Multiple sequence alignment - TraesCS6A01G418700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G418700 chr6A 100.000 9865 0 0 1 9865 616507639 616497775 0 18218
1 TraesCS6A01G418700 chr6A 97.278 4518 114 8 3621 8131 592755732 592760247 0 7653
2 TraesCS6A01G418700 chr6A 96.896 4511 129 9 3621 8126 610012822 610008318 0 7544
3 TraesCS6A01G418700 chr6A 97.186 2132 52 5 1501 3629 12437981 12440107 0 3598
4 TraesCS6A01G418700 chr6A 97.183 2130 52 5 1500 3626 50005309 50007433 0 3594
5 TraesCS6A01G418700 chr6A 96.856 2131 56 8 1502 3629 592751525 592753647 0 3554
6 TraesCS6A01G418700 chr6A 95.982 1742 65 4 8127 9865 594024396 594026135 0 2824
7 TraesCS6A01G418700 chr6A 96.146 1505 55 2 1 1502 594022897 594024401 0 2455
8 TraesCS6A01G418700 chr4A 96.860 4522 135 7 3621 8136 458543444 458547964 0 7557
9 TraesCS6A01G418700 chr5A 96.875 4512 133 8 3621 8126 666901226 666896717 0 7544
10 TraesCS6A01G418700 chr5A 95.841 1731 67 4 8137 9865 689844866 689843139 0 2793
11 TraesCS6A01G418700 chr5A 95.615 1505 64 2 1 1503 689846372 689844868 0 2412
12 TraesCS6A01G418700 chr3A 96.851 4510 132 9 3621 8126 684223254 684227757 0 7533
13 TraesCS6A01G418700 chr3A 96.783 1741 54 1 8127 9865 535604659 535606399 0 2904
14 TraesCS6A01G418700 chr7A 96.851 4509 133 8 3621 8126 3885351 3880849 0 7531
15 TraesCS6A01G418700 chr7A 96.808 4511 129 9 3621 8126 720342005 720337505 0 7518
16 TraesCS6A01G418700 chr7A 96.718 4510 141 7 3621 8126 580404780 580409286 0 7502
17 TraesCS6A01G418700 chr7A 97.095 2134 54 5 1499 3629 3898293 3896165 0 3591
18 TraesCS6A01G418700 chr7A 96.809 2131 62 4 1502 3627 580400567 580402696 0 3554
19 TraesCS6A01G418700 chr7A 96.759 2129 62 5 1502 3627 580407555 580409679 0 3542
20 TraesCS6A01G418700 chr7A 96.613 1742 55 3 8127 9865 93312369 93314109 0 2887
21 TraesCS6A01G418700 chr7A 96.096 1742 62 5 8127 9865 499952214 499953952 0 2835
22 TraesCS6A01G418700 chr7A 95.289 1507 63 4 1 1502 93310871 93312374 0 2383
23 TraesCS6A01G418700 chr7A 95.333 1500 66 3 1 1498 499950718 499952215 0 2379
24 TraesCS6A01G418700 chr2A 96.585 4510 145 9 3621 8126 709873431 709868927 0 7467
25 TraesCS6A01G418700 chr2A 96.906 2133 60 6 1502 3629 776258669 776260800 0 3568
26 TraesCS6A01G418700 chr2A 96.898 2128 58 4 1502 3626 27697414 27699536 0 3557
27 TraesCS6A01G418700 chr2A 96.554 1741 57 2 8127 9865 697152544 697154283 0 2880
28 TraesCS6A01G418700 chr2A 96.381 1741 61 1 8127 9865 53574177 53572437 0 2865
29 TraesCS6A01G418700 chr2A 96.208 1503 56 1 1 1502 53575674 53574172 0 2459
30 TraesCS6A01G418700 chr2A 95.548 1505 59 3 1 1502 697151050 697152549 0 2401
31 TraesCS6A01G418700 chr1A 97.074 2119 54 8 1515 3629 483045349 483043235 0 3563
32 TraesCS6A01G418700 chr1A 96.094 1741 63 3 8127 9864 363601487 363599749 0 2833
33 TraesCS6A01G418700 chr1A 95.867 1742 69 2 8127 9865 118196839 118195098 0 2815
34 TraesCS6A01G418700 chr1A 96.069 1501 57 2 3 1502 118198333 118196834 0 2444
35 TraesCS6A01G418700 chrUn 94.503 1510 71 6 1 1498 92657261 92658770 0 2318
36 TraesCS6A01G418700 chr6D 94.184 1513 75 6 2 1502 437005274 437006785 0 2294


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G418700 chr6A 616497775 616507639 9864 True 18218.0 18218 100.0000 1 9865 1 chr6A.!!$R2 9864
1 TraesCS6A01G418700 chr6A 610008318 610012822 4504 True 7544.0 7544 96.8960 3621 8126 1 chr6A.!!$R1 4505
2 TraesCS6A01G418700 chr6A 592751525 592760247 8722 False 5603.5 7653 97.0670 1502 8131 2 chr6A.!!$F3 6629
3 TraesCS6A01G418700 chr6A 12437981 12440107 2126 False 3598.0 3598 97.1860 1501 3629 1 chr6A.!!$F1 2128
4 TraesCS6A01G418700 chr6A 50005309 50007433 2124 False 3594.0 3594 97.1830 1500 3626 1 chr6A.!!$F2 2126
5 TraesCS6A01G418700 chr6A 594022897 594026135 3238 False 2639.5 2824 96.0640 1 9865 2 chr6A.!!$F4 9864
6 TraesCS6A01G418700 chr4A 458543444 458547964 4520 False 7557.0 7557 96.8600 3621 8136 1 chr4A.!!$F1 4515
7 TraesCS6A01G418700 chr5A 666896717 666901226 4509 True 7544.0 7544 96.8750 3621 8126 1 chr5A.!!$R1 4505
8 TraesCS6A01G418700 chr5A 689843139 689846372 3233 True 2602.5 2793 95.7280 1 9865 2 chr5A.!!$R2 9864
9 TraesCS6A01G418700 chr3A 684223254 684227757 4503 False 7533.0 7533 96.8510 3621 8126 1 chr3A.!!$F2 4505
10 TraesCS6A01G418700 chr3A 535604659 535606399 1740 False 2904.0 2904 96.7830 8127 9865 1 chr3A.!!$F1 1738
11 TraesCS6A01G418700 chr7A 3880849 3885351 4502 True 7531.0 7531 96.8510 3621 8126 1 chr7A.!!$R1 4505
12 TraesCS6A01G418700 chr7A 720337505 720342005 4500 True 7518.0 7518 96.8080 3621 8126 1 chr7A.!!$R3 4505
13 TraesCS6A01G418700 chr7A 580400567 580409679 9112 False 4866.0 7502 96.7620 1502 8126 3 chr7A.!!$F3 6624
14 TraesCS6A01G418700 chr7A 3896165 3898293 2128 True 3591.0 3591 97.0950 1499 3629 1 chr7A.!!$R2 2130
15 TraesCS6A01G418700 chr7A 93310871 93314109 3238 False 2635.0 2887 95.9510 1 9865 2 chr7A.!!$F1 9864
16 TraesCS6A01G418700 chr7A 499950718 499953952 3234 False 2607.0 2835 95.7145 1 9865 2 chr7A.!!$F2 9864
17 TraesCS6A01G418700 chr2A 709868927 709873431 4504 True 7467.0 7467 96.5850 3621 8126 1 chr2A.!!$R1 4505
18 TraesCS6A01G418700 chr2A 776258669 776260800 2131 False 3568.0 3568 96.9060 1502 3629 1 chr2A.!!$F2 2127
19 TraesCS6A01G418700 chr2A 27697414 27699536 2122 False 3557.0 3557 96.8980 1502 3626 1 chr2A.!!$F1 2124
20 TraesCS6A01G418700 chr2A 53572437 53575674 3237 True 2662.0 2865 96.2945 1 9865 2 chr2A.!!$R2 9864
21 TraesCS6A01G418700 chr2A 697151050 697154283 3233 False 2640.5 2880 96.0510 1 9865 2 chr2A.!!$F3 9864
22 TraesCS6A01G418700 chr1A 483043235 483045349 2114 True 3563.0 3563 97.0740 1515 3629 1 chr1A.!!$R2 2114
23 TraesCS6A01G418700 chr1A 363599749 363601487 1738 True 2833.0 2833 96.0940 8127 9864 1 chr1A.!!$R1 1737
24 TraesCS6A01G418700 chr1A 118195098 118198333 3235 True 2629.5 2815 95.9680 3 9865 2 chr1A.!!$R3 9862
25 TraesCS6A01G418700 chrUn 92657261 92658770 1509 False 2318.0 2318 94.5030 1 1498 1 chrUn.!!$F1 1497
26 TraesCS6A01G418700 chr6D 437005274 437006785 1511 False 2294.0 2294 94.1840 2 1502 1 chr6D.!!$F1 1500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
358 375 1.079127 AAGATTCGTGTCGCCTGGG 60.079 57.895 0.00 0.00 0.00 4.45 F
1546 1565 1.519408 AAATTTCCTACGCACACGCT 58.481 45.000 0.00 0.00 45.53 5.07 F
3351 3373 0.037232 GCTTAGTCAACGGGTCTGCT 60.037 55.000 0.00 0.00 0.00 4.24 F
3529 3551 0.032912 TGGACCCGATGCACTAGGTA 60.033 55.000 3.48 0.00 31.10 3.08 F
4382 11406 0.034059 CAGTTCCGCTTCCAGTGACT 59.966 55.000 0.00 0.00 0.00 3.41 F
4406 11430 0.397941 TGCCTGCAGTAGAAGCACTT 59.602 50.000 13.81 0.00 37.02 3.16 F
4438 11462 0.771755 AGGTCCAGACTTGGGTTTCC 59.228 55.000 0.00 0.00 45.10 3.13 F
5537 12561 1.218047 CCCGATCATCACGTGGTGT 59.782 57.895 27.10 15.24 34.79 4.16 F
6284 13308 0.322322 TTCGTCCAACAATACCGCCT 59.678 50.000 0.00 0.00 0.00 5.52 F
6700 13726 0.750850 TACTACCATCGCAGGGCTTC 59.249 55.000 0.00 0.00 0.00 3.86 F
6964 13990 0.759060 GAGAGAGAGAAGGAGGGGGC 60.759 65.000 0.00 0.00 0.00 5.80 F
7733 14763 1.202557 TCACCCAGTTACGTTGTGACC 60.203 52.381 0.00 0.00 31.45 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2024 2043 1.341531 CCACCTCGCGAATCCTATTCT 59.658 52.381 11.33 0.00 0.00 2.40 R
3510 3532 0.032912 TACCTAGTGCATCGGGTCCA 60.033 55.000 10.03 0.00 33.74 4.02 R
4767 11791 1.065564 AGCTGCAAGATGGAGGAGAAC 60.066 52.381 1.02 0.00 36.25 3.01 R
5147 12171 2.168496 GTAGATAGATGGCCCGTGCTA 58.832 52.381 0.00 0.00 37.74 3.49 R
5724 12748 0.179100 CATGACGGTGCTTCGGAGAT 60.179 55.000 0.00 0.00 35.04 2.75 R
6032 13056 0.310854 AGCAGCCACGTAAAACTTGC 59.689 50.000 0.00 0.00 0.00 4.01 R
6033 13057 2.411031 CGTAGCAGCCACGTAAAACTTG 60.411 50.000 5.07 0.00 34.74 3.16 R
6860 13886 0.039911 AGTAGGACTCCTTCTGGCGT 59.960 55.000 1.94 0.00 34.61 5.68 R
7197 14224 0.101399 AGATCACGGACATGACGAGC 59.899 55.000 18.41 0.99 34.93 5.03 R
8659 15694 1.155889 CACGCTACCTGCAACATCAA 58.844 50.000 0.00 0.00 43.06 2.57 R
8792 15827 2.223735 CCATGACTCGTAGGTTGCGTAT 60.224 50.000 0.00 0.00 0.00 3.06 R
9730 20891 1.344438 TCGGAAGCATGCCTATGGTAG 59.656 52.381 15.66 0.00 43.81 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
228 240 3.500343 TGAGGAGATCTTGTGTGAGTGA 58.500 45.455 0.00 0.00 0.00 3.41
358 375 1.079127 AAGATTCGTGTCGCCTGGG 60.079 57.895 0.00 0.00 0.00 4.45
474 493 4.637534 ACTCTGTGGATGCACAAATATGTC 59.362 41.667 21.10 0.00 37.82 3.06
502 521 1.674962 GGGCATGCATCTGAAGACTTC 59.325 52.381 21.36 8.34 0.00 3.01
680 699 2.895404 ACATTGGTCGTGTGGTAGTAGT 59.105 45.455 0.00 0.00 0.00 2.73
1043 1062 2.522436 TCCCCGTGGTGAGACGTT 60.522 61.111 0.00 0.00 37.66 3.99
1092 1111 2.747686 GTCCCCGGTCAGAAGCAA 59.252 61.111 0.00 0.00 0.00 3.91
1093 1112 1.671379 GTCCCCGGTCAGAAGCAAC 60.671 63.158 0.00 0.00 0.00 4.17
1227 1246 1.822990 CTCTACGGCTTGTACCCTCAA 59.177 52.381 0.00 0.00 0.00 3.02
1236 1255 4.384208 GGCTTGTACCCTCAATACATCAGT 60.384 45.833 0.00 0.00 32.70 3.41
1394 1413 6.316390 CCTCTCCGTGCTTCTGTTTAATTATT 59.684 38.462 0.00 0.00 0.00 1.40
1496 1515 5.684704 AGATTTTGAACTTGACTCACCAGA 58.315 37.500 0.00 0.00 0.00 3.86
1497 1516 6.302269 AGATTTTGAACTTGACTCACCAGAT 58.698 36.000 0.00 0.00 0.00 2.90
1546 1565 1.519408 AAATTTCCTACGCACACGCT 58.481 45.000 0.00 0.00 45.53 5.07
1570 1589 3.002038 TCATGGTGATGCATAGCAACA 57.998 42.857 8.42 8.42 45.07 3.33
2024 2043 4.296056 GACTTCTCCCCCAATCCTAGTTA 58.704 47.826 0.00 0.00 0.00 2.24
2061 2080 4.344104 AGGTGGAAAAGAGAGAGAGAGAG 58.656 47.826 0.00 0.00 0.00 3.20
2062 2081 4.044065 AGGTGGAAAAGAGAGAGAGAGAGA 59.956 45.833 0.00 0.00 0.00 3.10
2063 2082 4.399303 GGTGGAAAAGAGAGAGAGAGAGAG 59.601 50.000 0.00 0.00 0.00 3.20
2064 2083 5.253330 GTGGAAAAGAGAGAGAGAGAGAGA 58.747 45.833 0.00 0.00 0.00 3.10
2144 2166 3.655211 CAGCCCTGGCCACCTCTT 61.655 66.667 0.00 0.00 43.17 2.85
2235 2257 3.685836 GGTAAAATCCCGATTTCACCG 57.314 47.619 6.72 0.00 38.80 4.94
2441 2463 4.219725 TCGAGAACAATGTAGACATGACCA 59.780 41.667 0.00 0.00 36.56 4.02
2476 2498 3.805207 GTCAATAACCAATAGCGGGACT 58.195 45.455 0.00 0.00 0.00 3.85
2492 2514 2.424812 GGGACTTGGATGCCCATATTGT 60.425 50.000 0.00 0.00 43.12 2.71
2531 2553 4.202020 CGAAGATCTTTATCGGTCAGACCA 60.202 45.833 20.13 7.26 38.47 4.02
2625 2647 4.012374 ACCTAGTTCAATCTCGTTACCGA 58.988 43.478 0.00 0.00 41.73 4.69
2707 2729 4.470462 CTTGCAAGTCTTAAGTGATGTGC 58.530 43.478 18.65 7.27 32.65 4.57
2740 2762 1.611519 CCCTGAGATACCTCTCCGAC 58.388 60.000 0.47 0.00 46.28 4.79
2812 2834 1.257743 TGGAGACACCTGTAGAGCAC 58.742 55.000 0.00 0.00 39.86 4.40
2940 2962 7.642978 GTCATGAAGAAAGCAATAGCAACATAG 59.357 37.037 0.00 0.00 45.49 2.23
2990 3012 3.877559 TGGGTCATGTCAATCAGATCAC 58.122 45.455 0.00 0.00 0.00 3.06
3010 3032 5.674525 TCACTCAACTAATGATGTGATCCC 58.325 41.667 0.00 0.00 39.30 3.85
3029 3051 5.873179 TCCCGTTAATCAAATGACAACTC 57.127 39.130 7.65 0.00 0.00 3.01
3140 3162 7.624360 ATTCACACATGTATTATGTTTCCGT 57.376 32.000 0.00 0.00 0.00 4.69
3234 3256 4.646572 CCTCTAGGGCATATTTCCTTCAC 58.353 47.826 0.00 0.00 34.75 3.18
3308 3330 1.601419 CCCATGGAGCTTTGGTGCTG 61.601 60.000 15.22 0.00 44.17 4.41
3309 3331 0.609957 CCATGGAGCTTTGGTGCTGA 60.610 55.000 5.56 0.00 44.17 4.26
3310 3332 1.471119 CATGGAGCTTTGGTGCTGAT 58.529 50.000 0.00 0.00 44.17 2.90
3311 3333 1.404391 CATGGAGCTTTGGTGCTGATC 59.596 52.381 0.00 0.00 44.17 2.92
3312 3334 0.401356 TGGAGCTTTGGTGCTGATCA 59.599 50.000 0.00 0.00 44.17 2.92
3313 3335 1.005097 TGGAGCTTTGGTGCTGATCAT 59.995 47.619 0.00 0.00 44.17 2.45
3314 3336 1.404391 GGAGCTTTGGTGCTGATCATG 59.596 52.381 0.00 0.00 44.17 3.07
3315 3337 2.089980 GAGCTTTGGTGCTGATCATGT 58.910 47.619 0.00 0.00 44.17 3.21
3316 3338 2.490903 GAGCTTTGGTGCTGATCATGTT 59.509 45.455 0.00 0.00 44.17 2.71
3317 3339 2.895404 AGCTTTGGTGCTGATCATGTTT 59.105 40.909 0.00 0.00 42.33 2.83
3318 3340 3.322828 AGCTTTGGTGCTGATCATGTTTT 59.677 39.130 0.00 0.00 42.33 2.43
3319 3341 3.430895 GCTTTGGTGCTGATCATGTTTTG 59.569 43.478 0.00 0.00 0.00 2.44
3320 3342 2.728690 TGGTGCTGATCATGTTTTGC 57.271 45.000 0.00 0.00 0.00 3.68
3321 3343 1.273048 TGGTGCTGATCATGTTTTGCC 59.727 47.619 0.00 0.00 0.00 4.52
3322 3344 1.404583 GGTGCTGATCATGTTTTGCCC 60.405 52.381 0.00 0.00 0.00 5.36
3323 3345 0.527113 TGCTGATCATGTTTTGCCCG 59.473 50.000 0.00 0.00 0.00 6.13
3324 3346 0.527565 GCTGATCATGTTTTGCCCGT 59.472 50.000 0.00 0.00 0.00 5.28
3325 3347 1.733389 GCTGATCATGTTTTGCCCGTG 60.733 52.381 0.00 0.00 0.00 4.94
3326 3348 0.887247 TGATCATGTTTTGCCCGTGG 59.113 50.000 0.00 0.00 0.00 4.94
3327 3349 1.173043 GATCATGTTTTGCCCGTGGA 58.827 50.000 0.00 0.00 0.00 4.02
3328 3350 1.543802 GATCATGTTTTGCCCGTGGAA 59.456 47.619 0.00 0.00 0.00 3.53
3329 3351 0.958091 TCATGTTTTGCCCGTGGAAG 59.042 50.000 0.00 0.00 0.00 3.46
3330 3352 0.958091 CATGTTTTGCCCGTGGAAGA 59.042 50.000 0.00 0.00 0.00 2.87
3331 3353 1.068333 CATGTTTTGCCCGTGGAAGAG 60.068 52.381 0.00 0.00 0.00 2.85
3332 3354 0.821711 TGTTTTGCCCGTGGAAGAGG 60.822 55.000 0.00 0.00 0.00 3.69
3336 3358 2.987125 GCCCGTGGAAGAGGCTTA 59.013 61.111 0.00 0.00 43.62 3.09
3337 3359 1.153349 GCCCGTGGAAGAGGCTTAG 60.153 63.158 0.00 0.00 43.62 2.18
3338 3360 1.900545 GCCCGTGGAAGAGGCTTAGT 61.901 60.000 0.00 0.00 43.62 2.24
3339 3361 0.175989 CCCGTGGAAGAGGCTTAGTC 59.824 60.000 0.00 0.00 0.00 2.59
3340 3362 0.895530 CCGTGGAAGAGGCTTAGTCA 59.104 55.000 0.00 0.00 0.00 3.41
3341 3363 1.275291 CCGTGGAAGAGGCTTAGTCAA 59.725 52.381 0.00 0.00 0.00 3.18
3342 3364 2.338500 CGTGGAAGAGGCTTAGTCAAC 58.662 52.381 0.00 0.00 0.00 3.18
3343 3365 2.338500 GTGGAAGAGGCTTAGTCAACG 58.662 52.381 0.00 0.00 0.00 4.10
3344 3366 1.275291 TGGAAGAGGCTTAGTCAACGG 59.725 52.381 0.00 0.00 0.00 4.44
3345 3367 1.405661 GGAAGAGGCTTAGTCAACGGG 60.406 57.143 0.00 0.00 0.00 5.28
3346 3368 1.275573 GAAGAGGCTTAGTCAACGGGT 59.724 52.381 0.00 0.00 0.00 5.28
3347 3369 0.896226 AGAGGCTTAGTCAACGGGTC 59.104 55.000 0.00 0.00 0.00 4.46
3348 3370 0.896226 GAGGCTTAGTCAACGGGTCT 59.104 55.000 0.00 0.00 0.00 3.85
3349 3371 0.608640 AGGCTTAGTCAACGGGTCTG 59.391 55.000 0.00 0.00 0.00 3.51
3350 3372 1.019805 GGCTTAGTCAACGGGTCTGC 61.020 60.000 0.00 0.00 0.00 4.26
3351 3373 0.037232 GCTTAGTCAACGGGTCTGCT 60.037 55.000 0.00 0.00 0.00 4.24
3352 3374 1.203994 GCTTAGTCAACGGGTCTGCTA 59.796 52.381 0.00 0.00 0.00 3.49
3353 3375 2.877335 CTTAGTCAACGGGTCTGCTAC 58.123 52.381 0.00 0.00 0.00 3.58
3354 3376 1.913778 TAGTCAACGGGTCTGCTACA 58.086 50.000 0.00 0.00 0.00 2.74
3355 3377 1.267121 AGTCAACGGGTCTGCTACAT 58.733 50.000 0.00 0.00 0.00 2.29
3356 3378 1.623811 AGTCAACGGGTCTGCTACATT 59.376 47.619 0.00 0.00 0.00 2.71
3357 3379 2.000447 GTCAACGGGTCTGCTACATTC 59.000 52.381 0.00 0.00 0.00 2.67
3358 3380 1.621317 TCAACGGGTCTGCTACATTCA 59.379 47.619 0.00 0.00 0.00 2.57
3359 3381 2.002586 CAACGGGTCTGCTACATTCAG 58.997 52.381 0.00 0.00 0.00 3.02
3360 3382 0.108138 ACGGGTCTGCTACATTCAGC 60.108 55.000 0.00 0.00 42.15 4.26
3361 3383 0.176680 CGGGTCTGCTACATTCAGCT 59.823 55.000 0.00 0.00 42.30 4.24
3362 3384 1.804372 CGGGTCTGCTACATTCAGCTC 60.804 57.143 0.00 0.00 42.30 4.09
3363 3385 1.474143 GGGTCTGCTACATTCAGCTCC 60.474 57.143 0.00 0.00 42.30 4.70
3364 3386 1.208052 GGTCTGCTACATTCAGCTCCA 59.792 52.381 0.00 0.00 42.30 3.86
3365 3387 2.158842 GGTCTGCTACATTCAGCTCCAT 60.159 50.000 0.00 0.00 42.30 3.41
3366 3388 3.070159 GGTCTGCTACATTCAGCTCCATA 59.930 47.826 0.00 0.00 42.30 2.74
3367 3389 4.262808 GGTCTGCTACATTCAGCTCCATAT 60.263 45.833 0.00 0.00 42.30 1.78
3368 3390 4.689812 GTCTGCTACATTCAGCTCCATATG 59.310 45.833 0.00 0.00 42.30 1.78
3369 3391 4.346127 TCTGCTACATTCAGCTCCATATGT 59.654 41.667 1.24 0.00 42.30 2.29
3370 3392 5.539955 TCTGCTACATTCAGCTCCATATGTA 59.460 40.000 1.24 0.00 42.30 2.29
3371 3393 6.212187 TCTGCTACATTCAGCTCCATATGTAT 59.788 38.462 1.24 0.00 42.30 2.29
3372 3394 6.401394 TGCTACATTCAGCTCCATATGTATC 58.599 40.000 1.24 0.00 42.30 2.24
3373 3395 6.212187 TGCTACATTCAGCTCCATATGTATCT 59.788 38.462 1.24 0.00 42.30 1.98
3374 3396 7.102346 GCTACATTCAGCTCCATATGTATCTT 58.898 38.462 1.24 0.00 38.57 2.40
3375 3397 8.253810 GCTACATTCAGCTCCATATGTATCTTA 58.746 37.037 1.24 0.00 38.57 2.10
3376 3398 9.579768 CTACATTCAGCTCCATATGTATCTTAC 57.420 37.037 1.24 0.00 34.15 2.34
3377 3399 7.966812 ACATTCAGCTCCATATGTATCTTACA 58.033 34.615 1.24 0.00 43.80 2.41
3378 3400 8.432013 ACATTCAGCTCCATATGTATCTTACAA 58.568 33.333 1.24 0.00 42.76 2.41
3379 3401 9.276590 CATTCAGCTCCATATGTATCTTACAAA 57.723 33.333 1.24 0.00 42.76 2.83
3381 3403 9.494271 TTCAGCTCCATATGTATCTTACAAATC 57.506 33.333 1.24 0.00 42.76 2.17
3382 3404 8.874156 TCAGCTCCATATGTATCTTACAAATCT 58.126 33.333 1.24 0.00 42.76 2.40
3383 3405 9.149225 CAGCTCCATATGTATCTTACAAATCTC 57.851 37.037 1.24 0.00 42.76 2.75
3384 3406 9.099071 AGCTCCATATGTATCTTACAAATCTCT 57.901 33.333 1.24 0.00 42.76 3.10
3393 3415 8.861086 TGTATCTTACAAATCTCTATGTCTCCC 58.139 37.037 0.00 0.00 35.38 4.30
3394 3416 7.921041 ATCTTACAAATCTCTATGTCTCCCA 57.079 36.000 0.00 0.00 0.00 4.37
3395 3417 7.113658 TCTTACAAATCTCTATGTCTCCCAC 57.886 40.000 0.00 0.00 0.00 4.61
3396 3418 4.762289 ACAAATCTCTATGTCTCCCACC 57.238 45.455 0.00 0.00 0.00 4.61
3397 3419 4.366267 ACAAATCTCTATGTCTCCCACCT 58.634 43.478 0.00 0.00 0.00 4.00
3398 3420 4.163078 ACAAATCTCTATGTCTCCCACCTG 59.837 45.833 0.00 0.00 0.00 4.00
3399 3421 2.461300 TCTCTATGTCTCCCACCTGG 57.539 55.000 0.00 0.00 0.00 4.45
3400 3422 1.930204 TCTCTATGTCTCCCACCTGGA 59.070 52.381 0.00 0.00 42.41 3.86
3401 3423 2.035632 CTCTATGTCTCCCACCTGGAC 58.964 57.143 0.00 0.00 38.61 4.02
3402 3424 1.646447 TCTATGTCTCCCACCTGGACT 59.354 52.381 0.00 0.00 38.61 3.85
3403 3425 2.856864 TCTATGTCTCCCACCTGGACTA 59.143 50.000 0.00 0.00 38.61 2.59
3404 3426 2.166907 ATGTCTCCCACCTGGACTAG 57.833 55.000 0.00 0.00 38.61 2.57
3405 3427 1.081481 TGTCTCCCACCTGGACTAGA 58.919 55.000 0.00 0.00 38.61 2.43
3406 3428 1.646447 TGTCTCCCACCTGGACTAGAT 59.354 52.381 0.00 0.00 38.61 1.98
3407 3429 2.312390 GTCTCCCACCTGGACTAGATC 58.688 57.143 0.00 0.00 38.61 2.75
3424 3446 3.494850 TCCCGGATGGAATTGAAGC 57.505 52.632 0.73 0.00 41.40 3.86
3425 3447 0.463654 TCCCGGATGGAATTGAAGCG 60.464 55.000 0.73 0.00 41.40 4.68
3426 3448 0.748005 CCCGGATGGAATTGAAGCGT 60.748 55.000 0.73 0.00 37.49 5.07
3427 3449 0.657840 CCGGATGGAATTGAAGCGTC 59.342 55.000 0.00 0.00 37.49 5.19
3428 3450 1.656652 CGGATGGAATTGAAGCGTCT 58.343 50.000 0.31 0.00 0.00 4.18
3429 3451 2.009774 CGGATGGAATTGAAGCGTCTT 58.990 47.619 0.31 0.00 0.00 3.01
3430 3452 2.420022 CGGATGGAATTGAAGCGTCTTT 59.580 45.455 0.31 0.00 0.00 2.52
3431 3453 3.119849 CGGATGGAATTGAAGCGTCTTTT 60.120 43.478 0.31 0.00 0.00 2.27
3432 3454 4.168760 GGATGGAATTGAAGCGTCTTTTG 58.831 43.478 0.31 0.00 0.00 2.44
3433 3455 4.082787 GGATGGAATTGAAGCGTCTTTTGA 60.083 41.667 0.31 0.00 0.00 2.69
3434 3456 5.393461 GGATGGAATTGAAGCGTCTTTTGAT 60.393 40.000 0.31 0.00 0.00 2.57
3435 3457 4.797471 TGGAATTGAAGCGTCTTTTGATG 58.203 39.130 0.31 0.00 38.45 3.07
3436 3458 4.278170 TGGAATTGAAGCGTCTTTTGATGT 59.722 37.500 0.31 0.00 37.74 3.06
3437 3459 4.618489 GGAATTGAAGCGTCTTTTGATGTG 59.382 41.667 0.31 0.00 37.74 3.21
3438 3460 2.686558 TGAAGCGTCTTTTGATGTGC 57.313 45.000 0.31 0.00 37.74 4.57
3439 3461 2.221169 TGAAGCGTCTTTTGATGTGCT 58.779 42.857 0.31 0.00 37.74 4.40
3440 3462 2.618241 TGAAGCGTCTTTTGATGTGCTT 59.382 40.909 0.31 0.00 42.58 3.91
3441 3463 2.693797 AGCGTCTTTTGATGTGCTTG 57.306 45.000 0.00 0.00 37.74 4.01
3442 3464 1.267806 AGCGTCTTTTGATGTGCTTGG 59.732 47.619 0.00 0.00 37.74 3.61
3443 3465 1.001378 GCGTCTTTTGATGTGCTTGGT 60.001 47.619 0.00 0.00 37.74 3.67
3444 3466 2.543653 GCGTCTTTTGATGTGCTTGGTT 60.544 45.455 0.00 0.00 37.74 3.67
3445 3467 3.300009 CGTCTTTTGATGTGCTTGGTTC 58.700 45.455 0.00 0.00 0.00 3.62
3446 3468 3.003689 CGTCTTTTGATGTGCTTGGTTCT 59.996 43.478 0.00 0.00 0.00 3.01
3447 3469 4.498009 CGTCTTTTGATGTGCTTGGTTCTT 60.498 41.667 0.00 0.00 0.00 2.52
3448 3470 5.351458 GTCTTTTGATGTGCTTGGTTCTTT 58.649 37.500 0.00 0.00 0.00 2.52
3449 3471 5.812127 GTCTTTTGATGTGCTTGGTTCTTTT 59.188 36.000 0.00 0.00 0.00 2.27
3450 3472 5.811613 TCTTTTGATGTGCTTGGTTCTTTTG 59.188 36.000 0.00 0.00 0.00 2.44
3451 3473 4.734398 TTGATGTGCTTGGTTCTTTTGT 57.266 36.364 0.00 0.00 0.00 2.83
3452 3474 4.044336 TGATGTGCTTGGTTCTTTTGTG 57.956 40.909 0.00 0.00 0.00 3.33
3453 3475 3.698539 TGATGTGCTTGGTTCTTTTGTGA 59.301 39.130 0.00 0.00 0.00 3.58
3454 3476 4.159321 TGATGTGCTTGGTTCTTTTGTGAA 59.841 37.500 0.00 0.00 0.00 3.18
3455 3477 4.527509 TGTGCTTGGTTCTTTTGTGAAA 57.472 36.364 0.00 0.00 0.00 2.69
3456 3478 4.241681 TGTGCTTGGTTCTTTTGTGAAAC 58.758 39.130 0.00 0.00 34.47 2.78
3457 3479 3.616821 GTGCTTGGTTCTTTTGTGAAACC 59.383 43.478 0.00 0.00 33.02 3.27
3458 3480 3.513515 TGCTTGGTTCTTTTGTGAAACCT 59.486 39.130 5.23 0.00 33.02 3.50
3459 3481 3.865164 GCTTGGTTCTTTTGTGAAACCTG 59.135 43.478 5.23 0.47 33.02 4.00
3460 3482 4.432712 CTTGGTTCTTTTGTGAAACCTGG 58.567 43.478 5.23 0.00 33.02 4.45
3461 3483 3.702792 TGGTTCTTTTGTGAAACCTGGA 58.297 40.909 0.00 0.00 33.02 3.86
3462 3484 4.285863 TGGTTCTTTTGTGAAACCTGGAT 58.714 39.130 0.00 0.00 33.02 3.41
3463 3485 4.714308 TGGTTCTTTTGTGAAACCTGGATT 59.286 37.500 0.00 0.00 33.02 3.01
3464 3486 5.163457 TGGTTCTTTTGTGAAACCTGGATTC 60.163 40.000 9.55 9.55 33.02 2.52
3465 3487 5.289595 GTTCTTTTGTGAAACCTGGATTCC 58.710 41.667 13.36 6.31 34.36 3.01
3466 3488 4.803452 TCTTTTGTGAAACCTGGATTCCT 58.197 39.130 13.36 0.00 34.36 3.36
3467 3489 5.208121 TCTTTTGTGAAACCTGGATTCCTT 58.792 37.500 13.36 0.00 34.36 3.36
3468 3490 5.660864 TCTTTTGTGAAACCTGGATTCCTTT 59.339 36.000 13.36 0.00 34.36 3.11
3469 3491 4.935352 TTGTGAAACCTGGATTCCTTTG 57.065 40.909 13.36 0.00 34.36 2.77
3470 3492 2.627699 TGTGAAACCTGGATTCCTTTGC 59.372 45.455 13.36 1.29 34.36 3.68
3471 3493 2.029020 GTGAAACCTGGATTCCTTTGCC 60.029 50.000 13.36 0.00 0.00 4.52
3472 3494 2.247358 GAAACCTGGATTCCTTTGCCA 58.753 47.619 0.00 0.00 0.00 4.92
3473 3495 2.397044 AACCTGGATTCCTTTGCCAA 57.603 45.000 0.00 0.00 0.00 4.52
3474 3496 1.928868 ACCTGGATTCCTTTGCCAAG 58.071 50.000 0.00 0.00 0.00 3.61
3486 3508 2.742403 GCCAAGGCAATTGCACCA 59.258 55.556 30.32 0.00 44.36 4.17
3487 3509 1.375013 GCCAAGGCAATTGCACCAG 60.375 57.895 30.32 17.17 44.36 4.00
3488 3510 2.051941 CCAAGGCAATTGCACCAGT 58.948 52.632 30.32 8.56 44.36 4.00
3489 3511 1.255882 CCAAGGCAATTGCACCAGTA 58.744 50.000 30.32 0.00 44.36 2.74
3490 3512 1.826720 CCAAGGCAATTGCACCAGTAT 59.173 47.619 30.32 6.40 44.36 2.12
3491 3513 2.234414 CCAAGGCAATTGCACCAGTATT 59.766 45.455 30.32 10.79 44.36 1.89
3492 3514 3.255725 CAAGGCAATTGCACCAGTATTG 58.744 45.455 30.32 17.44 44.36 1.90
3493 3515 2.528564 AGGCAATTGCACCAGTATTGT 58.471 42.857 30.32 0.73 44.36 2.71
3494 3516 2.493278 AGGCAATTGCACCAGTATTGTC 59.507 45.455 30.32 9.51 44.36 3.18
3495 3517 2.230992 GGCAATTGCACCAGTATTGTCA 59.769 45.455 30.32 0.00 44.36 3.58
3496 3518 3.244976 GCAATTGCACCAGTATTGTCAC 58.755 45.455 25.36 0.00 41.59 3.67
3497 3519 3.305267 GCAATTGCACCAGTATTGTCACA 60.305 43.478 25.36 0.00 41.59 3.58
3498 3520 4.795635 GCAATTGCACCAGTATTGTCACAA 60.796 41.667 25.36 0.00 41.59 3.33
3499 3521 5.288015 CAATTGCACCAGTATTGTCACAAA 58.712 37.500 0.00 0.00 0.00 2.83
3500 3522 4.991153 TTGCACCAGTATTGTCACAAAA 57.009 36.364 0.00 0.00 0.00 2.44
3501 3523 4.566545 TGCACCAGTATTGTCACAAAAG 57.433 40.909 0.00 0.00 0.00 2.27
3502 3524 4.203226 TGCACCAGTATTGTCACAAAAGA 58.797 39.130 0.00 0.00 0.00 2.52
3503 3525 4.826733 TGCACCAGTATTGTCACAAAAGAT 59.173 37.500 0.00 0.00 0.00 2.40
3504 3526 5.301551 TGCACCAGTATTGTCACAAAAGATT 59.698 36.000 0.00 0.00 0.00 2.40
3505 3527 6.183360 TGCACCAGTATTGTCACAAAAGATTT 60.183 34.615 0.00 0.00 0.00 2.17
3506 3528 6.701400 GCACCAGTATTGTCACAAAAGATTTT 59.299 34.615 0.00 0.00 0.00 1.82
3507 3529 7.096065 GCACCAGTATTGTCACAAAAGATTTTC 60.096 37.037 0.00 0.00 0.00 2.29
3508 3530 7.920151 CACCAGTATTGTCACAAAAGATTTTCA 59.080 33.333 0.00 0.00 0.00 2.69
3509 3531 8.641541 ACCAGTATTGTCACAAAAGATTTTCAT 58.358 29.630 0.00 0.00 0.00 2.57
3510 3532 9.480053 CCAGTATTGTCACAAAAGATTTTCATT 57.520 29.630 0.00 0.00 0.00 2.57
3512 3534 9.480053 AGTATTGTCACAAAAGATTTTCATTGG 57.520 29.630 0.00 0.00 0.00 3.16
3513 3535 9.474920 GTATTGTCACAAAAGATTTTCATTGGA 57.525 29.630 0.00 0.00 0.00 3.53
3514 3536 7.769272 TTGTCACAAAAGATTTTCATTGGAC 57.231 32.000 0.00 0.00 0.00 4.02
3515 3537 6.279882 TGTCACAAAAGATTTTCATTGGACC 58.720 36.000 0.00 0.00 0.00 4.46
3516 3538 5.696270 GTCACAAAAGATTTTCATTGGACCC 59.304 40.000 0.00 0.00 0.00 4.46
3517 3539 4.685628 CACAAAAGATTTTCATTGGACCCG 59.314 41.667 0.00 0.00 0.00 5.28
3518 3540 4.586841 ACAAAAGATTTTCATTGGACCCGA 59.413 37.500 0.00 0.00 0.00 5.14
3519 3541 5.245977 ACAAAAGATTTTCATTGGACCCGAT 59.754 36.000 0.00 0.00 0.00 4.18
3520 3542 4.989279 AAGATTTTCATTGGACCCGATG 57.011 40.909 9.53 9.53 38.77 3.84
3521 3543 2.689983 AGATTTTCATTGGACCCGATGC 59.310 45.455 10.74 0.00 37.65 3.91
3522 3544 1.916506 TTTTCATTGGACCCGATGCA 58.083 45.000 10.74 0.00 37.65 3.96
3523 3545 1.173043 TTTCATTGGACCCGATGCAC 58.827 50.000 10.74 0.00 37.65 4.57
3524 3546 0.327924 TTCATTGGACCCGATGCACT 59.672 50.000 10.74 0.00 37.65 4.40
3525 3547 1.199615 TCATTGGACCCGATGCACTA 58.800 50.000 10.74 0.00 37.65 2.74
3526 3548 1.138859 TCATTGGACCCGATGCACTAG 59.861 52.381 10.74 0.00 37.65 2.57
3527 3549 0.469917 ATTGGACCCGATGCACTAGG 59.530 55.000 0.00 0.00 0.00 3.02
3528 3550 0.907704 TTGGACCCGATGCACTAGGT 60.908 55.000 3.13 3.13 34.57 3.08
3529 3551 0.032912 TGGACCCGATGCACTAGGTA 60.033 55.000 3.48 0.00 31.10 3.08
3530 3552 1.339097 GGACCCGATGCACTAGGTAT 58.661 55.000 3.48 0.00 31.10 2.73
3531 3553 1.000955 GGACCCGATGCACTAGGTATG 59.999 57.143 3.48 0.00 31.10 2.39
3532 3554 1.961394 GACCCGATGCACTAGGTATGA 59.039 52.381 3.48 0.00 31.10 2.15
3533 3555 1.687123 ACCCGATGCACTAGGTATGAC 59.313 52.381 1.62 0.00 0.00 3.06
3534 3556 1.686587 CCCGATGCACTAGGTATGACA 59.313 52.381 0.00 0.00 0.00 3.58
3535 3557 2.545952 CCCGATGCACTAGGTATGACAC 60.546 54.545 0.00 0.00 0.00 3.67
3549 3571 6.137794 GGTATGACACCTAGATCGGATATG 57.862 45.833 0.00 0.00 44.79 1.78
3550 3572 5.886474 GGTATGACACCTAGATCGGATATGA 59.114 44.000 0.00 0.00 44.79 2.15
3551 3573 6.377429 GGTATGACACCTAGATCGGATATGAA 59.623 42.308 0.00 0.00 44.79 2.57
3552 3574 5.707242 TGACACCTAGATCGGATATGAAC 57.293 43.478 0.00 0.00 0.00 3.18
3553 3575 5.386060 TGACACCTAGATCGGATATGAACT 58.614 41.667 0.00 0.00 0.00 3.01
3554 3576 5.473846 TGACACCTAGATCGGATATGAACTC 59.526 44.000 0.00 0.00 0.00 3.01
3555 3577 4.767928 ACACCTAGATCGGATATGAACTCC 59.232 45.833 0.00 0.00 0.00 3.85
3556 3578 5.013547 CACCTAGATCGGATATGAACTCCT 58.986 45.833 0.00 0.00 0.00 3.69
3557 3579 5.478679 CACCTAGATCGGATATGAACTCCTT 59.521 44.000 0.00 0.00 0.00 3.36
3558 3580 5.712917 ACCTAGATCGGATATGAACTCCTTC 59.287 44.000 0.00 0.00 0.00 3.46
3559 3581 5.712446 CCTAGATCGGATATGAACTCCTTCA 59.288 44.000 0.00 0.00 40.77 3.02
3560 3582 6.379703 CCTAGATCGGATATGAACTCCTTCAT 59.620 42.308 0.00 1.78 46.84 2.57
3561 3583 6.279513 AGATCGGATATGAACTCCTTCATC 57.720 41.667 0.00 0.00 42.54 2.92
3562 3584 4.873746 TCGGATATGAACTCCTTCATCC 57.126 45.455 0.00 0.00 42.54 3.51
3563 3585 4.223144 TCGGATATGAACTCCTTCATCCA 58.777 43.478 0.00 0.00 42.54 3.41
3564 3586 4.281941 TCGGATATGAACTCCTTCATCCAG 59.718 45.833 0.00 0.00 42.54 3.86
3565 3587 4.281941 CGGATATGAACTCCTTCATCCAGA 59.718 45.833 0.00 0.00 42.54 3.86
3566 3588 5.546526 GGATATGAACTCCTTCATCCAGAC 58.453 45.833 0.00 0.00 42.54 3.51
3567 3589 5.306678 GGATATGAACTCCTTCATCCAGACT 59.693 44.000 0.00 0.00 42.54 3.24
3568 3590 4.751767 ATGAACTCCTTCATCCAGACTC 57.248 45.455 0.00 0.00 42.54 3.36
3569 3591 2.834549 TGAACTCCTTCATCCAGACTCC 59.165 50.000 0.00 0.00 31.00 3.85
3570 3592 2.938428 ACTCCTTCATCCAGACTCCT 57.062 50.000 0.00 0.00 0.00 3.69
3571 3593 3.197927 ACTCCTTCATCCAGACTCCTT 57.802 47.619 0.00 0.00 0.00 3.36
3572 3594 3.103742 ACTCCTTCATCCAGACTCCTTC 58.896 50.000 0.00 0.00 0.00 3.46
3573 3595 2.100584 CTCCTTCATCCAGACTCCTTCG 59.899 54.545 0.00 0.00 0.00 3.79
3574 3596 1.827969 CCTTCATCCAGACTCCTTCGT 59.172 52.381 0.00 0.00 0.00 3.85
3575 3597 2.234908 CCTTCATCCAGACTCCTTCGTT 59.765 50.000 0.00 0.00 0.00 3.85
3576 3598 3.307059 CCTTCATCCAGACTCCTTCGTTT 60.307 47.826 0.00 0.00 0.00 3.60
3577 3599 3.319137 TCATCCAGACTCCTTCGTTTG 57.681 47.619 0.00 0.00 0.00 2.93
3578 3600 1.734465 CATCCAGACTCCTTCGTTTGC 59.266 52.381 0.00 0.00 0.00 3.68
3579 3601 1.048601 TCCAGACTCCTTCGTTTGCT 58.951 50.000 0.00 0.00 0.00 3.91
3580 3602 1.151668 CCAGACTCCTTCGTTTGCTG 58.848 55.000 0.00 0.00 0.00 4.41
3581 3603 0.514691 CAGACTCCTTCGTTTGCTGC 59.485 55.000 0.00 0.00 0.00 5.25
3582 3604 0.394565 AGACTCCTTCGTTTGCTGCT 59.605 50.000 0.00 0.00 0.00 4.24
3583 3605 1.202698 AGACTCCTTCGTTTGCTGCTT 60.203 47.619 0.00 0.00 0.00 3.91
3584 3606 1.195674 GACTCCTTCGTTTGCTGCTTC 59.804 52.381 0.00 0.00 0.00 3.86
3585 3607 0.519077 CTCCTTCGTTTGCTGCTTCC 59.481 55.000 0.00 0.00 0.00 3.46
3586 3608 1.207593 CCTTCGTTTGCTGCTTCCG 59.792 57.895 0.00 0.01 0.00 4.30
3587 3609 1.227999 CCTTCGTTTGCTGCTTCCGA 61.228 55.000 0.00 2.61 0.00 4.55
3588 3610 0.586319 CTTCGTTTGCTGCTTCCGAA 59.414 50.000 15.76 15.76 36.29 4.30
3589 3611 0.586319 TTCGTTTGCTGCTTCCGAAG 59.414 50.000 13.71 3.56 33.13 3.79
3601 3623 3.444703 CTTCCGAAGCAGCTATGTACT 57.555 47.619 0.00 0.00 0.00 2.73
3602 3624 3.376540 CTTCCGAAGCAGCTATGTACTC 58.623 50.000 0.00 0.00 0.00 2.59
3603 3625 1.681793 TCCGAAGCAGCTATGTACTCC 59.318 52.381 0.00 0.00 0.00 3.85
3604 3626 1.600663 CCGAAGCAGCTATGTACTCCG 60.601 57.143 0.00 0.00 0.00 4.63
3605 3627 1.492720 GAAGCAGCTATGTACTCCGC 58.507 55.000 0.00 0.00 0.00 5.54
3606 3628 1.067821 GAAGCAGCTATGTACTCCGCT 59.932 52.381 0.00 0.00 0.00 5.52
3607 3629 1.115467 AGCAGCTATGTACTCCGCTT 58.885 50.000 0.00 0.00 0.00 4.68
3608 3630 1.067821 AGCAGCTATGTACTCCGCTTC 59.932 52.381 0.00 0.00 0.00 3.86
3609 3631 1.202417 GCAGCTATGTACTCCGCTTCA 60.202 52.381 0.00 0.00 0.00 3.02
3610 3632 2.464865 CAGCTATGTACTCCGCTTCAC 58.535 52.381 0.00 0.00 0.00 3.18
3611 3633 2.100197 AGCTATGTACTCCGCTTCACA 58.900 47.619 0.00 0.00 0.00 3.58
3612 3634 2.695666 AGCTATGTACTCCGCTTCACAT 59.304 45.455 0.00 0.00 35.81 3.21
3613 3635 2.797156 GCTATGTACTCCGCTTCACATG 59.203 50.000 0.00 0.00 33.78 3.21
3614 3636 3.738281 GCTATGTACTCCGCTTCACATGT 60.738 47.826 0.00 0.00 33.78 3.21
3615 3637 4.499188 GCTATGTACTCCGCTTCACATGTA 60.499 45.833 0.00 0.00 33.78 2.29
3616 3638 3.503827 TGTACTCCGCTTCACATGTAG 57.496 47.619 0.00 0.00 0.00 2.74
3617 3639 3.086282 TGTACTCCGCTTCACATGTAGA 58.914 45.455 0.00 0.00 0.00 2.59
3618 3640 3.699538 TGTACTCCGCTTCACATGTAGAT 59.300 43.478 0.00 0.00 0.00 1.98
3619 3641 3.444703 ACTCCGCTTCACATGTAGATC 57.555 47.619 0.00 0.00 0.00 2.75
3643 3665 2.880890 GCCACGAGCCTCAATATTCATT 59.119 45.455 0.00 0.00 34.35 2.57
3659 3681 9.506018 CAATATTCATTGGACCACATACATCTA 57.494 33.333 0.00 0.00 38.31 1.98
3724 10747 4.487948 CGGAGAACGGTGTTTTAGTCATA 58.512 43.478 0.00 0.00 39.42 2.15
3748 10771 2.108514 CATGAGGCACGGTTCGCAT 61.109 57.895 0.00 0.00 0.00 4.73
3886 10909 2.867624 TCAACTCTGCATCTTTTGGCT 58.132 42.857 0.00 0.00 0.00 4.75
3907 10930 8.744568 TGGCTTCAACATTATGAATATGTGTA 57.255 30.769 0.00 0.00 38.55 2.90
4037 11061 3.034721 ACCGTCTCGCATTAAACAAGA 57.965 42.857 0.00 0.00 0.00 3.02
4040 11064 3.001330 CCGTCTCGCATTAAACAAGATCC 59.999 47.826 0.00 0.00 0.00 3.36
4124 11148 5.692928 TCCTGAAGGTAGATGTAGAGGTAC 58.307 45.833 0.00 0.00 36.34 3.34
4208 11232 2.213499 AGCCAATCTTCGCTTAATCCG 58.787 47.619 0.00 0.00 28.56 4.18
4264 11288 5.126067 CAGAACCAGTATCAAATACCCAGG 58.874 45.833 0.00 0.00 36.40 4.45
4272 11296 6.041637 CAGTATCAAATACCCAGGTGCTACTA 59.958 42.308 0.00 0.00 36.40 1.82
4382 11406 0.034059 CAGTTCCGCTTCCAGTGACT 59.966 55.000 0.00 0.00 0.00 3.41
4390 11414 1.404851 GCTTCCAGTGACTAGTCTGCC 60.405 57.143 23.01 11.25 0.00 4.85
4406 11430 0.397941 TGCCTGCAGTAGAAGCACTT 59.602 50.000 13.81 0.00 37.02 3.16
4438 11462 0.771755 AGGTCCAGACTTGGGTTTCC 59.228 55.000 0.00 0.00 45.10 3.13
4447 11471 3.716872 AGACTTGGGTTTCCTCTCTTGAA 59.283 43.478 0.00 0.00 0.00 2.69
4559 11583 6.218746 ACACTTGATGCTCCTTTTTGATTTC 58.781 36.000 0.00 0.00 0.00 2.17
4568 11592 4.007659 TCCTTTTTGATTTCTACCTCCGC 58.992 43.478 0.00 0.00 0.00 5.54
4634 11658 9.404848 CATCCCTTGCATATTATAGTTCATCAT 57.595 33.333 0.00 0.00 0.00 2.45
4674 11698 4.517285 GTGGCAGTGATTGGAGAATTCTA 58.483 43.478 8.25 0.00 0.00 2.10
4737 11761 9.778741 TGAATCAAGTGATTATTATACCCAGAC 57.221 33.333 6.52 0.00 44.14 3.51
4760 11784 7.493971 AGACATTTTGAGTATATGCTCACTGAC 59.506 37.037 21.46 17.44 44.23 3.51
4767 11791 5.900425 AGTATATGCTCACTGACAGAACTG 58.100 41.667 10.08 0.00 0.00 3.16
4782 11806 4.252073 CAGAACTGTTCTCCTCCATCTTG 58.748 47.826 19.65 2.76 38.11 3.02
4783 11807 2.777832 ACTGTTCTCCTCCATCTTGC 57.222 50.000 0.00 0.00 0.00 4.01
4805 11829 6.516718 TGCAGCTATAGAACTTATTGGAGAC 58.483 40.000 3.21 0.00 0.00 3.36
4823 11847 7.666063 TGGAGACTTCATATCTCTCAATTCA 57.334 36.000 2.30 0.00 42.02 2.57
4831 11855 7.506328 TCATATCTCTCAATTCAGGCATTTG 57.494 36.000 0.00 0.00 0.00 2.32
4854 11878 9.691362 TTTGCTTGAAATATTAACTTCAACTCC 57.309 29.630 5.52 0.87 36.79 3.85
4879 11903 5.013808 TGGAACATCTCATATGCTCCATGAT 59.986 40.000 6.11 0.00 38.82 2.45
5027 12051 2.270205 CAGCGGTGCTTCCAGGAT 59.730 61.111 0.00 0.00 36.40 3.24
5132 12156 4.794169 GCTTTCTCAAGGAACGCATTAAA 58.206 39.130 0.00 0.00 45.03 1.52
5147 12171 5.923684 ACGCATTAAAATTCAACGGAACAAT 59.076 32.000 0.00 0.00 35.46 2.71
5281 12305 8.461033 ACTTAGATAGACATCCCTCTAATCCTT 58.539 37.037 0.00 0.00 31.69 3.36
5416 12440 1.861971 ACCTTTCGGTCTTCGTGTTC 58.138 50.000 0.00 0.00 40.27 3.18
5459 12483 4.504858 CTTGGCTCGTCAAGTATAACCTT 58.495 43.478 3.19 0.00 39.27 3.50
5468 12492 8.523915 TCGTCAAGTATAACCTTAGTATTCCA 57.476 34.615 0.00 0.00 0.00 3.53
5537 12561 1.218047 CCCGATCATCACGTGGTGT 59.782 57.895 27.10 15.24 34.79 4.16
5556 12580 3.060205 GTGTCTCAGCACGAAGAACTTTC 60.060 47.826 0.00 0.00 0.00 2.62
5590 12614 3.309296 ACTCAGGGAGAACACTTCTTGA 58.691 45.455 0.00 0.00 40.87 3.02
5630 12654 8.367911 AGATCATCTTATAATGCTACCGTCAAA 58.632 33.333 0.00 0.00 0.00 2.69
5724 12748 1.351076 TCTTGTGCCTGTGATCTCCA 58.649 50.000 0.00 0.00 0.00 3.86
5728 12752 1.483827 TGTGCCTGTGATCTCCATCTC 59.516 52.381 0.00 0.00 0.00 2.75
5738 12762 1.227089 CTCCATCTCCGAAGCACCG 60.227 63.158 0.00 0.00 0.00 4.94
5791 12815 2.230660 TGATCTCCATCGTAGCATCGT 58.769 47.619 0.00 0.00 0.00 3.73
5796 12820 1.474879 TCCATCGTAGCATCGTTGTCA 59.525 47.619 9.49 0.00 0.00 3.58
5832 12856 1.334243 GCTTCCACGACTATCGCTACT 59.666 52.381 0.00 0.00 45.12 2.57
5852 12876 7.701078 CGCTACTGCTTAGTGATAAAGTAAAGA 59.299 37.037 1.44 0.00 40.32 2.52
5853 12877 9.535878 GCTACTGCTTAGTGATAAAGTAAAGAT 57.464 33.333 0.00 0.00 36.03 2.40
5862 12886 7.685594 AGTGATAAAGTAAAGATTTACAGCGC 58.314 34.615 15.75 0.00 44.14 5.92
6032 13056 4.369182 AGACGTCCTCTACTTTGTTGTTG 58.631 43.478 13.01 0.00 0.00 3.33
6033 13057 2.870411 ACGTCCTCTACTTTGTTGTTGC 59.130 45.455 0.00 0.00 0.00 4.17
6210 13234 1.888512 CAAGCCACCTATGTGCAAAGT 59.111 47.619 0.00 0.00 41.35 2.66
6215 13239 2.671396 CCACCTATGTGCAAAGTACGTC 59.329 50.000 0.00 0.00 41.35 4.34
6284 13308 0.322322 TTCGTCCAACAATACCGCCT 59.678 50.000 0.00 0.00 0.00 5.52
6302 13326 3.938963 CGCCTAACCAAAGTATGACATGT 59.061 43.478 0.00 0.00 0.00 3.21
6310 13334 6.817765 CCAAAGTATGACATGTTGGTAAGT 57.182 37.500 0.00 0.00 35.12 2.24
6385 13410 5.499004 TCAACACATAAAACCTAGGCTCT 57.501 39.130 9.30 0.00 0.00 4.09
6389 13414 6.808321 ACACATAAAACCTAGGCTCTGATA 57.192 37.500 9.30 0.00 0.00 2.15
6395 13420 4.537945 AACCTAGGCTCTGATACCACTA 57.462 45.455 9.30 0.00 0.00 2.74
6462 13487 3.819337 AGATCATGGTGATGCATAGCAAC 59.181 43.478 0.00 0.00 43.62 4.17
6483 13509 2.489985 CGAGAGGGGAGGTGTGATCTAT 60.490 54.545 0.00 0.00 0.00 1.98
6534 13560 3.921119 TGGTTGATGTAGTCGTACGTT 57.079 42.857 16.05 7.68 30.95 3.99
6536 13562 3.982701 TGGTTGATGTAGTCGTACGTTTG 59.017 43.478 16.05 0.00 30.95 2.93
6619 13645 1.600023 GATGACGATCCTCGGACTCT 58.400 55.000 1.29 0.00 45.59 3.24
6694 13720 4.307443 TCTTGATGTACTACCATCGCAG 57.693 45.455 0.00 0.00 43.39 5.18
6700 13726 0.750850 TACTACCATCGCAGGGCTTC 59.249 55.000 0.00 0.00 0.00 3.86
6735 13761 6.913132 CCGCTACAATATTATCGAGGACTATG 59.087 42.308 0.00 0.00 0.00 2.23
6748 13774 1.230149 ACTATGGTGGAAGGGGGCA 60.230 57.895 0.00 0.00 0.00 5.36
6867 13893 1.447217 CATCATAGGGCACGCCAGA 59.553 57.895 10.83 2.46 37.98 3.86
6901 13927 1.682740 CTCCGGGAGTAGGACTTCTC 58.317 60.000 16.15 0.00 33.58 2.87
6930 13956 3.005472 TCCTAGTTGGAATAGGATTCGCG 59.995 47.826 0.00 0.00 43.11 5.87
6956 13982 5.105756 GGTGGAAAAGAGAGAGAGAGAGAAG 60.106 48.000 0.00 0.00 0.00 2.85
6964 13990 0.759060 GAGAGAGAGAAGGAGGGGGC 60.759 65.000 0.00 0.00 0.00 5.80
7128 14155 4.013728 CAGTAAAATCCCGATTTCACCCA 58.986 43.478 3.25 0.00 39.88 4.51
7137 14164 2.484264 CCGATTTCACCCAGAACACTTC 59.516 50.000 0.00 0.00 35.56 3.01
7241 14268 2.265589 GGGACTCCGAAAAACCTTCA 57.734 50.000 0.00 0.00 0.00 3.02
7244 14271 2.548480 GGACTCCGAAAAACCTTCAGTG 59.452 50.000 0.00 0.00 0.00 3.66
7252 14279 4.984161 CGAAAAACCTTCAGTGCATCAAAT 59.016 37.500 0.00 0.00 0.00 2.32
7345 14372 9.986825 ATGTAGACATGACCGAGATACGTCTCA 62.987 44.444 0.00 0.00 41.89 3.27
7553 14582 3.637694 TCGTTCCGTAATACATCATCCCA 59.362 43.478 0.00 0.00 0.00 4.37
7637 14667 2.104281 TGAGATACCTCTCCGACGATCA 59.896 50.000 0.00 0.00 46.28 2.92
7733 14763 1.202557 TCACCCAGTTACGTTGTGACC 60.203 52.381 0.00 0.00 31.45 4.02
7819 14849 9.167311 GGAACATGTATAAGTCATGAAGAAAGT 57.833 33.333 0.00 0.00 43.47 2.66
8211 15243 5.808042 AACTCGATGTTCTAGCGTACTTA 57.192 39.130 0.00 0.00 39.64 2.24
8287 15319 5.950758 ATTGATGTGTTAACGTGGCTAAA 57.049 34.783 0.26 0.00 0.00 1.85
8313 15345 6.790319 AGTGGATAGGTAATTGGTTCAAGTT 58.210 36.000 0.00 0.00 0.00 2.66
8467 15501 3.342377 TCGACCTTAAATGTGCCATCA 57.658 42.857 0.00 0.00 0.00 3.07
8514 15548 4.136978 TCCTGAAGGAGGACAGGC 57.863 61.111 0.00 0.00 46.96 4.85
8527 15561 1.348036 GGACAGGCTCTACACCTTTGT 59.652 52.381 0.00 0.00 40.02 2.83
8781 15816 6.239120 GCCAAATTACCTCATTGAGTATGCAT 60.239 38.462 12.54 3.79 34.06 3.96
8851 15886 5.045213 ACATCAGAGAAGGTCTAGAGAGTGA 60.045 44.000 0.00 0.00 32.51 3.41
8862 15897 5.337975 GGTCTAGAGAGTGAAAAAGAGGCAT 60.338 44.000 0.00 0.00 0.00 4.40
8999 16034 6.922407 AGTTTACTTCTGTTAGAACGAAGGAC 59.078 38.462 20.57 16.95 40.47 3.85
9343 16544 0.682209 GTGGACGGGGTAGCAGAGTA 60.682 60.000 0.00 0.00 0.00 2.59
9705 20866 2.158234 AGGCATGGAAGTGGGGTTTTTA 60.158 45.455 0.00 0.00 0.00 1.52
9730 20891 4.201666 TGTTGCGAAAATTCAAAAGTGTGC 60.202 37.500 0.00 0.00 0.00 4.57
9736 20897 5.920273 CGAAAATTCAAAAGTGTGCTACCAT 59.080 36.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
228 240 4.520492 ACAGCAAAATCTCGAAACATTCCT 59.480 37.500 0.00 0.00 0.00 3.36
373 392 5.008712 CGTGCCTCACATGTCTACTAAGATA 59.991 44.000 0.00 0.00 33.40 1.98
502 521 2.881074 CACAACCGTGACTCTATGAGG 58.119 52.381 0.00 0.00 46.80 3.86
1043 1062 3.062466 CCTCCGTGCTCTGGTCGA 61.062 66.667 0.00 0.00 0.00 4.20
1092 1111 6.205030 TCCTTGAGGTGCACTTTGTAGTGT 62.205 45.833 17.98 0.00 43.75 3.55
1093 1112 3.744214 TCCTTGAGGTGCACTTTGTAGTG 60.744 47.826 17.98 1.03 44.19 2.74
1236 1255 3.383505 CCCTGGTATACTCGACATCAACA 59.616 47.826 2.25 0.00 0.00 3.33
1280 1299 4.368315 CATGCATAACTGTAGAACCGCTA 58.632 43.478 0.00 0.00 0.00 4.26
1394 1413 7.291411 TCTAATCAAATTTCCGGGTGAAAAA 57.709 32.000 0.00 0.00 45.67 1.94
1496 1515 5.743636 TTACTACGTTCCCCAACACTAAT 57.256 39.130 0.00 0.00 32.14 1.73
1497 1516 5.743636 ATTACTACGTTCCCCAACACTAA 57.256 39.130 0.00 0.00 32.14 2.24
1546 1565 4.895668 TGCTATGCATCACCATGATCTA 57.104 40.909 0.19 0.00 34.28 1.98
1570 1589 2.938428 AGATCACACTCTCCCCTCTT 57.062 50.000 0.00 0.00 0.00 2.85
1810 1829 5.220228 CGATAATATTGTAGCGGTGCTTAGC 60.220 44.000 3.95 0.00 40.44 3.09
1998 2017 2.047296 AGGATTGGGGGAGAAGTCCTAA 59.953 50.000 0.00 0.00 43.36 2.69
2024 2043 1.341531 CCACCTCGCGAATCCTATTCT 59.658 52.381 11.33 0.00 0.00 2.40
2077 2096 4.012721 AAGGAGAGAGGGGGCCGT 62.013 66.667 0.00 0.00 0.00 5.68
2138 2160 4.775253 CCTTAGTGGAAGAAGAGAAGAGGT 59.225 45.833 0.00 0.00 37.33 3.85
2144 2166 2.188817 GGGCCTTAGTGGAAGAAGAGA 58.811 52.381 0.84 0.00 37.33 3.10
2476 2498 6.643106 TGTAGGAGACAATATGGGCATCCAA 61.643 44.000 4.74 0.00 40.11 3.53
2492 2514 9.575868 AAAGATCTTCGTAGAATATGTAGGAGA 57.424 33.333 8.78 0.00 45.90 3.71
2693 2715 5.079689 TCGGTAATGCACATCACTTAAGA 57.920 39.130 10.09 0.00 0.00 2.10
2707 2729 1.048724 TCAGGGCCCTCTCGGTAATG 61.049 60.000 25.77 8.69 0.00 1.90
2740 2762 2.586258 AGGATTTGTCACTCCGATCG 57.414 50.000 8.51 8.51 36.62 3.69
2812 2834 6.596497 ACAACGTAACTGGGTGATTATAAAGG 59.404 38.462 0.00 0.00 0.00 3.11
2940 2962 6.693315 TTAGCTTAGCACCCAATCATTTAC 57.307 37.500 7.07 0.00 0.00 2.01
2945 2967 3.201930 TCCATTAGCTTAGCACCCAATCA 59.798 43.478 7.07 0.00 0.00 2.57
2949 2971 3.554934 CATTCCATTAGCTTAGCACCCA 58.445 45.455 7.07 0.00 0.00 4.51
2990 3012 4.697514 ACGGGATCACATCATTAGTTGAG 58.302 43.478 0.00 0.00 37.89 3.02
3029 3051 5.982890 ATGTTTCCTAACCATGGACAAAG 57.017 39.130 21.47 9.40 33.15 2.77
3234 3256 2.165437 GACTCTAGTGCAAGTGGGAGAG 59.835 54.545 0.00 0.00 37.14 3.20
3274 3296 4.780815 TCCATGGGTGTTAGAATCATCAC 58.219 43.478 13.02 0.00 0.00 3.06
3275 3297 4.686944 GCTCCATGGGTGTTAGAATCATCA 60.687 45.833 13.02 0.00 0.00 3.07
3276 3298 3.817647 GCTCCATGGGTGTTAGAATCATC 59.182 47.826 13.02 0.00 0.00 2.92
3308 3330 1.173043 TCCACGGGCAAAACATGATC 58.827 50.000 0.00 0.00 0.00 2.92
3309 3331 1.545582 CTTCCACGGGCAAAACATGAT 59.454 47.619 0.00 0.00 0.00 2.45
3310 3332 0.958091 CTTCCACGGGCAAAACATGA 59.042 50.000 0.00 0.00 0.00 3.07
3311 3333 0.958091 TCTTCCACGGGCAAAACATG 59.042 50.000 0.00 0.00 0.00 3.21
3312 3334 1.247567 CTCTTCCACGGGCAAAACAT 58.752 50.000 0.00 0.00 0.00 2.71
3313 3335 0.821711 CCTCTTCCACGGGCAAAACA 60.822 55.000 0.00 0.00 0.00 2.83
3314 3336 1.956802 CCTCTTCCACGGGCAAAAC 59.043 57.895 0.00 0.00 0.00 2.43
3315 3337 1.901464 GCCTCTTCCACGGGCAAAA 60.901 57.895 0.00 0.00 44.69 2.44
3316 3338 2.282180 GCCTCTTCCACGGGCAAA 60.282 61.111 0.00 0.00 44.69 3.68
3319 3341 1.153349 CTAAGCCTCTTCCACGGGC 60.153 63.158 0.00 0.00 45.57 6.13
3320 3342 0.175989 GACTAAGCCTCTTCCACGGG 59.824 60.000 0.00 0.00 0.00 5.28
3321 3343 0.895530 TGACTAAGCCTCTTCCACGG 59.104 55.000 0.00 0.00 0.00 4.94
3322 3344 2.338500 GTTGACTAAGCCTCTTCCACG 58.662 52.381 0.00 0.00 0.00 4.94
3323 3345 2.338500 CGTTGACTAAGCCTCTTCCAC 58.662 52.381 0.00 0.00 0.00 4.02
3324 3346 1.275291 CCGTTGACTAAGCCTCTTCCA 59.725 52.381 0.00 0.00 0.00 3.53
3325 3347 1.405661 CCCGTTGACTAAGCCTCTTCC 60.406 57.143 0.00 0.00 0.00 3.46
3326 3348 1.275573 ACCCGTTGACTAAGCCTCTTC 59.724 52.381 0.00 0.00 0.00 2.87
3327 3349 1.275573 GACCCGTTGACTAAGCCTCTT 59.724 52.381 0.00 0.00 0.00 2.85
3328 3350 0.896226 GACCCGTTGACTAAGCCTCT 59.104 55.000 0.00 0.00 0.00 3.69
3329 3351 0.896226 AGACCCGTTGACTAAGCCTC 59.104 55.000 0.00 0.00 0.00 4.70
3330 3352 0.608640 CAGACCCGTTGACTAAGCCT 59.391 55.000 0.00 0.00 0.00 4.58
3331 3353 1.019805 GCAGACCCGTTGACTAAGCC 61.020 60.000 0.00 0.00 0.00 4.35
3332 3354 0.037232 AGCAGACCCGTTGACTAAGC 60.037 55.000 0.00 0.00 0.00 3.09
3333 3355 2.230508 TGTAGCAGACCCGTTGACTAAG 59.769 50.000 0.00 0.00 0.00 2.18
3334 3356 2.241160 TGTAGCAGACCCGTTGACTAA 58.759 47.619 0.00 0.00 0.00 2.24
3335 3357 1.913778 TGTAGCAGACCCGTTGACTA 58.086 50.000 0.00 0.00 0.00 2.59
3336 3358 1.267121 ATGTAGCAGACCCGTTGACT 58.733 50.000 0.00 0.00 0.00 3.41
3337 3359 2.000447 GAATGTAGCAGACCCGTTGAC 59.000 52.381 0.00 0.00 0.00 3.18
3338 3360 1.621317 TGAATGTAGCAGACCCGTTGA 59.379 47.619 0.00 0.00 0.00 3.18
3339 3361 2.002586 CTGAATGTAGCAGACCCGTTG 58.997 52.381 0.00 0.00 35.39 4.10
3340 3362 1.676014 GCTGAATGTAGCAGACCCGTT 60.676 52.381 0.00 0.00 43.17 4.44
3341 3363 0.108138 GCTGAATGTAGCAGACCCGT 60.108 55.000 0.00 0.00 43.17 5.28
3342 3364 0.176680 AGCTGAATGTAGCAGACCCG 59.823 55.000 0.00 0.00 46.07 5.28
3343 3365 1.474143 GGAGCTGAATGTAGCAGACCC 60.474 57.143 0.00 0.00 46.07 4.46
3344 3366 1.208052 TGGAGCTGAATGTAGCAGACC 59.792 52.381 0.00 0.00 46.07 3.85
3345 3367 2.680312 TGGAGCTGAATGTAGCAGAC 57.320 50.000 0.00 0.00 46.07 3.51
3346 3368 4.346127 ACATATGGAGCTGAATGTAGCAGA 59.654 41.667 7.80 0.00 46.07 4.26
3347 3369 4.639334 ACATATGGAGCTGAATGTAGCAG 58.361 43.478 7.80 0.00 46.07 4.24
3348 3370 4.694760 ACATATGGAGCTGAATGTAGCA 57.305 40.909 7.80 0.00 46.07 3.49
3349 3371 6.638610 AGATACATATGGAGCTGAATGTAGC 58.361 40.000 4.50 11.65 40.02 3.58
3350 3372 9.579768 GTAAGATACATATGGAGCTGAATGTAG 57.420 37.037 6.44 0.00 38.00 2.74
3351 3373 9.088987 TGTAAGATACATATGGAGCTGAATGTA 57.911 33.333 6.44 0.00 38.71 2.29
3352 3374 7.966812 TGTAAGATACATATGGAGCTGAATGT 58.033 34.615 6.44 0.00 36.56 2.71
3353 3375 8.837788 TTGTAAGATACATATGGAGCTGAATG 57.162 34.615 6.44 0.00 38.68 2.67
3355 3377 9.494271 GATTTGTAAGATACATATGGAGCTGAA 57.506 33.333 6.44 0.65 38.68 3.02
3356 3378 8.874156 AGATTTGTAAGATACATATGGAGCTGA 58.126 33.333 6.44 0.00 38.68 4.26
3357 3379 9.149225 GAGATTTGTAAGATACATATGGAGCTG 57.851 37.037 6.44 0.00 38.68 4.24
3358 3380 9.099071 AGAGATTTGTAAGATACATATGGAGCT 57.901 33.333 0.00 0.00 38.68 4.09
3367 3389 8.861086 GGGAGACATAGAGATTTGTAAGATACA 58.139 37.037 0.00 0.00 36.79 2.29
3368 3390 8.861086 TGGGAGACATAGAGATTTGTAAGATAC 58.139 37.037 0.00 0.00 0.00 2.24
3369 3391 8.861086 GTGGGAGACATAGAGATTTGTAAGATA 58.139 37.037 0.00 0.00 0.00 1.98
3370 3392 7.202047 GGTGGGAGACATAGAGATTTGTAAGAT 60.202 40.741 0.00 0.00 0.00 2.40
3371 3393 6.098409 GGTGGGAGACATAGAGATTTGTAAGA 59.902 42.308 0.00 0.00 0.00 2.10
3372 3394 6.098982 AGGTGGGAGACATAGAGATTTGTAAG 59.901 42.308 0.00 0.00 0.00 2.34
3373 3395 5.964477 AGGTGGGAGACATAGAGATTTGTAA 59.036 40.000 0.00 0.00 0.00 2.41
3374 3396 5.363868 CAGGTGGGAGACATAGAGATTTGTA 59.636 44.000 0.00 0.00 0.00 2.41
3375 3397 4.163078 CAGGTGGGAGACATAGAGATTTGT 59.837 45.833 0.00 0.00 0.00 2.83
3376 3398 4.444022 CCAGGTGGGAGACATAGAGATTTG 60.444 50.000 0.00 0.00 40.01 2.32
3377 3399 3.713764 CCAGGTGGGAGACATAGAGATTT 59.286 47.826 0.00 0.00 40.01 2.17
3378 3400 3.051803 TCCAGGTGGGAGACATAGAGATT 60.052 47.826 0.00 0.00 42.15 2.40
3379 3401 2.520120 TCCAGGTGGGAGACATAGAGAT 59.480 50.000 0.00 0.00 42.15 2.75
3380 3402 1.930204 TCCAGGTGGGAGACATAGAGA 59.070 52.381 0.00 0.00 42.15 3.10
3381 3403 2.461300 TCCAGGTGGGAGACATAGAG 57.539 55.000 0.00 0.00 42.15 2.43
3390 3412 3.948425 GGATCTAGTCCAGGTGGGA 57.052 57.895 0.00 0.00 46.96 4.37
3406 3428 0.463654 CGCTTCAATTCCATCCGGGA 60.464 55.000 0.00 0.00 46.61 5.14
3407 3429 0.748005 ACGCTTCAATTCCATCCGGG 60.748 55.000 0.00 0.00 38.37 5.73
3408 3430 0.657840 GACGCTTCAATTCCATCCGG 59.342 55.000 0.00 0.00 0.00 5.14
3409 3431 1.656652 AGACGCTTCAATTCCATCCG 58.343 50.000 0.00 0.00 0.00 4.18
3410 3432 4.082787 TCAAAAGACGCTTCAATTCCATCC 60.083 41.667 0.00 0.00 0.00 3.51
3411 3433 5.046910 TCAAAAGACGCTTCAATTCCATC 57.953 39.130 0.00 0.00 0.00 3.51
3412 3434 5.047802 ACATCAAAAGACGCTTCAATTCCAT 60.048 36.000 0.00 0.00 0.00 3.41
3413 3435 4.278170 ACATCAAAAGACGCTTCAATTCCA 59.722 37.500 0.00 0.00 0.00 3.53
3414 3436 4.618489 CACATCAAAAGACGCTTCAATTCC 59.382 41.667 0.00 0.00 0.00 3.01
3415 3437 4.089065 GCACATCAAAAGACGCTTCAATTC 59.911 41.667 0.00 0.00 0.00 2.17
3416 3438 3.983344 GCACATCAAAAGACGCTTCAATT 59.017 39.130 0.00 0.00 0.00 2.32
3417 3439 3.254166 AGCACATCAAAAGACGCTTCAAT 59.746 39.130 0.00 0.00 0.00 2.57
3418 3440 2.618241 AGCACATCAAAAGACGCTTCAA 59.382 40.909 0.00 0.00 0.00 2.69
3419 3441 2.221169 AGCACATCAAAAGACGCTTCA 58.779 42.857 0.00 0.00 0.00 3.02
3420 3442 2.975851 CAAGCACATCAAAAGACGCTTC 59.024 45.455 0.00 0.00 37.60 3.86
3421 3443 2.287788 CCAAGCACATCAAAAGACGCTT 60.288 45.455 0.00 0.00 40.16 4.68
3422 3444 1.267806 CCAAGCACATCAAAAGACGCT 59.732 47.619 0.00 0.00 0.00 5.07
3423 3445 1.001378 ACCAAGCACATCAAAAGACGC 60.001 47.619 0.00 0.00 0.00 5.19
3424 3446 3.003689 AGAACCAAGCACATCAAAAGACG 59.996 43.478 0.00 0.00 0.00 4.18
3425 3447 4.574599 AGAACCAAGCACATCAAAAGAC 57.425 40.909 0.00 0.00 0.00 3.01
3426 3448 5.596836 AAAGAACCAAGCACATCAAAAGA 57.403 34.783 0.00 0.00 0.00 2.52
3427 3449 5.581874 ACAAAAGAACCAAGCACATCAAAAG 59.418 36.000 0.00 0.00 0.00 2.27
3428 3450 5.350914 CACAAAAGAACCAAGCACATCAAAA 59.649 36.000 0.00 0.00 0.00 2.44
3429 3451 4.869297 CACAAAAGAACCAAGCACATCAAA 59.131 37.500 0.00 0.00 0.00 2.69
3430 3452 4.159321 TCACAAAAGAACCAAGCACATCAA 59.841 37.500 0.00 0.00 0.00 2.57
3431 3453 3.698539 TCACAAAAGAACCAAGCACATCA 59.301 39.130 0.00 0.00 0.00 3.07
3432 3454 4.305989 TCACAAAAGAACCAAGCACATC 57.694 40.909 0.00 0.00 0.00 3.06
3433 3455 4.734398 TTCACAAAAGAACCAAGCACAT 57.266 36.364 0.00 0.00 0.00 3.21
3434 3456 4.241681 GTTTCACAAAAGAACCAAGCACA 58.758 39.130 0.00 0.00 0.00 4.57
3435 3457 3.616821 GGTTTCACAAAAGAACCAAGCAC 59.383 43.478 0.00 0.00 0.00 4.40
3436 3458 3.513515 AGGTTTCACAAAAGAACCAAGCA 59.486 39.130 7.19 0.00 0.00 3.91
3437 3459 3.865164 CAGGTTTCACAAAAGAACCAAGC 59.135 43.478 7.19 0.00 0.00 4.01
3438 3460 4.159506 TCCAGGTTTCACAAAAGAACCAAG 59.840 41.667 7.19 0.02 0.00 3.61
3439 3461 4.090090 TCCAGGTTTCACAAAAGAACCAA 58.910 39.130 7.19 0.00 0.00 3.67
3440 3462 3.702792 TCCAGGTTTCACAAAAGAACCA 58.297 40.909 7.19 0.00 0.00 3.67
3441 3463 4.937201 ATCCAGGTTTCACAAAAGAACC 57.063 40.909 0.00 0.00 0.00 3.62
3442 3464 5.069119 AGGAATCCAGGTTTCACAAAAGAAC 59.931 40.000 11.69 0.00 0.00 3.01
3443 3465 5.208121 AGGAATCCAGGTTTCACAAAAGAA 58.792 37.500 11.69 0.00 0.00 2.52
3444 3466 4.803452 AGGAATCCAGGTTTCACAAAAGA 58.197 39.130 11.69 0.00 0.00 2.52
3445 3467 5.535753 AAGGAATCCAGGTTTCACAAAAG 57.464 39.130 11.69 0.00 0.00 2.27
3446 3468 5.669477 CAAAGGAATCCAGGTTTCACAAAA 58.331 37.500 11.69 0.00 0.00 2.44
3447 3469 4.442753 GCAAAGGAATCCAGGTTTCACAAA 60.443 41.667 11.69 0.00 0.00 2.83
3448 3470 3.069443 GCAAAGGAATCCAGGTTTCACAA 59.931 43.478 11.69 0.00 0.00 3.33
3449 3471 2.627699 GCAAAGGAATCCAGGTTTCACA 59.372 45.455 11.69 0.00 0.00 3.58
3450 3472 2.029020 GGCAAAGGAATCCAGGTTTCAC 60.029 50.000 11.69 2.60 0.00 3.18
3451 3473 2.247358 GGCAAAGGAATCCAGGTTTCA 58.753 47.619 11.69 0.00 0.00 2.69
3452 3474 2.247358 TGGCAAAGGAATCCAGGTTTC 58.753 47.619 0.61 1.89 0.00 2.78
3453 3475 2.397044 TGGCAAAGGAATCCAGGTTT 57.603 45.000 0.61 0.00 0.00 3.27
3454 3476 2.250924 CTTGGCAAAGGAATCCAGGTT 58.749 47.619 0.61 0.00 0.00 3.50
3455 3477 1.928868 CTTGGCAAAGGAATCCAGGT 58.071 50.000 0.61 0.00 0.00 4.00
3465 3487 0.869730 GTGCAATTGCCTTGGCAAAG 59.130 50.000 27.66 22.86 41.18 2.77
3466 3488 0.534652 GGTGCAATTGCCTTGGCAAA 60.535 50.000 27.66 11.23 41.18 3.68
3467 3489 1.071128 GGTGCAATTGCCTTGGCAA 59.929 52.632 26.43 26.43 41.18 4.52
3468 3490 2.102109 CTGGTGCAATTGCCTTGGCA 62.102 55.000 26.94 10.65 41.18 4.92
3469 3491 1.375013 CTGGTGCAATTGCCTTGGC 60.375 57.895 26.94 11.76 41.18 4.52
3470 3492 1.255882 TACTGGTGCAATTGCCTTGG 58.744 50.000 26.94 16.39 41.18 3.61
3471 3493 3.255725 CAATACTGGTGCAATTGCCTTG 58.744 45.455 26.94 16.14 41.18 3.61
3472 3494 2.899256 ACAATACTGGTGCAATTGCCTT 59.101 40.909 26.94 9.40 41.18 4.35
3473 3495 2.493278 GACAATACTGGTGCAATTGCCT 59.507 45.455 26.94 7.34 41.18 4.75
3474 3496 2.230992 TGACAATACTGGTGCAATTGCC 59.769 45.455 26.94 17.54 41.18 4.52
3475 3497 3.244976 GTGACAATACTGGTGCAATTGC 58.755 45.455 23.69 23.69 42.50 3.56
3476 3498 4.502171 TGTGACAATACTGGTGCAATTG 57.498 40.909 0.00 0.00 36.80 2.32
3477 3499 5.528043 TTTGTGACAATACTGGTGCAATT 57.472 34.783 0.00 0.00 0.00 2.32
3478 3500 5.301551 TCTTTTGTGACAATACTGGTGCAAT 59.698 36.000 0.00 0.00 0.00 3.56
3479 3501 4.642437 TCTTTTGTGACAATACTGGTGCAA 59.358 37.500 0.00 0.00 0.00 4.08
3480 3502 4.203226 TCTTTTGTGACAATACTGGTGCA 58.797 39.130 0.00 0.00 0.00 4.57
3481 3503 4.829064 TCTTTTGTGACAATACTGGTGC 57.171 40.909 0.00 0.00 0.00 5.01
3482 3504 7.920151 TGAAAATCTTTTGTGACAATACTGGTG 59.080 33.333 0.00 0.00 0.00 4.17
3483 3505 8.006298 TGAAAATCTTTTGTGACAATACTGGT 57.994 30.769 0.00 0.00 0.00 4.00
3484 3506 9.480053 AATGAAAATCTTTTGTGACAATACTGG 57.520 29.630 0.00 0.00 0.00 4.00
3486 3508 9.480053 CCAATGAAAATCTTTTGTGACAATACT 57.520 29.630 0.00 0.00 0.00 2.12
3487 3509 9.474920 TCCAATGAAAATCTTTTGTGACAATAC 57.525 29.630 0.00 0.00 0.00 1.89
3488 3510 9.474920 GTCCAATGAAAATCTTTTGTGACAATA 57.525 29.630 0.00 0.00 0.00 1.90
3489 3511 7.442062 GGTCCAATGAAAATCTTTTGTGACAAT 59.558 33.333 0.00 0.00 0.00 2.71
3490 3512 6.760770 GGTCCAATGAAAATCTTTTGTGACAA 59.239 34.615 0.00 0.00 0.00 3.18
3491 3513 6.279882 GGTCCAATGAAAATCTTTTGTGACA 58.720 36.000 0.00 0.00 0.00 3.58
3492 3514 5.696270 GGGTCCAATGAAAATCTTTTGTGAC 59.304 40.000 0.00 0.00 0.00 3.67
3493 3515 5.508825 CGGGTCCAATGAAAATCTTTTGTGA 60.509 40.000 0.00 0.00 0.00 3.58
3494 3516 4.685628 CGGGTCCAATGAAAATCTTTTGTG 59.314 41.667 0.00 0.00 0.00 3.33
3495 3517 4.586841 TCGGGTCCAATGAAAATCTTTTGT 59.413 37.500 0.00 0.00 0.00 2.83
3496 3518 5.132897 TCGGGTCCAATGAAAATCTTTTG 57.867 39.130 0.00 0.00 0.00 2.44
3497 3519 5.723295 CATCGGGTCCAATGAAAATCTTTT 58.277 37.500 0.00 0.00 0.00 2.27
3498 3520 4.381932 GCATCGGGTCCAATGAAAATCTTT 60.382 41.667 7.49 0.00 0.00 2.52
3499 3521 3.131046 GCATCGGGTCCAATGAAAATCTT 59.869 43.478 7.49 0.00 0.00 2.40
3500 3522 2.689983 GCATCGGGTCCAATGAAAATCT 59.310 45.455 7.49 0.00 0.00 2.40
3501 3523 2.426738 TGCATCGGGTCCAATGAAAATC 59.573 45.455 7.49 0.00 0.00 2.17
3502 3524 2.166254 GTGCATCGGGTCCAATGAAAAT 59.834 45.455 7.49 0.00 0.00 1.82
3503 3525 1.543802 GTGCATCGGGTCCAATGAAAA 59.456 47.619 7.49 0.00 0.00 2.29
3504 3526 1.173043 GTGCATCGGGTCCAATGAAA 58.827 50.000 7.49 0.00 0.00 2.69
3505 3527 0.327924 AGTGCATCGGGTCCAATGAA 59.672 50.000 7.49 0.00 0.00 2.57
3506 3528 1.138859 CTAGTGCATCGGGTCCAATGA 59.861 52.381 7.49 0.00 0.00 2.57
3507 3529 1.586422 CTAGTGCATCGGGTCCAATG 58.414 55.000 0.00 0.00 0.00 2.82
3508 3530 0.469917 CCTAGTGCATCGGGTCCAAT 59.530 55.000 0.00 0.00 0.00 3.16
3509 3531 0.907704 ACCTAGTGCATCGGGTCCAA 60.908 55.000 0.00 0.00 0.00 3.53
3510 3532 0.032912 TACCTAGTGCATCGGGTCCA 60.033 55.000 10.03 0.00 33.74 4.02
3511 3533 1.000955 CATACCTAGTGCATCGGGTCC 59.999 57.143 10.03 0.00 33.74 4.46
3512 3534 1.961394 TCATACCTAGTGCATCGGGTC 59.039 52.381 10.03 0.00 33.74 4.46
3513 3535 1.687123 GTCATACCTAGTGCATCGGGT 59.313 52.381 11.18 11.18 36.02 5.28
3514 3536 1.686587 TGTCATACCTAGTGCATCGGG 59.313 52.381 0.00 0.00 0.00 5.14
3515 3537 2.545952 GGTGTCATACCTAGTGCATCGG 60.546 54.545 0.00 0.00 46.51 4.18
3516 3538 2.743938 GGTGTCATACCTAGTGCATCG 58.256 52.381 0.00 0.00 46.51 3.84
3527 3549 7.121463 AGTTCATATCCGATCTAGGTGTCATAC 59.879 40.741 0.00 0.00 0.00 2.39
3528 3550 7.175797 AGTTCATATCCGATCTAGGTGTCATA 58.824 38.462 0.00 0.00 0.00 2.15
3529 3551 6.013379 AGTTCATATCCGATCTAGGTGTCAT 58.987 40.000 0.00 0.00 0.00 3.06
3530 3552 5.386060 AGTTCATATCCGATCTAGGTGTCA 58.614 41.667 0.00 0.00 0.00 3.58
3531 3553 5.106078 GGAGTTCATATCCGATCTAGGTGTC 60.106 48.000 0.00 0.00 0.00 3.67
3532 3554 4.767928 GGAGTTCATATCCGATCTAGGTGT 59.232 45.833 0.00 0.00 0.00 4.16
3533 3555 5.013547 AGGAGTTCATATCCGATCTAGGTG 58.986 45.833 0.00 0.00 42.02 4.00
3534 3556 5.263872 AGGAGTTCATATCCGATCTAGGT 57.736 43.478 0.00 0.00 42.02 3.08
3535 3557 5.712446 TGAAGGAGTTCATATCCGATCTAGG 59.288 44.000 0.00 0.00 42.02 3.02
3536 3558 6.825944 TGAAGGAGTTCATATCCGATCTAG 57.174 41.667 0.00 0.00 42.02 2.43
3548 3570 2.834549 GGAGTCTGGATGAAGGAGTTCA 59.165 50.000 0.00 0.00 46.81 3.18
3549 3571 3.103742 AGGAGTCTGGATGAAGGAGTTC 58.896 50.000 0.00 0.00 0.00 3.01
3550 3572 3.197927 AGGAGTCTGGATGAAGGAGTT 57.802 47.619 0.00 0.00 0.00 3.01
3551 3573 2.938428 AGGAGTCTGGATGAAGGAGT 57.062 50.000 0.00 0.00 0.00 3.85
3552 3574 2.100584 CGAAGGAGTCTGGATGAAGGAG 59.899 54.545 0.00 0.00 0.00 3.69
3553 3575 2.103373 CGAAGGAGTCTGGATGAAGGA 58.897 52.381 0.00 0.00 0.00 3.36
3554 3576 1.827969 ACGAAGGAGTCTGGATGAAGG 59.172 52.381 0.00 0.00 0.00 3.46
3555 3577 3.601443 AACGAAGGAGTCTGGATGAAG 57.399 47.619 0.00 0.00 0.00 3.02
3556 3578 3.664107 CAAACGAAGGAGTCTGGATGAA 58.336 45.455 0.00 0.00 0.00 2.57
3557 3579 2.612972 GCAAACGAAGGAGTCTGGATGA 60.613 50.000 0.00 0.00 0.00 2.92
3558 3580 1.734465 GCAAACGAAGGAGTCTGGATG 59.266 52.381 0.00 0.00 0.00 3.51
3559 3581 1.625818 AGCAAACGAAGGAGTCTGGAT 59.374 47.619 0.00 0.00 0.00 3.41
3560 3582 1.048601 AGCAAACGAAGGAGTCTGGA 58.951 50.000 0.00 0.00 0.00 3.86
3561 3583 1.151668 CAGCAAACGAAGGAGTCTGG 58.848 55.000 0.00 0.00 0.00 3.86
3562 3584 0.514691 GCAGCAAACGAAGGAGTCTG 59.485 55.000 0.00 0.00 0.00 3.51
3563 3585 0.394565 AGCAGCAAACGAAGGAGTCT 59.605 50.000 0.00 0.00 0.00 3.24
3564 3586 1.195674 GAAGCAGCAAACGAAGGAGTC 59.804 52.381 0.00 0.00 0.00 3.36
3565 3587 1.230324 GAAGCAGCAAACGAAGGAGT 58.770 50.000 0.00 0.00 0.00 3.85
3566 3588 0.519077 GGAAGCAGCAAACGAAGGAG 59.481 55.000 0.00 0.00 0.00 3.69
3567 3589 1.227999 CGGAAGCAGCAAACGAAGGA 61.228 55.000 0.00 0.00 0.00 3.36
3568 3590 1.207593 CGGAAGCAGCAAACGAAGG 59.792 57.895 0.00 0.00 0.00 3.46
3569 3591 0.586319 TTCGGAAGCAGCAAACGAAG 59.414 50.000 12.25 0.00 38.46 3.79
3570 3592 0.586319 CTTCGGAAGCAGCAAACGAA 59.414 50.000 14.58 14.58 40.69 3.85
3571 3593 2.234613 CTTCGGAAGCAGCAAACGA 58.765 52.632 4.57 0.00 0.00 3.85
3572 3594 4.826600 CTTCGGAAGCAGCAAACG 57.173 55.556 4.57 0.00 0.00 3.60
3581 3603 3.376540 GAGTACATAGCTGCTTCGGAAG 58.623 50.000 7.79 13.39 0.00 3.46
3582 3604 2.100916 GGAGTACATAGCTGCTTCGGAA 59.899 50.000 7.79 0.00 0.00 4.30
3583 3605 1.681793 GGAGTACATAGCTGCTTCGGA 59.318 52.381 7.79 0.00 0.00 4.55
3584 3606 1.600663 CGGAGTACATAGCTGCTTCGG 60.601 57.143 7.79 0.00 0.00 4.30
3585 3607 1.759994 CGGAGTACATAGCTGCTTCG 58.240 55.000 7.79 1.50 0.00 3.79
3586 3608 1.067821 AGCGGAGTACATAGCTGCTTC 59.932 52.381 7.79 0.00 41.19 3.86
3587 3609 1.115467 AGCGGAGTACATAGCTGCTT 58.885 50.000 7.79 0.00 41.19 3.91
3588 3610 1.067821 GAAGCGGAGTACATAGCTGCT 59.932 52.381 7.57 7.57 45.57 4.24
3589 3611 1.202417 TGAAGCGGAGTACATAGCTGC 60.202 52.381 9.22 8.24 40.17 5.25
3590 3612 2.159240 TGTGAAGCGGAGTACATAGCTG 60.159 50.000 9.22 0.00 40.17 4.24
3591 3613 2.100197 TGTGAAGCGGAGTACATAGCT 58.900 47.619 0.00 0.00 42.35 3.32
3592 3614 2.579207 TGTGAAGCGGAGTACATAGC 57.421 50.000 0.00 0.00 0.00 2.97
3593 3615 4.046938 ACATGTGAAGCGGAGTACATAG 57.953 45.455 0.00 0.00 32.86 2.23
3594 3616 4.885325 TCTACATGTGAAGCGGAGTACATA 59.115 41.667 9.11 0.00 32.86 2.29
3595 3617 3.699538 TCTACATGTGAAGCGGAGTACAT 59.300 43.478 9.11 0.00 34.31 2.29
3596 3618 3.086282 TCTACATGTGAAGCGGAGTACA 58.914 45.455 9.11 0.00 0.00 2.90
3597 3619 3.777465 TCTACATGTGAAGCGGAGTAC 57.223 47.619 9.11 0.00 0.00 2.73
3598 3620 3.318275 GGATCTACATGTGAAGCGGAGTA 59.682 47.826 9.11 0.00 0.00 2.59
3599 3621 2.101582 GGATCTACATGTGAAGCGGAGT 59.898 50.000 9.11 0.00 0.00 3.85
3600 3622 2.546795 GGGATCTACATGTGAAGCGGAG 60.547 54.545 9.11 0.00 0.00 4.63
3601 3623 1.412710 GGGATCTACATGTGAAGCGGA 59.587 52.381 9.11 0.00 0.00 5.54
3602 3624 1.869754 CGGGATCTACATGTGAAGCGG 60.870 57.143 9.11 0.00 0.00 5.52
3603 3625 1.491670 CGGGATCTACATGTGAAGCG 58.508 55.000 9.11 0.00 0.00 4.68
3604 3626 1.221414 GCGGGATCTACATGTGAAGC 58.779 55.000 9.11 0.00 0.00 3.86
3605 3627 1.138859 TGGCGGGATCTACATGTGAAG 59.861 52.381 9.11 0.00 0.00 3.02
3606 3628 1.134521 GTGGCGGGATCTACATGTGAA 60.135 52.381 9.11 0.00 0.00 3.18
3607 3629 0.464036 GTGGCGGGATCTACATGTGA 59.536 55.000 9.11 4.49 0.00 3.58
3608 3630 0.875908 CGTGGCGGGATCTACATGTG 60.876 60.000 9.11 0.00 0.00 3.21
3609 3631 1.040893 TCGTGGCGGGATCTACATGT 61.041 55.000 2.69 2.69 0.00 3.21
3610 3632 0.319040 CTCGTGGCGGGATCTACATG 60.319 60.000 0.00 0.00 0.00 3.21
3611 3633 2.041976 CTCGTGGCGGGATCTACAT 58.958 57.895 0.00 0.00 0.00 2.29
3612 3634 2.782222 GCTCGTGGCGGGATCTACA 61.782 63.158 0.00 0.00 0.00 2.74
3613 3635 2.027751 GCTCGTGGCGGGATCTAC 59.972 66.667 0.00 0.00 0.00 2.59
3614 3636 3.224324 GGCTCGTGGCGGGATCTA 61.224 66.667 0.00 0.00 42.94 1.98
3616 3638 4.593864 GAGGCTCGTGGCGGGATC 62.594 72.222 0.00 0.00 44.18 3.36
3619 3641 2.383245 ATATTGAGGCTCGTGGCGGG 62.383 60.000 10.42 0.00 44.18 6.13
3748 10771 7.336679 CCACTTGATTATGAATCACTTGGTACA 59.663 37.037 14.73 0.00 46.90 2.90
4037 11061 7.118825 CGTTGAGCATGAACATTATATCTGGAT 59.881 37.037 0.00 0.00 28.80 3.41
4104 11128 4.080129 ACGGTACCTCTACATCTACCTTCA 60.080 45.833 10.90 0.00 0.00 3.02
4167 11191 2.483745 GACGAGGTGACGATGCGA 59.516 61.111 0.00 0.00 37.03 5.10
4208 11232 2.067013 GCAACTCGAAACAGGGACTAC 58.933 52.381 0.00 0.00 36.02 2.73
4241 11265 5.126067 CCTGGGTATTTGATACTGGTTCTG 58.874 45.833 0.00 0.00 36.04 3.02
4272 11296 5.126545 TGATGTGTACCTTACTAATGCTCGT 59.873 40.000 0.00 0.00 0.00 4.18
4382 11406 1.478510 GCTTCTACTGCAGGCAGACTA 59.521 52.381 26.63 9.50 46.30 2.59
4390 11414 4.991056 TGAAACTAAGTGCTTCTACTGCAG 59.009 41.667 13.48 13.48 41.41 4.41
4406 11430 3.514309 GTCTGGACCTAAGCCTGAAACTA 59.486 47.826 0.00 0.00 35.53 2.24
4438 11462 3.265070 GCAAGTTGCTGTTCAAGAGAG 57.735 47.619 20.71 0.00 40.96 3.20
4462 11486 4.519906 AGGGGAACTTCAAGAAGAACAA 57.480 40.909 16.16 0.00 40.79 2.83
4559 11583 3.056628 CTGAAAGCTGCGGAGGTAG 57.943 57.895 9.67 0.00 0.00 3.18
4595 11619 7.992754 ATGCAAGGGATGAATAAGACTATTC 57.007 36.000 0.00 0.00 42.61 1.75
4655 11679 6.932356 TTGATAGAATTCTCCAATCACTGC 57.068 37.500 12.24 0.00 28.89 4.40
4760 11784 4.252073 CAAGATGGAGGAGAACAGTTCTG 58.748 47.826 21.00 0.00 40.87 3.02
4767 11791 1.065564 AGCTGCAAGATGGAGGAGAAC 60.066 52.381 1.02 0.00 36.25 3.01
4782 11806 6.754193 AGTCTCCAATAAGTTCTATAGCTGC 58.246 40.000 0.00 0.00 0.00 5.25
4783 11807 8.417106 TGAAGTCTCCAATAAGTTCTATAGCTG 58.583 37.037 0.00 0.00 0.00 4.24
4805 11829 7.747155 AATGCCTGAATTGAGAGATATGAAG 57.253 36.000 0.00 0.00 0.00 3.02
4821 11845 7.839907 AGTTAATATTTCAAGCAAATGCCTGA 58.160 30.769 2.64 2.64 43.38 3.86
4822 11846 8.483307 AAGTTAATATTTCAAGCAAATGCCTG 57.517 30.769 0.94 0.00 43.38 4.85
4823 11847 8.313292 TGAAGTTAATATTTCAAGCAAATGCCT 58.687 29.630 0.94 0.00 43.38 4.75
4831 11855 7.970614 CCAGGAGTTGAAGTTAATATTTCAAGC 59.029 37.037 10.94 7.85 42.19 4.01
4879 11903 3.181518 GGACTTCAACGACGTTTTGAACA 60.182 43.478 11.24 4.40 37.91 3.18
4892 11916 2.937149 GGCTTAGAATCGGGACTTCAAC 59.063 50.000 0.00 0.00 0.00 3.18
5027 12051 4.761227 TCATTGCTGCACAGAAGAATTACA 59.239 37.500 0.00 0.00 0.00 2.41
5132 12156 3.119990 CCGTGCTATTGTTCCGTTGAATT 60.120 43.478 0.00 0.00 31.98 2.17
5147 12171 2.168496 GTAGATAGATGGCCCGTGCTA 58.832 52.381 0.00 0.00 37.74 3.49
5416 12440 2.558378 CATATGCAGATATGGCCTCGG 58.442 52.381 3.32 0.00 38.45 4.63
5459 12483 3.243941 ACAGTTGCACACGTGGAATACTA 60.244 43.478 21.57 0.00 42.66 1.82
5468 12492 3.028760 GCAAAACAGTTGCACACGT 57.971 47.368 6.19 0.00 44.34 4.49
5537 12561 2.394708 CGAAAGTTCTTCGTGCTGAGA 58.605 47.619 0.00 0.00 37.18 3.27
5630 12654 8.742777 TCTTTTATGCATCTTATCTTGCTTTGT 58.257 29.630 0.19 0.00 39.60 2.83
5703 12727 2.286872 GGAGATCACAGGCACAAGATG 58.713 52.381 0.00 0.00 0.00 2.90
5724 12748 0.179100 CATGACGGTGCTTCGGAGAT 60.179 55.000 0.00 0.00 35.04 2.75
5728 12752 0.460109 TGATCATGACGGTGCTTCGG 60.460 55.000 0.00 0.00 0.00 4.30
5738 12762 2.205074 GGTGACGATGGTGATCATGAC 58.795 52.381 0.00 0.00 35.97 3.06
5796 12820 3.181451 TGGAAGCATAAGATTGGCGAGAT 60.181 43.478 0.00 0.00 0.00 2.75
5852 12876 2.453080 CAATGCAATCGCGCTGTAAAT 58.547 42.857 5.56 0.00 42.97 1.40
5853 12877 1.893759 CAATGCAATCGCGCTGTAAA 58.106 45.000 5.56 0.00 42.97 2.01
6032 13056 0.310854 AGCAGCCACGTAAAACTTGC 59.689 50.000 0.00 0.00 0.00 4.01
6033 13057 2.411031 CGTAGCAGCCACGTAAAACTTG 60.411 50.000 5.07 0.00 34.74 3.16
6180 13204 3.357079 GTGGCTTGCGGGTGACAG 61.357 66.667 0.00 0.00 0.00 3.51
6244 13268 2.584143 GCCCGGACCGACATTACG 60.584 66.667 17.49 0.00 0.00 3.18
6284 13308 7.940137 ACTTACCAACATGTCATACTTTGGTTA 59.060 33.333 21.88 15.67 46.22 2.85
6310 13334 7.177744 TGAGTTGTGGGCGATATAAGTCATATA 59.822 37.037 0.00 0.00 29.49 0.86
6385 13410 3.109151 ACGTTCCCCAATAGTGGTATCA 58.891 45.455 8.66 0.00 44.30 2.15
6389 13414 2.543635 ACTACGTTCCCCAATAGTGGT 58.456 47.619 8.66 0.00 44.30 4.16
6395 13420 7.527568 TTTTGAAATTACTACGTTCCCCAAT 57.472 32.000 0.00 0.00 0.00 3.16
6462 13487 0.396417 AGATCACACCTCCCCTCTCG 60.396 60.000 0.00 0.00 0.00 4.04
6483 13509 3.119743 CGTTGTCGATCTACAAGGGTACA 60.120 47.826 19.59 0.00 39.92 2.90
6543 13569 2.829043 TTCGGTGCTTGATCGGTCGG 62.829 60.000 0.00 0.00 0.00 4.79
6611 13637 1.205655 CTTTGCTGGATCAGAGTCCGA 59.794 52.381 0.00 0.00 41.35 4.55
6619 13645 0.321564 CCCGACACTTTGCTGGATCA 60.322 55.000 0.00 0.00 0.00 2.92
6700 13726 0.810031 ATTGTAGCGGTGCTTAGGCG 60.810 55.000 3.95 0.00 40.44 5.52
6711 13737 6.913132 CCATAGTCCTCGATAATATTGTAGCG 59.087 42.308 0.00 0.00 34.27 4.26
6860 13886 0.039911 AGTAGGACTCCTTCTGGCGT 59.960 55.000 1.94 0.00 34.61 5.68
6884 13910 2.809952 GGAGAAGTCCTACTCCCGG 58.190 63.158 0.00 0.00 44.70 5.73
6930 13956 4.340617 TCTCTCTCTCTCTTTTCCACCTC 58.659 47.826 0.00 0.00 0.00 3.85
7034 14061 3.369997 GGGCCTTAGTGGAAGAAGAGAAG 60.370 52.174 0.84 0.00 37.33 2.85
7036 14063 2.188817 GGGCCTTAGTGGAAGAAGAGA 58.811 52.381 0.84 0.00 37.33 3.10
7100 14127 7.282450 GGTGAAATCGGGATTTTACTGAAGTAT 59.718 37.037 21.07 0.00 42.99 2.12
7105 14132 4.263550 TGGGTGAAATCGGGATTTTACTGA 60.264 41.667 21.07 10.55 42.99 3.41
7107 14134 4.018779 TCTGGGTGAAATCGGGATTTTACT 60.019 41.667 21.07 0.00 42.99 2.24
7128 14155 7.989741 CCTATGTTTGGATATCAGAAGTGTTCT 59.010 37.037 4.83 0.00 41.70 3.01
7137 14164 5.624159 TGGAAGCCTATGTTTGGATATCAG 58.376 41.667 4.83 0.00 0.00 2.90
7197 14224 0.101399 AGATCACGGACATGACGAGC 59.899 55.000 18.41 0.99 34.93 5.03
7233 14260 3.569701 ACGATTTGATGCACTGAAGGTTT 59.430 39.130 0.00 0.00 0.00 3.27
7241 14268 7.792374 ATGAGTTTATACGATTTGATGCACT 57.208 32.000 0.00 0.00 0.00 4.40
7349 14376 3.551846 CAGGTCCCGCTATTGGTTATTT 58.448 45.455 0.00 0.00 0.00 1.40
7510 14539 4.677250 CGAGTAAAGAGACTTGCCGGTAAT 60.677 45.833 5.11 0.00 0.00 1.89
7637 14667 6.531503 TTCGAGATTAGGATTTGTCACTCT 57.468 37.500 0.00 0.00 0.00 3.24
7733 14763 3.324993 AACACTTTGTGTGCAACCAAAG 58.675 40.909 26.07 26.07 46.79 2.77
7819 14849 6.864685 CCCGATCGTTTAGTATGTTGCTATTA 59.135 38.462 15.09 0.00 0.00 0.98
7950 14981 8.467598 TCTACTTGACTAGCTCGTTAATCAAAT 58.532 33.333 0.00 0.00 0.00 2.32
8166 15198 9.823647 AGTTCAGAAAATAATCTCGTACATCAT 57.176 29.630 0.00 0.00 0.00 2.45
8250 15282 7.099266 ACACATCAATTCAAGAAACTGAACA 57.901 32.000 3.14 0.00 38.12 3.18
8287 15319 7.238710 ACTTGAACCAATTACCTATCCACTTT 58.761 34.615 0.00 0.00 0.00 2.66
8370 15402 6.183360 ACGAAAACATTTCAGAAACTGCTACA 60.183 34.615 0.00 0.00 0.00 2.74
8514 15548 2.288825 TGAAGCCGACAAAGGTGTAGAG 60.289 50.000 0.00 0.00 38.41 2.43
8659 15694 1.155889 CACGCTACCTGCAACATCAA 58.844 50.000 0.00 0.00 43.06 2.57
8792 15827 2.223735 CCATGACTCGTAGGTTGCGTAT 60.224 50.000 0.00 0.00 0.00 3.06
8851 15886 8.616076 CGTCATAATTCTTCTATGCCTCTTTTT 58.384 33.333 0.00 0.00 0.00 1.94
8999 16034 8.498054 AACCTGATACAGATGACATTACAAAG 57.502 34.615 0.00 0.00 32.44 2.77
9181 16216 5.128171 TGTGGACAACTAAAGTGTACTCAGT 59.872 40.000 0.00 0.00 0.00 3.41
9343 16544 6.722129 CCCTGTAACTATGTATTAGGAGCTCT 59.278 42.308 14.64 2.18 31.68 4.09
9705 20866 6.476896 CACACTTTTGAATTTTCGCAACAAT 58.523 32.000 0.00 0.00 0.00 2.71
9730 20891 1.344438 TCGGAAGCATGCCTATGGTAG 59.656 52.381 15.66 0.00 43.81 3.18
9736 20897 1.684450 TCGTATTCGGAAGCATGCCTA 59.316 47.619 15.66 0.00 37.69 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.