Multiple sequence alignment - TraesCS6A01G418000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G418000 chr6A 100.000 2606 0 0 481 3086 616053831 616056436 0.000000e+00 4813
1 TraesCS6A01G418000 chr6A 100.000 328 0 0 1 328 616053351 616053678 9.460000e-170 606
2 TraesCS6A01G418000 chr6A 98.026 152 2 1 178 328 396296004 396295853 2.360000e-66 263
3 TraesCS6A01G418000 chr6A 98.630 146 1 1 2941 3086 554840370 554840226 1.100000e-64 257
4 TraesCS6A01G418000 chr6A 98.621 145 1 1 2942 3086 554845524 554845381 3.950000e-64 255
5 TraesCS6A01G418000 chr6D 92.843 1551 74 21 829 2353 471274609 471276148 0.000000e+00 2215
6 TraesCS6A01G418000 chr6D 93.673 1470 61 6 887 2350 459549199 459550642 0.000000e+00 2170
7 TraesCS6A01G418000 chr6D 94.972 1074 48 5 1282 2353 471114187 471113118 0.000000e+00 1679
8 TraesCS6A01G418000 chr6D 85.729 981 104 21 1969 2941 459550778 459551730 0.000000e+00 1003
9 TraesCS6A01G418000 chr6D 93.598 328 18 2 956 1280 471114545 471114218 1.290000e-133 486
10 TraesCS6A01G418000 chr6D 84.091 484 57 13 2460 2939 471276169 471276636 1.690000e-122 449
11 TraesCS6A01G418000 chr6D 81.960 449 54 18 2497 2941 471113078 471112653 3.780000e-94 355
12 TraesCS6A01G418000 chr6D 92.887 239 8 5 481 716 471274270 471274502 3.810000e-89 339
13 TraesCS6A01G418000 chr6D 85.641 195 23 3 518 707 459548504 459548698 1.880000e-47 200
14 TraesCS6A01G418000 chr3A 93.534 1392 80 5 964 2350 574278793 574280179 0.000000e+00 2063
15 TraesCS6A01G418000 chr3A 94.872 1209 61 1 925 2132 574320708 574319500 0.000000e+00 1888
16 TraesCS6A01G418000 chr3A 91.778 450 21 4 481 927 574278354 574278790 2.030000e-171 612
17 TraesCS6A01G418000 chr3A 98.026 152 1 2 179 328 443433456 443433305 2.360000e-66 263
18 TraesCS6A01G418000 chr3A 91.875 160 12 1 2783 2941 574319270 574319111 4.010000e-54 222
19 TraesCS6A01G418000 chr3A 81.604 212 23 9 521 716 574321913 574321702 8.860000e-36 161
20 TraesCS6A01G418000 chr6B 93.101 1406 85 10 955 2353 719423220 719424620 0.000000e+00 2049
21 TraesCS6A01G418000 chr6B 83.333 444 57 10 2497 2939 719308788 719308361 8.020000e-106 394
22 TraesCS6A01G418000 chr6B 81.757 444 54 18 2502 2941 719424659 719425079 2.280000e-91 346
23 TraesCS6A01G418000 chr2B 88.575 1453 107 28 918 2353 771418245 771416835 0.000000e+00 1709
24 TraesCS6A01G418000 chr2B 92.879 983 42 6 1373 2353 771488135 771487179 0.000000e+00 1402
25 TraesCS6A01G418000 chr2B 83.620 989 108 31 1969 2939 771416700 771415748 0.000000e+00 880
26 TraesCS6A01G418000 chr2B 82.329 730 93 24 1969 2693 771480731 771480033 4.400000e-168 601
27 TraesCS6A01G418000 chr2B 88.976 254 23 4 2686 2939 771479866 771479618 2.990000e-80 309
28 TraesCS6A01G418000 chr2B 98.026 152 2 1 177 328 691994586 691994436 2.360000e-66 263
29 TraesCS6A01G418000 chr2B 89.947 189 14 3 481 668 771420181 771419997 3.980000e-59 239
30 TraesCS6A01G418000 chr2B 88.298 188 16 5 481 668 771488976 771488795 1.440000e-53 220
31 TraesCS6A01G418000 chr7D 82.541 1409 158 48 1541 2941 600865885 600864557 0.000000e+00 1158
32 TraesCS6A01G418000 chr7D 85.410 329 37 4 928 1253 600866235 600865915 6.380000e-87 331
33 TraesCS6A01G418000 chr7D 98.630 146 1 1 2941 3086 51674361 51674505 1.100000e-64 257
34 TraesCS6A01G418000 chr7D 98.621 145 1 1 2942 3086 51669536 51669679 3.950000e-64 255
35 TraesCS6A01G418000 chr7D 98.621 145 1 1 2942 3086 102738041 102737898 3.950000e-64 255
36 TraesCS6A01G418000 chr7B 79.927 1096 157 33 928 2011 707884242 707883198 0.000000e+00 747
37 TraesCS6A01G418000 chr7B 86.364 462 38 10 2485 2941 680074965 680074524 5.980000e-132 481
38 TraesCS6A01G418000 chr7B 87.452 263 29 3 963 1225 680076307 680076049 1.800000e-77 300
39 TraesCS6A01G418000 chr7B 98.701 154 1 1 175 328 637491030 637491182 3.920000e-69 272
40 TraesCS6A01G418000 chr7B 86.154 195 20 4 2499 2691 707880919 707880730 1.450000e-48 204
41 TraesCS6A01G418000 chr7A 80.795 906 122 30 1543 2441 692785753 692784893 0.000000e+00 662
42 TraesCS6A01G418000 chr7A 86.127 346 30 7 2496 2840 692784897 692784569 1.050000e-94 357
43 TraesCS6A01G418000 chr5A 98.667 150 2 0 179 328 585069439 585069588 1.820000e-67 267
44 TraesCS6A01G418000 chr5A 99.310 145 1 0 184 328 585069409 585069265 2.360000e-66 263
45 TraesCS6A01G418000 chr1B 99.315 146 1 0 183 328 477940046 477940191 6.560000e-67 265
46 TraesCS6A01G418000 chr5B 98.649 148 2 0 181 328 677324094 677323947 2.360000e-66 263
47 TraesCS6A01G418000 chr5B 98.630 146 1 1 2941 3086 605409724 605409580 1.100000e-64 257
48 TraesCS6A01G418000 chr5B 98.621 145 1 1 2942 3086 605414554 605414411 3.950000e-64 255
49 TraesCS6A01G418000 chr2A 95.732 164 3 4 166 328 572433810 572433970 8.490000e-66 261
50 TraesCS6A01G418000 chr4A 98.630 146 1 1 2941 3086 669565572 669565716 1.100000e-64 257
51 TraesCS6A01G418000 chr2D 98.630 146 1 1 2941 3086 562728243 562728387 1.100000e-64 257


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G418000 chr6A 616053351 616056436 3085 False 2709.500000 4813 100.000000 1 3086 2 chr6A.!!$F1 3085
1 TraesCS6A01G418000 chr6D 459548504 459551730 3226 False 1124.333333 2170 88.347667 518 2941 3 chr6D.!!$F1 2423
2 TraesCS6A01G418000 chr6D 471274270 471276636 2366 False 1001.000000 2215 89.940333 481 2939 3 chr6D.!!$F2 2458
3 TraesCS6A01G418000 chr6D 471112653 471114545 1892 True 840.000000 1679 90.176667 956 2941 3 chr6D.!!$R1 1985
4 TraesCS6A01G418000 chr3A 574278354 574280179 1825 False 1337.500000 2063 92.656000 481 2350 2 chr3A.!!$F1 1869
5 TraesCS6A01G418000 chr3A 574319111 574321913 2802 True 757.000000 1888 89.450333 521 2941 3 chr3A.!!$R2 2420
6 TraesCS6A01G418000 chr6B 719423220 719425079 1859 False 1197.500000 2049 87.429000 955 2941 2 chr6B.!!$F1 1986
7 TraesCS6A01G418000 chr2B 771415748 771420181 4433 True 942.666667 1709 87.380667 481 2939 3 chr2B.!!$R2 2458
8 TraesCS6A01G418000 chr2B 771487179 771488976 1797 True 811.000000 1402 90.588500 481 2353 2 chr2B.!!$R4 1872
9 TraesCS6A01G418000 chr2B 771479618 771480731 1113 True 455.000000 601 85.652500 1969 2939 2 chr2B.!!$R3 970
10 TraesCS6A01G418000 chr7D 600864557 600866235 1678 True 744.500000 1158 83.975500 928 2941 2 chr7D.!!$R2 2013
11 TraesCS6A01G418000 chr7B 707880730 707884242 3512 True 475.500000 747 83.040500 928 2691 2 chr7B.!!$R2 1763
12 TraesCS6A01G418000 chr7B 680074524 680076307 1783 True 390.500000 481 86.908000 963 2941 2 chr7B.!!$R1 1978
13 TraesCS6A01G418000 chr7A 692784569 692785753 1184 True 509.500000 662 83.461000 1543 2840 2 chr7A.!!$R1 1297

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
506 507 0.037303 CAGCACACCTCCTCCATGTT 59.963 55.0 0.00 0.00 0.0 2.71 F
603 625 0.105039 GAAGATCGGATCGGCAGGTT 59.895 55.0 12.08 0.34 0.0 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1695 5928 1.194781 GCACCTCTCCTTCCCTCACA 61.195 60.000 0.00 0.00 0.00 3.58 R
2461 7893 1.195448 CGACACATGTGCTTTGTCTCC 59.805 52.381 25.68 3.31 37.99 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.554670 CGAACGTTTGATTCCTCGATC 57.445 47.619 10.16 0.00 0.00 3.69
21 22 2.281762 CGAACGTTTGATTCCTCGATCC 59.718 50.000 10.16 0.00 0.00 3.36
22 23 2.311124 ACGTTTGATTCCTCGATCCC 57.689 50.000 0.00 0.00 0.00 3.85
23 24 1.209128 CGTTTGATTCCTCGATCCCG 58.791 55.000 0.00 0.00 37.07 5.14
24 25 0.938008 GTTTGATTCCTCGATCCCGC 59.062 55.000 0.00 0.00 35.37 6.13
25 26 0.179056 TTTGATTCCTCGATCCCGCC 60.179 55.000 0.00 0.00 35.37 6.13
26 27 2.049063 GATTCCTCGATCCCGCCG 60.049 66.667 0.00 0.00 35.37 6.46
27 28 2.520982 ATTCCTCGATCCCGCCGA 60.521 61.111 0.00 0.00 35.37 5.54
28 29 1.878656 GATTCCTCGATCCCGCCGAT 61.879 60.000 0.00 0.00 35.35 4.18
29 30 2.159819 ATTCCTCGATCCCGCCGATG 62.160 60.000 0.00 0.00 35.35 3.84
30 31 4.363990 CCTCGATCCCGCCGATGG 62.364 72.222 0.00 0.00 35.35 3.51
31 32 3.295273 CTCGATCCCGCCGATGGA 61.295 66.667 0.00 0.00 34.81 3.41
32 33 3.274455 CTCGATCCCGCCGATGGAG 62.274 68.421 7.87 7.87 44.36 3.86
33 34 4.363990 CGATCCCGCCGATGGAGG 62.364 72.222 0.00 0.00 42.46 4.30
34 35 2.917751 GATCCCGCCGATGGAGGA 60.918 66.667 7.23 2.43 45.77 3.71
35 36 2.919856 ATCCCGCCGATGGAGGAG 60.920 66.667 7.23 0.00 45.77 3.69
38 39 4.598894 CCGCCGATGGAGGAGCTG 62.599 72.222 0.00 0.00 45.77 4.24
39 40 3.531207 CGCCGATGGAGGAGCTGA 61.531 66.667 0.00 0.00 0.00 4.26
40 41 2.865598 CGCCGATGGAGGAGCTGAT 61.866 63.158 0.00 0.00 0.00 2.90
41 42 1.005156 GCCGATGGAGGAGCTGATC 60.005 63.158 0.00 0.00 0.00 2.92
42 43 1.752358 GCCGATGGAGGAGCTGATCA 61.752 60.000 0.00 0.00 0.00 2.92
43 44 0.317799 CCGATGGAGGAGCTGATCAG 59.682 60.000 18.84 18.84 0.00 2.90
61 62 4.431131 CAGTGGGCTGGCGGGAAT 62.431 66.667 0.00 0.00 39.01 3.01
62 63 4.431131 AGTGGGCTGGCGGGAATG 62.431 66.667 0.00 0.00 0.00 2.67
67 68 4.115199 GCTGGCGGGAATGGACCT 62.115 66.667 0.00 0.00 0.00 3.85
68 69 2.190578 CTGGCGGGAATGGACCTC 59.809 66.667 0.00 0.00 0.00 3.85
69 70 2.285368 TGGCGGGAATGGACCTCT 60.285 61.111 0.00 0.00 0.00 3.69
70 71 2.317149 CTGGCGGGAATGGACCTCTC 62.317 65.000 0.00 0.00 0.00 3.20
71 72 2.506472 GCGGGAATGGACCTCTCC 59.494 66.667 4.30 4.30 37.04 3.71
79 80 2.901975 TGGACCTCTCCATCTTCCG 58.098 57.895 0.00 0.00 42.15 4.30
80 81 1.330655 TGGACCTCTCCATCTTCCGC 61.331 60.000 0.00 0.00 42.15 5.54
81 82 1.066587 GACCTCTCCATCTTCCGCG 59.933 63.158 0.00 0.00 0.00 6.46
82 83 2.356818 GACCTCTCCATCTTCCGCGG 62.357 65.000 22.12 22.12 0.00 6.46
83 84 2.279784 CTCTCCATCTTCCGCGGC 60.280 66.667 23.51 0.00 0.00 6.53
84 85 4.207281 TCTCCATCTTCCGCGGCG 62.207 66.667 23.51 16.78 0.00 6.46
113 114 4.475135 GCAGAAGCCGAGGGGGAC 62.475 72.222 0.00 0.00 38.47 4.46
114 115 4.148825 CAGAAGCCGAGGGGGACG 62.149 72.222 0.00 0.00 38.47 4.79
127 128 3.357079 GGACGCCAGTGCCACAAG 61.357 66.667 0.00 0.00 32.08 3.16
128 129 2.280797 GACGCCAGTGCCACAAGA 60.281 61.111 0.00 0.00 0.00 3.02
129 130 1.891919 GACGCCAGTGCCACAAGAA 60.892 57.895 0.00 0.00 0.00 2.52
130 131 1.228245 ACGCCAGTGCCACAAGAAT 60.228 52.632 0.00 0.00 0.00 2.40
131 132 1.210931 CGCCAGTGCCACAAGAATG 59.789 57.895 0.00 0.00 0.00 2.67
132 133 1.080298 GCCAGTGCCACAAGAATGC 60.080 57.895 0.00 0.00 0.00 3.56
133 134 1.808531 GCCAGTGCCACAAGAATGCA 61.809 55.000 0.00 0.00 0.00 3.96
134 135 0.242825 CCAGTGCCACAAGAATGCAG 59.757 55.000 0.00 0.00 35.33 4.41
135 136 1.241165 CAGTGCCACAAGAATGCAGA 58.759 50.000 0.00 0.00 35.33 4.26
136 137 1.199327 CAGTGCCACAAGAATGCAGAG 59.801 52.381 0.00 0.00 35.33 3.35
137 138 0.524862 GTGCCACAAGAATGCAGAGG 59.475 55.000 0.00 0.00 35.33 3.69
138 139 0.609957 TGCCACAAGAATGCAGAGGG 60.610 55.000 0.00 0.00 0.00 4.30
139 140 0.322816 GCCACAAGAATGCAGAGGGA 60.323 55.000 0.00 0.00 0.00 4.20
140 141 1.747709 CCACAAGAATGCAGAGGGAG 58.252 55.000 0.00 0.00 0.00 4.30
141 142 1.681166 CCACAAGAATGCAGAGGGAGG 60.681 57.143 0.00 0.00 0.00 4.30
142 143 1.280133 CACAAGAATGCAGAGGGAGGA 59.720 52.381 0.00 0.00 0.00 3.71
143 144 1.558756 ACAAGAATGCAGAGGGAGGAG 59.441 52.381 0.00 0.00 0.00 3.69
144 145 1.836166 CAAGAATGCAGAGGGAGGAGA 59.164 52.381 0.00 0.00 0.00 3.71
145 146 2.238144 CAAGAATGCAGAGGGAGGAGAA 59.762 50.000 0.00 0.00 0.00 2.87
146 147 2.117865 AGAATGCAGAGGGAGGAGAAG 58.882 52.381 0.00 0.00 0.00 2.85
147 148 2.114616 GAATGCAGAGGGAGGAGAAGA 58.885 52.381 0.00 0.00 0.00 2.87
148 149 1.494960 ATGCAGAGGGAGGAGAAGAC 58.505 55.000 0.00 0.00 0.00 3.01
149 150 0.616111 TGCAGAGGGAGGAGAAGACC 60.616 60.000 0.00 0.00 0.00 3.85
150 151 0.616111 GCAGAGGGAGGAGAAGACCA 60.616 60.000 0.00 0.00 0.00 4.02
151 152 1.944177 CAGAGGGAGGAGAAGACCAA 58.056 55.000 0.00 0.00 0.00 3.67
152 153 1.830477 CAGAGGGAGGAGAAGACCAAG 59.170 57.143 0.00 0.00 0.00 3.61
153 154 1.199615 GAGGGAGGAGAAGACCAAGG 58.800 60.000 0.00 0.00 0.00 3.61
154 155 0.793617 AGGGAGGAGAAGACCAAGGA 59.206 55.000 0.00 0.00 0.00 3.36
155 156 1.367848 AGGGAGGAGAAGACCAAGGAT 59.632 52.381 0.00 0.00 0.00 3.24
156 157 1.488393 GGGAGGAGAAGACCAAGGATG 59.512 57.143 0.00 0.00 0.00 3.51
157 158 2.192263 GGAGGAGAAGACCAAGGATGT 58.808 52.381 0.00 0.00 0.00 3.06
158 159 2.093235 GGAGGAGAAGACCAAGGATGTG 60.093 54.545 0.00 0.00 0.00 3.21
159 160 2.834549 GAGGAGAAGACCAAGGATGTGA 59.165 50.000 0.00 0.00 0.00 3.58
160 161 2.836981 AGGAGAAGACCAAGGATGTGAG 59.163 50.000 0.00 0.00 0.00 3.51
161 162 2.569404 GGAGAAGACCAAGGATGTGAGT 59.431 50.000 0.00 0.00 0.00 3.41
162 163 3.769844 GGAGAAGACCAAGGATGTGAGTA 59.230 47.826 0.00 0.00 0.00 2.59
163 164 4.223032 GGAGAAGACCAAGGATGTGAGTAA 59.777 45.833 0.00 0.00 0.00 2.24
164 165 5.413309 AGAAGACCAAGGATGTGAGTAAG 57.587 43.478 0.00 0.00 0.00 2.34
165 166 5.087323 AGAAGACCAAGGATGTGAGTAAGA 58.913 41.667 0.00 0.00 0.00 2.10
166 167 5.544176 AGAAGACCAAGGATGTGAGTAAGAA 59.456 40.000 0.00 0.00 0.00 2.52
167 168 5.153950 AGACCAAGGATGTGAGTAAGAAC 57.846 43.478 0.00 0.00 0.00 3.01
168 169 4.020128 AGACCAAGGATGTGAGTAAGAACC 60.020 45.833 0.00 0.00 0.00 3.62
169 170 3.650942 ACCAAGGATGTGAGTAAGAACCA 59.349 43.478 0.00 0.00 0.00 3.67
170 171 4.289672 ACCAAGGATGTGAGTAAGAACCAT 59.710 41.667 0.00 0.00 0.00 3.55
171 172 4.637534 CCAAGGATGTGAGTAAGAACCATG 59.362 45.833 0.00 0.00 0.00 3.66
172 173 5.491070 CAAGGATGTGAGTAAGAACCATGA 58.509 41.667 0.00 0.00 0.00 3.07
173 174 5.965033 AGGATGTGAGTAAGAACCATGAT 57.035 39.130 0.00 0.00 0.00 2.45
174 175 5.678583 AGGATGTGAGTAAGAACCATGATG 58.321 41.667 0.00 0.00 0.00 3.07
175 176 5.426509 AGGATGTGAGTAAGAACCATGATGA 59.573 40.000 0.00 0.00 0.00 2.92
176 177 5.757320 GGATGTGAGTAAGAACCATGATGAG 59.243 44.000 0.00 0.00 0.00 2.90
177 178 4.507710 TGTGAGTAAGAACCATGATGAGC 58.492 43.478 0.00 0.00 0.00 4.26
178 179 4.020307 TGTGAGTAAGAACCATGATGAGCA 60.020 41.667 0.00 0.00 0.00 4.26
179 180 5.121811 GTGAGTAAGAACCATGATGAGCAT 58.878 41.667 0.00 0.00 37.85 3.79
180 181 6.127083 TGTGAGTAAGAACCATGATGAGCATA 60.127 38.462 0.00 0.00 34.82 3.14
181 182 6.933521 GTGAGTAAGAACCATGATGAGCATAT 59.066 38.462 0.00 0.00 34.82 1.78
182 183 7.443575 GTGAGTAAGAACCATGATGAGCATATT 59.556 37.037 0.00 0.00 34.82 1.28
183 184 7.443272 TGAGTAAGAACCATGATGAGCATATTG 59.557 37.037 0.00 0.00 34.82 1.90
184 185 7.512130 AGTAAGAACCATGATGAGCATATTGA 58.488 34.615 0.00 0.00 34.82 2.57
185 186 6.879276 AAGAACCATGATGAGCATATTGAG 57.121 37.500 0.00 0.00 34.82 3.02
186 187 5.314529 AGAACCATGATGAGCATATTGAGG 58.685 41.667 0.00 0.00 34.82 3.86
187 188 4.987963 ACCATGATGAGCATATTGAGGA 57.012 40.909 0.00 0.00 34.82 3.71
188 189 4.649692 ACCATGATGAGCATATTGAGGAC 58.350 43.478 0.00 0.00 34.82 3.85
189 190 3.683340 CCATGATGAGCATATTGAGGACG 59.317 47.826 0.00 0.00 34.82 4.79
190 191 4.313282 CATGATGAGCATATTGAGGACGT 58.687 43.478 0.00 0.00 34.82 4.34
191 192 3.721035 TGATGAGCATATTGAGGACGTG 58.279 45.455 0.00 0.00 0.00 4.49
192 193 2.602257 TGAGCATATTGAGGACGTGG 57.398 50.000 0.00 0.00 0.00 4.94
193 194 1.138859 TGAGCATATTGAGGACGTGGG 59.861 52.381 0.00 0.00 0.00 4.61
194 195 0.179045 AGCATATTGAGGACGTGGGC 60.179 55.000 0.00 0.00 0.00 5.36
195 196 0.463654 GCATATTGAGGACGTGGGCA 60.464 55.000 0.00 0.00 0.00 5.36
196 197 1.815408 GCATATTGAGGACGTGGGCAT 60.815 52.381 0.00 0.00 0.00 4.40
197 198 2.549992 GCATATTGAGGACGTGGGCATA 60.550 50.000 0.00 0.00 0.00 3.14
198 199 3.329386 CATATTGAGGACGTGGGCATAG 58.671 50.000 0.00 0.00 0.00 2.23
199 200 0.179045 ATTGAGGACGTGGGCATAGC 60.179 55.000 0.00 0.00 0.00 2.97
209 210 3.924507 GGCATAGCCCAGTGGTTG 58.075 61.111 8.74 1.51 44.06 3.77
210 211 1.754234 GGCATAGCCCAGTGGTTGG 60.754 63.158 8.74 0.00 44.06 3.77
221 222 4.059304 TGGTTGGGGGCGCATGAT 62.059 61.111 10.83 0.00 0.00 2.45
222 223 2.759560 GGTTGGGGGCGCATGATT 60.760 61.111 10.83 0.00 0.00 2.57
223 224 2.495866 GTTGGGGGCGCATGATTG 59.504 61.111 10.83 0.00 0.00 2.67
224 225 2.037049 TTGGGGGCGCATGATTGT 59.963 55.556 10.83 0.00 0.00 2.71
225 226 1.034838 GTTGGGGGCGCATGATTGTA 61.035 55.000 10.83 0.00 0.00 2.41
226 227 0.323816 TTGGGGGCGCATGATTGTAA 60.324 50.000 10.83 0.00 0.00 2.41
227 228 0.323816 TGGGGGCGCATGATTGTAAA 60.324 50.000 10.83 0.00 0.00 2.01
228 229 0.102300 GGGGGCGCATGATTGTAAAC 59.898 55.000 10.83 0.00 0.00 2.01
229 230 0.102300 GGGGCGCATGATTGTAAACC 59.898 55.000 10.83 0.00 0.00 3.27
230 231 1.102978 GGGCGCATGATTGTAAACCT 58.897 50.000 10.83 0.00 0.00 3.50
231 232 2.294074 GGGCGCATGATTGTAAACCTA 58.706 47.619 10.83 0.00 0.00 3.08
232 233 2.685897 GGGCGCATGATTGTAAACCTAA 59.314 45.455 10.83 0.00 0.00 2.69
233 234 3.488553 GGGCGCATGATTGTAAACCTAAC 60.489 47.826 10.83 0.00 0.00 2.34
234 235 3.350912 GCGCATGATTGTAAACCTAACG 58.649 45.455 0.30 0.00 0.00 3.18
235 236 3.062909 GCGCATGATTGTAAACCTAACGA 59.937 43.478 0.30 0.00 0.00 3.85
236 237 4.574759 CGCATGATTGTAAACCTAACGAC 58.425 43.478 0.00 0.00 0.00 4.34
237 238 4.493545 CGCATGATTGTAAACCTAACGACC 60.494 45.833 0.00 0.00 0.00 4.79
238 239 4.393680 GCATGATTGTAAACCTAACGACCA 59.606 41.667 0.00 0.00 0.00 4.02
239 240 5.447279 GCATGATTGTAAACCTAACGACCAG 60.447 44.000 0.00 0.00 0.00 4.00
240 241 5.471556 TGATTGTAAACCTAACGACCAGA 57.528 39.130 0.00 0.00 0.00 3.86
241 242 5.475719 TGATTGTAAACCTAACGACCAGAG 58.524 41.667 0.00 0.00 0.00 3.35
242 243 4.942761 TTGTAAACCTAACGACCAGAGT 57.057 40.909 0.00 0.00 0.00 3.24
243 244 4.942761 TGTAAACCTAACGACCAGAGTT 57.057 40.909 0.00 0.00 35.75 3.01
244 245 4.874970 TGTAAACCTAACGACCAGAGTTC 58.125 43.478 0.00 0.00 33.42 3.01
245 246 2.719426 AACCTAACGACCAGAGTTCG 57.281 50.000 0.00 0.00 33.42 3.95
246 247 1.901591 ACCTAACGACCAGAGTTCGA 58.098 50.000 0.00 0.00 33.42 3.71
247 248 2.444421 ACCTAACGACCAGAGTTCGAT 58.556 47.619 0.00 0.00 33.42 3.59
248 249 2.422832 ACCTAACGACCAGAGTTCGATC 59.577 50.000 0.00 0.00 33.42 3.69
249 250 2.223525 CCTAACGACCAGAGTTCGATCC 60.224 54.545 0.00 0.00 33.42 3.36
250 251 1.254026 AACGACCAGAGTTCGATCCA 58.746 50.000 0.00 0.00 0.00 3.41
251 252 0.526662 ACGACCAGAGTTCGATCCAC 59.473 55.000 0.00 0.00 0.00 4.02
252 253 0.523546 CGACCAGAGTTCGATCCACG 60.524 60.000 0.00 0.00 44.09 4.94
253 254 0.526662 GACCAGAGTTCGATCCACGT 59.473 55.000 0.00 0.00 43.13 4.49
254 255 0.526662 ACCAGAGTTCGATCCACGTC 59.473 55.000 0.00 0.00 43.13 4.34
255 256 0.523546 CCAGAGTTCGATCCACGTCG 60.524 60.000 0.00 0.00 43.13 5.12
256 257 0.523546 CAGAGTTCGATCCACGTCGG 60.524 60.000 0.00 0.00 41.74 4.79
257 258 1.226603 GAGTTCGATCCACGTCGGG 60.227 63.158 0.00 0.00 41.74 5.14
258 259 2.202703 GTTCGATCCACGTCGGGG 60.203 66.667 7.38 7.38 41.74 5.73
259 260 2.361483 TTCGATCCACGTCGGGGA 60.361 61.111 20.66 20.66 41.74 4.81
260 261 2.703798 TTCGATCCACGTCGGGGAC 61.704 63.158 20.83 11.97 41.74 4.46
284 285 6.388435 GAATTTCTGGAATTCTCATGAGGG 57.612 41.667 22.42 0.00 46.59 4.30
285 286 5.722172 ATTTCTGGAATTCTCATGAGGGA 57.278 39.130 22.42 12.00 0.00 4.20
286 287 5.722172 TTTCTGGAATTCTCATGAGGGAT 57.278 39.130 22.42 13.69 0.00 3.85
287 288 4.701651 TCTGGAATTCTCATGAGGGATG 57.298 45.455 22.42 7.14 0.00 3.51
288 289 3.147629 CTGGAATTCTCATGAGGGATGC 58.852 50.000 22.42 14.53 31.32 3.91
289 290 2.781757 TGGAATTCTCATGAGGGATGCT 59.218 45.455 22.42 3.80 31.32 3.79
290 291 3.203710 TGGAATTCTCATGAGGGATGCTT 59.796 43.478 22.42 7.33 31.32 3.91
291 292 3.819902 GGAATTCTCATGAGGGATGCTTC 59.180 47.826 22.42 14.34 31.32 3.86
292 293 4.446023 GGAATTCTCATGAGGGATGCTTCT 60.446 45.833 22.42 2.49 31.32 2.85
293 294 4.792513 ATTCTCATGAGGGATGCTTCTT 57.207 40.909 22.42 0.00 31.32 2.52
294 295 3.834489 TCTCATGAGGGATGCTTCTTC 57.166 47.619 22.42 0.00 31.32 2.87
295 296 3.382278 TCTCATGAGGGATGCTTCTTCT 58.618 45.455 22.42 0.00 31.32 2.85
296 297 4.550669 TCTCATGAGGGATGCTTCTTCTA 58.449 43.478 22.42 0.00 31.32 2.10
297 298 5.153675 TCTCATGAGGGATGCTTCTTCTAT 58.846 41.667 22.42 0.00 31.32 1.98
298 299 6.318112 TCTCATGAGGGATGCTTCTTCTATA 58.682 40.000 22.42 0.00 31.32 1.31
299 300 6.958778 TCTCATGAGGGATGCTTCTTCTATAT 59.041 38.462 22.42 0.00 31.32 0.86
300 301 7.123997 TCTCATGAGGGATGCTTCTTCTATATC 59.876 40.741 22.42 0.00 31.32 1.63
301 302 6.727697 TCATGAGGGATGCTTCTTCTATATCA 59.272 38.462 0.00 0.00 31.32 2.15
302 303 7.236225 TCATGAGGGATGCTTCTTCTATATCAA 59.764 37.037 0.00 0.00 31.32 2.57
303 304 7.565190 TGAGGGATGCTTCTTCTATATCAAT 57.435 36.000 0.00 0.00 0.00 2.57
304 305 8.670521 TGAGGGATGCTTCTTCTATATCAATA 57.329 34.615 0.00 0.00 0.00 1.90
305 306 9.104713 TGAGGGATGCTTCTTCTATATCAATAA 57.895 33.333 0.00 0.00 0.00 1.40
306 307 9.950496 GAGGGATGCTTCTTCTATATCAATAAA 57.050 33.333 0.00 0.00 0.00 1.40
307 308 9.732130 AGGGATGCTTCTTCTATATCAATAAAC 57.268 33.333 0.00 0.00 0.00 2.01
308 309 8.951243 GGGATGCTTCTTCTATATCAATAAACC 58.049 37.037 0.00 0.00 0.00 3.27
309 310 8.660373 GGATGCTTCTTCTATATCAATAAACCG 58.340 37.037 0.00 0.00 0.00 4.44
310 311 9.209175 GATGCTTCTTCTATATCAATAAACCGT 57.791 33.333 0.00 0.00 0.00 4.83
311 312 8.365399 TGCTTCTTCTATATCAATAAACCGTG 57.635 34.615 0.00 0.00 0.00 4.94
312 313 7.441157 TGCTTCTTCTATATCAATAAACCGTGG 59.559 37.037 0.00 0.00 0.00 4.94
313 314 7.095187 GCTTCTTCTATATCAATAAACCGTGGG 60.095 40.741 0.00 0.00 0.00 4.61
314 315 7.369551 TCTTCTATATCAATAAACCGTGGGT 57.630 36.000 0.00 0.00 37.65 4.51
315 316 7.214381 TCTTCTATATCAATAAACCGTGGGTG 58.786 38.462 0.00 0.00 35.34 4.61
316 317 5.302360 TCTATATCAATAAACCGTGGGTGC 58.698 41.667 0.00 0.00 35.34 5.01
317 318 2.507407 ATCAATAAACCGTGGGTGCT 57.493 45.000 0.00 0.00 35.34 4.40
318 319 3.637911 ATCAATAAACCGTGGGTGCTA 57.362 42.857 0.00 0.00 35.34 3.49
319 320 2.980568 TCAATAAACCGTGGGTGCTAG 58.019 47.619 0.00 0.00 35.34 3.42
320 321 2.303600 TCAATAAACCGTGGGTGCTAGT 59.696 45.455 0.00 0.00 35.34 2.57
321 322 2.396590 ATAAACCGTGGGTGCTAGTG 57.603 50.000 0.00 0.00 35.34 2.74
322 323 0.320946 TAAACCGTGGGTGCTAGTGC 60.321 55.000 0.00 0.00 35.34 4.40
323 324 3.546714 AACCGTGGGTGCTAGTGCC 62.547 63.158 0.00 0.00 35.34 5.01
324 325 3.706373 CCGTGGGTGCTAGTGCCT 61.706 66.667 5.03 0.00 38.71 4.75
325 326 2.355986 CCGTGGGTGCTAGTGCCTA 61.356 63.158 5.03 0.00 38.71 3.93
326 327 1.686325 CCGTGGGTGCTAGTGCCTAT 61.686 60.000 5.03 0.00 38.71 2.57
327 328 0.530650 CGTGGGTGCTAGTGCCTATG 60.531 60.000 5.03 1.54 38.71 2.23
506 507 0.037303 CAGCACACCTCCTCCATGTT 59.963 55.000 0.00 0.00 0.00 2.71
562 584 1.007721 CAGGAGGAAGAGGAGGAGGAA 59.992 57.143 0.00 0.00 0.00 3.36
563 585 1.290732 AGGAGGAAGAGGAGGAGGAAG 59.709 57.143 0.00 0.00 0.00 3.46
564 586 1.289530 GGAGGAAGAGGAGGAGGAAGA 59.710 57.143 0.00 0.00 0.00 2.87
565 587 2.666317 GAGGAAGAGGAGGAGGAAGAG 58.334 57.143 0.00 0.00 0.00 2.85
566 588 1.290732 AGGAAGAGGAGGAGGAAGAGG 59.709 57.143 0.00 0.00 0.00 3.69
567 589 1.289530 GGAAGAGGAGGAGGAAGAGGA 59.710 57.143 0.00 0.00 0.00 3.71
597 619 0.540830 AGGGAGGAAGATCGGATCGG 60.541 60.000 12.08 0.00 0.00 4.18
603 625 0.105039 GAAGATCGGATCGGCAGGTT 59.895 55.000 12.08 0.34 0.00 3.50
655 677 0.460311 AATTCGGCTCCTTCGACGAT 59.540 50.000 0.00 0.00 36.30 3.73
675 721 4.517075 CGATCAGAGTAATCACCTCTAGCA 59.483 45.833 0.00 0.00 37.18 3.49
743 829 4.107622 GCAAATTCATTCGTTCATGGGAG 58.892 43.478 0.00 0.00 0.00 4.30
759 845 1.202627 GGGAGCTTGCTCTACTGATGG 60.203 57.143 20.12 0.00 0.00 3.51
781 867 4.563337 CACAAATGCACCTCATCCATAG 57.437 45.455 0.00 0.00 33.40 2.23
824 910 2.642807 CAGGGGTTAGTCCTCCAAAGAA 59.357 50.000 0.00 0.00 37.41 2.52
1026 3433 1.585895 TTACATTCGGACCCATCCCA 58.414 50.000 0.00 0.00 42.83 4.37
1050 3457 1.174783 ACGCGAGACCTCATTGTACT 58.825 50.000 15.93 0.00 0.00 2.73
1169 3576 3.070018 ACAATCGCAACTTCCTCTTCAG 58.930 45.455 0.00 0.00 0.00 3.02
1208 3615 1.847968 AGGTCCTCACCCAACAGGG 60.848 63.158 0.00 0.00 45.12 4.45
1563 4020 0.259065 TCCGCTCTGGTATCCTCTGT 59.741 55.000 0.00 0.00 39.52 3.41
1695 5928 2.338984 GTCGCCGAGGTCACAACT 59.661 61.111 0.00 0.00 0.00 3.16
1882 6121 2.124570 GCGATGATGGTGGTGGCT 60.125 61.111 0.00 0.00 0.00 4.75
1905 6144 3.335534 GTCGTTGTTGCGCGAGGT 61.336 61.111 12.10 0.00 37.82 3.85
2058 6312 2.509916 GCAGAGGAGAGGGCATGG 59.490 66.667 0.00 0.00 0.00 3.66
2096 6350 1.745653 TCCTGTGTAGTGATCAGCTCG 59.254 52.381 0.00 0.00 0.00 5.03
2133 6389 4.283722 ACGGAGGTTCTTCTATGTCTGTTT 59.716 41.667 0.00 0.00 0.00 2.83
2145 6401 6.530120 TCTATGTCTGTTTAGCCTTGTTTGA 58.470 36.000 0.00 0.00 0.00 2.69
2230 6577 2.617308 TGATTCTCCGTATGACCGTCTC 59.383 50.000 0.00 0.00 0.00 3.36
2331 7188 7.674471 AGAAGTAAAACCTGAAAGATGCTAC 57.326 36.000 0.00 0.00 34.07 3.58
2506 7938 6.502652 CGCAAATTCACCCACATATCATTTA 58.497 36.000 0.00 0.00 0.00 1.40
2518 7950 6.237808 CCACATATCATTTAAAGTTTTGCGGC 60.238 38.462 0.00 0.00 0.00 6.53
2560 7993 1.266989 GCGTTGCAGGCTTCTACTTTT 59.733 47.619 4.72 0.00 0.00 2.27
2561 7994 2.918131 GCGTTGCAGGCTTCTACTTTTG 60.918 50.000 4.72 0.00 0.00 2.44
2610 8045 6.649155 TGATAATCATGAACTTCGGAGGAAA 58.351 36.000 0.00 0.00 0.00 3.13
2672 8111 3.642705 TGAGATGCGACTCAAATATCGG 58.357 45.455 9.64 0.00 42.79 4.18
2745 8366 2.283145 GCATATCTTGCCCATGAGGT 57.717 50.000 0.00 0.00 46.15 3.85
2746 8367 2.157738 GCATATCTTGCCCATGAGGTC 58.842 52.381 0.00 0.00 46.15 3.85
2747 8368 2.487805 GCATATCTTGCCCATGAGGTCA 60.488 50.000 0.00 0.00 46.15 4.02
2748 8369 3.813240 GCATATCTTGCCCATGAGGTCAT 60.813 47.826 0.00 0.00 46.15 3.06
2749 8370 5.875108 GCATATCTTGCCCATGAGGTCATG 61.875 50.000 12.29 12.29 45.86 3.07
2773 8394 8.567285 TGAGAATCATAGAGACTATCGCATAA 57.433 34.615 0.00 0.00 42.56 1.90
2774 8395 8.672815 TGAGAATCATAGAGACTATCGCATAAG 58.327 37.037 0.00 0.00 42.56 1.73
2775 8396 8.574251 AGAATCATAGAGACTATCGCATAAGT 57.426 34.615 0.00 0.00 0.00 2.24
2941 8578 2.809601 GTTCGCGCCACAGACGAT 60.810 61.111 0.00 0.00 35.48 3.73
2942 8579 2.809174 TTCGCGCCACAGACGATG 60.809 61.111 0.00 0.00 35.48 3.84
2943 8580 3.567478 TTCGCGCCACAGACGATGT 62.567 57.895 0.00 0.00 45.43 3.06
2944 8581 3.112075 CGCGCCACAGACGATGTT 61.112 61.111 0.00 0.00 41.41 2.71
2945 8582 1.803922 CGCGCCACAGACGATGTTA 60.804 57.895 0.00 0.00 41.41 2.41
2946 8583 1.742900 CGCGCCACAGACGATGTTAG 61.743 60.000 0.00 0.00 41.41 2.34
2947 8584 0.457853 GCGCCACAGACGATGTTAGA 60.458 55.000 0.00 0.00 41.41 2.10
2948 8585 1.990799 CGCCACAGACGATGTTAGAA 58.009 50.000 0.00 0.00 41.41 2.10
2949 8586 1.920574 CGCCACAGACGATGTTAGAAG 59.079 52.381 0.00 0.00 41.41 2.85
2950 8587 2.671351 CGCCACAGACGATGTTAGAAGT 60.671 50.000 0.00 0.00 41.41 3.01
2951 8588 3.326747 GCCACAGACGATGTTAGAAGTT 58.673 45.455 0.00 0.00 41.41 2.66
2952 8589 4.491676 GCCACAGACGATGTTAGAAGTTA 58.508 43.478 0.00 0.00 41.41 2.24
2953 8590 4.927425 GCCACAGACGATGTTAGAAGTTAA 59.073 41.667 0.00 0.00 41.41 2.01
2954 8591 5.581085 GCCACAGACGATGTTAGAAGTTAAT 59.419 40.000 0.00 0.00 41.41 1.40
2955 8592 6.237861 GCCACAGACGATGTTAGAAGTTAATC 60.238 42.308 0.00 0.00 41.41 1.75
2956 8593 7.036220 CCACAGACGATGTTAGAAGTTAATCT 58.964 38.462 0.00 0.00 41.41 2.40
2957 8594 8.188799 CCACAGACGATGTTAGAAGTTAATCTA 58.811 37.037 0.00 0.00 41.41 1.98
2958 8595 9.227490 CACAGACGATGTTAGAAGTTAATCTAG 57.773 37.037 0.00 0.00 41.41 2.43
2959 8596 8.958506 ACAGACGATGTTAGAAGTTAATCTAGT 58.041 33.333 0.00 0.00 39.96 2.57
2960 8597 9.440784 CAGACGATGTTAGAAGTTAATCTAGTC 57.559 37.037 0.00 0.00 33.64 2.59
2961 8598 9.175312 AGACGATGTTAGAAGTTAATCTAGTCA 57.825 33.333 0.00 0.00 33.64 3.41
2962 8599 9.784680 GACGATGTTAGAAGTTAATCTAGTCAA 57.215 33.333 0.00 0.00 33.64 3.18
2998 8635 8.642908 AATTAATTGTTGATCATGCTCATGTG 57.357 30.769 9.41 0.00 39.72 3.21
2999 8636 5.654603 AATTGTTGATCATGCTCATGTGT 57.345 34.783 9.41 0.99 39.72 3.72
3000 8637 5.654603 ATTGTTGATCATGCTCATGTGTT 57.345 34.783 9.41 0.00 39.72 3.32
3001 8638 4.428615 TGTTGATCATGCTCATGTGTTG 57.571 40.909 9.41 0.00 39.72 3.33
3002 8639 4.073549 TGTTGATCATGCTCATGTGTTGA 58.926 39.130 9.41 0.00 39.72 3.18
3003 8640 4.703093 TGTTGATCATGCTCATGTGTTGAT 59.297 37.500 9.41 12.26 39.72 2.57
3004 8641 4.893424 TGATCATGCTCATGTGTTGATG 57.107 40.909 15.45 8.00 39.72 3.07
3005 8642 3.066203 TGATCATGCTCATGTGTTGATGC 59.934 43.478 15.45 10.11 39.72 3.91
3006 8643 2.438411 TCATGCTCATGTGTTGATGCA 58.562 42.857 9.41 0.00 40.39 3.96
3007 8644 3.020984 TCATGCTCATGTGTTGATGCAT 58.979 40.909 0.00 0.00 43.66 3.96
3008 8645 2.931512 TGCTCATGTGTTGATGCATG 57.068 45.000 2.46 0.00 42.62 4.06
3009 8646 2.164338 TGCTCATGTGTTGATGCATGT 58.836 42.857 2.46 0.00 42.09 3.21
3010 8647 2.559231 TGCTCATGTGTTGATGCATGTT 59.441 40.909 2.46 0.00 42.09 2.71
3011 8648 3.006003 TGCTCATGTGTTGATGCATGTTT 59.994 39.130 2.46 0.00 42.09 2.83
3012 8649 3.366724 GCTCATGTGTTGATGCATGTTTG 59.633 43.478 2.46 0.00 42.09 2.93
3013 8650 4.800784 CTCATGTGTTGATGCATGTTTGA 58.199 39.130 2.46 0.00 42.09 2.69
3014 8651 4.548494 TCATGTGTTGATGCATGTTTGAC 58.452 39.130 2.46 0.00 42.09 3.18
3015 8652 4.278919 TCATGTGTTGATGCATGTTTGACT 59.721 37.500 2.46 0.00 42.09 3.41
3016 8653 4.227512 TGTGTTGATGCATGTTTGACTC 57.772 40.909 2.46 0.00 0.00 3.36
3017 8654 3.004629 TGTGTTGATGCATGTTTGACTCC 59.995 43.478 2.46 0.00 0.00 3.85
3018 8655 3.254166 GTGTTGATGCATGTTTGACTCCT 59.746 43.478 2.46 0.00 0.00 3.69
3019 8656 3.253921 TGTTGATGCATGTTTGACTCCTG 59.746 43.478 2.46 0.00 0.00 3.86
3020 8657 1.814394 TGATGCATGTTTGACTCCTGC 59.186 47.619 2.46 0.00 0.00 4.85
3021 8658 1.133790 GATGCATGTTTGACTCCTGCC 59.866 52.381 2.46 0.00 31.89 4.85
3022 8659 0.178995 TGCATGTTTGACTCCTGCCA 60.179 50.000 0.00 0.00 31.89 4.92
3023 8660 1.180029 GCATGTTTGACTCCTGCCAT 58.820 50.000 0.00 0.00 0.00 4.40
3024 8661 1.135199 GCATGTTTGACTCCTGCCATG 60.135 52.381 0.00 0.00 34.32 3.66
3025 8662 2.165167 CATGTTTGACTCCTGCCATGT 58.835 47.619 0.00 0.00 0.00 3.21
3026 8663 1.608055 TGTTTGACTCCTGCCATGTG 58.392 50.000 0.00 0.00 0.00 3.21
3027 8664 1.142667 TGTTTGACTCCTGCCATGTGA 59.857 47.619 0.00 0.00 0.00 3.58
3028 8665 1.808945 GTTTGACTCCTGCCATGTGAG 59.191 52.381 0.00 0.00 0.00 3.51
3029 8666 0.321919 TTGACTCCTGCCATGTGAGC 60.322 55.000 0.00 0.00 0.00 4.26
3030 8667 1.451028 GACTCCTGCCATGTGAGCC 60.451 63.158 0.00 0.00 0.00 4.70
3031 8668 1.908340 GACTCCTGCCATGTGAGCCT 61.908 60.000 0.00 0.00 0.00 4.58
3032 8669 1.451567 CTCCTGCCATGTGAGCCTG 60.452 63.158 0.00 0.00 0.00 4.85
3033 8670 1.907222 CTCCTGCCATGTGAGCCTGA 61.907 60.000 0.00 0.00 0.00 3.86
3034 8671 1.226542 CCTGCCATGTGAGCCTGAT 59.773 57.895 0.00 0.00 0.00 2.90
3035 8672 1.101635 CCTGCCATGTGAGCCTGATG 61.102 60.000 0.00 0.00 0.00 3.07
3036 8673 0.393944 CTGCCATGTGAGCCTGATGT 60.394 55.000 0.00 0.00 0.00 3.06
3037 8674 0.911053 TGCCATGTGAGCCTGATGTA 59.089 50.000 0.00 0.00 0.00 2.29
3038 8675 1.281577 TGCCATGTGAGCCTGATGTAA 59.718 47.619 0.00 0.00 0.00 2.41
3039 8676 2.290832 TGCCATGTGAGCCTGATGTAAA 60.291 45.455 0.00 0.00 0.00 2.01
3040 8677 2.357009 GCCATGTGAGCCTGATGTAAAG 59.643 50.000 0.00 0.00 0.00 1.85
3041 8678 2.947652 CCATGTGAGCCTGATGTAAAGG 59.052 50.000 0.00 0.00 37.91 3.11
3042 8679 3.614092 CATGTGAGCCTGATGTAAAGGT 58.386 45.455 0.00 0.00 37.13 3.50
3043 8680 4.384098 CCATGTGAGCCTGATGTAAAGGTA 60.384 45.833 0.00 0.00 37.13 3.08
3044 8681 4.202245 TGTGAGCCTGATGTAAAGGTAC 57.798 45.455 0.00 0.00 37.13 3.34
3045 8682 3.580895 TGTGAGCCTGATGTAAAGGTACA 59.419 43.478 0.00 0.00 44.29 2.90
3067 8704 1.677208 CACATGTCGTGCATTGTGTG 58.323 50.000 0.00 0.00 39.19 3.82
3068 8705 1.263752 CACATGTCGTGCATTGTGTGA 59.736 47.619 12.40 0.00 37.65 3.58
3069 8706 1.532437 ACATGTCGTGCATTGTGTGAG 59.468 47.619 0.00 0.00 35.19 3.51
3070 8707 1.799994 CATGTCGTGCATTGTGTGAGA 59.200 47.619 0.00 0.00 35.19 3.27
3071 8708 1.501169 TGTCGTGCATTGTGTGAGAG 58.499 50.000 0.00 0.00 0.00 3.20
3072 8709 0.792640 GTCGTGCATTGTGTGAGAGG 59.207 55.000 0.00 0.00 0.00 3.69
3073 8710 0.678950 TCGTGCATTGTGTGAGAGGA 59.321 50.000 0.00 0.00 0.00 3.71
3074 8711 0.792640 CGTGCATTGTGTGAGAGGAC 59.207 55.000 0.00 0.00 0.00 3.85
3075 8712 1.873486 CGTGCATTGTGTGAGAGGACA 60.873 52.381 0.00 0.00 0.00 4.02
3076 8713 2.430465 GTGCATTGTGTGAGAGGACAT 58.570 47.619 0.00 0.00 0.00 3.06
3077 8714 2.161012 GTGCATTGTGTGAGAGGACATG 59.839 50.000 0.00 0.00 0.00 3.21
3078 8715 1.131883 GCATTGTGTGAGAGGACATGC 59.868 52.381 0.00 0.00 0.00 4.06
3079 8716 1.741706 CATTGTGTGAGAGGACATGCC 59.258 52.381 0.00 0.00 0.00 4.40
3080 8717 0.764271 TTGTGTGAGAGGACATGCCA 59.236 50.000 8.58 0.00 40.02 4.92
3081 8718 0.035317 TGTGTGAGAGGACATGCCAC 59.965 55.000 8.58 2.88 40.02 5.01
3082 8719 0.322975 GTGTGAGAGGACATGCCACT 59.677 55.000 8.58 7.25 40.59 4.00
3083 8720 0.322648 TGTGAGAGGACATGCCACTG 59.677 55.000 9.99 0.00 37.74 3.66
3084 8721 0.322975 GTGAGAGGACATGCCACTGT 59.677 55.000 9.99 0.00 37.74 3.55
3085 8722 0.322648 TGAGAGGACATGCCACTGTG 59.677 55.000 9.99 0.00 37.74 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.281762 GGATCGAGGAATCAAACGTTCG 59.718 50.000 0.00 0.00 0.00 3.95
1 2 2.608090 GGGATCGAGGAATCAAACGTTC 59.392 50.000 0.00 0.00 0.00 3.95
2 3 2.629051 GGGATCGAGGAATCAAACGTT 58.371 47.619 0.00 0.00 0.00 3.99
3 4 1.470979 CGGGATCGAGGAATCAAACGT 60.471 52.381 0.00 0.00 39.00 3.99
4 5 1.209128 CGGGATCGAGGAATCAAACG 58.791 55.000 0.00 0.00 39.00 3.60
5 6 0.938008 GCGGGATCGAGGAATCAAAC 59.062 55.000 0.00 0.00 39.00 2.93
6 7 0.179056 GGCGGGATCGAGGAATCAAA 60.179 55.000 0.00 0.00 39.00 2.69
7 8 1.445942 GGCGGGATCGAGGAATCAA 59.554 57.895 0.00 0.00 39.00 2.57
8 9 2.856628 CGGCGGGATCGAGGAATCA 61.857 63.158 0.00 0.00 39.00 2.57
9 10 1.878656 ATCGGCGGGATCGAGGAATC 61.879 60.000 7.21 0.00 40.09 2.52
10 11 1.908793 ATCGGCGGGATCGAGGAAT 60.909 57.895 7.21 0.00 40.09 3.01
11 12 2.520982 ATCGGCGGGATCGAGGAA 60.521 61.111 7.21 0.00 40.09 3.36
12 13 3.295273 CATCGGCGGGATCGAGGA 61.295 66.667 7.21 0.00 40.27 3.71
13 14 4.363990 CCATCGGCGGGATCGAGG 62.364 72.222 7.21 0.00 40.09 4.63
14 15 3.274455 CTCCATCGGCGGGATCGAG 62.274 68.421 7.21 0.00 40.09 4.04
15 16 3.295273 CTCCATCGGCGGGATCGA 61.295 66.667 7.21 0.00 41.04 3.59
16 17 4.363990 CCTCCATCGGCGGGATCG 62.364 72.222 7.21 0.00 39.81 3.69
17 18 2.917751 TCCTCCATCGGCGGGATC 60.918 66.667 7.21 0.00 33.04 3.36
18 19 2.919856 CTCCTCCATCGGCGGGAT 60.920 66.667 7.21 0.00 33.04 3.85
21 22 4.598894 CAGCTCCTCCATCGGCGG 62.599 72.222 7.21 0.00 0.00 6.13
22 23 2.762006 GATCAGCTCCTCCATCGGCG 62.762 65.000 0.00 0.00 0.00 6.46
23 24 1.005156 GATCAGCTCCTCCATCGGC 60.005 63.158 0.00 0.00 0.00 5.54
24 25 0.317799 CTGATCAGCTCCTCCATCGG 59.682 60.000 10.38 0.00 0.00 4.18
25 26 3.890145 CTGATCAGCTCCTCCATCG 57.110 57.895 10.38 0.00 0.00 3.84
44 45 4.431131 ATTCCCGCCAGCCCACTG 62.431 66.667 0.00 0.00 44.05 3.66
45 46 4.431131 CATTCCCGCCAGCCCACT 62.431 66.667 0.00 0.00 0.00 4.00
50 51 4.115199 AGGTCCATTCCCGCCAGC 62.115 66.667 0.00 0.00 0.00 4.85
51 52 2.190578 GAGGTCCATTCCCGCCAG 59.809 66.667 0.00 0.00 0.00 4.85
52 53 2.285368 AGAGGTCCATTCCCGCCA 60.285 61.111 0.00 0.00 0.00 5.69
53 54 2.506472 GAGAGGTCCATTCCCGCC 59.494 66.667 0.00 0.00 0.00 6.13
54 55 2.506472 GGAGAGGTCCATTCCCGC 59.494 66.667 0.00 0.00 43.31 6.13
62 63 1.443828 GCGGAAGATGGAGAGGTCC 59.556 63.158 0.00 0.00 44.24 4.46
63 64 1.066587 CGCGGAAGATGGAGAGGTC 59.933 63.158 0.00 0.00 0.00 3.85
64 65 2.427245 CCGCGGAAGATGGAGAGGT 61.427 63.158 24.07 0.00 0.00 3.85
65 66 2.419198 CCGCGGAAGATGGAGAGG 59.581 66.667 24.07 0.00 0.00 3.69
66 67 2.279784 GCCGCGGAAGATGGAGAG 60.280 66.667 33.48 0.00 0.00 3.20
67 68 4.207281 CGCCGCGGAAGATGGAGA 62.207 66.667 33.48 0.00 31.47 3.71
96 97 4.475135 GTCCCCCTCGGCTTCTGC 62.475 72.222 0.00 0.00 38.76 4.26
97 98 4.148825 CGTCCCCCTCGGCTTCTG 62.149 72.222 0.00 0.00 0.00 3.02
109 110 4.947147 TTGTGGCACTGGCGTCCC 62.947 66.667 19.83 0.00 42.47 4.46
110 111 3.357079 CTTGTGGCACTGGCGTCC 61.357 66.667 19.83 0.00 42.47 4.79
111 112 1.237285 ATTCTTGTGGCACTGGCGTC 61.237 55.000 19.83 0.00 42.47 5.19
112 113 1.228245 ATTCTTGTGGCACTGGCGT 60.228 52.632 19.83 0.00 42.47 5.68
113 114 1.210931 CATTCTTGTGGCACTGGCG 59.789 57.895 19.83 4.57 42.47 5.69
114 115 1.080298 GCATTCTTGTGGCACTGGC 60.080 57.895 19.83 9.24 40.13 4.85
115 116 0.242825 CTGCATTCTTGTGGCACTGG 59.757 55.000 19.83 11.27 33.34 4.00
116 117 1.199327 CTCTGCATTCTTGTGGCACTG 59.801 52.381 19.83 9.30 33.34 3.66
117 118 1.531423 CTCTGCATTCTTGTGGCACT 58.469 50.000 19.83 0.00 33.34 4.40
118 119 0.524862 CCTCTGCATTCTTGTGGCAC 59.475 55.000 11.55 11.55 33.34 5.01
119 120 0.609957 CCCTCTGCATTCTTGTGGCA 60.610 55.000 0.00 0.00 35.96 4.92
120 121 0.322816 TCCCTCTGCATTCTTGTGGC 60.323 55.000 0.00 0.00 0.00 5.01
121 122 1.681166 CCTCCCTCTGCATTCTTGTGG 60.681 57.143 0.00 0.00 0.00 4.17
122 123 1.280133 TCCTCCCTCTGCATTCTTGTG 59.720 52.381 0.00 0.00 0.00 3.33
123 124 1.558756 CTCCTCCCTCTGCATTCTTGT 59.441 52.381 0.00 0.00 0.00 3.16
124 125 1.836166 TCTCCTCCCTCTGCATTCTTG 59.164 52.381 0.00 0.00 0.00 3.02
125 126 2.260639 TCTCCTCCCTCTGCATTCTT 57.739 50.000 0.00 0.00 0.00 2.52
126 127 2.117865 CTTCTCCTCCCTCTGCATTCT 58.882 52.381 0.00 0.00 0.00 2.40
127 128 2.114616 TCTTCTCCTCCCTCTGCATTC 58.885 52.381 0.00 0.00 0.00 2.67
128 129 1.836802 GTCTTCTCCTCCCTCTGCATT 59.163 52.381 0.00 0.00 0.00 3.56
129 130 1.494960 GTCTTCTCCTCCCTCTGCAT 58.505 55.000 0.00 0.00 0.00 3.96
130 131 0.616111 GGTCTTCTCCTCCCTCTGCA 60.616 60.000 0.00 0.00 0.00 4.41
131 132 0.616111 TGGTCTTCTCCTCCCTCTGC 60.616 60.000 0.00 0.00 0.00 4.26
132 133 1.830477 CTTGGTCTTCTCCTCCCTCTG 59.170 57.143 0.00 0.00 0.00 3.35
133 134 1.273552 CCTTGGTCTTCTCCTCCCTCT 60.274 57.143 0.00 0.00 0.00 3.69
134 135 1.199615 CCTTGGTCTTCTCCTCCCTC 58.800 60.000 0.00 0.00 0.00 4.30
135 136 0.793617 TCCTTGGTCTTCTCCTCCCT 59.206 55.000 0.00 0.00 0.00 4.20
136 137 1.488393 CATCCTTGGTCTTCTCCTCCC 59.512 57.143 0.00 0.00 0.00 4.30
137 138 2.093235 CACATCCTTGGTCTTCTCCTCC 60.093 54.545 0.00 0.00 0.00 4.30
138 139 2.834549 TCACATCCTTGGTCTTCTCCTC 59.165 50.000 0.00 0.00 0.00 3.71
139 140 2.836981 CTCACATCCTTGGTCTTCTCCT 59.163 50.000 0.00 0.00 0.00 3.69
140 141 2.569404 ACTCACATCCTTGGTCTTCTCC 59.431 50.000 0.00 0.00 0.00 3.71
141 142 3.971245 ACTCACATCCTTGGTCTTCTC 57.029 47.619 0.00 0.00 0.00 2.87
142 143 5.087323 TCTTACTCACATCCTTGGTCTTCT 58.913 41.667 0.00 0.00 0.00 2.85
143 144 5.407407 TCTTACTCACATCCTTGGTCTTC 57.593 43.478 0.00 0.00 0.00 2.87
144 145 5.513267 GGTTCTTACTCACATCCTTGGTCTT 60.513 44.000 0.00 0.00 0.00 3.01
145 146 4.020128 GGTTCTTACTCACATCCTTGGTCT 60.020 45.833 0.00 0.00 0.00 3.85
146 147 4.254492 GGTTCTTACTCACATCCTTGGTC 58.746 47.826 0.00 0.00 0.00 4.02
147 148 3.650942 TGGTTCTTACTCACATCCTTGGT 59.349 43.478 0.00 0.00 0.00 3.67
148 149 4.286297 TGGTTCTTACTCACATCCTTGG 57.714 45.455 0.00 0.00 0.00 3.61
149 150 5.491070 TCATGGTTCTTACTCACATCCTTG 58.509 41.667 0.00 0.00 0.00 3.61
150 151 5.762179 TCATGGTTCTTACTCACATCCTT 57.238 39.130 0.00 0.00 0.00 3.36
151 152 5.426509 TCATCATGGTTCTTACTCACATCCT 59.573 40.000 0.00 0.00 0.00 3.24
152 153 5.674525 TCATCATGGTTCTTACTCACATCC 58.325 41.667 0.00 0.00 0.00 3.51
153 154 5.236047 GCTCATCATGGTTCTTACTCACATC 59.764 44.000 0.00 0.00 0.00 3.06
154 155 5.121811 GCTCATCATGGTTCTTACTCACAT 58.878 41.667 0.00 0.00 0.00 3.21
155 156 4.020307 TGCTCATCATGGTTCTTACTCACA 60.020 41.667 0.00 0.00 0.00 3.58
156 157 4.507710 TGCTCATCATGGTTCTTACTCAC 58.492 43.478 0.00 0.00 0.00 3.51
157 158 4.824479 TGCTCATCATGGTTCTTACTCA 57.176 40.909 0.00 0.00 0.00 3.41
158 159 7.658982 TCAATATGCTCATCATGGTTCTTACTC 59.341 37.037 0.00 0.00 36.63 2.59
159 160 7.512130 TCAATATGCTCATCATGGTTCTTACT 58.488 34.615 0.00 0.00 36.63 2.24
160 161 7.094890 CCTCAATATGCTCATCATGGTTCTTAC 60.095 40.741 0.00 0.00 36.63 2.34
161 162 6.938596 CCTCAATATGCTCATCATGGTTCTTA 59.061 38.462 0.00 0.00 36.63 2.10
162 163 5.768662 CCTCAATATGCTCATCATGGTTCTT 59.231 40.000 0.00 0.00 36.63 2.52
163 164 5.072736 TCCTCAATATGCTCATCATGGTTCT 59.927 40.000 0.00 0.00 36.63 3.01
164 165 5.180868 GTCCTCAATATGCTCATCATGGTTC 59.819 44.000 0.00 0.00 36.63 3.62
165 166 5.068636 GTCCTCAATATGCTCATCATGGTT 58.931 41.667 0.00 0.00 36.63 3.67
166 167 4.649692 GTCCTCAATATGCTCATCATGGT 58.350 43.478 0.00 0.00 36.63 3.55
167 168 3.683340 CGTCCTCAATATGCTCATCATGG 59.317 47.826 0.00 0.00 36.63 3.66
168 169 4.151867 CACGTCCTCAATATGCTCATCATG 59.848 45.833 0.00 0.00 36.63 3.07
169 170 4.313282 CACGTCCTCAATATGCTCATCAT 58.687 43.478 0.00 0.00 39.17 2.45
170 171 3.493176 CCACGTCCTCAATATGCTCATCA 60.493 47.826 0.00 0.00 0.00 3.07
171 172 3.062763 CCACGTCCTCAATATGCTCATC 58.937 50.000 0.00 0.00 0.00 2.92
172 173 2.224378 CCCACGTCCTCAATATGCTCAT 60.224 50.000 0.00 0.00 0.00 2.90
173 174 1.138859 CCCACGTCCTCAATATGCTCA 59.861 52.381 0.00 0.00 0.00 4.26
174 175 1.871080 CCCACGTCCTCAATATGCTC 58.129 55.000 0.00 0.00 0.00 4.26
175 176 0.179045 GCCCACGTCCTCAATATGCT 60.179 55.000 0.00 0.00 0.00 3.79
176 177 0.463654 TGCCCACGTCCTCAATATGC 60.464 55.000 0.00 0.00 0.00 3.14
177 178 2.260844 ATGCCCACGTCCTCAATATG 57.739 50.000 0.00 0.00 0.00 1.78
178 179 2.289694 GCTATGCCCACGTCCTCAATAT 60.290 50.000 0.00 0.00 0.00 1.28
179 180 1.070134 GCTATGCCCACGTCCTCAATA 59.930 52.381 0.00 0.00 0.00 1.90
180 181 0.179045 GCTATGCCCACGTCCTCAAT 60.179 55.000 0.00 0.00 0.00 2.57
181 182 1.220749 GCTATGCCCACGTCCTCAA 59.779 57.895 0.00 0.00 0.00 3.02
182 183 2.731571 GGCTATGCCCACGTCCTCA 61.732 63.158 0.00 0.00 44.06 3.86
183 184 2.109181 GGCTATGCCCACGTCCTC 59.891 66.667 0.00 0.00 44.06 3.71
193 194 3.924507 CCAACCACTGGGCTATGC 58.075 61.111 0.00 0.00 42.17 3.14
204 205 3.598747 AATCATGCGCCCCCAACCA 62.599 57.895 4.18 0.00 0.00 3.67
205 206 2.759560 AATCATGCGCCCCCAACC 60.760 61.111 4.18 0.00 0.00 3.77
206 207 1.034838 TACAATCATGCGCCCCCAAC 61.035 55.000 4.18 0.00 0.00 3.77
207 208 0.323816 TTACAATCATGCGCCCCCAA 60.324 50.000 4.18 0.00 0.00 4.12
208 209 0.323816 TTTACAATCATGCGCCCCCA 60.324 50.000 4.18 0.00 0.00 4.96
209 210 0.102300 GTTTACAATCATGCGCCCCC 59.898 55.000 4.18 0.00 0.00 5.40
210 211 0.102300 GGTTTACAATCATGCGCCCC 59.898 55.000 4.18 0.00 0.00 5.80
211 212 1.102978 AGGTTTACAATCATGCGCCC 58.897 50.000 4.18 0.00 0.00 6.13
212 213 3.691498 GTTAGGTTTACAATCATGCGCC 58.309 45.455 4.18 0.00 0.00 6.53
213 214 3.062909 TCGTTAGGTTTACAATCATGCGC 59.937 43.478 0.00 0.00 0.00 6.09
214 215 4.493545 GGTCGTTAGGTTTACAATCATGCG 60.494 45.833 0.00 0.00 0.00 4.73
215 216 4.393680 TGGTCGTTAGGTTTACAATCATGC 59.606 41.667 0.00 0.00 0.00 4.06
216 217 5.872617 TCTGGTCGTTAGGTTTACAATCATG 59.127 40.000 0.00 0.00 0.00 3.07
217 218 6.045072 TCTGGTCGTTAGGTTTACAATCAT 57.955 37.500 0.00 0.00 0.00 2.45
218 219 5.011329 ACTCTGGTCGTTAGGTTTACAATCA 59.989 40.000 0.00 0.00 0.00 2.57
219 220 5.476614 ACTCTGGTCGTTAGGTTTACAATC 58.523 41.667 0.00 0.00 0.00 2.67
220 221 5.479124 ACTCTGGTCGTTAGGTTTACAAT 57.521 39.130 0.00 0.00 0.00 2.71
221 222 4.942761 ACTCTGGTCGTTAGGTTTACAA 57.057 40.909 0.00 0.00 0.00 2.41
222 223 4.557296 CGAACTCTGGTCGTTAGGTTTACA 60.557 45.833 0.00 0.00 0.00 2.41
223 224 3.916776 CGAACTCTGGTCGTTAGGTTTAC 59.083 47.826 0.00 0.00 0.00 2.01
224 225 3.820467 TCGAACTCTGGTCGTTAGGTTTA 59.180 43.478 4.93 0.00 0.00 2.01
225 226 2.624838 TCGAACTCTGGTCGTTAGGTTT 59.375 45.455 4.93 0.00 0.00 3.27
226 227 2.233271 TCGAACTCTGGTCGTTAGGTT 58.767 47.619 4.93 0.00 0.00 3.50
227 228 1.901591 TCGAACTCTGGTCGTTAGGT 58.098 50.000 4.93 0.00 0.00 3.08
228 229 2.223525 GGATCGAACTCTGGTCGTTAGG 60.224 54.545 4.93 0.00 0.00 2.69
229 230 2.422479 TGGATCGAACTCTGGTCGTTAG 59.578 50.000 4.93 0.00 0.00 2.34
230 231 2.163010 GTGGATCGAACTCTGGTCGTTA 59.837 50.000 4.93 0.00 0.00 3.18
231 232 1.067776 GTGGATCGAACTCTGGTCGTT 60.068 52.381 4.93 0.00 0.00 3.85
232 233 0.526662 GTGGATCGAACTCTGGTCGT 59.473 55.000 4.93 0.00 0.00 4.34
233 234 0.523546 CGTGGATCGAACTCTGGTCG 60.524 60.000 0.00 0.00 42.86 4.79
234 235 0.526662 ACGTGGATCGAACTCTGGTC 59.473 55.000 0.00 0.00 42.86 4.02
235 236 0.526662 GACGTGGATCGAACTCTGGT 59.473 55.000 0.00 0.00 42.86 4.00
236 237 0.523546 CGACGTGGATCGAACTCTGG 60.524 60.000 0.00 0.00 45.13 3.86
237 238 0.523546 CCGACGTGGATCGAACTCTG 60.524 60.000 0.00 0.00 45.13 3.35
238 239 1.654954 CCCGACGTGGATCGAACTCT 61.655 60.000 0.00 0.00 45.13 3.24
239 240 1.226603 CCCGACGTGGATCGAACTC 60.227 63.158 0.00 0.00 45.13 3.01
240 241 2.707849 CCCCGACGTGGATCGAACT 61.708 63.158 0.00 0.00 45.13 3.01
241 242 2.202703 CCCCGACGTGGATCGAAC 60.203 66.667 0.00 0.00 45.13 3.95
242 243 2.361483 TCCCCGACGTGGATCGAA 60.361 61.111 0.00 0.00 45.13 3.71
243 244 3.136123 GTCCCCGACGTGGATCGA 61.136 66.667 1.39 0.00 45.13 3.59
252 253 0.248289 TCCAGAAATTCGTCCCCGAC 59.752 55.000 0.00 0.00 44.13 4.79
253 254 0.978151 TTCCAGAAATTCGTCCCCGA 59.022 50.000 0.00 0.00 42.41 5.14
254 255 2.038387 ATTCCAGAAATTCGTCCCCG 57.962 50.000 0.00 0.00 0.00 5.73
262 263 6.083487 TCCCTCATGAGAATTCCAGAAATT 57.917 37.500 24.62 0.00 40.34 1.82
263 264 5.722172 TCCCTCATGAGAATTCCAGAAAT 57.278 39.130 24.62 0.00 0.00 2.17
264 265 5.443283 CATCCCTCATGAGAATTCCAGAAA 58.557 41.667 24.62 0.00 33.80 2.52
265 266 4.688045 GCATCCCTCATGAGAATTCCAGAA 60.688 45.833 24.62 0.00 33.80 3.02
266 267 3.181447 GCATCCCTCATGAGAATTCCAGA 60.181 47.826 24.62 8.82 33.80 3.86
267 268 3.147629 GCATCCCTCATGAGAATTCCAG 58.852 50.000 24.62 5.13 33.80 3.86
268 269 2.781757 AGCATCCCTCATGAGAATTCCA 59.218 45.455 24.62 0.28 33.80 3.53
269 270 3.505480 AGCATCCCTCATGAGAATTCC 57.495 47.619 24.62 9.10 33.80 3.01
270 271 4.716794 AGAAGCATCCCTCATGAGAATTC 58.283 43.478 24.62 15.91 33.80 2.17
271 272 4.792513 AGAAGCATCCCTCATGAGAATT 57.207 40.909 24.62 8.69 33.80 2.17
272 273 4.412858 AGAAGAAGCATCCCTCATGAGAAT 59.587 41.667 24.62 13.73 33.80 2.40
273 274 3.779183 AGAAGAAGCATCCCTCATGAGAA 59.221 43.478 24.62 11.97 33.80 2.87
274 275 3.382278 AGAAGAAGCATCCCTCATGAGA 58.618 45.455 24.62 5.64 33.80 3.27
275 276 3.842007 AGAAGAAGCATCCCTCATGAG 57.158 47.619 16.24 16.24 33.80 2.90
276 277 6.727697 TGATATAGAAGAAGCATCCCTCATGA 59.272 38.462 0.00 0.00 33.80 3.07
277 278 6.944096 TGATATAGAAGAAGCATCCCTCATG 58.056 40.000 0.00 0.00 35.29 3.07
278 279 7.565190 TTGATATAGAAGAAGCATCCCTCAT 57.435 36.000 0.00 0.00 0.00 2.90
279 280 7.565190 ATTGATATAGAAGAAGCATCCCTCA 57.435 36.000 0.00 0.00 0.00 3.86
280 281 9.950496 TTTATTGATATAGAAGAAGCATCCCTC 57.050 33.333 0.00 0.00 0.00 4.30
281 282 9.732130 GTTTATTGATATAGAAGAAGCATCCCT 57.268 33.333 0.00 0.00 0.00 4.20
282 283 8.951243 GGTTTATTGATATAGAAGAAGCATCCC 58.049 37.037 0.00 0.00 0.00 3.85
283 284 8.660373 CGGTTTATTGATATAGAAGAAGCATCC 58.340 37.037 0.00 0.00 0.00 3.51
284 285 9.209175 ACGGTTTATTGATATAGAAGAAGCATC 57.791 33.333 0.00 0.00 0.00 3.91
285 286 8.993121 CACGGTTTATTGATATAGAAGAAGCAT 58.007 33.333 0.00 0.00 0.00 3.79
286 287 7.441157 CCACGGTTTATTGATATAGAAGAAGCA 59.559 37.037 0.00 0.00 0.00 3.91
287 288 7.095187 CCCACGGTTTATTGATATAGAAGAAGC 60.095 40.741 0.00 0.00 0.00 3.86
288 289 7.931948 ACCCACGGTTTATTGATATAGAAGAAG 59.068 37.037 0.00 0.00 27.29 2.85
289 290 7.713507 CACCCACGGTTTATTGATATAGAAGAA 59.286 37.037 0.00 0.00 31.02 2.52
290 291 7.214381 CACCCACGGTTTATTGATATAGAAGA 58.786 38.462 0.00 0.00 31.02 2.87
291 292 6.073222 GCACCCACGGTTTATTGATATAGAAG 60.073 42.308 0.00 0.00 31.02 2.85
292 293 5.761234 GCACCCACGGTTTATTGATATAGAA 59.239 40.000 0.00 0.00 31.02 2.10
293 294 5.071250 AGCACCCACGGTTTATTGATATAGA 59.929 40.000 0.00 0.00 31.02 1.98
294 295 5.305585 AGCACCCACGGTTTATTGATATAG 58.694 41.667 0.00 0.00 31.02 1.31
295 296 5.298989 AGCACCCACGGTTTATTGATATA 57.701 39.130 0.00 0.00 31.02 0.86
296 297 4.164843 AGCACCCACGGTTTATTGATAT 57.835 40.909 0.00 0.00 31.02 1.63
297 298 3.637911 AGCACCCACGGTTTATTGATA 57.362 42.857 0.00 0.00 31.02 2.15
298 299 2.507407 AGCACCCACGGTTTATTGAT 57.493 45.000 0.00 0.00 31.02 2.57
299 300 2.303600 ACTAGCACCCACGGTTTATTGA 59.696 45.455 0.00 0.00 31.02 2.57
300 301 2.418628 CACTAGCACCCACGGTTTATTG 59.581 50.000 0.00 0.00 31.02 1.90
301 302 2.706890 CACTAGCACCCACGGTTTATT 58.293 47.619 0.00 0.00 31.02 1.40
302 303 1.677820 GCACTAGCACCCACGGTTTAT 60.678 52.381 0.00 0.00 41.58 1.40
303 304 0.320946 GCACTAGCACCCACGGTTTA 60.321 55.000 0.00 0.00 41.58 2.01
304 305 1.599797 GCACTAGCACCCACGGTTT 60.600 57.895 0.00 0.00 41.58 3.27
305 306 2.032071 GCACTAGCACCCACGGTT 59.968 61.111 0.00 0.00 41.58 4.44
306 307 4.016706 GGCACTAGCACCCACGGT 62.017 66.667 0.00 0.00 44.61 4.83
307 308 2.355986 TAGGCACTAGCACCCACGG 61.356 63.158 0.00 0.00 44.61 4.94
308 309 3.294750 TAGGCACTAGCACCCACG 58.705 61.111 0.00 0.00 44.61 4.94
562 584 1.722851 TCCCTGTAAACCTCCTCCTCT 59.277 52.381 0.00 0.00 0.00 3.69
563 585 2.112190 CTCCCTGTAAACCTCCTCCTC 58.888 57.143 0.00 0.00 0.00 3.71
564 586 1.273896 CCTCCCTGTAAACCTCCTCCT 60.274 57.143 0.00 0.00 0.00 3.69
565 587 1.205055 CCTCCCTGTAAACCTCCTCC 58.795 60.000 0.00 0.00 0.00 4.30
566 588 2.249309 TCCTCCCTGTAAACCTCCTC 57.751 55.000 0.00 0.00 0.00 3.71
567 589 2.113777 TCTTCCTCCCTGTAAACCTCCT 59.886 50.000 0.00 0.00 0.00 3.69
655 677 3.954904 GGTGCTAGAGGTGATTACTCTGA 59.045 47.826 5.29 0.00 44.57 3.27
675 721 3.254024 ATGCGAGCGAAACAGGGGT 62.254 57.895 0.00 0.00 0.00 4.95
743 829 1.012841 GTGCCATCAGTAGAGCAAGC 58.987 55.000 0.00 0.00 36.91 4.01
759 845 0.889994 TGGATGAGGTGCATTTGTGC 59.110 50.000 0.00 0.00 37.34 4.57
781 867 8.499162 CCCTGAAATGACTGATCGTAATTAATC 58.501 37.037 0.00 0.00 0.00 1.75
824 910 5.769662 ACATTGGACACAGTTAATGACATGT 59.230 36.000 0.00 0.00 35.21 3.21
880 1055 9.494271 CATGCTAAATAAAGCTGGTTAGATAGA 57.506 33.333 9.12 0.00 43.19 1.98
1050 3457 2.463876 CGAACGCTGAAGATCTGCATA 58.536 47.619 3.12 0.00 40.74 3.14
1169 3576 1.819632 CAGTTATCCCTGGTGCGGC 60.820 63.158 0.00 0.00 0.00 6.53
1208 3615 1.068333 ACAAATGATGCACGGTGCTTC 60.068 47.619 30.93 30.93 45.31 3.86
1695 5928 1.194781 GCACCTCTCCTTCCCTCACA 61.195 60.000 0.00 0.00 0.00 3.58
1882 6121 3.334751 CGCAACAACGACGGCAGA 61.335 61.111 0.00 0.00 34.06 4.26
2058 6312 4.576463 ACAGGAACACAAAGAACACTCATC 59.424 41.667 0.00 0.00 0.00 2.92
2096 6350 3.365265 CCGTTCCAGTGCTTGCCC 61.365 66.667 0.00 0.00 0.00 5.36
2133 6389 5.489792 AGATCAACTCTCAAACAAGGCTA 57.510 39.130 0.00 0.00 0.00 3.93
2297 6644 3.319122 AGGTTTTACTTCTTGCAAGCCAG 59.681 43.478 21.99 20.14 0.00 4.85
2361 7713 6.072286 ACACAAGGCAGAATTCTTCATGTTAG 60.072 38.462 4.86 2.88 0.00 2.34
2461 7893 1.195448 CGACACATGTGCTTTGTCTCC 59.805 52.381 25.68 3.31 37.99 3.71
2506 7938 2.307934 ATGTTGTGCCGCAAAACTTT 57.692 40.000 23.74 11.18 39.03 2.66
2518 7950 6.073058 ACGCAATGCTAGGATATTATGTTGTG 60.073 38.462 2.94 0.44 0.00 3.33
2560 7993 1.271856 TTGCCTCATCTTACGGTCCA 58.728 50.000 0.00 0.00 0.00 4.02
2561 7994 2.622064 ATTGCCTCATCTTACGGTCC 57.378 50.000 0.00 0.00 0.00 4.46
2603 8038 2.816777 ATCTTTCTGGCCTTTCCTCC 57.183 50.000 3.32 0.00 35.26 4.30
2610 8045 2.811410 TGATGCAAATCTTTCTGGCCT 58.189 42.857 3.32 0.00 0.00 5.19
2672 8111 1.000052 GATAGCGGGGAACTAGACTGC 60.000 57.143 0.00 0.42 36.77 4.40
2743 8364 7.471721 CGATAGTCTCTATGATTCTCATGACC 58.528 42.308 0.00 0.00 37.70 4.02
2744 8365 6.966632 GCGATAGTCTCTATGATTCTCATGAC 59.033 42.308 0.00 0.14 36.56 3.06
2745 8366 6.656693 TGCGATAGTCTCTATGATTCTCATGA 59.343 38.462 0.00 0.00 36.56 3.07
2746 8367 6.850555 TGCGATAGTCTCTATGATTCTCATG 58.149 40.000 0.00 0.00 36.56 3.07
2747 8368 7.643569 ATGCGATAGTCTCTATGATTCTCAT 57.356 36.000 0.00 0.00 38.62 2.90
2748 8369 8.567285 TTATGCGATAGTCTCTATGATTCTCA 57.433 34.615 0.00 0.00 39.35 3.27
2749 8370 8.673711 ACTTATGCGATAGTCTCTATGATTCTC 58.326 37.037 0.00 0.00 39.35 2.87
2750 8371 8.574251 ACTTATGCGATAGTCTCTATGATTCT 57.426 34.615 0.00 0.00 39.35 2.40
2771 8392 7.670605 ATGCAGGTATCTTGTAACCTACTTA 57.329 36.000 0.00 0.00 44.43 2.24
2772 8393 6.561519 ATGCAGGTATCTTGTAACCTACTT 57.438 37.500 0.00 0.00 44.43 2.24
2773 8394 7.671302 CATATGCAGGTATCTTGTAACCTACT 58.329 38.462 0.00 0.00 44.43 2.57
2774 8395 6.369065 GCATATGCAGGTATCTTGTAACCTAC 59.631 42.308 22.84 0.00 44.43 3.18
2775 8396 6.464222 GCATATGCAGGTATCTTGTAACCTA 58.536 40.000 22.84 0.00 44.43 3.08
2808 8433 5.554437 ATGCAGAGAAGATGATGATGAGT 57.446 39.130 0.00 0.00 0.00 3.41
2843 8471 0.253327 GGCCGGGAACTCTCAAAGAT 59.747 55.000 2.18 0.00 0.00 2.40
2972 8609 9.738832 CACATGAGCATGATCAACAATTAATTA 57.261 29.630 18.91 0.00 41.20 1.40
2973 8610 8.255206 ACACATGAGCATGATCAACAATTAATT 58.745 29.630 18.91 0.00 41.20 1.40
2974 8611 7.778083 ACACATGAGCATGATCAACAATTAAT 58.222 30.769 18.91 0.00 41.20 1.40
2975 8612 7.160547 ACACATGAGCATGATCAACAATTAA 57.839 32.000 18.91 0.00 41.20 1.40
2976 8613 6.762702 ACACATGAGCATGATCAACAATTA 57.237 33.333 18.91 0.00 41.20 1.40
2977 8614 5.654603 ACACATGAGCATGATCAACAATT 57.345 34.783 18.91 0.00 41.20 2.32
2978 8615 5.184287 TCAACACATGAGCATGATCAACAAT 59.816 36.000 18.91 0.00 41.20 2.71
2979 8616 4.519730 TCAACACATGAGCATGATCAACAA 59.480 37.500 18.91 0.00 41.20 2.83
2980 8617 4.073549 TCAACACATGAGCATGATCAACA 58.926 39.130 18.91 0.00 41.20 3.33
2981 8618 4.690184 TCAACACATGAGCATGATCAAC 57.310 40.909 18.91 0.00 41.20 3.18
2982 8619 4.439563 GCATCAACACATGAGCATGATCAA 60.440 41.667 18.91 0.00 42.53 2.57
2983 8620 3.066203 GCATCAACACATGAGCATGATCA 59.934 43.478 17.22 17.22 42.53 2.92
2984 8621 3.066203 TGCATCAACACATGAGCATGATC 59.934 43.478 16.70 3.40 42.53 2.92
2985 8622 3.020984 TGCATCAACACATGAGCATGAT 58.979 40.909 16.70 2.90 42.53 2.45
2986 8623 2.438411 TGCATCAACACATGAGCATGA 58.562 42.857 16.70 0.24 42.53 3.07
2987 8624 2.931512 TGCATCAACACATGAGCATG 57.068 45.000 8.82 8.82 42.53 4.06
2988 8625 2.758423 ACATGCATCAACACATGAGCAT 59.242 40.909 9.77 0.00 45.49 3.79
2989 8626 2.164338 ACATGCATCAACACATGAGCA 58.836 42.857 9.77 0.00 45.23 4.26
2990 8627 2.933495 ACATGCATCAACACATGAGC 57.067 45.000 9.77 0.00 45.23 4.26
2991 8628 4.619760 GTCAAACATGCATCAACACATGAG 59.380 41.667 9.77 0.00 45.23 2.90
2992 8629 4.278919 AGTCAAACATGCATCAACACATGA 59.721 37.500 9.77 0.00 45.23 3.07
2994 8631 4.321452 GGAGTCAAACATGCATCAACACAT 60.321 41.667 0.00 0.00 0.00 3.21
2995 8632 3.004629 GGAGTCAAACATGCATCAACACA 59.995 43.478 0.00 0.00 0.00 3.72
2996 8633 3.254166 AGGAGTCAAACATGCATCAACAC 59.746 43.478 0.00 0.00 0.00 3.32
2997 8634 3.253921 CAGGAGTCAAACATGCATCAACA 59.746 43.478 0.00 0.00 0.00 3.33
2998 8635 3.829948 CAGGAGTCAAACATGCATCAAC 58.170 45.455 0.00 0.00 0.00 3.18
2999 8636 2.229543 GCAGGAGTCAAACATGCATCAA 59.770 45.455 0.00 0.00 43.12 2.57
3000 8637 1.814394 GCAGGAGTCAAACATGCATCA 59.186 47.619 0.00 0.00 43.12 3.07
3001 8638 1.133790 GGCAGGAGTCAAACATGCATC 59.866 52.381 0.00 0.00 44.96 3.91
3002 8639 1.180029 GGCAGGAGTCAAACATGCAT 58.820 50.000 0.00 0.00 44.96 3.96
3003 8640 0.178995 TGGCAGGAGTCAAACATGCA 60.179 50.000 0.00 0.00 44.96 3.96
3004 8641 1.135199 CATGGCAGGAGTCAAACATGC 60.135 52.381 0.00 0.00 42.94 4.06
3005 8642 2.094906 CACATGGCAGGAGTCAAACATG 60.095 50.000 5.99 12.09 40.94 3.21
3006 8643 2.165167 CACATGGCAGGAGTCAAACAT 58.835 47.619 5.99 0.00 30.06 2.71
3007 8644 1.142667 TCACATGGCAGGAGTCAAACA 59.857 47.619 5.99 0.00 30.06 2.83
3008 8645 1.808945 CTCACATGGCAGGAGTCAAAC 59.191 52.381 5.99 0.00 30.06 2.93
3009 8646 1.883638 GCTCACATGGCAGGAGTCAAA 60.884 52.381 5.99 0.00 30.06 2.69
3010 8647 0.321919 GCTCACATGGCAGGAGTCAA 60.322 55.000 5.99 0.00 30.06 3.18
3011 8648 1.297689 GCTCACATGGCAGGAGTCA 59.702 57.895 5.99 0.00 0.00 3.41
3012 8649 1.451028 GGCTCACATGGCAGGAGTC 60.451 63.158 5.99 4.18 0.00 3.36
3013 8650 1.922369 AGGCTCACATGGCAGGAGT 60.922 57.895 5.99 0.00 34.73 3.85
3014 8651 1.451567 CAGGCTCACATGGCAGGAG 60.452 63.158 5.99 7.70 34.73 3.69
3015 8652 1.276859 ATCAGGCTCACATGGCAGGA 61.277 55.000 5.99 0.00 34.73 3.86
3016 8653 1.101635 CATCAGGCTCACATGGCAGG 61.102 60.000 0.00 0.00 34.73 4.85
3017 8654 0.393944 ACATCAGGCTCACATGGCAG 60.394 55.000 0.00 0.00 34.73 4.85
3018 8655 0.911053 TACATCAGGCTCACATGGCA 59.089 50.000 0.00 0.00 34.73 4.92
3019 8656 2.042686 TTACATCAGGCTCACATGGC 57.957 50.000 0.00 0.00 0.00 4.40
3020 8657 2.947652 CCTTTACATCAGGCTCACATGG 59.052 50.000 0.00 0.00 0.00 3.66
3021 8658 3.614092 ACCTTTACATCAGGCTCACATG 58.386 45.455 0.00 0.00 34.32 3.21
3022 8659 4.225042 TGTACCTTTACATCAGGCTCACAT 59.775 41.667 0.00 0.00 32.98 3.21
3023 8660 3.580895 TGTACCTTTACATCAGGCTCACA 59.419 43.478 0.00 0.00 32.98 3.58
3024 8661 4.202245 TGTACCTTTACATCAGGCTCAC 57.798 45.455 0.00 0.00 32.98 3.51
3025 8662 4.769688 CATGTACCTTTACATCAGGCTCA 58.230 43.478 0.00 0.00 44.30 4.26
3026 8663 3.561725 GCATGTACCTTTACATCAGGCTC 59.438 47.826 0.00 0.00 44.30 4.70
3027 8664 3.054434 TGCATGTACCTTTACATCAGGCT 60.054 43.478 0.00 0.00 44.30 4.58
3028 8665 3.065371 GTGCATGTACCTTTACATCAGGC 59.935 47.826 1.96 0.00 44.30 4.85
3029 8666 4.260985 TGTGCATGTACCTTTACATCAGG 58.739 43.478 11.66 0.00 44.30 3.86
3030 8667 5.813717 CATGTGCATGTACCTTTACATCAG 58.186 41.667 11.66 0.00 44.30 2.90
3031 8668 5.816449 CATGTGCATGTACCTTTACATCA 57.184 39.130 11.66 0.00 44.30 3.07
3049 8686 1.532437 CTCACACAATGCACGACATGT 59.468 47.619 0.00 0.00 39.60 3.21
3050 8687 1.799994 TCTCACACAATGCACGACATG 59.200 47.619 0.00 0.00 39.60 3.21
3051 8688 2.071540 CTCTCACACAATGCACGACAT 58.928 47.619 0.00 0.00 42.30 3.06
3052 8689 1.501169 CTCTCACACAATGCACGACA 58.499 50.000 0.00 0.00 0.00 4.35
3053 8690 0.792640 CCTCTCACACAATGCACGAC 59.207 55.000 0.00 0.00 0.00 4.34
3054 8691 0.678950 TCCTCTCACACAATGCACGA 59.321 50.000 0.00 0.00 0.00 4.35
3055 8692 0.792640 GTCCTCTCACACAATGCACG 59.207 55.000 0.00 0.00 0.00 5.34
3056 8693 1.882912 TGTCCTCTCACACAATGCAC 58.117 50.000 0.00 0.00 0.00 4.57
3057 8694 2.429478 CATGTCCTCTCACACAATGCA 58.571 47.619 0.00 0.00 0.00 3.96
3058 8695 1.131883 GCATGTCCTCTCACACAATGC 59.868 52.381 0.00 0.00 0.00 3.56
3059 8696 1.741706 GGCATGTCCTCTCACACAATG 59.258 52.381 0.00 0.00 0.00 2.82
3060 8697 1.352017 TGGCATGTCCTCTCACACAAT 59.648 47.619 0.00 0.00 35.26 2.71
3061 8698 0.764271 TGGCATGTCCTCTCACACAA 59.236 50.000 0.00 0.00 35.26 3.33
3062 8699 0.035317 GTGGCATGTCCTCTCACACA 59.965 55.000 0.00 0.00 35.26 3.72
3063 8700 0.322975 AGTGGCATGTCCTCTCACAC 59.677 55.000 0.00 0.00 33.60 3.82
3064 8701 0.322648 CAGTGGCATGTCCTCTCACA 59.677 55.000 0.00 0.00 36.59 3.58
3065 8702 0.322975 ACAGTGGCATGTCCTCTCAC 59.677 55.000 0.00 0.00 36.59 3.51
3066 8703 0.322648 CACAGTGGCATGTCCTCTCA 59.677 55.000 0.00 0.00 36.59 3.27
3067 8704 3.149899 CACAGTGGCATGTCCTCTC 57.850 57.895 0.00 0.00 36.59 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.