Multiple sequence alignment - TraesCS6A01G417200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G417200 chr6A 100.000 3707 0 0 1 3707 615709657 615705951 0.000000e+00 6846
1 TraesCS6A01G417200 chr6D 94.232 1907 59 16 833 2725 470886477 470884608 0.000000e+00 2865
2 TraesCS6A01G417200 chr6D 87.738 367 27 8 2740 3101 470884559 470884206 2.660000e-111 412
3 TraesCS6A01G417200 chr6B 91.560 1955 113 23 796 2725 719900154 719902081 0.000000e+00 2649
4 TraesCS6A01G417200 chr6B 88.959 634 60 7 45 672 719895077 719895706 0.000000e+00 774
5 TraesCS6A01G417200 chr6B 94.828 290 12 3 3365 3651 719902416 719902705 2.030000e-122 449
6 TraesCS6A01G417200 chr6B 92.058 277 14 4 2743 3011 719902145 719902421 2.090000e-102 383
7 TraesCS6A01G417200 chr5B 83.607 183 28 1 156 336 71800138 71800320 1.770000e-38 171
8 TraesCS6A01G417200 chr5B 77.489 231 28 13 517 745 71800563 71800771 2.340000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G417200 chr6A 615705951 615709657 3706 True 6846.000000 6846 100.000000 1 3707 1 chr6A.!!$R1 3706
1 TraesCS6A01G417200 chr6D 470884206 470886477 2271 True 1638.500000 2865 90.985000 833 3101 2 chr6D.!!$R1 2268
2 TraesCS6A01G417200 chr6B 719900154 719902705 2551 False 1160.333333 2649 92.815333 796 3651 3 chr6B.!!$F2 2855
3 TraesCS6A01G417200 chr6B 719895077 719895706 629 False 774.000000 774 88.959000 45 672 1 chr6B.!!$F1 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
766 773 0.249615 CACGCTGATCGATGGGTGAT 60.250 55.0 21.35 3.36 45.84 3.06 F
1122 1134 0.103208 GCGACTGGATGGAAGACGAT 59.897 55.0 0.00 0.00 35.33 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2490 2505 0.107017 ACTTGTGCAGTTGCTCCAGT 60.107 50.0 5.62 6.4 42.66 4.00 R
2984 3067 0.955919 GTGGCTCAAAGGAGGAACCG 60.956 60.0 0.00 0.0 44.74 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.069289 CAATCTTGCCTTTCCTTTTGCC 58.931 45.455 0.00 0.00 0.00 4.52
23 24 1.786937 TCTTGCCTTTCCTTTTGCCA 58.213 45.000 0.00 0.00 0.00 4.92
24 25 2.328319 TCTTGCCTTTCCTTTTGCCAT 58.672 42.857 0.00 0.00 0.00 4.40
25 26 2.037511 TCTTGCCTTTCCTTTTGCCATG 59.962 45.455 0.00 0.00 0.00 3.66
26 27 1.422531 TGCCTTTCCTTTTGCCATGT 58.577 45.000 0.00 0.00 0.00 3.21
27 28 1.344114 TGCCTTTCCTTTTGCCATGTC 59.656 47.619 0.00 0.00 0.00 3.06
28 29 1.344114 GCCTTTCCTTTTGCCATGTCA 59.656 47.619 0.00 0.00 0.00 3.58
29 30 2.224257 GCCTTTCCTTTTGCCATGTCAA 60.224 45.455 0.00 0.00 0.00 3.18
30 31 3.743899 GCCTTTCCTTTTGCCATGTCAAA 60.744 43.478 0.00 0.00 34.47 2.69
31 32 4.644498 CCTTTCCTTTTGCCATGTCAAAT 58.356 39.130 2.27 0.00 36.04 2.32
32 33 5.065235 CCTTTCCTTTTGCCATGTCAAATT 58.935 37.500 2.27 0.00 36.04 1.82
33 34 5.532032 CCTTTCCTTTTGCCATGTCAAATTT 59.468 36.000 2.27 0.00 36.04 1.82
34 35 6.039605 CCTTTCCTTTTGCCATGTCAAATTTT 59.960 34.615 2.27 0.00 36.04 1.82
35 36 7.228308 CCTTTCCTTTTGCCATGTCAAATTTTA 59.772 33.333 2.27 0.00 36.04 1.52
36 37 7.489574 TTCCTTTTGCCATGTCAAATTTTAC 57.510 32.000 2.27 0.00 36.04 2.01
37 38 6.825610 TCCTTTTGCCATGTCAAATTTTACT 58.174 32.000 2.27 0.00 36.04 2.24
38 39 7.278875 TCCTTTTGCCATGTCAAATTTTACTT 58.721 30.769 2.27 0.00 36.04 2.24
39 40 7.772757 TCCTTTTGCCATGTCAAATTTTACTTT 59.227 29.630 2.27 0.00 36.04 2.66
40 41 9.050601 CCTTTTGCCATGTCAAATTTTACTTTA 57.949 29.630 2.27 0.00 36.04 1.85
75 76 6.821616 ATTTTACCATTATTTCCCATGCCA 57.178 33.333 0.00 0.00 0.00 4.92
77 78 7.921041 TTTTACCATTATTTCCCATGCCATA 57.079 32.000 0.00 0.00 0.00 2.74
82 83 7.814356 ACCATTATTTCCCATGCCATATTTTT 58.186 30.769 0.00 0.00 0.00 1.94
124 125 6.279882 TGCCAACTCAACCTTTTCTATTTTG 58.720 36.000 0.00 0.00 0.00 2.44
131 132 5.306678 TCAACCTTTTCTATTTTGCCATGGT 59.693 36.000 14.67 0.00 0.00 3.55
156 157 9.757227 GTAATTTTACCTTTATATGCATGGCAA 57.243 29.630 10.16 0.00 43.62 4.52
183 184 9.941325 ATTAATTCTTGTTCACATGGCAAATTA 57.059 25.926 0.00 0.00 0.00 1.40
184 185 7.894376 AATTCTTGTTCACATGGCAAATTAG 57.106 32.000 0.00 0.00 0.00 1.73
186 187 4.280425 TCTTGTTCACATGGCAAATTAGCA 59.720 37.500 0.00 0.00 35.83 3.49
195 196 5.010314 ACATGGCAAATTAGCATATGGTCAG 59.990 40.000 11.40 0.00 35.94 3.51
199 200 5.242393 GGCAAATTAGCATATGGTCAGATGT 59.758 40.000 11.40 0.00 32.91 3.06
202 203 7.358066 CAAATTAGCATATGGTCAGATGTCAC 58.642 38.462 11.40 0.00 32.91 3.67
203 204 5.876651 TTAGCATATGGTCAGATGTCACT 57.123 39.130 11.40 0.00 32.91 3.41
248 249 4.134563 AGTCTTTTGTTTCATAGCACGGT 58.865 39.130 0.00 0.00 0.00 4.83
260 261 6.993786 TCATAGCACGGTAAATTCATTTGA 57.006 33.333 0.00 0.00 0.00 2.69
261 262 7.384439 TCATAGCACGGTAAATTCATTTGAA 57.616 32.000 0.00 0.00 38.56 2.69
270 271 6.585702 CGGTAAATTCATTTGAAAGCACATGA 59.414 34.615 0.00 0.00 38.93 3.07
343 344 2.965147 ACCTTGCACCTTTTTGCTATGT 59.035 40.909 0.00 0.00 43.41 2.29
353 354 7.812669 GCACCTTTTTGCTATGTTACATAGTTT 59.187 33.333 26.86 6.39 39.59 2.66
406 408 5.634859 CCAATTTCACAGTCTGTAAATTGCC 59.365 40.000 28.77 0.00 38.37 4.52
453 455 4.839121 TGTTGTGAGGTTACTGACACTTT 58.161 39.130 0.00 0.00 40.60 2.66
600 607 3.818210 TGCATTGTTGTAGAATCGTTGGT 59.182 39.130 0.00 0.00 0.00 3.67
601 608 4.277174 TGCATTGTTGTAGAATCGTTGGTT 59.723 37.500 0.00 0.00 0.00 3.67
614 621 7.091443 AGAATCGTTGGTTTTTGTTGTTGTTA 58.909 30.769 0.00 0.00 0.00 2.41
660 667 7.546250 TTTACATGCCTTTTTATCCCTTTCA 57.454 32.000 0.00 0.00 0.00 2.69
666 673 6.894682 TGCCTTTTTATCCCTTTCAAAAGTT 58.105 32.000 2.09 0.00 35.37 2.66
672 679 1.292546 TCCCTTTCAAAAGTTGGGGGT 59.707 47.619 0.00 0.00 38.43 4.95
673 680 1.416030 CCCTTTCAAAAGTTGGGGGTG 59.584 52.381 2.09 0.00 34.20 4.61
674 681 1.202639 CCTTTCAAAAGTTGGGGGTGC 60.203 52.381 2.09 0.00 34.20 5.01
675 682 1.484240 CTTTCAAAAGTTGGGGGTGCA 59.516 47.619 0.00 0.00 0.00 4.57
676 683 1.118838 TTCAAAAGTTGGGGGTGCAG 58.881 50.000 0.00 0.00 0.00 4.41
677 684 0.260230 TCAAAAGTTGGGGGTGCAGA 59.740 50.000 0.00 0.00 0.00 4.26
678 685 1.118838 CAAAAGTTGGGGGTGCAGAA 58.881 50.000 0.00 0.00 0.00 3.02
679 686 1.693606 CAAAAGTTGGGGGTGCAGAAT 59.306 47.619 0.00 0.00 0.00 2.40
680 687 2.101640 AAAGTTGGGGGTGCAGAATT 57.898 45.000 0.00 0.00 0.00 2.17
681 688 2.101640 AAGTTGGGGGTGCAGAATTT 57.898 45.000 0.00 0.00 0.00 1.82
682 689 2.990740 AGTTGGGGGTGCAGAATTTA 57.009 45.000 0.00 0.00 0.00 1.40
683 690 3.473113 AGTTGGGGGTGCAGAATTTAT 57.527 42.857 0.00 0.00 0.00 1.40
684 691 4.601406 AGTTGGGGGTGCAGAATTTATA 57.399 40.909 0.00 0.00 0.00 0.98
685 692 4.941713 AGTTGGGGGTGCAGAATTTATAA 58.058 39.130 0.00 0.00 0.00 0.98
686 693 5.528337 AGTTGGGGGTGCAGAATTTATAAT 58.472 37.500 0.00 0.00 0.00 1.28
687 694 5.963865 AGTTGGGGGTGCAGAATTTATAATT 59.036 36.000 0.00 0.00 0.00 1.40
688 695 6.443527 AGTTGGGGGTGCAGAATTTATAATTT 59.556 34.615 0.00 0.00 0.00 1.82
689 696 6.232581 TGGGGGTGCAGAATTTATAATTTG 57.767 37.500 0.00 0.00 0.00 2.32
690 697 5.723887 TGGGGGTGCAGAATTTATAATTTGT 59.276 36.000 0.00 0.00 0.00 2.83
691 698 6.897966 TGGGGGTGCAGAATTTATAATTTGTA 59.102 34.615 0.00 0.00 0.00 2.41
692 699 7.400339 TGGGGGTGCAGAATTTATAATTTGTAA 59.600 33.333 0.00 0.00 0.00 2.41
693 700 7.926018 GGGGGTGCAGAATTTATAATTTGTAAG 59.074 37.037 0.00 0.00 0.00 2.34
694 701 8.474831 GGGGTGCAGAATTTATAATTTGTAAGT 58.525 33.333 0.00 0.00 0.00 2.24
695 702 9.869757 GGGTGCAGAATTTATAATTTGTAAGTT 57.130 29.630 0.00 0.00 0.00 2.66
734 741 6.974932 TTTTCTTCTCTGCAGCTAATACTG 57.025 37.500 9.47 0.00 40.80 2.74
735 742 4.662468 TCTTCTCTGCAGCTAATACTGG 57.338 45.455 9.47 0.00 38.16 4.00
736 743 3.386078 TCTTCTCTGCAGCTAATACTGGG 59.614 47.826 9.47 0.00 38.16 4.45
737 744 1.414181 TCTCTGCAGCTAATACTGGGC 59.586 52.381 9.47 0.00 38.16 5.36
738 745 0.469917 TCTGCAGCTAATACTGGGCC 59.530 55.000 9.47 0.00 38.16 5.80
739 746 0.471617 CTGCAGCTAATACTGGGCCT 59.528 55.000 4.53 0.00 38.16 5.19
740 747 0.918983 TGCAGCTAATACTGGGCCTT 59.081 50.000 4.53 0.00 38.16 4.35
741 748 1.284785 TGCAGCTAATACTGGGCCTTT 59.715 47.619 4.53 0.00 38.16 3.11
742 749 2.291540 TGCAGCTAATACTGGGCCTTTT 60.292 45.455 4.53 0.00 38.16 2.27
743 750 2.760650 GCAGCTAATACTGGGCCTTTTT 59.239 45.455 4.53 0.00 38.16 1.94
744 751 3.429410 GCAGCTAATACTGGGCCTTTTTG 60.429 47.826 4.53 0.00 38.16 2.44
745 752 3.763897 CAGCTAATACTGGGCCTTTTTGT 59.236 43.478 4.53 0.00 33.85 2.83
746 753 4.017126 AGCTAATACTGGGCCTTTTTGTC 58.983 43.478 4.53 0.00 0.00 3.18
747 754 3.130516 GCTAATACTGGGCCTTTTTGTCC 59.869 47.826 4.53 0.00 0.00 4.02
748 755 2.990740 ATACTGGGCCTTTTTGTCCA 57.009 45.000 4.53 0.00 0.00 4.02
749 756 1.989706 TACTGGGCCTTTTTGTCCAC 58.010 50.000 4.53 0.00 0.00 4.02
750 757 1.106944 ACTGGGCCTTTTTGTCCACG 61.107 55.000 4.53 0.00 0.00 4.94
751 758 2.338620 GGGCCTTTTTGTCCACGC 59.661 61.111 0.84 0.00 0.00 5.34
752 759 2.200337 GGGCCTTTTTGTCCACGCT 61.200 57.895 0.84 0.00 0.00 5.07
753 760 1.007387 GGCCTTTTTGTCCACGCTG 60.007 57.895 0.00 0.00 0.00 5.18
754 761 1.452145 GGCCTTTTTGTCCACGCTGA 61.452 55.000 0.00 0.00 0.00 4.26
755 762 0.598065 GCCTTTTTGTCCACGCTGAT 59.402 50.000 0.00 0.00 0.00 2.90
756 763 1.401539 GCCTTTTTGTCCACGCTGATC 60.402 52.381 0.00 0.00 0.00 2.92
757 764 1.135972 CCTTTTTGTCCACGCTGATCG 60.136 52.381 0.00 0.00 45.38 3.69
758 765 1.798223 CTTTTTGTCCACGCTGATCGA 59.202 47.619 0.00 0.00 41.67 3.59
759 766 2.093306 TTTTGTCCACGCTGATCGAT 57.907 45.000 0.00 0.00 41.67 3.59
760 767 1.358877 TTTGTCCACGCTGATCGATG 58.641 50.000 0.54 0.00 41.67 3.84
761 768 0.460109 TTGTCCACGCTGATCGATGG 60.460 55.000 0.54 0.00 41.67 3.51
762 769 1.592669 GTCCACGCTGATCGATGGG 60.593 63.158 0.54 0.00 41.67 4.00
763 770 2.058001 TCCACGCTGATCGATGGGT 61.058 57.895 0.54 0.36 41.67 4.51
764 771 1.884464 CCACGCTGATCGATGGGTG 60.884 63.158 19.83 19.83 43.66 4.61
765 772 1.141665 CACGCTGATCGATGGGTGA 59.858 57.895 21.35 0.00 45.84 4.02
766 773 0.249615 CACGCTGATCGATGGGTGAT 60.250 55.000 21.35 3.36 45.84 3.06
767 774 0.465705 ACGCTGATCGATGGGTGATT 59.534 50.000 0.54 0.00 41.67 2.57
768 775 1.143305 CGCTGATCGATGGGTGATTC 58.857 55.000 0.54 0.00 41.67 2.52
769 776 1.517242 GCTGATCGATGGGTGATTCC 58.483 55.000 0.54 0.00 0.00 3.01
770 777 1.202687 GCTGATCGATGGGTGATTCCA 60.203 52.381 0.54 0.00 41.60 3.53
771 778 2.487934 CTGATCGATGGGTGATTCCAC 58.512 52.381 0.54 0.00 39.97 4.02
783 790 4.147219 GTGATTCCACCGAAAGTTCTTG 57.853 45.455 0.00 0.00 37.33 3.02
784 791 3.564225 GTGATTCCACCGAAAGTTCTTGT 59.436 43.478 0.00 0.00 37.33 3.16
785 792 4.036380 GTGATTCCACCGAAAGTTCTTGTT 59.964 41.667 0.00 0.00 37.33 2.83
786 793 4.274950 TGATTCCACCGAAAGTTCTTGTTC 59.725 41.667 0.00 0.00 0.00 3.18
787 794 2.206750 TCCACCGAAAGTTCTTGTTCG 58.793 47.619 0.00 0.00 44.80 3.95
791 798 2.943843 CGAAAGTTCTTGTTCGGTCC 57.056 50.000 0.00 0.00 42.21 4.46
792 799 1.191647 CGAAAGTTCTTGTTCGGTCCG 59.808 52.381 4.39 4.39 42.21 4.79
793 800 2.207590 GAAAGTTCTTGTTCGGTCCGT 58.792 47.619 11.88 0.00 0.00 4.69
794 801 1.861971 AAGTTCTTGTTCGGTCCGTC 58.138 50.000 11.88 6.72 0.00 4.79
811 818 0.527817 GTCAGCTCCGTTATCACCGG 60.528 60.000 0.00 0.00 46.83 5.28
823 830 4.095185 CGTTATCACCGGCCAATAGAAAAA 59.905 41.667 0.00 0.00 0.00 1.94
884 891 5.127491 TGGCGGATATAAAAGGTAGTTTGG 58.873 41.667 0.00 0.00 0.00 3.28
959 966 1.626825 CCCTCCTAAACCCTCGTCAAA 59.373 52.381 0.00 0.00 0.00 2.69
1061 1070 1.462670 CAACAAGAGAGGCGAAAGAGC 59.537 52.381 0.00 0.00 0.00 4.09
1095 1104 1.069973 TGCAACAAGAGACGCGAAATG 60.070 47.619 15.93 6.86 0.00 2.32
1099 1108 0.366871 CAAGAGACGCGAAATGGACG 59.633 55.000 15.93 0.00 0.00 4.79
1100 1109 0.242825 AAGAGACGCGAAATGGACGA 59.757 50.000 15.93 0.00 0.00 4.20
1102 1111 0.731514 GAGACGCGAAATGGACGACA 60.732 55.000 15.93 0.00 0.00 4.35
1103 1112 0.732880 AGACGCGAAATGGACGACAG 60.733 55.000 15.93 0.00 0.00 3.51
1105 1114 2.395690 GCGAAATGGACGACAGCG 59.604 61.111 0.00 0.00 44.79 5.18
1106 1115 2.092291 GCGAAATGGACGACAGCGA 61.092 57.895 0.00 0.00 41.64 4.93
1108 1117 0.732880 CGAAATGGACGACAGCGACT 60.733 55.000 0.00 0.00 41.64 4.18
1109 1118 0.716108 GAAATGGACGACAGCGACTG 59.284 55.000 5.47 5.47 41.64 3.51
1116 1128 1.215382 CGACAGCGACTGGATGGAA 59.785 57.895 10.80 0.00 40.82 3.53
1122 1134 0.103208 GCGACTGGATGGAAGACGAT 59.897 55.000 0.00 0.00 35.33 3.73
1297 1309 3.740128 GATGACACGGCCGGCATCT 62.740 63.158 32.49 17.57 35.46 2.90
1320 1332 3.607661 GTCCTCTCGATCCCGCCC 61.608 72.222 0.00 0.00 35.37 6.13
1551 1566 1.115467 CCTCCCACTTCTACTGCGAT 58.885 55.000 0.00 0.00 0.00 4.58
1978 1993 1.227853 GTCTGCCCAAAGTGTCGGT 60.228 57.895 0.00 0.00 0.00 4.69
2121 2136 3.391382 CCGAGGAGGGACACCACC 61.391 72.222 0.00 0.00 46.85 4.61
2125 2140 3.249189 GGAGGGACACCACCAGCA 61.249 66.667 0.00 0.00 45.87 4.41
2126 2141 2.348998 GAGGGACACCACCAGCAG 59.651 66.667 0.00 0.00 40.13 4.24
2127 2142 3.909086 GAGGGACACCACCAGCAGC 62.909 68.421 0.00 0.00 40.13 5.25
2128 2143 4.269523 GGGACACCACCAGCAGCA 62.270 66.667 0.00 0.00 36.50 4.41
2129 2144 2.203337 GGACACCACCAGCAGCAA 60.203 61.111 0.00 0.00 0.00 3.91
2130 2145 2.263741 GGACACCACCAGCAGCAAG 61.264 63.158 0.00 0.00 0.00 4.01
2131 2146 2.203394 ACACCACCAGCAGCAAGG 60.203 61.111 0.00 0.00 0.00 3.61
2132 2147 3.677648 CACCACCAGCAGCAAGGC 61.678 66.667 3.90 0.00 0.00 4.35
2337 2352 4.980805 GGCGTCAAGGCGGTGACA 62.981 66.667 19.76 0.00 46.90 3.58
2725 2754 3.047857 TGATGAATGATGAGTGCCCCTA 58.952 45.455 0.00 0.00 0.00 3.53
2726 2755 3.181451 TGATGAATGATGAGTGCCCCTAC 60.181 47.826 0.00 0.00 0.00 3.18
2728 2757 2.435805 TGAATGATGAGTGCCCCTACTC 59.564 50.000 0.00 0.00 45.71 2.59
2729 2758 2.485966 ATGATGAGTGCCCCTACTCT 57.514 50.000 7.35 0.00 45.70 3.24
2732 2761 1.834263 GATGAGTGCCCCTACTCTGTT 59.166 52.381 7.35 0.00 45.70 3.16
2733 2762 0.976641 TGAGTGCCCCTACTCTGTTG 59.023 55.000 7.35 0.00 45.70 3.33
2734 2763 0.391793 GAGTGCCCCTACTCTGTTGC 60.392 60.000 0.00 0.00 42.93 4.17
2735 2764 1.741770 GTGCCCCTACTCTGTTGCG 60.742 63.158 0.00 0.00 0.00 4.85
2736 2765 2.214216 TGCCCCTACTCTGTTGCGT 61.214 57.895 0.00 0.00 0.00 5.24
2737 2766 1.741770 GCCCCTACTCTGTTGCGTG 60.742 63.158 0.00 0.00 0.00 5.34
2751 2822 2.438434 CGTGCCCCTGGATGGAAC 60.438 66.667 0.00 0.00 38.35 3.62
2896 2979 3.698040 ACAAGGAATTGCACTCCATCATC 59.302 43.478 14.93 0.00 35.20 2.92
2904 2987 4.508551 TGCACTCCATCATCCACTATTT 57.491 40.909 0.00 0.00 0.00 1.40
3041 3124 6.055588 TGTTTCATTTGGCTATAGCTCTACC 58.944 40.000 23.53 7.76 41.70 3.18
3074 3157 7.559897 GGATATTGGAGAACCTATTTCCACAAA 59.440 37.037 12.19 0.00 43.20 2.83
3077 3160 4.141135 TGGAGAACCTATTTCCACAAACCA 60.141 41.667 0.00 0.00 36.13 3.67
3081 3164 7.177744 GGAGAACCTATTTCCACAAACCAATAA 59.822 37.037 0.00 0.00 34.32 1.40
3082 3165 7.892609 AGAACCTATTTCCACAAACCAATAAC 58.107 34.615 0.00 0.00 34.32 1.89
3083 3166 7.728532 AGAACCTATTTCCACAAACCAATAACT 59.271 33.333 0.00 0.00 34.32 2.24
3089 3172 6.385649 TTCCACAAACCAATAACTGAGAAC 57.614 37.500 0.00 0.00 0.00 3.01
3092 3175 5.215160 CACAAACCAATAACTGAGAACTGC 58.785 41.667 0.00 0.00 0.00 4.40
3094 3177 3.073274 ACCAATAACTGAGAACTGCCC 57.927 47.619 0.00 0.00 0.00 5.36
3095 3178 2.375174 ACCAATAACTGAGAACTGCCCA 59.625 45.455 0.00 0.00 0.00 5.36
3096 3179 3.010584 ACCAATAACTGAGAACTGCCCAT 59.989 43.478 0.00 0.00 0.00 4.00
3097 3180 3.379372 CCAATAACTGAGAACTGCCCATG 59.621 47.826 0.00 0.00 0.00 3.66
3098 3181 4.264253 CAATAACTGAGAACTGCCCATGA 58.736 43.478 0.00 0.00 0.00 3.07
3099 3182 2.957402 AACTGAGAACTGCCCATGAA 57.043 45.000 0.00 0.00 0.00 2.57
3102 3185 3.771216 ACTGAGAACTGCCCATGAAAAT 58.229 40.909 0.00 0.00 0.00 1.82
3103 3186 3.760684 ACTGAGAACTGCCCATGAAAATC 59.239 43.478 0.00 0.00 0.00 2.17
3104 3187 3.091545 TGAGAACTGCCCATGAAAATCC 58.908 45.455 0.00 0.00 0.00 3.01
3105 3188 3.091545 GAGAACTGCCCATGAAAATCCA 58.908 45.455 0.00 0.00 0.00 3.41
3106 3189 3.703052 GAGAACTGCCCATGAAAATCCAT 59.297 43.478 0.00 0.00 0.00 3.41
3107 3190 3.703052 AGAACTGCCCATGAAAATCCATC 59.297 43.478 0.00 0.00 0.00 3.51
3108 3191 2.026641 ACTGCCCATGAAAATCCATCG 58.973 47.619 0.00 0.00 0.00 3.84
3109 3192 2.300433 CTGCCCATGAAAATCCATCGA 58.700 47.619 0.00 0.00 0.00 3.59
3110 3193 2.889045 CTGCCCATGAAAATCCATCGAT 59.111 45.455 0.00 0.00 0.00 3.59
3111 3194 2.624364 TGCCCATGAAAATCCATCGATG 59.376 45.455 18.76 18.76 0.00 3.84
3112 3195 2.886523 GCCCATGAAAATCCATCGATGA 59.113 45.455 26.86 12.92 0.00 2.92
3113 3196 3.318839 GCCCATGAAAATCCATCGATGAA 59.681 43.478 26.86 6.95 0.00 2.57
3114 3197 4.558095 GCCCATGAAAATCCATCGATGAAG 60.558 45.833 26.86 11.04 0.00 3.02
3115 3198 4.543692 CCATGAAAATCCATCGATGAAGC 58.456 43.478 26.86 9.77 0.00 3.86
3116 3199 4.037089 CCATGAAAATCCATCGATGAAGCA 59.963 41.667 26.86 14.60 0.00 3.91
3117 3200 5.450826 CCATGAAAATCCATCGATGAAGCAA 60.451 40.000 26.86 6.89 0.00 3.91
3118 3201 4.985413 TGAAAATCCATCGATGAAGCAAC 58.015 39.130 26.86 13.31 0.00 4.17
3119 3202 4.458642 TGAAAATCCATCGATGAAGCAACA 59.541 37.500 26.86 15.50 0.00 3.33
3120 3203 4.361451 AAATCCATCGATGAAGCAACAC 57.639 40.909 26.86 0.00 0.00 3.32
3121 3204 1.358877 TCCATCGATGAAGCAACACG 58.641 50.000 26.86 6.58 0.00 4.49
3122 3205 1.067213 TCCATCGATGAAGCAACACGA 60.067 47.619 26.86 8.90 37.39 4.35
3123 3206 1.935873 CCATCGATGAAGCAACACGAT 59.064 47.619 26.86 0.00 42.89 3.73
3124 3207 2.033407 CCATCGATGAAGCAACACGATC 60.033 50.000 26.86 0.00 40.77 3.69
3125 3208 2.362169 TCGATGAAGCAACACGATCA 57.638 45.000 0.00 0.00 0.00 2.92
3126 3209 2.682836 TCGATGAAGCAACACGATCAA 58.317 42.857 0.00 0.00 0.00 2.57
3127 3210 3.063485 TCGATGAAGCAACACGATCAAA 58.937 40.909 0.00 0.00 0.00 2.69
3128 3211 3.496507 TCGATGAAGCAACACGATCAAAA 59.503 39.130 0.00 0.00 0.00 2.44
3129 3212 4.154015 TCGATGAAGCAACACGATCAAAAT 59.846 37.500 0.00 0.00 0.00 1.82
3130 3213 4.853196 CGATGAAGCAACACGATCAAAATT 59.147 37.500 0.00 0.00 0.00 1.82
3131 3214 6.020984 CGATGAAGCAACACGATCAAAATTA 58.979 36.000 0.00 0.00 0.00 1.40
3132 3215 6.522855 CGATGAAGCAACACGATCAAAATTAA 59.477 34.615 0.00 0.00 0.00 1.40
3133 3216 7.060518 CGATGAAGCAACACGATCAAAATTAAA 59.939 33.333 0.00 0.00 0.00 1.52
3134 3217 7.993821 TGAAGCAACACGATCAAAATTAAAA 57.006 28.000 0.00 0.00 0.00 1.52
3135 3218 8.586570 TGAAGCAACACGATCAAAATTAAAAT 57.413 26.923 0.00 0.00 0.00 1.82
3136 3219 9.684448 TGAAGCAACACGATCAAAATTAAAATA 57.316 25.926 0.00 0.00 0.00 1.40
3202 3285 8.124808 TGAAATGATTTTCACATGAGGAATCA 57.875 30.769 17.76 17.76 44.81 2.57
3203 3286 8.030692 TGAAATGATTTTCACATGAGGAATCAC 58.969 33.333 17.79 10.67 44.81 3.06
3204 3287 7.713734 AATGATTTTCACATGAGGAATCACT 57.286 32.000 17.79 9.86 39.22 3.41
3205 3288 8.812513 AATGATTTTCACATGAGGAATCACTA 57.187 30.769 17.79 4.37 39.22 2.74
3206 3289 7.854557 TGATTTTCACATGAGGAATCACTAG 57.145 36.000 14.14 0.00 35.48 2.57
3207 3290 7.397221 TGATTTTCACATGAGGAATCACTAGT 58.603 34.615 14.14 0.00 35.48 2.57
3208 3291 8.539544 TGATTTTCACATGAGGAATCACTAGTA 58.460 33.333 14.14 0.00 35.48 1.82
3209 3292 9.383519 GATTTTCACATGAGGAATCACTAGTAA 57.616 33.333 0.00 0.00 32.97 2.24
3210 3293 9.739276 ATTTTCACATGAGGAATCACTAGTAAA 57.261 29.630 0.00 0.00 0.00 2.01
3211 3294 9.567776 TTTTCACATGAGGAATCACTAGTAAAA 57.432 29.630 0.00 0.00 0.00 1.52
3212 3295 9.567776 TTTCACATGAGGAATCACTAGTAAAAA 57.432 29.630 0.00 0.00 0.00 1.94
3235 3318 7.967890 AAATGGAATTTTCATGAGTGGTTTC 57.032 32.000 0.00 0.00 46.10 2.78
3236 3319 6.923199 ATGGAATTTTCATGAGTGGTTTCT 57.077 33.333 0.00 0.00 0.00 2.52
3237 3320 6.729690 TGGAATTTTCATGAGTGGTTTCTT 57.270 33.333 0.00 0.00 0.00 2.52
3238 3321 7.831691 TGGAATTTTCATGAGTGGTTTCTTA 57.168 32.000 0.00 0.00 0.00 2.10
3239 3322 8.421249 TGGAATTTTCATGAGTGGTTTCTTAT 57.579 30.769 0.00 0.00 0.00 1.73
3240 3323 8.306038 TGGAATTTTCATGAGTGGTTTCTTATG 58.694 33.333 0.00 0.00 34.25 1.90
3241 3324 8.306761 GGAATTTTCATGAGTGGTTTCTTATGT 58.693 33.333 0.00 0.00 34.48 2.29
3242 3325 9.132521 GAATTTTCATGAGTGGTTTCTTATGTG 57.867 33.333 0.00 0.00 34.48 3.21
3243 3326 7.815840 TTTTCATGAGTGGTTTCTTATGTGA 57.184 32.000 0.00 0.00 34.48 3.58
3244 3327 7.439157 TTTCATGAGTGGTTTCTTATGTGAG 57.561 36.000 0.00 0.00 34.48 3.51
3245 3328 6.114187 TCATGAGTGGTTTCTTATGTGAGT 57.886 37.500 0.00 0.00 34.48 3.41
3246 3329 6.166279 TCATGAGTGGTTTCTTATGTGAGTC 58.834 40.000 0.00 0.00 34.48 3.36
3247 3330 5.545063 TGAGTGGTTTCTTATGTGAGTCA 57.455 39.130 0.00 0.00 0.00 3.41
3248 3331 5.297547 TGAGTGGTTTCTTATGTGAGTCAC 58.702 41.667 16.68 16.68 34.56 3.67
3249 3332 4.642429 AGTGGTTTCTTATGTGAGTCACC 58.358 43.478 20.43 2.31 32.73 4.02
3250 3333 4.348168 AGTGGTTTCTTATGTGAGTCACCT 59.652 41.667 20.43 13.28 32.73 4.00
3251 3334 4.691216 GTGGTTTCTTATGTGAGTCACCTC 59.309 45.833 20.43 0.00 38.27 3.85
3252 3335 4.254492 GGTTTCTTATGTGAGTCACCTCC 58.746 47.826 20.43 3.66 36.86 4.30
3253 3336 4.020128 GGTTTCTTATGTGAGTCACCTCCT 60.020 45.833 20.43 5.53 36.86 3.69
3254 3337 4.808414 TTCTTATGTGAGTCACCTCCTG 57.192 45.455 20.43 7.31 36.86 3.86
3255 3338 3.779444 TCTTATGTGAGTCACCTCCTGT 58.221 45.455 20.43 2.80 36.86 4.00
3256 3339 3.511540 TCTTATGTGAGTCACCTCCTGTG 59.488 47.826 20.43 4.88 46.88 3.66
3267 3350 3.710209 ACCTCCTGTGAAAATCTCTGG 57.290 47.619 0.00 0.00 32.47 3.86
3268 3351 3.251484 ACCTCCTGTGAAAATCTCTGGA 58.749 45.455 7.51 7.51 36.22 3.86
3269 3352 3.652869 ACCTCCTGTGAAAATCTCTGGAA 59.347 43.478 8.65 0.00 37.48 3.53
3270 3353 4.104738 ACCTCCTGTGAAAATCTCTGGAAA 59.895 41.667 8.65 0.00 37.48 3.13
3271 3354 4.699257 CCTCCTGTGAAAATCTCTGGAAAG 59.301 45.833 8.65 2.18 37.48 2.62
3272 3355 5.310409 TCCTGTGAAAATCTCTGGAAAGT 57.690 39.130 5.82 0.00 35.85 2.66
3273 3356 6.433847 TCCTGTGAAAATCTCTGGAAAGTA 57.566 37.500 5.82 0.00 35.85 2.24
3274 3357 7.020827 TCCTGTGAAAATCTCTGGAAAGTAT 57.979 36.000 5.82 0.00 35.85 2.12
3275 3358 7.461749 TCCTGTGAAAATCTCTGGAAAGTATT 58.538 34.615 5.82 0.00 35.85 1.89
3276 3359 7.944554 TCCTGTGAAAATCTCTGGAAAGTATTT 59.055 33.333 5.82 0.00 43.98 1.40
3333 3416 8.357290 ACCTTTTTACTTAAGTTGAGTTTGGT 57.643 30.769 14.49 10.69 0.00 3.67
3334 3417 9.465199 ACCTTTTTACTTAAGTTGAGTTTGGTA 57.535 29.630 14.49 0.00 0.00 3.25
3398 3481 7.713764 AAAATATTTGCAAACTCAAGTGACC 57.286 32.000 15.41 0.00 0.00 4.02
3403 3486 1.972872 CAAACTCAAGTGACCTGCCT 58.027 50.000 0.00 0.00 0.00 4.75
3486 3570 8.356657 TCTGTAACACATTTTTATTTGGACCAG 58.643 33.333 0.00 0.00 0.00 4.00
3490 3574 8.800370 AACACATTTTTATTTGGACCAGTTTT 57.200 26.923 0.00 0.00 0.00 2.43
3507 3591 6.893554 ACCAGTTTTAATTAGGGTTGGATACC 59.106 38.462 12.38 0.00 46.99 2.73
3524 3608 7.959658 TGGATACCAAATTCATCTGTTTGAT 57.040 32.000 0.00 0.00 37.48 2.57
3651 3736 5.111293 CCACATGGAATATGGTTTTTCTGC 58.889 41.667 0.00 0.00 37.39 4.26
3652 3737 5.337410 CCACATGGAATATGGTTTTTCTGCA 60.337 40.000 0.00 0.00 37.39 4.41
3653 3738 6.342906 CACATGGAATATGGTTTTTCTGCAT 58.657 36.000 0.00 0.00 0.00 3.96
3654 3739 6.477688 CACATGGAATATGGTTTTTCTGCATC 59.522 38.462 0.00 0.00 0.00 3.91
3655 3740 6.381994 ACATGGAATATGGTTTTTCTGCATCT 59.618 34.615 0.00 0.00 0.00 2.90
3656 3741 6.455360 TGGAATATGGTTTTTCTGCATCTC 57.545 37.500 0.00 0.00 0.00 2.75
3657 3742 6.189859 TGGAATATGGTTTTTCTGCATCTCT 58.810 36.000 0.00 0.00 0.00 3.10
3658 3743 7.345691 TGGAATATGGTTTTTCTGCATCTCTA 58.654 34.615 0.00 0.00 0.00 2.43
3659 3744 7.500227 TGGAATATGGTTTTTCTGCATCTCTAG 59.500 37.037 0.00 0.00 0.00 2.43
3660 3745 7.716998 GGAATATGGTTTTTCTGCATCTCTAGA 59.283 37.037 0.00 0.00 0.00 2.43
3661 3746 8.674263 AATATGGTTTTTCTGCATCTCTAGAG 57.326 34.615 13.98 13.98 0.00 2.43
3662 3747 4.836825 TGGTTTTTCTGCATCTCTAGAGG 58.163 43.478 19.67 5.80 0.00 3.69
3663 3748 4.532126 TGGTTTTTCTGCATCTCTAGAGGA 59.468 41.667 19.67 5.77 0.00 3.71
3664 3749 5.013079 TGGTTTTTCTGCATCTCTAGAGGAA 59.987 40.000 19.67 11.44 0.00 3.36
3665 3750 6.118852 GGTTTTTCTGCATCTCTAGAGGAAT 58.881 40.000 19.67 4.01 0.00 3.01
3666 3751 7.092891 TGGTTTTTCTGCATCTCTAGAGGAATA 60.093 37.037 19.67 7.21 0.00 1.75
3667 3752 7.225734 GGTTTTTCTGCATCTCTAGAGGAATAC 59.774 40.741 19.67 13.48 0.00 1.89
3668 3753 5.697473 TTCTGCATCTCTAGAGGAATACG 57.303 43.478 19.67 4.98 0.00 3.06
3669 3754 4.720046 TCTGCATCTCTAGAGGAATACGT 58.280 43.478 19.67 0.00 0.00 3.57
3670 3755 4.517075 TCTGCATCTCTAGAGGAATACGTG 59.483 45.833 19.67 8.44 0.00 4.49
3671 3756 3.570125 TGCATCTCTAGAGGAATACGTGG 59.430 47.826 19.67 0.00 0.00 4.94
3672 3757 3.057174 GCATCTCTAGAGGAATACGTGGG 60.057 52.174 19.67 0.00 0.00 4.61
3673 3758 3.947612 TCTCTAGAGGAATACGTGGGT 57.052 47.619 19.67 0.00 0.00 4.51
3674 3759 3.552875 TCTCTAGAGGAATACGTGGGTG 58.447 50.000 19.67 0.00 0.00 4.61
3675 3760 2.623889 CTCTAGAGGAATACGTGGGTGG 59.376 54.545 12.27 0.00 0.00 4.61
3676 3761 2.242965 TCTAGAGGAATACGTGGGTGGA 59.757 50.000 0.00 0.00 0.00 4.02
3677 3762 1.192428 AGAGGAATACGTGGGTGGAC 58.808 55.000 0.00 0.00 0.00 4.02
3678 3763 0.899720 GAGGAATACGTGGGTGGACA 59.100 55.000 0.00 0.00 0.00 4.02
3679 3764 0.611714 AGGAATACGTGGGTGGACAC 59.388 55.000 0.00 0.00 37.99 3.67
3680 3765 0.322322 GGAATACGTGGGTGGACACA 59.678 55.000 0.00 0.00 41.38 3.72
3681 3766 1.270947 GGAATACGTGGGTGGACACAA 60.271 52.381 0.00 0.00 41.38 3.33
3682 3767 2.617021 GGAATACGTGGGTGGACACAAT 60.617 50.000 0.00 0.00 41.38 2.71
3683 3768 2.871096 ATACGTGGGTGGACACAATT 57.129 45.000 0.00 0.00 41.38 2.32
3684 3769 3.985019 ATACGTGGGTGGACACAATTA 57.015 42.857 0.00 0.00 41.38 1.40
3685 3770 2.642154 ACGTGGGTGGACACAATTAA 57.358 45.000 4.69 0.00 41.38 1.40
3686 3771 2.933573 ACGTGGGTGGACACAATTAAA 58.066 42.857 4.69 0.00 41.38 1.52
3687 3772 3.288964 ACGTGGGTGGACACAATTAAAA 58.711 40.909 4.69 0.00 41.38 1.52
3688 3773 3.067040 ACGTGGGTGGACACAATTAAAAC 59.933 43.478 4.69 0.00 41.38 2.43
3689 3774 3.551250 CGTGGGTGGACACAATTAAAACC 60.551 47.826 4.69 0.00 41.38 3.27
3690 3775 3.385111 GTGGGTGGACACAATTAAAACCA 59.615 43.478 4.69 0.00 40.99 3.67
3691 3776 3.385111 TGGGTGGACACAATTAAAACCAC 59.615 43.478 0.00 0.00 44.50 4.16
3693 3778 3.985008 GTGGACACAATTAAAACCACCC 58.015 45.455 0.00 0.00 40.96 4.61
3694 3779 2.966516 TGGACACAATTAAAACCACCCC 59.033 45.455 0.00 0.00 0.00 4.95
3695 3780 2.029739 GGACACAATTAAAACCACCCCG 60.030 50.000 0.00 0.00 0.00 5.73
3696 3781 1.964933 ACACAATTAAAACCACCCCGG 59.035 47.619 0.00 0.00 42.50 5.73
3697 3782 0.970640 ACAATTAAAACCACCCCGGC 59.029 50.000 0.00 0.00 39.03 6.13
3698 3783 0.248012 CAATTAAAACCACCCCGGCC 59.752 55.000 0.00 0.00 39.03 6.13
3699 3784 0.905809 AATTAAAACCACCCCGGCCC 60.906 55.000 0.00 0.00 39.03 5.80
3700 3785 1.806690 ATTAAAACCACCCCGGCCCT 61.807 55.000 0.00 0.00 39.03 5.19
3701 3786 2.429235 TTAAAACCACCCCGGCCCTC 62.429 60.000 0.00 0.00 39.03 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.069289 GGCAAAAGGAAAGGCAAGATTG 58.931 45.455 0.00 0.00 0.00 2.67
2 3 2.705127 TGGCAAAAGGAAAGGCAAGATT 59.295 40.909 0.00 0.00 34.72 2.40
3 4 2.328319 TGGCAAAAGGAAAGGCAAGAT 58.672 42.857 0.00 0.00 34.72 2.40
5 6 2.224354 ACATGGCAAAAGGAAAGGCAAG 60.224 45.455 0.00 0.00 41.29 4.01
6 7 1.767681 ACATGGCAAAAGGAAAGGCAA 59.232 42.857 0.00 0.00 41.29 4.52
7 8 1.344114 GACATGGCAAAAGGAAAGGCA 59.656 47.619 0.00 0.00 42.19 4.75
8 9 1.344114 TGACATGGCAAAAGGAAAGGC 59.656 47.619 0.00 0.00 0.00 4.35
9 10 3.749665 TTGACATGGCAAAAGGAAAGG 57.250 42.857 12.79 0.00 0.00 3.11
10 11 6.622833 AAATTTGACATGGCAAAAGGAAAG 57.377 33.333 29.61 0.00 40.72 2.62
11 12 7.772757 AGTAAAATTTGACATGGCAAAAGGAAA 59.227 29.630 29.61 12.24 40.72 3.13
12 13 7.278875 AGTAAAATTTGACATGGCAAAAGGAA 58.721 30.769 29.61 13.60 40.72 3.36
13 14 6.825610 AGTAAAATTTGACATGGCAAAAGGA 58.174 32.000 29.61 13.10 40.72 3.36
14 15 7.495135 AAGTAAAATTTGACATGGCAAAAGG 57.505 32.000 29.61 0.00 40.72 3.11
34 35 9.647918 TGGTAAAATTGCCATGGATATAAAGTA 57.352 29.630 18.40 0.00 38.05 2.24
35 36 8.546083 TGGTAAAATTGCCATGGATATAAAGT 57.454 30.769 18.40 0.00 38.05 2.66
50 51 7.052873 TGGCATGGGAAATAATGGTAAAATTG 58.947 34.615 0.00 0.00 0.00 2.32
54 55 8.503428 AATATGGCATGGGAAATAATGGTAAA 57.497 30.769 10.98 0.00 0.00 2.01
82 83 6.325286 AGTTGGCATGGAACTTAAAAAGGTAA 59.675 34.615 0.00 0.00 28.94 2.85
83 84 5.836358 AGTTGGCATGGAACTTAAAAAGGTA 59.164 36.000 0.00 0.00 28.94 3.08
96 97 2.380064 AAAGGTTGAGTTGGCATGGA 57.620 45.000 0.00 0.00 0.00 3.41
148 149 6.147492 TGTGAACAAGAATTAATTTGCCATGC 59.853 34.615 1.43 0.00 0.00 4.06
149 150 7.655236 TGTGAACAAGAATTAATTTGCCATG 57.345 32.000 1.43 0.00 0.00 3.66
151 152 6.649973 CCATGTGAACAAGAATTAATTTGCCA 59.350 34.615 1.43 0.00 0.00 4.92
156 157 8.851541 ATTTGCCATGTGAACAAGAATTAATT 57.148 26.923 0.00 0.00 0.00 1.40
183 184 4.767578 AAGTGACATCTGACCATATGCT 57.232 40.909 0.00 0.00 0.00 3.79
184 185 4.877823 TGAAAGTGACATCTGACCATATGC 59.122 41.667 0.00 0.00 0.00 3.14
186 187 8.267183 TGTTATGAAAGTGACATCTGACCATAT 58.733 33.333 0.00 0.00 0.00 1.78
234 235 7.753132 TCAAATGAATTTACCGTGCTATGAAAC 59.247 33.333 0.00 0.00 0.00 2.78
238 239 7.253750 GCTTTCAAATGAATTTACCGTGCTATG 60.254 37.037 0.00 0.00 33.54 2.23
248 249 8.883954 TTGTCATGTGCTTTCAAATGAATTTA 57.116 26.923 0.17 0.00 45.72 1.40
270 271 9.677567 GTCGTGGCATTTTATATATGAATTTGT 57.322 29.630 0.00 0.00 0.00 2.83
316 317 2.008242 AAAAGGTGCAAGGTGCCATA 57.992 45.000 0.00 0.00 44.23 2.74
327 328 6.852664 ACTATGTAACATAGCAAAAAGGTGC 58.147 36.000 0.00 0.00 45.28 5.01
358 359 5.691754 GGTCAAAATTCTCATCACAACAACC 59.308 40.000 0.00 0.00 0.00 3.77
364 365 6.669125 AATTGGGTCAAAATTCTCATCACA 57.331 33.333 0.00 0.00 0.00 3.58
365 366 7.116805 GTGAAATTGGGTCAAAATTCTCATCAC 59.883 37.037 0.00 0.00 30.25 3.06
428 430 5.250200 AGTGTCAGTAACCTCACAACAAAA 58.750 37.500 0.00 0.00 33.84 2.44
429 431 4.839121 AGTGTCAGTAACCTCACAACAAA 58.161 39.130 0.00 0.00 33.84 2.83
453 455 6.130058 GTGCGAAACAAAAGAACAAACAAAA 58.870 32.000 0.00 0.00 0.00 2.44
568 575 5.175127 TCTACAACAATGCATGTCGTGTAT 58.825 37.500 0.00 0.00 42.99 2.29
573 580 4.201714 ACGATTCTACAACAATGCATGTCG 60.202 41.667 0.00 0.00 42.99 4.35
630 637 9.267071 AGGGATAAAAAGGCATGTAAAATTACT 57.733 29.630 5.05 0.00 34.77 2.24
639 646 6.432403 TTTGAAAGGGATAAAAAGGCATGT 57.568 33.333 0.00 0.00 0.00 3.21
644 651 6.710295 CCCAACTTTTGAAAGGGATAAAAAGG 59.290 38.462 8.23 0.00 41.67 3.11
653 660 1.416030 CACCCCCAACTTTTGAAAGGG 59.584 52.381 8.23 2.95 40.31 3.95
660 667 2.101640 ATTCTGCACCCCCAACTTTT 57.898 45.000 0.00 0.00 0.00 2.27
666 673 5.723887 ACAAATTATAAATTCTGCACCCCCA 59.276 36.000 0.00 0.00 0.00 4.96
710 717 6.372659 CCAGTATTAGCTGCAGAGAAGAAAAA 59.627 38.462 20.43 0.00 35.28 1.94
711 718 5.877012 CCAGTATTAGCTGCAGAGAAGAAAA 59.123 40.000 20.43 0.10 35.28 2.29
712 719 5.423015 CCAGTATTAGCTGCAGAGAAGAAA 58.577 41.667 20.43 1.59 35.28 2.52
713 720 4.141846 CCCAGTATTAGCTGCAGAGAAGAA 60.142 45.833 20.43 3.23 35.28 2.52
714 721 3.386078 CCCAGTATTAGCTGCAGAGAAGA 59.614 47.826 20.43 4.44 35.28 2.87
715 722 3.726607 CCCAGTATTAGCTGCAGAGAAG 58.273 50.000 20.43 0.00 35.28 2.85
716 723 2.158900 GCCCAGTATTAGCTGCAGAGAA 60.159 50.000 20.43 10.71 35.28 2.87
717 724 1.414181 GCCCAGTATTAGCTGCAGAGA 59.586 52.381 20.43 0.00 35.28 3.10
718 725 1.542108 GGCCCAGTATTAGCTGCAGAG 60.542 57.143 20.43 0.00 35.28 3.35
719 726 0.469917 GGCCCAGTATTAGCTGCAGA 59.530 55.000 20.43 0.00 35.28 4.26
720 727 0.471617 AGGCCCAGTATTAGCTGCAG 59.528 55.000 10.11 10.11 35.28 4.41
721 728 0.918983 AAGGCCCAGTATTAGCTGCA 59.081 50.000 0.00 0.00 35.28 4.41
722 729 2.058593 AAAGGCCCAGTATTAGCTGC 57.941 50.000 0.00 0.00 35.28 5.25
723 730 3.763897 ACAAAAAGGCCCAGTATTAGCTG 59.236 43.478 0.00 0.00 36.31 4.24
724 731 4.017126 GACAAAAAGGCCCAGTATTAGCT 58.983 43.478 0.00 0.00 0.00 3.32
725 732 3.130516 GGACAAAAAGGCCCAGTATTAGC 59.869 47.826 0.00 0.00 40.85 3.09
726 733 4.983671 GGACAAAAAGGCCCAGTATTAG 57.016 45.455 0.00 0.00 40.85 1.73
736 743 0.598065 ATCAGCGTGGACAAAAAGGC 59.402 50.000 0.00 0.00 0.00 4.35
737 744 1.135972 CGATCAGCGTGGACAAAAAGG 60.136 52.381 0.00 0.00 34.64 3.11
738 745 1.798223 TCGATCAGCGTGGACAAAAAG 59.202 47.619 0.00 0.00 41.80 2.27
739 746 1.872388 TCGATCAGCGTGGACAAAAA 58.128 45.000 0.00 0.00 41.80 1.94
740 747 1.731709 CATCGATCAGCGTGGACAAAA 59.268 47.619 0.00 0.00 41.80 2.44
741 748 1.358877 CATCGATCAGCGTGGACAAA 58.641 50.000 0.00 0.00 41.80 2.83
742 749 0.460109 CCATCGATCAGCGTGGACAA 60.460 55.000 0.00 0.00 40.96 3.18
743 750 1.141665 CCATCGATCAGCGTGGACA 59.858 57.895 0.00 0.00 40.96 4.02
744 751 1.592669 CCCATCGATCAGCGTGGAC 60.593 63.158 5.63 0.00 40.96 4.02
745 752 2.058001 ACCCATCGATCAGCGTGGA 61.058 57.895 5.63 0.00 40.96 4.02
746 753 1.884464 CACCCATCGATCAGCGTGG 60.884 63.158 0.00 0.00 41.80 4.94
747 754 0.249615 ATCACCCATCGATCAGCGTG 60.250 55.000 0.00 0.00 41.80 5.34
748 755 0.465705 AATCACCCATCGATCAGCGT 59.534 50.000 0.00 0.00 41.80 5.07
749 756 1.143305 GAATCACCCATCGATCAGCG 58.857 55.000 0.00 0.00 42.69 5.18
750 757 1.202687 TGGAATCACCCATCGATCAGC 60.203 52.381 0.00 0.00 38.00 4.26
751 758 2.487934 GTGGAATCACCCATCGATCAG 58.512 52.381 0.00 0.00 38.66 2.90
752 759 2.620251 GTGGAATCACCCATCGATCA 57.380 50.000 0.00 0.00 38.66 2.92
762 769 3.564225 ACAAGAACTTTCGGTGGAATCAC 59.436 43.478 0.00 0.00 42.91 3.06
763 770 3.815809 ACAAGAACTTTCGGTGGAATCA 58.184 40.909 0.00 0.00 30.88 2.57
764 771 4.610680 CGAACAAGAACTTTCGGTGGAATC 60.611 45.833 0.00 0.00 40.73 2.52
765 772 3.250040 CGAACAAGAACTTTCGGTGGAAT 59.750 43.478 0.00 0.00 40.73 3.01
766 773 2.610374 CGAACAAGAACTTTCGGTGGAA 59.390 45.455 0.00 0.00 40.73 3.53
767 774 2.206750 CGAACAAGAACTTTCGGTGGA 58.793 47.619 0.00 0.00 40.73 4.02
768 775 2.663279 CGAACAAGAACTTTCGGTGG 57.337 50.000 0.00 0.00 40.73 4.61
772 779 1.191647 CGGACCGAACAAGAACTTTCG 59.808 52.381 8.64 0.00 43.40 3.46
773 780 2.207590 ACGGACCGAACAAGAACTTTC 58.792 47.619 23.38 0.00 0.00 2.62
774 781 2.207590 GACGGACCGAACAAGAACTTT 58.792 47.619 23.38 0.00 0.00 2.66
775 782 1.137479 TGACGGACCGAACAAGAACTT 59.863 47.619 23.38 0.00 0.00 2.66
776 783 0.748450 TGACGGACCGAACAAGAACT 59.252 50.000 23.38 0.00 0.00 3.01
777 784 1.137513 CTGACGGACCGAACAAGAAC 58.862 55.000 23.38 2.02 0.00 3.01
778 785 0.599204 GCTGACGGACCGAACAAGAA 60.599 55.000 23.38 0.00 0.00 2.52
779 786 1.006571 GCTGACGGACCGAACAAGA 60.007 57.895 23.38 0.00 0.00 3.02
780 787 1.006102 AGCTGACGGACCGAACAAG 60.006 57.895 23.38 12.58 0.00 3.16
781 788 1.006571 GAGCTGACGGACCGAACAA 60.007 57.895 23.38 1.54 0.00 2.83
782 789 2.649034 GAGCTGACGGACCGAACA 59.351 61.111 23.38 18.14 0.00 3.18
783 790 2.126031 GGAGCTGACGGACCGAAC 60.126 66.667 23.38 14.41 0.00 3.95
784 791 3.744719 CGGAGCTGACGGACCGAA 61.745 66.667 23.38 7.41 46.94 4.30
787 794 0.248949 GATAACGGAGCTGACGGACC 60.249 60.000 11.55 0.00 35.23 4.46
788 795 0.454600 TGATAACGGAGCTGACGGAC 59.545 55.000 11.55 1.90 35.23 4.79
789 796 0.454600 GTGATAACGGAGCTGACGGA 59.545 55.000 11.55 0.55 35.23 4.69
790 797 0.527817 GGTGATAACGGAGCTGACGG 60.528 60.000 11.55 0.00 35.23 4.79
791 798 0.866061 CGGTGATAACGGAGCTGACG 60.866 60.000 0.00 0.00 37.36 4.35
792 799 2.959275 CGGTGATAACGGAGCTGAC 58.041 57.895 0.00 0.00 0.00 3.51
862 869 4.517832 CCCAAACTACCTTTTATATCCGCC 59.482 45.833 0.00 0.00 0.00 6.13
884 891 4.158394 TGCTGCCAATTAGATTGACTTTCC 59.842 41.667 0.00 0.00 42.83 3.13
1024 1033 3.453679 GGAGGAGCTCTCGCCGTT 61.454 66.667 14.64 0.00 43.34 4.44
1040 1049 2.072298 CTCTTTCGCCTCTCTTGTTGG 58.928 52.381 0.00 0.00 0.00 3.77
1069 1078 1.294659 CGTCTCTTGTTGCAGGAGCC 61.295 60.000 3.76 0.00 37.48 4.70
1095 1104 1.517257 CATCCAGTCGCTGTCGTCC 60.517 63.158 6.19 0.00 36.96 4.79
1099 1108 0.532573 TCTTCCATCCAGTCGCTGTC 59.467 55.000 6.19 0.00 0.00 3.51
1100 1109 0.247736 GTCTTCCATCCAGTCGCTGT 59.752 55.000 6.19 0.00 0.00 4.40
1102 1111 0.965866 TCGTCTTCCATCCAGTCGCT 60.966 55.000 0.00 0.00 0.00 4.93
1103 1112 0.103208 ATCGTCTTCCATCCAGTCGC 59.897 55.000 0.00 0.00 0.00 5.19
1105 1114 1.808133 GCCATCGTCTTCCATCCAGTC 60.808 57.143 0.00 0.00 0.00 3.51
1106 1115 0.179000 GCCATCGTCTTCCATCCAGT 59.821 55.000 0.00 0.00 0.00 4.00
1108 1117 1.143838 CGCCATCGTCTTCCATCCA 59.856 57.895 0.00 0.00 0.00 3.41
1109 1118 0.598680 CTCGCCATCGTCTTCCATCC 60.599 60.000 0.00 0.00 36.96 3.51
1116 1128 1.227380 GCAATCCTCGCCATCGTCT 60.227 57.895 0.00 0.00 36.96 4.18
1710 1725 1.742880 CTCCTCCACGTACGACCGA 60.743 63.158 24.41 12.37 0.00 4.69
1767 1782 1.079405 GAACTCGACGGCATGGGAA 60.079 57.895 0.00 0.00 0.00 3.97
1942 1957 0.537371 ACCTTAGTGTTGGCCAGCAC 60.537 55.000 37.35 37.35 41.94 4.40
1978 1993 0.388006 TTGTTCTTCTCGATCGCGCA 60.388 50.000 11.09 0.00 37.46 6.09
2086 2101 2.417516 CCGGTAGATGTCGCCCTG 59.582 66.667 0.00 0.00 0.00 4.45
2116 2131 3.894638 AGCCTTGCTGCTGGTGGT 61.895 61.111 0.00 0.00 40.90 4.16
2337 2352 1.895798 TCCATCACGAACTCAAGCTCT 59.104 47.619 0.00 0.00 0.00 4.09
2409 2424 1.480127 GGGTCCAGGTAGTAGCCGTAT 60.480 57.143 0.00 0.00 0.00 3.06
2490 2505 0.107017 ACTTGTGCAGTTGCTCCAGT 60.107 50.000 5.62 6.40 42.66 4.00
2725 2754 3.560251 AGGGGCACGCAACAGAGT 61.560 61.111 0.00 0.00 46.88 3.24
2726 2755 3.052082 CAGGGGCACGCAACAGAG 61.052 66.667 0.00 0.00 46.88 3.35
2728 2757 3.925630 ATCCAGGGGCACGCAACAG 62.926 63.158 0.00 0.00 46.88 3.16
2729 2758 3.965258 ATCCAGGGGCACGCAACA 61.965 61.111 0.00 0.00 46.88 3.33
2733 2762 4.424711 TTCCATCCAGGGGCACGC 62.425 66.667 0.00 0.00 43.76 5.34
2734 2763 2.438434 GTTCCATCCAGGGGCACG 60.438 66.667 0.00 0.00 38.24 5.34
2735 2764 1.039233 CATGTTCCATCCAGGGGCAC 61.039 60.000 0.00 0.00 38.24 5.01
2736 2765 1.307309 CATGTTCCATCCAGGGGCA 59.693 57.895 0.00 0.00 38.24 5.36
2737 2766 1.456331 CCATGTTCCATCCAGGGGC 60.456 63.158 0.00 0.00 38.24 5.80
2751 2822 8.830201 TCAACCAAAAGAATTGAAATACCATG 57.170 30.769 0.00 0.00 29.56 3.66
2794 2869 7.931407 TCGCATATTACAGTTATGATCAACCTT 59.069 33.333 0.00 0.00 30.16 3.50
2800 2875 7.334574 ACGTTCGCATATTACAGTTATGATC 57.665 36.000 0.00 0.00 30.16 2.92
2875 2955 3.067742 GGATGATGGAGTGCAATTCCTTG 59.932 47.826 16.91 0.00 44.26 3.61
2896 2979 9.114952 ACCAAACCAAAACATTTTAAATAGTGG 57.885 29.630 0.00 0.00 0.00 4.00
2904 2987 6.947464 TGGAGAACCAAACCAAAACATTTTA 58.053 32.000 0.00 0.00 43.91 1.52
2984 3067 0.955919 GTGGCTCAAAGGAGGAACCG 60.956 60.000 0.00 0.00 44.74 4.44
3041 3124 4.785301 AGGTTCTCCAATATCCACATGTG 58.215 43.478 19.31 19.31 35.89 3.21
3074 3157 2.375174 TGGGCAGTTCTCAGTTATTGGT 59.625 45.455 0.00 0.00 0.00 3.67
3077 3160 4.574674 TCATGGGCAGTTCTCAGTTATT 57.425 40.909 0.00 0.00 0.00 1.40
3081 3164 2.957402 TTTCATGGGCAGTTCTCAGT 57.043 45.000 0.00 0.00 0.00 3.41
3082 3165 3.129988 GGATTTTCATGGGCAGTTCTCAG 59.870 47.826 0.00 0.00 0.00 3.35
3083 3166 3.091545 GGATTTTCATGGGCAGTTCTCA 58.908 45.455 0.00 0.00 0.00 3.27
3089 3172 2.300433 TCGATGGATTTTCATGGGCAG 58.700 47.619 0.00 0.00 0.00 4.85
3092 3175 4.558095 GCTTCATCGATGGATTTTCATGGG 60.558 45.833 24.61 2.61 0.00 4.00
3094 3177 5.177725 TGCTTCATCGATGGATTTTCATG 57.822 39.130 24.61 4.08 0.00 3.07
3095 3178 5.125900 TGTTGCTTCATCGATGGATTTTCAT 59.874 36.000 24.61 0.00 0.00 2.57
3096 3179 4.458642 TGTTGCTTCATCGATGGATTTTCA 59.541 37.500 24.61 14.33 0.00 2.69
3097 3180 4.795278 GTGTTGCTTCATCGATGGATTTTC 59.205 41.667 24.61 12.18 0.00 2.29
3098 3181 4.672542 CGTGTTGCTTCATCGATGGATTTT 60.673 41.667 24.61 0.00 0.00 1.82
3099 3182 3.181507 CGTGTTGCTTCATCGATGGATTT 60.182 43.478 24.61 0.00 0.00 2.17
3102 3185 1.067213 TCGTGTTGCTTCATCGATGGA 60.067 47.619 24.61 16.21 0.00 3.41
3103 3186 1.358877 TCGTGTTGCTTCATCGATGG 58.641 50.000 24.61 11.15 0.00 3.51
3104 3187 2.604462 TGATCGTGTTGCTTCATCGATG 59.396 45.455 19.61 19.61 40.48 3.84
3105 3188 2.892374 TGATCGTGTTGCTTCATCGAT 58.108 42.857 0.00 0.00 42.52 3.59
3106 3189 2.362169 TGATCGTGTTGCTTCATCGA 57.638 45.000 0.00 0.00 35.14 3.59
3107 3190 3.454042 TTTGATCGTGTTGCTTCATCG 57.546 42.857 0.00 0.00 0.00 3.84
3108 3191 7.795431 TTAATTTTGATCGTGTTGCTTCATC 57.205 32.000 0.00 0.00 0.00 2.92
3109 3192 8.586570 TTTTAATTTTGATCGTGTTGCTTCAT 57.413 26.923 0.00 0.00 0.00 2.57
3110 3193 7.993821 TTTTAATTTTGATCGTGTTGCTTCA 57.006 28.000 0.00 0.00 0.00 3.02
3177 3260 8.030692 GTGATTCCTCATGTGAAAATCATTTCA 58.969 33.333 19.39 0.11 41.89 2.69
3178 3261 8.248945 AGTGATTCCTCATGTGAAAATCATTTC 58.751 33.333 19.39 12.05 37.97 2.17
3179 3262 8.130671 AGTGATTCCTCATGTGAAAATCATTT 57.869 30.769 19.39 12.80 37.97 2.32
3180 3263 7.713734 AGTGATTCCTCATGTGAAAATCATT 57.286 32.000 19.39 15.45 37.97 2.57
3181 3264 8.051535 ACTAGTGATTCCTCATGTGAAAATCAT 58.948 33.333 19.39 14.04 37.97 2.45
3182 3265 7.397221 ACTAGTGATTCCTCATGTGAAAATCA 58.603 34.615 15.56 15.56 35.61 2.57
3183 3266 7.856145 ACTAGTGATTCCTCATGTGAAAATC 57.144 36.000 0.00 12.29 32.98 2.17
3184 3267 9.739276 TTTACTAGTGATTCCTCATGTGAAAAT 57.261 29.630 5.39 0.00 32.98 1.82
3185 3268 9.567776 TTTTACTAGTGATTCCTCATGTGAAAA 57.432 29.630 5.39 0.00 32.98 2.29
3186 3269 9.567776 TTTTTACTAGTGATTCCTCATGTGAAA 57.432 29.630 5.39 0.00 32.98 2.69
3209 3292 8.750515 AAACCACTCATGAAAATTCCATTTTT 57.249 26.923 0.00 0.00 42.15 1.94
3210 3293 8.212995 AGAAACCACTCATGAAAATTCCATTTT 58.787 29.630 0.00 0.00 44.56 1.82
3211 3294 7.738847 AGAAACCACTCATGAAAATTCCATTT 58.261 30.769 0.00 0.00 0.00 2.32
3212 3295 7.307131 AGAAACCACTCATGAAAATTCCATT 57.693 32.000 0.00 0.00 0.00 3.16
3213 3296 6.923199 AGAAACCACTCATGAAAATTCCAT 57.077 33.333 0.00 0.00 0.00 3.41
3214 3297 6.729690 AAGAAACCACTCATGAAAATTCCA 57.270 33.333 0.00 0.00 0.00 3.53
3215 3298 8.306761 ACATAAGAAACCACTCATGAAAATTCC 58.693 33.333 0.00 0.00 0.00 3.01
3216 3299 9.132521 CACATAAGAAACCACTCATGAAAATTC 57.867 33.333 0.00 0.00 0.00 2.17
3217 3300 8.859090 TCACATAAGAAACCACTCATGAAAATT 58.141 29.630 0.00 0.00 0.00 1.82
3218 3301 8.408043 TCACATAAGAAACCACTCATGAAAAT 57.592 30.769 0.00 0.00 0.00 1.82
3219 3302 7.502226 ACTCACATAAGAAACCACTCATGAAAA 59.498 33.333 0.00 0.00 0.00 2.29
3220 3303 6.998074 ACTCACATAAGAAACCACTCATGAAA 59.002 34.615 0.00 0.00 0.00 2.69
3221 3304 6.533730 ACTCACATAAGAAACCACTCATGAA 58.466 36.000 0.00 0.00 0.00 2.57
3222 3305 6.114187 ACTCACATAAGAAACCACTCATGA 57.886 37.500 0.00 0.00 0.00 3.07
3223 3306 5.934043 TGACTCACATAAGAAACCACTCATG 59.066 40.000 0.00 0.00 0.00 3.07
3224 3307 5.934625 GTGACTCACATAAGAAACCACTCAT 59.065 40.000 4.17 0.00 34.08 2.90
3225 3308 5.297547 GTGACTCACATAAGAAACCACTCA 58.702 41.667 4.17 0.00 34.08 3.41
3226 3309 4.691216 GGTGACTCACATAAGAAACCACTC 59.309 45.833 11.34 0.00 35.86 3.51
3227 3310 4.348168 AGGTGACTCACATAAGAAACCACT 59.652 41.667 11.34 0.00 32.90 4.00
3228 3311 4.642429 AGGTGACTCACATAAGAAACCAC 58.358 43.478 11.34 0.00 32.90 4.16
3229 3312 4.974645 AGGTGACTCACATAAGAAACCA 57.025 40.909 11.34 0.00 32.90 3.67
3247 3330 3.251484 TCCAGAGATTTTCACAGGAGGT 58.749 45.455 0.00 0.00 0.00 3.85
3248 3331 3.988976 TCCAGAGATTTTCACAGGAGG 57.011 47.619 0.00 0.00 0.00 4.30
3249 3332 5.312079 ACTTTCCAGAGATTTTCACAGGAG 58.688 41.667 0.00 0.00 0.00 3.69
3250 3333 5.310409 ACTTTCCAGAGATTTTCACAGGA 57.690 39.130 0.00 0.00 0.00 3.86
3251 3334 7.693969 AATACTTTCCAGAGATTTTCACAGG 57.306 36.000 0.00 0.00 0.00 4.00
3252 3335 9.007901 AGAAATACTTTCCAGAGATTTTCACAG 57.992 33.333 0.00 0.00 40.54 3.66
3253 3336 8.924511 AGAAATACTTTCCAGAGATTTTCACA 57.075 30.769 0.00 0.00 40.54 3.58
3307 3390 9.465199 ACCAAACTCAACTTAAGTAAAAAGGTA 57.535 29.630 8.92 0.00 0.00 3.08
3308 3391 8.357290 ACCAAACTCAACTTAAGTAAAAAGGT 57.643 30.769 8.92 8.60 0.00 3.50
3398 3481 2.503895 AGGGAGATTTTCACAGGCAG 57.496 50.000 0.00 0.00 0.00 4.85
3576 3660 7.920682 AGGTAAACATTGTGTTCATTCAACTTC 59.079 33.333 0.00 0.00 40.14 3.01
3582 3666 6.345723 CGCAAAGGTAAACATTGTGTTCATTC 60.346 38.462 0.00 0.00 40.14 2.67
3651 3736 4.022762 CACCCACGTATTCCTCTAGAGATG 60.023 50.000 21.76 8.90 0.00 2.90
3652 3737 4.145807 CACCCACGTATTCCTCTAGAGAT 58.854 47.826 21.76 10.05 0.00 2.75
3653 3738 3.552875 CACCCACGTATTCCTCTAGAGA 58.447 50.000 21.76 2.09 0.00 3.10
3654 3739 2.623889 CCACCCACGTATTCCTCTAGAG 59.376 54.545 13.18 13.18 0.00 2.43
3655 3740 2.242965 TCCACCCACGTATTCCTCTAGA 59.757 50.000 0.00 0.00 0.00 2.43
3656 3741 2.361438 GTCCACCCACGTATTCCTCTAG 59.639 54.545 0.00 0.00 0.00 2.43
3657 3742 2.291735 TGTCCACCCACGTATTCCTCTA 60.292 50.000 0.00 0.00 0.00 2.43
3658 3743 1.192428 GTCCACCCACGTATTCCTCT 58.808 55.000 0.00 0.00 0.00 3.69
3659 3744 0.899720 TGTCCACCCACGTATTCCTC 59.100 55.000 0.00 0.00 0.00 3.71
3660 3745 0.611714 GTGTCCACCCACGTATTCCT 59.388 55.000 0.00 0.00 0.00 3.36
3661 3746 0.322322 TGTGTCCACCCACGTATTCC 59.678 55.000 0.00 0.00 38.20 3.01
3662 3747 2.172851 TTGTGTCCACCCACGTATTC 57.827 50.000 0.00 0.00 38.20 1.75
3663 3748 2.871096 ATTGTGTCCACCCACGTATT 57.129 45.000 0.00 0.00 38.20 1.89
3664 3749 2.871096 AATTGTGTCCACCCACGTAT 57.129 45.000 0.00 0.00 38.20 3.06
3665 3750 3.766068 TTAATTGTGTCCACCCACGTA 57.234 42.857 0.00 0.00 38.20 3.57
3666 3751 2.642154 TTAATTGTGTCCACCCACGT 57.358 45.000 0.00 0.00 38.20 4.49
3667 3752 3.551250 GGTTTTAATTGTGTCCACCCACG 60.551 47.826 0.00 0.00 38.20 4.94
3668 3753 3.385111 TGGTTTTAATTGTGTCCACCCAC 59.615 43.478 0.00 0.00 35.86 4.61
3669 3754 3.385111 GTGGTTTTAATTGTGTCCACCCA 59.615 43.478 11.17 0.00 39.25 4.51
3670 3755 3.985008 GTGGTTTTAATTGTGTCCACCC 58.015 45.455 11.17 0.00 39.25 4.61
3672 3757 3.243941 GGGGTGGTTTTAATTGTGTCCAC 60.244 47.826 12.86 12.86 42.87 4.02
3673 3758 2.966516 GGGGTGGTTTTAATTGTGTCCA 59.033 45.455 0.00 0.00 0.00 4.02
3674 3759 2.029739 CGGGGTGGTTTTAATTGTGTCC 60.030 50.000 0.00 0.00 0.00 4.02
3675 3760 2.029739 CCGGGGTGGTTTTAATTGTGTC 60.030 50.000 0.00 0.00 0.00 3.67
3676 3761 1.964933 CCGGGGTGGTTTTAATTGTGT 59.035 47.619 0.00 0.00 0.00 3.72
3677 3762 1.337354 GCCGGGGTGGTTTTAATTGTG 60.337 52.381 2.18 0.00 41.21 3.33
3678 3763 0.970640 GCCGGGGTGGTTTTAATTGT 59.029 50.000 2.18 0.00 41.21 2.71
3679 3764 0.248012 GGCCGGGGTGGTTTTAATTG 59.752 55.000 2.18 0.00 41.21 2.32
3680 3765 0.905809 GGGCCGGGGTGGTTTTAATT 60.906 55.000 2.18 0.00 41.21 1.40
3681 3766 1.305465 GGGCCGGGGTGGTTTTAAT 60.305 57.895 2.18 0.00 41.21 1.40
3682 3767 2.117858 GGGCCGGGGTGGTTTTAA 59.882 61.111 2.18 0.00 41.21 1.52
3683 3768 2.859971 AGGGCCGGGGTGGTTTTA 60.860 61.111 2.18 0.00 41.21 1.52
3684 3769 4.295199 GAGGGCCGGGGTGGTTTT 62.295 66.667 2.18 0.00 41.21 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.