACGTACATCT 57.291 29.630 0.00 0.00 36.44 2.90
5382 9244 4.342378 TCCGGCCAGCTTCATATATAGATC 59.658 45.833 2.24 0.00 0.00 2.75
5383 9245 4.502259 CCGGCCAGCTTCATATATAGATCC 60.502 50.000 2.24 0.00 0.00 3.36
5384 9246 4.343526 CGGCCAGCTTCATATATAGATCCT 59.656 45.833 2.24 0.00 0.00 3.24
5385 9247 5.609423 GGCCAGCTTCATATATAGATCCTG 58.391 45.833 0.00 0.00 0.00 3.86
5386 9248 5.454471 GGCCAGCTTCATATATAGATCCTGG 60.454 48.000 0.00 16.65 37.01 4.45
5793 9710 3.055094 AGACTACGAATTGAACCTGCCAT 60.055 43.478 0.00 0.00 0.00 4.40
5872 13621 3.228188 TCTGGGCAGAAATTGTTCACT 57.772 42.857 0.00 0.00 36.09 3.41
5873 13622 4.365514 TCTGGGCAGAAATTGTTCACTA 57.634 40.909 0.00 0.00 36.09 2.74
5874 13623 4.072131 TCTGGGCAGAAATTGTTCACTAC 58.928 43.478 0.00 0.00 36.09 2.73
5875 13624 3.153919 TGGGCAGAAATTGTTCACTACC 58.846 45.455 0.00 0.00 36.09 3.18
5876 13625 3.153919 GGGCAGAAATTGTTCACTACCA 58.846 45.455 0.00 0.00 36.09 3.25
5877 13626 3.057526 GGGCAGAAATTGTTCACTACCAC 60.058 47.826 0.00 0.00 36.09 4.16
5878 13627 3.821033 GGCAGAAATTGTTCACTACCACT 59.179 43.478 0.00 0.00 36.09 4.00
6843 14865 0.899019 TTGATGTTGCCAGCATGCAT 59.101 45.000 21.98 1.71 41.70 3.96
6844 14866 0.174617 TGATGTTGCCAGCATGCATG 59.825 50.000 22.70 22.70 41.70 4.06
6954 14999 3.408634 CCGGGTTTCAGAATGTTACTGT 58.591 45.455 0.00 0.00 37.40 3.55
6955 15000 3.818773 CCGGGTTTCAGAATGTTACTGTT 59.181 43.478 0.00 0.00 37.40 3.16
6956 15001 4.998672 CCGGGTTTCAGAATGTTACTGTTA 59.001 41.667 0.00 0.00 37.40 2.41
6957 15002 5.121768 CCGGGTTTCAGAATGTTACTGTTAG 59.878 44.000 0.00 0.00 37.40 2.34
6995 15040 9.075678 CCTATGGCTATTCTTCTCATTTCATTT 57.924 33.333 0.00 0.00 0.00 2.32
7059 15104 0.901114 TTAGGCTACGGCACCACTCA 60.901 55.000 0.00 0.00 40.87 3.41
7091 15136 4.453480 AAATGAAGAGTGGAAACAGGGA 57.547 40.909 0.00 0.00 44.46 4.20
7125 15170 0.392336 GGATTTGCAACACCAAGCCA 59.608 50.000 14.01 0.00 0.00 4.75
7127 15172 2.233431 GGATTTGCAACACCAAGCCATA 59.767 45.455 14.01 0.00 0.00 2.74
7128 15173 3.306641 GGATTTGCAACACCAAGCCATAA 60.307 43.478 14.01 0.00 0.00 1.90
7130 15175 5.395103 GGATTTGCAACACCAAGCCATAATA 60.395 40.000 14.01 0.00 0.00 0.98
7131 15176 5.674052 TTTGCAACACCAAGCCATAATAT 57.326 34.783 0.00 0.00 0.00 1.28
7132 15177 6.782082 TTTGCAACACCAAGCCATAATATA 57.218 33.333 0.00 0.00 0.00 0.86
7133 15178 6.782082 TTGCAACACCAAGCCATAATATAA 57.218 33.333 0.00 0.00 0.00 0.98
7134 15179 6.389830 TGCAACACCAAGCCATAATATAAG 57.610 37.500 0.00 0.00 0.00 1.73
7135 15180 6.125719 TGCAACACCAAGCCATAATATAAGA 58.874 36.000 0.00 0.00 0.00 2.10
7136 15181 6.262944 TGCAACACCAAGCCATAATATAAGAG 59.737 38.462 0.00 0.00 0.00 2.85
7197 15391 2.426024 GGACGACTACCATGCAGTAGAA 59.574 50.000 17.42 0.00 41.98 2.10
7222 15416 5.353956 TGTCGGTATGAAATTGACCATCAAG 59.646 40.000 0.00 0.00 40.05 3.02
7224 15418 5.353956 TCGGTATGAAATTGACCATCAAGTG 59.646 40.000 0.00 0.00 40.05 3.16
7305 15499 5.186021 CACTCCGTCCCATAATATAAGAGCT 59.814 44.000 0.00 0.00 0.00 4.09
7313 15507 6.995686 TCCCATAATATAAGAGCTTTTTCGCA 59.004 34.615 0.00 0.00 0.00 5.10
7369 15563 4.649267 TGGGACACATGGAGTAATTGAA 57.351 40.909 0.00 0.00 0.00 2.69
7377 15571 9.906660 GACACATGGAGTAATTGAAAACATAAA 57.093 29.630 0.00 0.00 0.00 1.40
7429 15623 1.128147 GTAGCAGCGCGCATTGTTTC 61.128 55.000 35.10 15.49 46.13 2.78
7474 15668 0.605319 TTTCAACATCCGCCGCTCTT 60.605 50.000 0.00 0.00 0.00 2.85
7484 15678 3.102097 CCGCTCTTCGCCCAATTC 58.898 61.111 0.00 0.00 36.73 2.17
7508 15702 1.662686 CCTTTTCTCCCACCCTCTCT 58.337 55.000 0.00 0.00 0.00 3.10
7523 15717 0.388134 TCTCTTTTCTTCCGTCGCCG 60.388 55.000 0.00 0.00 0.00 6.46
7538 15732 1.062525 GCCGATGCATGAAACCGTC 59.937 57.895 2.46 0.00 37.47 4.79
7568 15762 3.849951 GAAGATGGAGCCGGCCGA 61.850 66.667 30.73 12.74 0.00 5.54
7596 15790 2.419198 GATCCGAGCATCACGCCT 59.581 61.111 0.00 0.00 44.04 5.52
7674 15868 5.447010 CGCAAAGGAAGAGAAGCTCAATAAG 60.447 44.000 0.00 0.00 32.06 1.73
7684 15878 2.004808 GCTCAATAAGCGGTTGGCCC 62.005 60.000 10.73 0.00 45.17 5.80
7727 15921 1.643868 TTGTGGCGGACGATGCATTC 61.644 55.000 0.00 0.00 0.00 2.67
7735 15929 4.012554 CGATGCATTCGTAGCGGT 57.987 55.556 0.00 0.00 43.01 5.68
7742 15936 2.997075 ATTCGTAGCGGTCGTGGCA 61.997 57.895 0.00 0.00 0.00 4.92
7759 15953 2.524394 AGACACTGCCAGACGGGT 60.524 61.111 0.00 0.00 39.65 5.28
7760 15954 2.357517 GACACTGCCAGACGGGTG 60.358 66.667 0.00 0.00 39.65 4.61
7795 15989 5.179368 ACAGACAACACCACTCAAATATTCG 59.821 40.000 0.00 0.00 0.00 3.34
7833 16027 0.310543 GCATGCGTCCAACACTTTGA 59.689 50.000 0.00 0.00 34.24 2.69
7841 16035 3.610677 CGTCCAACACTTTGAACCAAAAC 59.389 43.478 0.00 0.00 34.24 2.43
7877 16071 4.460683 GCGCCCGTCCATGGTGTA 62.461 66.667 12.58 0.00 35.76 2.90
7881 16075 0.180406 GCCCGTCCATGGTGTATTCT 59.820 55.000 12.58 0.00 0.00 2.40
7884 16078 1.670811 CCGTCCATGGTGTATTCTTGC 59.329 52.381 12.58 0.00 0.00 4.01
7891 16085 1.654023 GGTGTATTCTTGCGCACCCC 61.654 60.000 11.12 0.00 43.96 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
181 187 3.764466 CGAGGCTGGCTCGTCCTT 61.764 66.667 36.23 0.74 39.25 3.36
285 296 2.770827 GCCCCCAAACCCTAGCTT 59.229 61.111 0.00 0.00 0.00 3.74
334 345 0.104304 GTCGTCCACACTCCACACTT 59.896 55.000 0.00 0.00 0.00 3.16
339 350 2.558286 GGTCGTCGTCCACACTCCA 61.558 63.158 3.49 0.00 0.00 3.86
364 378 2.131023 CCTTCTTAGATGGGGAAGCCT 58.869 52.381 6.28 0.00 36.21 4.58
376 390 3.436496 GAACGGTCGTCATCCTTCTTAG 58.564 50.000 0.00 0.00 0.00 2.18
448 462 0.544595 GACCACCTACCTCCCACTGT 60.545 60.000 0.00 0.00 0.00 3.55
450 464 1.305046 CGACCACCTACCTCCCACT 60.305 63.158 0.00 0.00 0.00 4.00
622 636 3.192633 CGTTTGGGATAAAAGGGGACAAG 59.807 47.826 0.00 0.00 0.00 3.16
626 640 3.423749 GTTCGTTTGGGATAAAAGGGGA 58.576 45.455 0.00 0.00 0.00 4.81
680 695 1.407437 GGTGTGACCATCTAAGGCCAG 60.407 57.143 5.01 0.00 38.42 4.85
729 2169 2.660552 AACTCAACCACGCGTCGG 60.661 61.111 21.20 21.20 0.00 4.79
754 2194 5.106317 ACCCACGTGAATAAAAGCATTAGTG 60.106 40.000 19.30 0.00 0.00 2.74
766 2206 1.909986 TGGAATGGACCCACGTGAATA 59.090 47.619 19.30 0.00 0.00 1.75
772 2212 1.152963 GGGATGGAATGGACCCACG 60.153 63.158 0.00 0.00 41.72 4.94
783 2223 0.103228 ATGGGATGGGATGGGATGGA 60.103 55.000 0.00 0.00 0.00 3.41
785 2225 0.333993 GGATGGGATGGGATGGGATG 59.666 60.000 0.00 0.00 0.00 3.51
797 2237 0.253583 TCTGTTGGGATGGGATGGGA 60.254 55.000 0.00 0.00 0.00 4.37
813 2253 3.888930 GTCATAACCCCTCTCTCTCTCTG 59.111 52.174 0.00 0.00 0.00 3.35
815 2255 3.904717 TGTCATAACCCCTCTCTCTCTC 58.095 50.000 0.00 0.00 0.00 3.20
817 2257 4.219115 TGATGTCATAACCCCTCTCTCTC 58.781 47.826 0.00 0.00 0.00 3.20
819 2259 5.070981 TGAATGATGTCATAACCCCTCTCTC 59.929 44.000 0.00 0.00 35.10 3.20
821 2261 5.296151 TGAATGATGTCATAACCCCTCTC 57.704 43.478 0.00 0.00 35.10 3.20
822 2262 5.919348 ATGAATGATGTCATAACCCCTCT 57.081 39.130 0.00 0.00 36.46 3.69
825 2265 6.207417 CCACTAATGAATGATGTCATAACCCC 59.793 42.308 0.00 0.00 37.25 4.95
826 2266 6.207417 CCCACTAATGAATGATGTCATAACCC 59.793 42.308 0.00 0.00 37.25 4.11
834 2274 5.945310 ACATAGCCCACTAATGAATGATGT 58.055 37.500 0.00 0.00 30.45 3.06
948 2413 0.450482 GATGACAACGAAACGCACCG 60.450 55.000 0.00 0.00 0.00 4.94
949 2414 0.584396 TGATGACAACGAAACGCACC 59.416 50.000 0.00 0.00 0.00 5.01
950 2415 2.096466 TGATGATGACAACGAAACGCAC 60.096 45.455 0.00 0.00 0.00 5.34
951 2416 2.139118 TGATGATGACAACGAAACGCA 58.861 42.857 0.00 0.00 0.00 5.24
952 2417 2.873170 TGATGATGACAACGAAACGC 57.127 45.000 0.00 0.00 0.00 4.84
1004 2469 9.972106 AGAAACAGAGAGAGGATAATGATTTTT 57.028 29.630 0.00 0.00 0.00 1.94
1009 2474 6.439487 AGGAGAAACAGAGAGAGGATAATGA 58.561 40.000 0.00 0.00 0.00 2.57
1010 2475 6.239289 GGAGGAGAAACAGAGAGAGGATAATG 60.239 46.154 0.00 0.00 0.00 1.90
1106 2572 5.105837 CCTCCCTCTTTGTACAGTACAGTAC 60.106 48.000 18.75 18.75 43.58 2.73
1107 2573 5.014858 CCTCCCTCTTTGTACAGTACAGTA 58.985 45.833 13.20 5.64 40.24 2.74
1108 2574 3.833070 CCTCCCTCTTTGTACAGTACAGT 59.167 47.826 13.20 0.00 40.24 3.55
1109 2575 3.833070 ACCTCCCTCTTTGTACAGTACAG 59.167 47.826 13.20 3.79 40.24 2.74
1110 2576 3.853207 ACCTCCCTCTTTGTACAGTACA 58.147 45.455 9.51 9.51 36.79 2.90
1111 2577 4.282703 TCAACCTCCCTCTTTGTACAGTAC 59.717 45.833 3.49 3.49 0.00 2.73
1112 2578 4.485875 TCAACCTCCCTCTTTGTACAGTA 58.514 43.478 0.00 0.00 0.00 2.74
1113 2579 3.314693 TCAACCTCCCTCTTTGTACAGT 58.685 45.455 0.00 0.00 0.00 3.55
1114 2580 3.325135 ACTCAACCTCCCTCTTTGTACAG 59.675 47.826 0.00 0.00 0.00 2.74
1115 2581 3.071023 CACTCAACCTCCCTCTTTGTACA 59.929 47.826 0.00 0.00 0.00 2.90
1116 2582 3.557264 CCACTCAACCTCCCTCTTTGTAC 60.557 52.174 0.00 0.00 0.00 2.90
1117 2583 2.637872 CCACTCAACCTCCCTCTTTGTA 59.362 50.000 0.00 0.00 0.00 2.41
1118 2584 1.421646 CCACTCAACCTCCCTCTTTGT 59.578 52.381 0.00 0.00 0.00 2.83
1119 2585 1.699634 TCCACTCAACCTCCCTCTTTG 59.300 52.381 0.00 0.00 0.00 2.77
1126 2592 1.617947 ATCCGCTCCACTCAACCTCC 61.618 60.000 0.00 0.00 0.00 4.30
1155 2621 0.179026 AGACGAGCGCCCTCTGTATA 60.179 55.000 2.29 0.00 35.90 1.47
1156 2622 1.448922 GAGACGAGCGCCCTCTGTAT 61.449 60.000 2.29 0.00 35.90 2.29
1157 2623 2.045242 AGACGAGCGCCCTCTGTA 60.045 61.111 2.29 0.00 35.90 2.74
1158 2624 3.444805 GAGACGAGCGCCCTCTGT 61.445 66.667 2.29 0.00 35.90 3.41
1159 2625 4.200283 GGAGACGAGCGCCCTCTG 62.200 72.222 2.29 0.00 35.90 3.35
1185 2651 4.247380 GAGGGGCATAGCAGCGCT 62.247 66.667 2.64 2.64 45.65 5.92
1204 2670 0.033228 CTCAGAGACGATGGCCATCC 59.967 60.000 34.76 23.69 34.40 3.51
1205 2671 0.599728 GCTCAGAGACGATGGCCATC 60.600 60.000 32.34 32.34 34.56 3.51
1206 2672 1.332889 TGCTCAGAGACGATGGCCAT 61.333 55.000 20.96 20.96 0.00 4.40
1208 2674 1.227205 CTGCTCAGAGACGATGGCC 60.227 63.158 0.00 0.00 0.00 5.36
1209 2675 1.882167 GCTGCTCAGAGACGATGGC 60.882 63.158 0.00 0.00 0.00 4.40
1210 2676 0.528033 CTGCTGCTCAGAGACGATGG 60.528 60.000 0.00 0.00 45.72 3.51
1211 2677 1.146957 GCTGCTGCTCAGAGACGATG 61.147 60.000 8.53 0.00 45.72 3.84
1214 2680 1.806351 CTGCTGCTGCTCAGAGACG 60.806 63.158 17.00 0.00 45.72 4.18
1216 2682 2.265109 GCTGCTGCTGCTCAGAGA 59.735 61.111 22.10 0.00 45.72 3.10
1218 2684 2.047179 CTGCTGCTGCTGCTCAGA 60.047 61.111 27.67 10.41 45.72 3.27
1242 2708 2.345876 GAGGAAGAAGCAGAAGCAGTC 58.654 52.381 0.00 0.00 45.49 3.51
1289 2794 2.286121 TTCCTACCCCTGCCCCTG 60.286 66.667 0.00 0.00 0.00 4.45
1291 2796 3.417779 GGTTCCTACCCCTGCCCC 61.418 72.222 0.00 0.00 38.60 5.80
1292 2797 2.612746 TGGTTCCTACCCCTGCCC 60.613 66.667 0.00 0.00 44.35 5.36
1293 2798 2.675371 GTGGTTCCTACCCCTGCC 59.325 66.667 0.00 0.00 44.35 4.85
1294 2799 1.785353 TTGGTGGTTCCTACCCCTGC 61.785 60.000 0.00 0.00 44.35 4.85
1295 2800 0.328258 CTTGGTGGTTCCTACCCCTG 59.672 60.000 0.00 0.00 44.35 4.45
1297 2802 1.001269 GCTTGGTGGTTCCTACCCC 60.001 63.158 0.00 0.00 44.35 4.95
1298 2803 1.001269 GGCTTGGTGGTTCCTACCC 60.001 63.158 0.00 0.00 44.35 3.69
1299 2804 1.001269 GGGCTTGGTGGTTCCTACC 60.001 63.158 0.00 0.00 45.26 3.18
1300 2805 0.111639 TTGGGCTTGGTGGTTCCTAC 59.888 55.000 0.00 0.00 37.07 3.18
1320 2825 1.669115 GACGGGGATGATGATGGCG 60.669 63.158 0.00 0.00 0.00 5.69
1425 3009 1.127343 CATTGTCCTCCTCCTCCTCC 58.873 60.000 0.00 0.00 0.00 4.30
1426 3010 0.467804 GCATTGTCCTCCTCCTCCTC 59.532 60.000 0.00 0.00 0.00 3.71
1427 3011 0.043940 AGCATTGTCCTCCTCCTCCT 59.956 55.000 0.00 0.00 0.00 3.69
1495 3079 4.256920 AGCAAGCAAGTGTGTATCCTTAG 58.743 43.478 0.00 0.00 0.00 2.18
1496 3080 4.286297 AGCAAGCAAGTGTGTATCCTTA 57.714 40.909 0.00 0.00 0.00 2.69
1497 3081 3.146104 AGCAAGCAAGTGTGTATCCTT 57.854 42.857 0.00 0.00 0.00 3.36
1527 3197 7.553760 GGTAGGTAAGCATCTAGGAGTAGTATC 59.446 44.444 0.00 0.00 0.00 2.24
1528 3198 7.240194 AGGTAGGTAAGCATCTAGGAGTAGTAT 59.760 40.741 0.00 0.00 0.00 2.12
1529 3199 6.561838 AGGTAGGTAAGCATCTAGGAGTAGTA 59.438 42.308 0.00 0.00 0.00 1.82
1530 3200 5.373257 AGGTAGGTAAGCATCTAGGAGTAGT 59.627 44.000 0.00 0.00 0.00 2.73
1536 3206 5.000570 AGGTAGGTAGGTAAGCATCTAGG 57.999 47.826 0.00 0.00 0.00 3.02
1537 3207 5.244178 CCAAGGTAGGTAGGTAAGCATCTAG 59.756 48.000 0.00 0.00 0.00 2.43
1572 3242 8.080417 GCAGAAACATATGATTGCAACATAGAT 58.920 33.333 10.38 11.61 34.43 1.98
1573 3243 7.283807 AGCAGAAACATATGATTGCAACATAGA 59.716 33.333 10.38 7.14 34.43 1.98
1574 3244 7.378728 CAGCAGAAACATATGATTGCAACATAG 59.621 37.037 10.38 15.29 34.43 2.23
1585 3255 4.523943 ACAAAAGGCAGCAGAAACATATGA 59.476 37.500 10.38 0.00 0.00 2.15
1586 3256 4.813027 ACAAAAGGCAGCAGAAACATATG 58.187 39.130 0.00 0.00 0.00 1.78
1587 3257 6.604795 AGATACAAAAGGCAGCAGAAACATAT 59.395 34.615 0.00 0.00 0.00 1.78
1588 3258 5.945784 AGATACAAAAGGCAGCAGAAACATA 59.054 36.000 0.00 0.00 0.00 2.29
1590 3260 4.144297 AGATACAAAAGGCAGCAGAAACA 58.856 39.130 0.00 0.00 0.00 2.83
1591 3261 4.773323 AGATACAAAAGGCAGCAGAAAC 57.227 40.909 0.00 0.00 0.00 2.78
1593 3263 5.312895 TGTTAGATACAAAAGGCAGCAGAA 58.687 37.500 0.00 0.00 32.64 3.02
1595 3265 5.824904 ATGTTAGATACAAAAGGCAGCAG 57.175 39.130 0.00 0.00 40.89 4.24
1596 3266 6.657117 TGTTATGTTAGATACAAAAGGCAGCA 59.343 34.615 0.00 0.00 40.89 4.41
1597 3267 7.083875 TGTTATGTTAGATACAAAAGGCAGC 57.916 36.000 0.00 0.00 40.89 5.25
1744 3639 3.945285 ACCAACCTAATTTGCCGATGTAG 59.055 43.478 0.00 0.00 0.00 2.74
1770 3955 7.546667 ACGACAAGAGTTGTTAGTGAGTAAAAA 59.453 33.333 0.00 0.00 45.52 1.94
1771 3956 7.037438 ACGACAAGAGTTGTTAGTGAGTAAAA 58.963 34.615 0.00 0.00 45.52 1.52
1772 3957 6.567050 ACGACAAGAGTTGTTAGTGAGTAAA 58.433 36.000 0.00 0.00 45.52 2.01
1775 3960 4.650754 ACGACAAGAGTTGTTAGTGAGT 57.349 40.909 0.00 0.00 45.52 3.41
1784 3969 2.114056 TCGAACGAACGACAAGAGTTG 58.886 47.619 0.14 0.00 37.37 3.16
1785 3970 2.032550 TCTCGAACGAACGACAAGAGTT 59.967 45.455 0.14 0.00 37.37 3.01
1786 3971 1.600957 TCTCGAACGAACGACAAGAGT 59.399 47.619 0.14 0.00 37.37 3.24
1789 3974 1.050767 GGTCTCGAACGAACGACAAG 58.949 55.000 14.84 0.00 37.37 3.16
1795 3980 2.808321 GGGCGGTCTCGAACGAAC 60.808 66.667 8.76 0.00 45.97 3.95
1796 3981 2.552585 GATGGGCGGTCTCGAACGAA 62.553 60.000 8.76 0.00 45.97 3.85
1799 3984 0.876342 GATGATGGGCGGTCTCGAAC 60.876 60.000 0.00 0.00 39.00 3.95
1800 3985 1.326951 TGATGATGGGCGGTCTCGAA 61.327 55.000 0.00 0.00 39.00 3.71
1804 3989 0.839277 TGATTGATGATGGGCGGTCT 59.161 50.000 0.00 0.00 0.00 3.85
1805 3990 1.679139 TTGATTGATGATGGGCGGTC 58.321 50.000 0.00 0.00 0.00 4.79
1806 3991 1.958579 CATTGATTGATGATGGGCGGT 59.041 47.619 0.00 0.00 0.00 5.68
1807 3992 1.336517 GCATTGATTGATGATGGGCGG 60.337 52.381 0.00 0.00 0.00 6.13
1808 3993 1.336517 GGCATTGATTGATGATGGGCG 60.337 52.381 0.00 0.00 0.00 6.13
1809 3994 1.689813 TGGCATTGATTGATGATGGGC 59.310 47.619 0.00 0.00 0.00 5.36
1810 3995 2.963101 AGTGGCATTGATTGATGATGGG 59.037 45.455 0.00 0.00 0.00 4.00
1811 3996 3.634910 TGAGTGGCATTGATTGATGATGG 59.365 43.478 0.00 0.00 0.00 3.51
1812 3997 4.911514 TGAGTGGCATTGATTGATGATG 57.088 40.909 0.00 0.00 0.00 3.07
1813 3998 5.137551 TGATGAGTGGCATTGATTGATGAT 58.862 37.500 0.00 0.00 37.34 2.45
1815 4000 4.911514 TGATGAGTGGCATTGATTGATG 57.088 40.909 0.00 0.00 37.34 3.07
1817 4002 4.338012 AGTTGATGAGTGGCATTGATTGA 58.662 39.130 0.00 0.00 37.34 2.57
1818 4003 4.157105 TGAGTTGATGAGTGGCATTGATTG 59.843 41.667 0.00 0.00 37.34 2.67
1819 4004 4.338012 TGAGTTGATGAGTGGCATTGATT 58.662 39.130 0.00 0.00 37.34 2.57
1822 4007 3.442625 ACATGAGTTGATGAGTGGCATTG 59.557 43.478 0.00 0.00 37.34 2.82
1823 4008 3.693807 ACATGAGTTGATGAGTGGCATT 58.306 40.909 0.00 0.00 37.34 3.56
1825 4010 2.865119 ACATGAGTTGATGAGTGGCA 57.135 45.000 0.00 0.00 0.00 4.92
1826 4011 2.421424 GGAACATGAGTTGATGAGTGGC 59.579 50.000 0.00 0.00 38.30 5.01
1827 4012 3.947868 AGGAACATGAGTTGATGAGTGG 58.052 45.455 0.00 0.00 38.30 4.00
1828 4013 4.758674 ACAAGGAACATGAGTTGATGAGTG 59.241 41.667 0.00 0.00 38.30 3.51
1833 4018 4.641989 GGCATACAAGGAACATGAGTTGAT 59.358 41.667 0.00 0.00 38.30 2.57
1868 4053 9.224267 AGTGCCAAATAGACATGATGATATTAC 57.776 33.333 0.00 0.00 0.00 1.89
1870 4055 8.701908 AAGTGCCAAATAGACATGATGATATT 57.298 30.769 0.00 0.84 0.00 1.28
1872 4057 9.276590 CTTAAGTGCCAAATAGACATGATGATA 57.723 33.333 0.00 0.00 0.00 2.15
1874 4059 7.066163 CACTTAAGTGCCAAATAGACATGATGA 59.934 37.037 22.03 0.00 39.39 2.92
1875 4060 7.191551 CACTTAAGTGCCAAATAGACATGATG 58.808 38.462 22.03 0.00 39.39 3.07
1913 4128 9.950306 AGAGGCTTATGGTGATAGATAGATAAT 57.050 33.333 0.00 0.00 0.00 1.28
1923 4138 7.295340 TGTAGTAGAAGAGGCTTATGGTGATA 58.705 38.462 0.00 0.00 0.00 2.15
1924 4139 6.136857 TGTAGTAGAAGAGGCTTATGGTGAT 58.863 40.000 0.00 0.00 0.00 3.06
1925 4140 5.516044 TGTAGTAGAAGAGGCTTATGGTGA 58.484 41.667 0.00 0.00 0.00 4.02
1935 4150 5.723672 TTTCACCACTGTAGTAGAAGAGG 57.276 43.478 0.00 0.00 0.00 3.69
1952 4179 5.730550 TGTCTGGGTGTCATAGTATTTCAC 58.269 41.667 6.12 6.12 0.00 3.18
1953 4180 5.719563 TCTGTCTGGGTGTCATAGTATTTCA 59.280 40.000 0.00 0.00 0.00 2.69
1954 4181 6.222038 TCTGTCTGGGTGTCATAGTATTTC 57.778 41.667 0.00 0.00 0.00 2.17
1955 4182 6.814954 ATCTGTCTGGGTGTCATAGTATTT 57.185 37.500 0.00 0.00 0.00 1.40
1957 4184 5.070981 CCAATCTGTCTGGGTGTCATAGTAT 59.929 44.000 0.00 0.00 0.00 2.12
1961 4188 3.181329 ACCAATCTGTCTGGGTGTCATA 58.819 45.455 0.00 0.00 38.36 2.15
1963 4190 1.434188 ACCAATCTGTCTGGGTGTCA 58.566 50.000 0.00 0.00 38.36 3.58
1964 4191 3.914426 ATACCAATCTGTCTGGGTGTC 57.086 47.619 0.00 0.00 38.36 3.67
1965 4192 4.080526 GGTAATACCAATCTGTCTGGGTGT 60.081 45.833 4.24 0.00 38.42 4.16
1966 4193 4.164221 AGGTAATACCAATCTGTCTGGGTG 59.836 45.833 12.54 0.00 41.95 4.61
1967 4194 4.371681 AGGTAATACCAATCTGTCTGGGT 58.628 43.478 12.54 0.00 41.95 4.51
1968 4195 5.855045 GTAGGTAATACCAATCTGTCTGGG 58.145 45.833 12.54 0.00 41.95 4.45
1991 4218 1.006102 GCGTCCGTCCCATATGAGG 60.006 63.158 3.65 4.07 0.00 3.86
1992 4219 1.006102 GGCGTCCGTCCCATATGAG 60.006 63.158 3.65 0.00 0.00 2.90
1993 4220 1.046472 AAGGCGTCCGTCCCATATGA 61.046 55.000 3.65 0.00 0.00 2.15
1994 4221 0.677288 TAAGGCGTCCGTCCCATATG 59.323 55.000 0.00 0.00 0.00 1.78
1995 4222 0.966920 CTAAGGCGTCCGTCCCATAT 59.033 55.000 0.00 0.00 0.00 1.78
1996 4223 1.111116 CCTAAGGCGTCCGTCCCATA 61.111 60.000 0.00 0.00 0.00 2.74
1997 4224 2.432300 CCTAAGGCGTCCGTCCCAT 61.432 63.158 0.00 0.00 0.00 4.00
1998 4225 3.072468 CCTAAGGCGTCCGTCCCA 61.072 66.667 0.00 0.00 0.00 4.37
1999 4226 2.294132 CTTCCTAAGGCGTCCGTCCC 62.294 65.000 0.00 0.00 0.00 4.46
2002 4229 3.295800 CCTTCCTAAGGCGTCCGT 58.704 61.111 0.00 0.00 42.78 4.69
2010 4237 5.104259 AGGCAGTAACATTCCTTCCTAAG 57.896 43.478 0.00 0.00 0.00 2.18
2011 4238 5.486063 TGTAGGCAGTAACATTCCTTCCTAA 59.514 40.000 0.00 0.00 0.00 2.69
2012 4239 5.027460 TGTAGGCAGTAACATTCCTTCCTA 58.973 41.667 0.00 0.00 0.00 2.94
2013 4240 3.844211 TGTAGGCAGTAACATTCCTTCCT 59.156 43.478 0.00 0.00 0.00 3.36
2014 4241 3.939592 GTGTAGGCAGTAACATTCCTTCC 59.060 47.826 0.00 0.00 0.00 3.46
2015 4242 4.833390 AGTGTAGGCAGTAACATTCCTTC 58.167 43.478 0.00 0.00 0.00 3.46
2016 4243 4.532521 AGAGTGTAGGCAGTAACATTCCTT 59.467 41.667 0.00 0.00 34.03 3.36
2036 4263 4.065321 ACAAGACACCTTCAGTTGAGAG 57.935 45.455 0.00 0.00 0.00 3.20
2038 4265 4.985409 GTCTACAAGACACCTTCAGTTGAG 59.015 45.833 2.22 0.00 44.45 3.02
2039 4266 4.945246 GTCTACAAGACACCTTCAGTTGA 58.055 43.478 2.22 0.00 44.45 3.18
2058 4287 1.002868 GCAGCAGGGATGTGTGTCT 60.003 57.895 0.00 0.00 0.00 3.41
2059 4288 0.679002 ATGCAGCAGGGATGTGTGTC 60.679 55.000 0.00 0.00 0.00 3.67
2063 4292 1.134367 CTTTCATGCAGCAGGGATGTG 59.866 52.381 7.31 0.00 44.87 3.21
2110 4346 6.894103 ACCTTGAGAAGATAATGCCAAGATTT 59.106 34.615 0.00 0.00 34.57 2.17
2260 4497 5.245531 TGTTACCTGAAGTAGAATGCTTGG 58.754 41.667 0.00 0.00 42.58 3.61
2349 4587 3.246619 GCGTAGAGGAGAGTTGAAGTTG 58.753 50.000 0.00 0.00 0.00 3.16
2355 4593 1.618861 CAACGCGTAGAGGAGAGTTG 58.381 55.000 14.46 0.00 40.52 3.16
2367 4609 3.209097 AGTTTGCCTGCAACGCGT 61.209 55.556 5.58 5.58 35.46 6.01
2386 4628 3.190849 CGACACGGATGGCAGCTG 61.191 66.667 10.57 10.57 30.51 4.24
2516 4758 2.241941 TGGTAACAGGCACCATCATGAT 59.758 45.455 1.18 1.18 46.17 2.45
2517 4759 1.632920 TGGTAACAGGCACCATCATGA 59.367 47.619 0.00 0.00 46.17 3.07
2560 4813 7.856492 TTGCTCATAATGCGCATAAATTAAG 57.144 32.000 25.61 18.25 37.96 1.85
2561 4814 7.328982 CCATTGCTCATAATGCGCATAAATTAA 59.671 33.333 25.61 13.21 37.96 1.40
2562 4815 6.807720 CCATTGCTCATAATGCGCATAAATTA 59.192 34.615 25.61 13.67 37.96 1.40
2563 4816 5.636121 CCATTGCTCATAATGCGCATAAATT 59.364 36.000 25.61 11.59 37.96 1.82
2589 4864 6.433847 TCTGAATCCAGTTAAGGAGTGAAA 57.566 37.500 0.00 0.00 41.90 2.69
2590 4865 6.183361 TGTTCTGAATCCAGTTAAGGAGTGAA 60.183 38.462 0.00 0.00 41.90 3.18
2591 4866 5.306937 TGTTCTGAATCCAGTTAAGGAGTGA 59.693 40.000 0.00 0.00 41.90 3.41
2592 4867 5.551233 TGTTCTGAATCCAGTTAAGGAGTG 58.449 41.667 0.00 0.00 41.90 3.51
2593 4868 5.308237 ACTGTTCTGAATCCAGTTAAGGAGT 59.692 40.000 7.60 0.00 41.90 3.85
2594 4869 5.641209 CACTGTTCTGAATCCAGTTAAGGAG 59.359 44.000 10.04 0.00 41.90 3.69
2782 5065 7.250032 ACCTATAAAAAGTACGGGAGTCTTT 57.750 36.000 0.00 0.00 45.66 2.52
2976 5264 3.763360 TGGCATTGGAAAGTGGAACATAG 59.237 43.478 0.00 0.00 44.52 2.23
3263 5555 8.794335 AATTCTCTTTTACTCAGATTACACCC 57.206 34.615 0.00 0.00 0.00 4.61
3278 5570 9.231297 TCGAATTGACTTCCATAATTCTCTTTT 57.769 29.630 0.00 0.00 38.20 2.27
3279 5571 8.669243 GTCGAATTGACTTCCATAATTCTCTTT 58.331 33.333 0.00 0.00 44.58 2.52
3551 5843 3.005897 AGCCCAGTATTATGAGCACTACG 59.994 47.826 0.00 0.00 0.00 3.51
3557 5849 2.880890 CCAACAGCCCAGTATTATGAGC 59.119 50.000 0.00 0.00 0.00 4.26
3598 5890 1.489230 ACAAAAGTGAACGGAGGGAGT 59.511 47.619 0.00 0.00 0.00 3.85
3599 5891 2.256117 ACAAAAGTGAACGGAGGGAG 57.744 50.000 0.00 0.00 0.00 4.30
3600 5892 3.135167 ACTTACAAAAGTGAACGGAGGGA 59.865 43.478 0.00 0.00 44.40 4.20
3601 5893 3.473625 ACTTACAAAAGTGAACGGAGGG 58.526 45.455 0.00 0.00 44.40 4.30
3602 5894 4.124238 TGACTTACAAAAGTGAACGGAGG 58.876 43.478 0.00 0.00 46.09 4.30
3603 5895 5.924475 ATGACTTACAAAAGTGAACGGAG 57.076 39.130 0.00 0.00 46.09 4.63
3604 5896 6.316640 TGAAATGACTTACAAAAGTGAACGGA 59.683 34.615 0.00 0.00 46.09 4.69
3605 5897 6.491394 TGAAATGACTTACAAAAGTGAACGG 58.509 36.000 0.00 0.00 46.09 4.44
3606 5898 7.373441 GTCTGAAATGACTTACAAAAGTGAACG 59.627 37.037 0.00 0.00 46.09 3.95
3607 5899 8.181573 TGTCTGAAATGACTTACAAAAGTGAAC 58.818 33.333 0.00 0.00 46.09 3.18
3608 5900 8.275015 TGTCTGAAATGACTTACAAAAGTGAA 57.725 30.769 0.00 0.00 46.09 3.18
3609 5901 7.467267 GCTGTCTGAAATGACTTACAAAAGTGA 60.467 37.037 0.00 0.00 46.09 3.41
3610 5902 6.634436 GCTGTCTGAAATGACTTACAAAAGTG 59.366 38.462 0.00 0.00 46.09 3.16
3612 5904 6.963796 AGCTGTCTGAAATGACTTACAAAAG 58.036 36.000 0.00 0.00 37.79 2.27
3613 5905 6.542005 TGAGCTGTCTGAAATGACTTACAAAA 59.458 34.615 0.00 0.00 37.79 2.44
3614 5906 6.054941 TGAGCTGTCTGAAATGACTTACAAA 58.945 36.000 0.00 0.00 37.79 2.83
3615 5907 5.610398 TGAGCTGTCTGAAATGACTTACAA 58.390 37.500 0.00 0.00 37.79 2.41
3616 5908 5.213891 TGAGCTGTCTGAAATGACTTACA 57.786 39.130 0.00 0.00 37.79 2.41
3617 5909 6.545504 TTTGAGCTGTCTGAAATGACTTAC 57.454 37.500 0.00 0.00 37.79 2.34
3618 5910 7.308770 CCATTTTGAGCTGTCTGAAATGACTTA 60.309 37.037 13.84 0.00 38.18 2.24
3619 5911 6.444633 CATTTTGAGCTGTCTGAAATGACTT 58.555 36.000 0.00 0.00 38.18 3.01
3620 5912 5.048224 CCATTTTGAGCTGTCTGAAATGACT 60.048 40.000 13.84 0.00 38.18 3.41
3621 5913 5.159209 CCATTTTGAGCTGTCTGAAATGAC 58.841 41.667 13.84 0.00 38.18 3.06
3622 5914 4.219070 CCCATTTTGAGCTGTCTGAAATGA 59.781 41.667 13.84 0.00 38.18 2.57
3623 5915 4.021719 ACCCATTTTGAGCTGTCTGAAATG 60.022 41.667 0.00 0.57 37.04 2.32
3624 5916 4.154942 ACCCATTTTGAGCTGTCTGAAAT 58.845 39.130 0.00 0.00 0.00 2.17
3625 5917 3.565307 ACCCATTTTGAGCTGTCTGAAA 58.435 40.909 0.00 0.00 0.00 2.69
3626 5918 3.228188 ACCCATTTTGAGCTGTCTGAA 57.772 42.857 0.00 0.00 0.00 3.02
3627 5919 2.886523 CAACCCATTTTGAGCTGTCTGA 59.113 45.455 0.00 0.00 0.00 3.27
3628 5920 2.624838 ACAACCCATTTTGAGCTGTCTG 59.375 45.455 0.00 0.00 0.00 3.51
3629 5921 2.949447 ACAACCCATTTTGAGCTGTCT 58.051 42.857 0.00 0.00 0.00 3.41
3630 5922 3.733443 AACAACCCATTTTGAGCTGTC 57.267 42.857 0.00 0.00 0.00 3.51
3631 5923 4.190772 CAAAACAACCCATTTTGAGCTGT 58.809 39.130 0.00 0.00 45.75 4.40
3632 5924 3.002553 GCAAAACAACCCATTTTGAGCTG 59.997 43.478 13.00 0.00 45.75 4.24
3633 5925 3.205338 GCAAAACAACCCATTTTGAGCT 58.795 40.909 13.00 0.00 45.75 4.09
3634 5926 2.941720 TGCAAAACAACCCATTTTGAGC 59.058 40.909 13.00 1.18 45.75 4.26
3635 5927 3.937706 TGTGCAAAACAACCCATTTTGAG 59.062 39.130 13.00 0.00 45.75 3.02
3636 5928 3.942829 TGTGCAAAACAACCCATTTTGA 58.057 36.364 13.00 0.00 45.75 2.69
3637 5929 4.897025 ATGTGCAAAACAACCCATTTTG 57.103 36.364 5.96 5.96 45.68 2.44
3638 5930 4.704057 ACAATGTGCAAAACAACCCATTTT 59.296 33.333 0.00 0.00 43.61 1.82
3639 5931 4.268359 ACAATGTGCAAAACAACCCATTT 58.732 34.783 0.00 0.00 43.61 2.32
3640 5932 3.876320 GACAATGTGCAAAACAACCCATT 59.124 39.130 0.00 0.00 43.61 3.16
3641 5933 3.134442 AGACAATGTGCAAAACAACCCAT 59.866 39.130 0.00 0.00 43.61 4.00
3642 5934 2.499289 AGACAATGTGCAAAACAACCCA 59.501 40.909 0.00 0.00 43.61 4.51
3643 5935 3.123050 GAGACAATGTGCAAAACAACCC 58.877 45.455 0.00 0.00 43.61 4.11
3644 5936 4.045636 AGAGACAATGTGCAAAACAACC 57.954 40.909 0.00 0.00 43.61 3.77
3645 5937 6.697019 ACATTAGAGACAATGTGCAAAACAAC 59.303 34.615 0.00 0.00 45.22 3.32
3646 5938 6.804677 ACATTAGAGACAATGTGCAAAACAA 58.195 32.000 0.00 0.00 45.22 2.83
3647 5939 6.262944 AGACATTAGAGACAATGTGCAAAACA 59.737 34.615 6.22 0.00 46.53 2.83
3648 5940 6.672147 AGACATTAGAGACAATGTGCAAAAC 58.328 36.000 6.22 0.00 46.53 2.43
3649 5941 6.882610 AGACATTAGAGACAATGTGCAAAA 57.117 33.333 6.22 0.00 46.53 2.44
3650 5942 6.882610 AAGACATTAGAGACAATGTGCAAA 57.117 33.333 6.22 0.00 46.53 3.68
3651 5943 6.882610 AAAGACATTAGAGACAATGTGCAA 57.117 33.333 6.22 0.00 46.53 4.08
3652 5944 7.119699 CCTTAAAGACATTAGAGACAATGTGCA 59.880 37.037 6.22 0.00 46.53 4.57
3653 5945 7.119846 ACCTTAAAGACATTAGAGACAATGTGC 59.880 37.037 6.22 0.00 46.53 4.57
3654 5946 8.553459 ACCTTAAAGACATTAGAGACAATGTG 57.447 34.615 6.22 0.00 46.53 3.21
3656 5948 9.442047 AAGACCTTAAAGACATTAGAGACAATG 57.558 33.333 0.00 0.00 40.93 2.82
3673 5965 9.720769 CCTCTGTTCACTTTTATAAGACCTTAA 57.279 33.333 0.00 0.00 35.30 1.85
3674 5966 8.319146 CCCTCTGTTCACTTTTATAAGACCTTA 58.681 37.037 0.00 0.00 35.30 2.69
3675 5967 7.017254 TCCCTCTGTTCACTTTTATAAGACCTT 59.983 37.037 0.00 0.00 35.30 3.50
3676 5968 6.500751 TCCCTCTGTTCACTTTTATAAGACCT 59.499 38.462 0.00 0.00 35.30 3.85
3677 5969 6.708285 TCCCTCTGTTCACTTTTATAAGACC 58.292 40.000 0.00 0.00 35.30 3.85
3678 5970 6.314152 GCTCCCTCTGTTCACTTTTATAAGAC 59.686 42.308 0.00 0.00 35.30 3.01
3679 5971 6.013725 TGCTCCCTCTGTTCACTTTTATAAGA 60.014 38.462 0.00 0.00 35.30 2.10
3680 5972 6.173339 TGCTCCCTCTGTTCACTTTTATAAG 58.827 40.000 0.00 0.00 37.40 1.73
3681 5973 6.121776 TGCTCCCTCTGTTCACTTTTATAA 57.878 37.500 0.00 0.00 0.00 0.98
3682 5974 5.248477 ACTGCTCCCTCTGTTCACTTTTATA 59.752 40.000 0.00 0.00 0.00 0.98
3683 5975 4.042187 ACTGCTCCCTCTGTTCACTTTTAT 59.958 41.667 0.00 0.00 0.00 1.40
3684 5976 3.391296 ACTGCTCCCTCTGTTCACTTTTA 59.609 43.478 0.00 0.00 0.00 1.52
3685 5977 2.173569 ACTGCTCCCTCTGTTCACTTTT 59.826 45.455 0.00 0.00 0.00 2.27
3686 5978 1.771255 ACTGCTCCCTCTGTTCACTTT 59.229 47.619 0.00 0.00 0.00 2.66
3687 5979 1.428869 ACTGCTCCCTCTGTTCACTT 58.571 50.000 0.00 0.00 0.00 3.16
3688 5980 1.428869 AACTGCTCCCTCTGTTCACT 58.571 50.000 0.00 0.00 0.00 3.41
3689 5981 2.262423 AAACTGCTCCCTCTGTTCAC 57.738 50.000 0.00 0.00 0.00 3.18
3690 5982 4.431416 TTAAAACTGCTCCCTCTGTTCA 57.569 40.909 0.00 0.00 0.00 3.18
3691 5983 5.335976 CCAATTAAAACTGCTCCCTCTGTTC 60.336 44.000 0.00 0.00 0.00 3.18
3692 5984 4.524328 CCAATTAAAACTGCTCCCTCTGTT 59.476 41.667 0.00 0.00 0.00 3.16
3693 5985 4.082125 CCAATTAAAACTGCTCCCTCTGT 58.918 43.478 0.00 0.00 0.00 3.41
3694 5986 4.335416 TCCAATTAAAACTGCTCCCTCTG 58.665 43.478 0.00 0.00 0.00 3.35
3695 5987 4.657814 TCCAATTAAAACTGCTCCCTCT 57.342 40.909 0.00 0.00 0.00 3.69
3696 5988 4.522789 TGTTCCAATTAAAACTGCTCCCTC 59.477 41.667 4.36 0.00 0.00 4.30
3697 5989 4.479158 TGTTCCAATTAAAACTGCTCCCT 58.521 39.130 4.36 0.00 0.00 4.20
3698 5990 4.864704 TGTTCCAATTAAAACTGCTCCC 57.135 40.909 4.36 0.00 0.00 4.30
3699 5991 7.546778 TTTTTGTTCCAATTAAAACTGCTCC 57.453 32.000 4.36 0.00 0.00 4.70
3701 5993 9.271828 CCTATTTTTGTTCCAATTAAAACTGCT 57.728 29.630 4.36 0.00 0.00 4.24
3702 5994 9.267084 TCCTATTTTTGTTCCAATTAAAACTGC 57.733 29.630 4.36 0.00 0.00 4.40
3774 6066 8.412456 CAAAATGGCAATAATGTACCTACATCA 58.588 33.333 0.00 0.00 45.55 3.07
3898 6206 3.315191 ACCGACCAATGAACAAACTTCTG 59.685 43.478 0.00 0.00 0.00 3.02
3900 6208 3.982576 ACCGACCAATGAACAAACTTC 57.017 42.857 0.00 0.00 0.00 3.01
3901 6209 3.445805 ACAACCGACCAATGAACAAACTT 59.554 39.130 0.00 0.00 0.00 2.66
3902 6210 3.020984 ACAACCGACCAATGAACAAACT 58.979 40.909 0.00 0.00 0.00 2.66
3903 6211 3.112580 CACAACCGACCAATGAACAAAC 58.887 45.455 0.00 0.00 0.00 2.93
3904 6212 2.099921 CCACAACCGACCAATGAACAAA 59.900 45.455 0.00 0.00 0.00 2.83
3918 6226 2.615493 CCTACACCATGAGTCCACAACC 60.615 54.545 0.00 0.00 0.00 3.77
4299 6910 6.742109 ACAAGGTCAAAAAGATCAATGAGTG 58.258 36.000 0.00 0.00 0.00 3.51
4300 6911 6.966534 ACAAGGTCAAAAAGATCAATGAGT 57.033 33.333 0.00 0.00 0.00 3.41
4301 6912 7.535258 CGTAACAAGGTCAAAAAGATCAATGAG 59.465 37.037 0.00 0.00 0.00 2.90
4306 6917 4.023536 GGCGTAACAAGGTCAAAAAGATCA 60.024 41.667 0.00 0.00 0.00 2.92
4317 6928 7.436118 TCTAAATAATATCGGCGTAACAAGGT 58.564 34.615 6.85 0.00 0.00 3.50
4522 7145 2.467826 GCCTTGTCGAGCAGCCATC 61.468 63.158 0.00 0.00 0.00 3.51
4722 7345 6.801575 TGATGACGCATTTAGTAGTATGTCA 58.198 36.000 0.00 0.00 39.18 3.58
4774 7463 7.155328 TGACAAGATCCTTCAGTTAGAGAAAC 58.845 38.462 0.00 0.00 38.46 2.78
4811 7500 3.268023 AGTTAGCCTGCACTTATGGAC 57.732 47.619 0.00 0.00 0.00 4.02
4910 7599 6.326064 AGAAGTATGTATCACCTGCAGAGAAT 59.674 38.462 17.39 7.57 0.00 2.40
5363 9219 5.130145 ACCAGGATCTATATATGAAGCTGGC 59.870 44.000 0.00 0.00 0.00 4.85
5382 9244 4.923415 ACCAATAGGAAGAAAGAACCAGG 58.077 43.478 0.00 0.00 38.69 4.45
5383 9245 5.560724 TGACCAATAGGAAGAAAGAACCAG 58.439 41.667 0.00 0.00 38.69 4.00
5384 9246 5.576563 TGACCAATAGGAAGAAAGAACCA 57.423 39.130 0.00 0.00 38.69 3.67
5385 9247 5.358160 CCATGACCAATAGGAAGAAAGAACC 59.642 44.000 0.00 0.00 38.69 3.62
5386 9248 6.180472 TCCATGACCAATAGGAAGAAAGAAC 58.820 40.000 0.00 0.00 38.69 3.01
5506 9368 0.385390 GTGTTGTCAAACCAGCCCAG 59.615 55.000 0.00 0.00 35.25 4.45
5777 9694 0.527113 TGCATGGCAGGTTCAATTCG 59.473 50.000 0.00 0.00 33.32 3.34
5781 9698 0.901114 AGCATGCATGGCAGGTTCAA 60.901 50.000 27.34 0.00 43.65 2.69
5869 13618 3.728845 AGTGCAAAGTACAGTGGTAGTG 58.271 45.455 0.00 0.00 33.44 2.74
5870 13619 4.417426 AAGTGCAAAGTACAGTGGTAGT 57.583 40.909 0.00 0.00 34.60 2.73
5871 13620 8.440833 GTTATTAAGTGCAAAGTACAGTGGTAG 58.559 37.037 0.00 0.00 0.00 3.18
5872 13621 7.932491 TGTTATTAAGTGCAAAGTACAGTGGTA 59.068 33.333 0.00 0.00 0.00 3.25
5873 13622 6.768861 TGTTATTAAGTGCAAAGTACAGTGGT 59.231 34.615 0.00 0.00 0.00 4.16
5874 13623 7.197071 TGTTATTAAGTGCAAAGTACAGTGG 57.803 36.000 0.00 0.00 0.00 4.00
5933 13682 8.319146 GGCACCACTATACCATTACATATTAGT 58.681 37.037 0.00 0.00 0.00 2.24
6340 14248 9.874205 TCACATCAATGGAAAAAGGATTTATTC 57.126 29.630 0.00 0.00 37.28 1.75
6343 14251 7.765360 GCATCACATCAATGGAAAAAGGATTTA 59.235 33.333 0.00 0.00 37.28 1.40
7059 15104 5.592688 TCCACTCTTCATTTTCCTCGTTTTT 59.407 36.000 0.00 0.00 0.00 1.94
7091 15136 3.703052 GCAAATCCAAATCACCATCCTCT 59.297 43.478 0.00 0.00 0.00 3.69
7128 15173 9.308000 CCAGATCTACCTTCAACTCTCTTATAT 57.692 37.037 0.00 0.00 0.00 0.86
7130 15175 6.041523 GCCAGATCTACCTTCAACTCTCTTAT 59.958 42.308 0.00 0.00 0.00 1.73
7131 15176 5.361285 GCCAGATCTACCTTCAACTCTCTTA 59.639 44.000 0.00 0.00 0.00 2.10
7132 15177 4.161377 GCCAGATCTACCTTCAACTCTCTT 59.839 45.833 0.00 0.00 0.00 2.85
7133 15178 3.704061 GCCAGATCTACCTTCAACTCTCT 59.296 47.826 0.00 0.00 0.00 3.10
7134 15179 3.181470 GGCCAGATCTACCTTCAACTCTC 60.181 52.174 0.00 0.00 0.00 3.20
7135 15180 2.769095 GGCCAGATCTACCTTCAACTCT 59.231 50.000 0.00 0.00 0.00 3.24
7136 15181 2.769095 AGGCCAGATCTACCTTCAACTC 59.231 50.000 5.01 0.00 0.00 3.01
7197 15391 5.436175 TGATGGTCAATTTCATACCGACAT 58.564 37.500 0.00 0.00 35.98 3.06
7222 15416 4.462483 TCATAAAATGGCAAAGAGACCCAC 59.538 41.667 0.00 0.00 0.00 4.61
7224 15418 5.594926 CATCATAAAATGGCAAAGAGACCC 58.405 41.667 0.00 0.00 0.00 4.46
7337 15531 8.736097 ACTCCATGTGTCCCATAATACTATAA 57.264 34.615 0.00 0.00 30.71 0.98
7338 15532 9.831682 TTACTCCATGTGTCCCATAATACTATA 57.168 33.333 0.00 0.00 30.71 1.31
7339 15533 8.736097 TTACTCCATGTGTCCCATAATACTAT 57.264 34.615 0.00 0.00 30.71 2.12
7340 15534 8.736097 ATTACTCCATGTGTCCCATAATACTA 57.264 34.615 0.00 0.00 30.71 1.82
7341 15535 7.633018 ATTACTCCATGTGTCCCATAATACT 57.367 36.000 0.00 0.00 30.71 2.12
7342 15536 7.936847 TCAATTACTCCATGTGTCCCATAATAC 59.063 37.037 0.00 0.00 30.71 1.89
7429 15623 2.076863 GAGTGGAGGATTTTGACGTGG 58.923 52.381 0.00 0.00 0.00 4.94
7474 15668 2.439553 AAAGGGCAGGAATTGGGCGA 62.440 55.000 0.00 0.00 0.00 5.54
7484 15678 1.304464 GGTGGGAGAAAAGGGCAGG 60.304 63.158 0.00 0.00 0.00 4.85
7523 15717 0.652592 CTCCGACGGTTTCATGCATC 59.347 55.000 14.79 0.00 0.00 3.91
7538 15732 2.094700 TCCATCTTCGACAAGTTCTCCG 60.095 50.000 0.00 0.00 0.00 4.63
7568 15762 1.760086 CTCGGATCCTCCAGCACCT 60.760 63.158 10.75 0.00 35.91 4.00
7574 15768 1.738346 CGTGATGCTCGGATCCTCCA 61.738 60.000 10.75 4.25 35.91 3.86
7576 15770 1.663074 GCGTGATGCTCGGATCCTC 60.663 63.158 10.75 0.08 41.73 3.71
7596 15790 1.153568 CGAGCTGATCTTTCGGGCA 60.154 57.895 0.00 0.00 0.00 5.36
7701 15895 2.351276 GTCCGCCACAACCTCCAT 59.649 61.111 0.00 0.00 0.00 3.41
7727 15921 4.111016 TCTGCCACGACCGCTACG 62.111 66.667 0.00 0.00 0.00 3.51
7742 15936 2.524394 ACCCGTCTGGCAGTGTCT 60.524 61.111 15.27 0.00 37.83 3.41
7759 15953 0.833949 TTGTCTGTACTGTGGGTGCA 59.166 50.000 0.00 0.00 38.18 4.57
7760 15954 1.226746 GTTGTCTGTACTGTGGGTGC 58.773 55.000 0.00 0.00 0.00 5.01
7795 15989 3.626924 ACTGACTGGCACCCGTCC 61.627 66.667 8.54 0.00 0.00 4.79
7833 16027 0.249826 CATGGCTTGCCGTTTTGGTT 60.250 50.000 3.24 0.00 41.21 3.67
7877 16071 2.114670 CATCGGGGTGCGCAAGAAT 61.115 57.895 14.00 0.00 43.02 2.40
7881 16075 2.045438 AATCATCGGGGTGCGCAA 60.045 55.556 14.00 0.00 0.00 4.85
7884 16078 2.016961 CTTGAATCATCGGGGTGCG 58.983 57.895 0.00 0.00 0.00 5.34
7891 16085 0.179073 ACGGGAGGCTTGAATCATCG 60.179 55.000 0.00 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.