Multiple sequence alignment - TraesCS6A01G416000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G416000 chr6A 100.000 2764 0 0 1 2764 615434685 615431922 0.000000e+00 5105
1 TraesCS6A01G416000 chr6A 92.949 156 11 0 1942 2097 124136673 124136828 7.700000e-56 228
2 TraesCS6A01G416000 chr6A 91.743 109 6 3 658 764 146548614 146548507 6.170000e-32 148
3 TraesCS6A01G416000 chr6D 87.425 835 55 28 985 1792 470602958 470602147 0.000000e+00 915
4 TraesCS6A01G416000 chr6D 93.048 374 23 2 2391 2764 470575011 470574641 6.730000e-151 544
5 TraesCS6A01G416000 chr6D 94.406 286 8 2 2113 2391 470575376 470575092 1.520000e-117 433
6 TraesCS6A01G416000 chr6D 86.561 253 17 8 1 241 470603969 470603722 2.110000e-66 263
7 TraesCS6A01G416000 chr6D 95.495 111 3 1 650 760 470603327 470603219 2.830000e-40 176
8 TraesCS6A01G416000 chr6D 98.246 57 1 0 1879 1935 470575459 470575403 1.750000e-17 100
9 TraesCS6A01G416000 chr6B 83.889 540 47 20 986 1500 720559743 720560267 1.930000e-131 479
10 TraesCS6A01G416000 chr6B 98.864 264 3 0 1499 1762 720560349 720560612 3.220000e-129 472
11 TraesCS6A01G416000 chr6B 80.439 501 41 33 292 760 720558987 720559462 2.050000e-86 329
12 TraesCS6A01G416000 chr6B 92.411 224 13 2 2543 2762 720560723 720560946 1.600000e-82 316
13 TraesCS6A01G416000 chr6B 84.912 285 23 16 5 284 720558672 720558941 1.260000e-68 270
14 TraesCS6A01G416000 chr6B 91.892 74 6 0 2148 2221 720560619 720560692 1.350000e-18 104
15 TraesCS6A01G416000 chr2D 95.364 151 7 0 1943 2093 187460478 187460628 9.890000e-60 241
16 TraesCS6A01G416000 chr2A 94.118 153 9 0 1941 2093 67077888 67078040 1.660000e-57 233
17 TraesCS6A01G416000 chr2A 84.314 153 19 1 1941 2093 31879713 31879860 7.980000e-31 145
18 TraesCS6A01G416000 chr2B 92.157 153 11 1 1941 2093 104074685 104074836 6.000000e-52 215
19 TraesCS6A01G416000 chr2B 91.667 156 12 1 1941 2096 506174709 506174555 6.000000e-52 215
20 TraesCS6A01G416000 chr1A 93.636 110 3 2 655 761 119739117 119739009 7.920000e-36 161
21 TraesCS6A01G416000 chr4A 91.057 123 4 5 644 762 504218924 504218805 2.850000e-35 159
22 TraesCS6A01G416000 chr4A 86.239 109 14 1 1984 2092 114484426 114484533 1.740000e-22 117
23 TraesCS6A01G416000 chr7A 90.244 123 5 6 643 758 731255704 731255826 1.330000e-33 154
24 TraesCS6A01G416000 chr5A 94.175 103 3 3 659 759 136393617 136393718 1.330000e-33 154
25 TraesCS6A01G416000 chr5A 94.118 102 3 3 658 756 118666159 118666260 4.770000e-33 152
26 TraesCS6A01G416000 chr7D 90.179 112 11 0 643 754 634667215 634667326 2.220000e-31 147
27 TraesCS6A01G416000 chr4B 86.239 109 14 1 1984 2092 433965437 433965330 1.740000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G416000 chr6A 615431922 615434685 2763 True 5105.000000 5105 100.000000 1 2764 1 chr6A.!!$R2 2763
1 TraesCS6A01G416000 chr6D 470602147 470603969 1822 True 451.333333 915 89.827000 1 1792 3 chr6D.!!$R2 1791
2 TraesCS6A01G416000 chr6D 470574641 470575459 818 True 359.000000 544 95.233333 1879 2764 3 chr6D.!!$R1 885
3 TraesCS6A01G416000 chr6B 720558672 720560946 2274 False 328.333333 479 88.734500 5 2762 6 chr6B.!!$F1 2757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
904 1176 0.105224 TTGTGCTTCGTCCCGAAAGA 59.895 50.0 0.47 0.0 45.23 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1777 2201 0.03601 AGCTAGCGTTGCTGAATGGT 60.036 50.0 9.55 0.0 40.1 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 2.879103 TCCATCCTTGAGTTTGGTCC 57.121 50.000 0.00 0.00 0.00 4.46
152 153 2.407090 GCAAGCCTACCAAAAAGCAAG 58.593 47.619 0.00 0.00 0.00 4.01
153 154 2.407090 CAAGCCTACCAAAAAGCAAGC 58.593 47.619 0.00 0.00 0.00 4.01
154 155 1.703411 AGCCTACCAAAAAGCAAGCA 58.297 45.000 0.00 0.00 0.00 3.91
155 156 1.615392 AGCCTACCAAAAAGCAAGCAG 59.385 47.619 0.00 0.00 0.00 4.24
179 180 1.596496 TGGGGATTTCCTCCTCTTCC 58.404 55.000 0.00 0.00 45.90 3.46
180 181 1.082879 TGGGGATTTCCTCCTCTTCCT 59.917 52.381 0.00 0.00 45.90 3.36
181 182 1.771854 GGGGATTTCCTCCTCTTCCTC 59.228 57.143 0.00 0.00 41.91 3.71
186 187 4.100963 GGATTTCCTCCTCTTCCTCTTCTC 59.899 50.000 0.00 0.00 41.29 2.87
192 212 2.024464 TCCTCTTCCTCTTCTCCCTCTG 60.024 54.545 0.00 0.00 0.00 3.35
199 219 1.206849 CTCTTCTCCCTCTGCTGAACC 59.793 57.143 0.00 0.00 0.00 3.62
200 220 1.203237 TCTTCTCCCTCTGCTGAACCT 60.203 52.381 0.00 0.00 0.00 3.50
201 221 1.627834 CTTCTCCCTCTGCTGAACCTT 59.372 52.381 0.00 0.00 0.00 3.50
202 222 1.270907 TCTCCCTCTGCTGAACCTTC 58.729 55.000 0.00 0.00 0.00 3.46
203 223 0.251634 CTCCCTCTGCTGAACCTTCC 59.748 60.000 0.00 0.00 0.00 3.46
204 224 0.178891 TCCCTCTGCTGAACCTTCCT 60.179 55.000 0.00 0.00 0.00 3.36
205 225 0.695347 CCCTCTGCTGAACCTTCCTT 59.305 55.000 0.00 0.00 0.00 3.36
218 238 2.376855 ACCTTCCTTCCTTCCTTCCTTG 59.623 50.000 0.00 0.00 0.00 3.61
228 248 1.078848 CCTTCCTTGTCGCCCTCTG 60.079 63.158 0.00 0.00 0.00 3.35
230 250 2.454832 CTTCCTTGTCGCCCTCTGCA 62.455 60.000 0.00 0.00 41.33 4.41
241 261 1.335882 CCCTCTGCATCCTCTCAGCA 61.336 60.000 0.00 0.00 36.72 4.41
242 262 0.759959 CCTCTGCATCCTCTCAGCAT 59.240 55.000 0.00 0.00 37.68 3.79
243 263 1.270412 CCTCTGCATCCTCTCAGCATC 60.270 57.143 0.00 0.00 37.68 3.91
244 264 1.689813 CTCTGCATCCTCTCAGCATCT 59.310 52.381 0.00 0.00 37.68 2.90
245 265 1.413077 TCTGCATCCTCTCAGCATCTG 59.587 52.381 0.00 0.00 37.68 2.90
254 310 3.430651 CCTCTCAGCATCTGTCTTCTTCC 60.431 52.174 0.00 0.00 32.61 3.46
256 312 3.837146 TCTCAGCATCTGTCTTCTTCCTT 59.163 43.478 0.00 0.00 32.61 3.36
284 340 7.865385 TCTTCTTCTTCTTCTTCTTCTTCTTCG 59.135 37.037 0.00 0.00 0.00 3.79
285 341 5.923684 TCTTCTTCTTCTTCTTCTTCTTCGC 59.076 40.000 0.00 0.00 0.00 4.70
286 342 5.461032 TCTTCTTCTTCTTCTTCTTCGCT 57.539 39.130 0.00 0.00 0.00 4.93
287 343 5.226396 TCTTCTTCTTCTTCTTCTTCGCTG 58.774 41.667 0.00 0.00 0.00 5.18
288 344 3.321497 TCTTCTTCTTCTTCTTCGCTGC 58.679 45.455 0.00 0.00 0.00 5.25
289 345 1.702886 TCTTCTTCTTCTTCGCTGCG 58.297 50.000 17.25 17.25 0.00 5.18
313 430 3.201290 CACGGGGATCTGATCTGAAAAG 58.799 50.000 16.61 6.20 0.00 2.27
330 447 4.040706 TGAAAAGGCTTCCGAGGTAAGTAA 59.959 41.667 0.00 0.00 0.00 2.24
343 464 4.914983 AGGTAAGTAAAAACTACCTGGCC 58.085 43.478 0.00 0.00 39.46 5.36
357 478 2.108250 ACCTGGCCGCCTGATTAATTAT 59.892 45.455 17.42 0.00 0.00 1.28
381 516 2.548057 CGCTCAGCTTGGTTTCTTGTTA 59.452 45.455 0.00 0.00 0.00 2.41
382 517 3.003275 CGCTCAGCTTGGTTTCTTGTTAA 59.997 43.478 0.00 0.00 0.00 2.01
384 519 5.106712 CGCTCAGCTTGGTTTCTTGTTAATA 60.107 40.000 0.00 0.00 0.00 0.98
412 551 6.849085 TTGCTGCCAATTATTCCTTTAGAA 57.151 33.333 0.00 0.00 39.32 2.10
413 552 6.849085 TGCTGCCAATTATTCCTTTAGAAA 57.151 33.333 0.00 0.00 38.21 2.52
471 617 5.411361 GGGTTTGTTTAATTCCTCCATTTGC 59.589 40.000 0.00 0.00 0.00 3.68
475 621 6.855763 TGTTTAATTCCTCCATTTGCTCAT 57.144 33.333 0.00 0.00 0.00 2.90
495 641 1.003839 TGTGGTTGCGTGGAGGATC 60.004 57.895 0.00 0.00 0.00 3.36
514 660 5.312120 GATCTCCATCCATGCATTCATTC 57.688 43.478 0.00 0.00 0.00 2.67
515 661 4.173290 TCTCCATCCATGCATTCATTCA 57.827 40.909 0.00 0.00 0.00 2.57
516 662 4.736473 TCTCCATCCATGCATTCATTCAT 58.264 39.130 0.00 0.00 0.00 2.57
517 663 5.883180 TCTCCATCCATGCATTCATTCATA 58.117 37.500 0.00 0.00 0.00 2.15
518 664 5.944007 TCTCCATCCATGCATTCATTCATAG 59.056 40.000 0.00 0.00 0.00 2.23
519 665 5.014202 TCCATCCATGCATTCATTCATAGG 58.986 41.667 0.00 0.00 0.00 2.57
524 670 7.875327 TCCATGCATTCATTCATAGGATATG 57.125 36.000 0.00 0.00 0.00 1.78
531 677 9.440773 GCATTCATTCATAGGATATGTGTTCTA 57.559 33.333 0.00 0.00 0.00 2.10
570 716 6.576662 ACCATATATACCGAGAGTGTTCAG 57.423 41.667 0.00 0.00 0.00 3.02
587 733 1.110442 CAGCAGTGTGTTTGGGGAAA 58.890 50.000 0.00 0.00 0.00 3.13
588 734 1.111277 AGCAGTGTGTTTGGGGAAAC 58.889 50.000 0.00 0.00 0.00 2.78
591 737 2.354203 GCAGTGTGTTTGGGGAAACAAA 60.354 45.455 2.06 0.00 43.42 2.83
592 738 3.866449 GCAGTGTGTTTGGGGAAACAAAA 60.866 43.478 2.06 0.00 43.42 2.44
593 739 3.682377 CAGTGTGTTTGGGGAAACAAAAC 59.318 43.478 2.06 4.78 43.42 2.43
597 743 5.008712 GTGTGTTTGGGGAAACAAAACAAAA 59.991 36.000 1.92 0.00 44.71 2.44
605 751 6.119536 GGGGAAACAAAACAAAAATCCTTCT 58.880 36.000 0.00 0.00 0.00 2.85
606 752 6.260050 GGGGAAACAAAACAAAAATCCTTCTC 59.740 38.462 0.00 0.00 0.00 2.87
607 753 6.821160 GGGAAACAAAACAAAAATCCTTCTCA 59.179 34.615 0.00 0.00 0.00 3.27
609 755 7.201609 GGAAACAAAACAAAAATCCTTCTCACC 60.202 37.037 0.00 0.00 0.00 4.02
610 756 6.544928 ACAAAACAAAAATCCTTCTCACCT 57.455 33.333 0.00 0.00 0.00 4.00
611 757 7.654022 ACAAAACAAAAATCCTTCTCACCTA 57.346 32.000 0.00 0.00 0.00 3.08
612 758 7.489160 ACAAAACAAAAATCCTTCTCACCTAC 58.511 34.615 0.00 0.00 0.00 3.18
613 759 7.342026 ACAAAACAAAAATCCTTCTCACCTACT 59.658 33.333 0.00 0.00 0.00 2.57
616 762 6.468543 ACAAAAATCCTTCTCACCTACTCTC 58.531 40.000 0.00 0.00 0.00 3.20
621 770 5.470047 TCCTTCTCACCTACTCTCAAAAC 57.530 43.478 0.00 0.00 0.00 2.43
624 773 5.641209 CCTTCTCACCTACTCTCAAAACATG 59.359 44.000 0.00 0.00 0.00 3.21
630 779 3.686726 CCTACTCTCAAAACATGCAGGTC 59.313 47.826 3.65 0.00 0.00 3.85
633 782 3.144506 CTCTCAAAACATGCAGGTCTGT 58.855 45.455 3.65 0.00 0.00 3.41
634 783 2.880268 TCTCAAAACATGCAGGTCTGTG 59.120 45.455 3.65 6.85 0.00 3.66
635 784 1.955778 TCAAAACATGCAGGTCTGTGG 59.044 47.619 3.65 0.00 0.00 4.17
644 793 2.171840 GCAGGTCTGTGGAGAAGAGTA 58.828 52.381 0.00 0.00 0.00 2.59
760 965 3.571590 AGACCAAATGCCCTTTGTTGTA 58.428 40.909 7.75 0.00 42.29 2.41
761 966 4.159557 AGACCAAATGCCCTTTGTTGTAT 58.840 39.130 7.75 0.00 42.29 2.29
768 973 4.799564 TGCCCTTTGTTGTATTCCATTC 57.200 40.909 0.00 0.00 0.00 2.67
769 974 4.415596 TGCCCTTTGTTGTATTCCATTCT 58.584 39.130 0.00 0.00 0.00 2.40
772 977 6.183361 TGCCCTTTGTTGTATTCCATTCTTTT 60.183 34.615 0.00 0.00 0.00 2.27
775 980 7.930865 CCCTTTGTTGTATTCCATTCTTTTCAA 59.069 33.333 0.00 0.00 0.00 2.69
779 984 9.528018 TTGTTGTATTCCATTCTTTTCAAAGTC 57.472 29.630 0.00 0.00 37.31 3.01
780 985 8.912988 TGTTGTATTCCATTCTTTTCAAAGTCT 58.087 29.630 0.00 0.00 37.31 3.24
787 992 9.965824 TTCCATTCTTTTCAAAGTCTATTTGTC 57.034 29.630 0.00 0.00 37.31 3.18
788 993 9.130661 TCCATTCTTTTCAAAGTCTATTTGTCA 57.869 29.630 0.00 0.00 37.31 3.58
789 994 9.185192 CCATTCTTTTCAAAGTCTATTTGTCAC 57.815 33.333 0.00 0.00 37.31 3.67
790 995 8.895845 CATTCTTTTCAAAGTCTATTTGTCACG 58.104 33.333 0.00 0.00 37.31 4.35
791 996 7.780008 TCTTTTCAAAGTCTATTTGTCACGA 57.220 32.000 0.00 0.00 37.31 4.35
792 997 7.851508 TCTTTTCAAAGTCTATTTGTCACGAG 58.148 34.615 0.00 0.00 37.31 4.18
793 998 6.539649 TTTCAAAGTCTATTTGTCACGAGG 57.460 37.500 0.00 0.00 0.00 4.63
794 999 5.209818 TCAAAGTCTATTTGTCACGAGGT 57.790 39.130 0.00 0.00 0.00 3.85
795 1000 5.227908 TCAAAGTCTATTTGTCACGAGGTC 58.772 41.667 0.00 0.00 0.00 3.85
796 1001 5.010719 TCAAAGTCTATTTGTCACGAGGTCT 59.989 40.000 0.00 0.00 0.00 3.85
797 1002 4.705337 AGTCTATTTGTCACGAGGTCTC 57.295 45.455 0.00 0.00 0.00 3.36
798 1003 3.444388 AGTCTATTTGTCACGAGGTCTCC 59.556 47.826 0.00 0.00 0.00 3.71
799 1004 2.422479 TCTATTTGTCACGAGGTCTCCG 59.578 50.000 0.00 0.00 0.00 4.63
800 1005 1.254026 ATTTGTCACGAGGTCTCCGA 58.746 50.000 0.00 0.00 0.00 4.55
801 1006 1.034356 TTTGTCACGAGGTCTCCGAA 58.966 50.000 0.00 0.00 0.00 4.30
802 1007 1.254026 TTGTCACGAGGTCTCCGAAT 58.746 50.000 0.00 0.00 0.00 3.34
803 1008 0.809385 TGTCACGAGGTCTCCGAATC 59.191 55.000 0.00 0.00 0.00 2.52
804 1009 0.809385 GTCACGAGGTCTCCGAATCA 59.191 55.000 0.00 0.00 0.00 2.57
805 1010 1.095600 TCACGAGGTCTCCGAATCAG 58.904 55.000 0.00 0.00 0.00 2.90
806 1011 0.811915 CACGAGGTCTCCGAATCAGT 59.188 55.000 0.00 0.00 0.00 3.41
807 1012 2.014857 CACGAGGTCTCCGAATCAGTA 58.985 52.381 0.00 0.00 0.00 2.74
815 1020 5.533154 AGGTCTCCGAATCAGTATCACTTAG 59.467 44.000 0.00 0.00 0.00 2.18
817 1022 6.432107 GTCTCCGAATCAGTATCACTTAGAC 58.568 44.000 0.00 0.00 0.00 2.59
818 1023 6.261381 GTCTCCGAATCAGTATCACTTAGACT 59.739 42.308 0.00 0.00 0.00 3.24
824 1029 7.433719 CGAATCAGTATCACTTAGACTTTCAGG 59.566 40.741 0.00 0.00 0.00 3.86
826 1031 7.776618 TCAGTATCACTTAGACTTTCAGGAA 57.223 36.000 0.00 0.00 0.00 3.36
827 1032 8.190326 TCAGTATCACTTAGACTTTCAGGAAA 57.810 34.615 0.00 0.00 0.00 3.13
829 1034 9.442047 CAGTATCACTTAGACTTTCAGGAAAAT 57.558 33.333 0.00 0.00 0.00 1.82
836 1041 8.097662 ACTTAGACTTTCAGGAAAATAGGAGTG 58.902 37.037 0.00 0.00 0.00 3.51
838 1043 5.310857 AGACTTTCAGGAAAATAGGAGTGGT 59.689 40.000 0.00 0.00 0.00 4.16
839 1044 6.500751 AGACTTTCAGGAAAATAGGAGTGGTA 59.499 38.462 0.00 0.00 0.00 3.25
840 1045 6.712276 ACTTTCAGGAAAATAGGAGTGGTAG 58.288 40.000 0.00 0.00 0.00 3.18
841 1046 5.693769 TTCAGGAAAATAGGAGTGGTAGG 57.306 43.478 0.00 0.00 0.00 3.18
842 1047 4.695606 TCAGGAAAATAGGAGTGGTAGGT 58.304 43.478 0.00 0.00 0.00 3.08
843 1048 5.098663 TCAGGAAAATAGGAGTGGTAGGTT 58.901 41.667 0.00 0.00 0.00 3.50
844 1049 5.189145 TCAGGAAAATAGGAGTGGTAGGTTC 59.811 44.000 0.00 0.00 0.00 3.62
845 1050 4.161754 AGGAAAATAGGAGTGGTAGGTTCG 59.838 45.833 0.00 0.00 0.00 3.95
846 1051 4.439968 GAAAATAGGAGTGGTAGGTTCGG 58.560 47.826 0.00 0.00 0.00 4.30
847 1052 1.411041 ATAGGAGTGGTAGGTTCGGC 58.589 55.000 0.00 0.00 0.00 5.54
848 1053 0.685458 TAGGAGTGGTAGGTTCGGCC 60.685 60.000 0.00 0.00 37.58 6.13
850 1055 1.218316 GAGTGGTAGGTTCGGCCAG 59.782 63.158 2.24 0.00 40.61 4.85
851 1056 2.436115 GTGGTAGGTTCGGCCAGC 60.436 66.667 2.24 0.00 40.61 4.85
857 1075 2.546645 TAGGTTCGGCCAGCGTTACG 62.547 60.000 2.24 0.00 40.61 3.18
860 1078 3.636313 TTCGGCCAGCGTTACGGAG 62.636 63.158 6.94 0.00 0.00 4.63
870 1088 1.336609 GCGTTACGGAGTCCTCTGTTT 60.337 52.381 13.64 0.00 46.32 2.83
873 1091 3.427863 CGTTACGGAGTCCTCTGTTTTTC 59.572 47.826 13.64 2.95 46.32 2.29
876 1094 3.729966 ACGGAGTCCTCTGTTTTTCTTC 58.270 45.455 7.77 0.00 46.32 2.87
901 1173 1.380524 TTTTTGTGCTTCGTCCCGAA 58.619 45.000 0.00 0.00 43.75 4.30
903 1175 0.941542 TTTGTGCTTCGTCCCGAAAG 59.058 50.000 0.47 0.00 45.23 2.62
904 1176 0.105224 TTGTGCTTCGTCCCGAAAGA 59.895 50.000 0.47 0.00 45.23 2.52
905 1177 0.599204 TGTGCTTCGTCCCGAAAGAC 60.599 55.000 0.47 1.51 45.23 3.01
910 1182 2.997986 GCTTCGTCCCGAAAGACAAATA 59.002 45.455 0.47 0.00 45.23 1.40
917 1189 6.091713 TCGTCCCGAAAGACAAATAATTCTTC 59.908 38.462 0.00 0.00 36.52 2.87
919 1191 7.414098 CGTCCCGAAAGACAAATAATTCTTCAT 60.414 37.037 0.00 0.00 36.52 2.57
920 1192 8.244113 GTCCCGAAAGACAAATAATTCTTCATT 58.756 33.333 0.00 0.00 36.73 2.57
936 1218 4.288105 TCTTCATTCTTCTTCTTCCAGGCT 59.712 41.667 0.00 0.00 0.00 4.58
938 1220 2.191128 TTCTTCTTCTTCCAGGCTGC 57.809 50.000 9.56 0.00 0.00 5.25
939 1221 1.356124 TCTTCTTCTTCCAGGCTGCT 58.644 50.000 9.56 0.00 0.00 4.24
942 1224 1.283347 TCTTCTTCCAGGCTGCTCAT 58.717 50.000 9.56 0.00 0.00 2.90
950 1232 1.065926 CCAGGCTGCTCATACAAGTCA 60.066 52.381 9.56 0.00 0.00 3.41
952 1234 2.676839 CAGGCTGCTCATACAAGTCAAG 59.323 50.000 0.00 0.00 0.00 3.02
953 1235 2.304180 AGGCTGCTCATACAAGTCAAGT 59.696 45.455 0.00 0.00 0.00 3.16
955 1237 2.417933 GCTGCTCATACAAGTCAAGTGG 59.582 50.000 0.00 0.00 0.00 4.00
968 1259 2.239654 GTCAAGTGGATCCATCTTGGGA 59.760 50.000 33.25 22.91 42.21 4.37
975 1270 0.833287 ATCCATCTTGGGACCTGTCG 59.167 55.000 0.00 0.00 40.44 4.35
976 1271 1.450312 CCATCTTGGGACCTGTCGC 60.450 63.158 7.35 7.35 42.16 5.19
990 1285 4.829518 TCGCGTCGTGCTGATCGG 62.830 66.667 5.77 0.00 43.27 4.18
995 1302 4.492160 TCGTGCTGATCGGCCGAC 62.492 66.667 33.75 23.91 32.95 4.79
1047 1354 2.203167 CAGAGCCTGCGCATCCAT 60.203 61.111 12.24 0.00 37.52 3.41
1049 1356 3.344215 GAGCCTGCGCATCCATCG 61.344 66.667 12.24 0.00 37.52 3.84
1075 1382 4.230002 ACCACCACCACCACGACG 62.230 66.667 0.00 0.00 0.00 5.12
1077 1384 2.964925 CACCACCACCACGACGTG 60.965 66.667 21.02 21.02 0.00 4.49
1079 1389 2.660552 CCACCACCACGACGTGTC 60.661 66.667 25.18 0.00 31.47 3.67
1082 1392 1.006571 ACCACCACGACGTGTCATC 60.007 57.895 25.18 0.00 31.47 2.92
1092 1402 1.709760 CGTGTCATCATGTCCACGC 59.290 57.895 15.97 0.18 43.26 5.34
1117 1427 3.200593 GCTCAGGCCATGTCGCAG 61.201 66.667 5.01 0.00 0.00 5.18
1119 1429 1.376424 CTCAGGCCATGTCGCAGTT 60.376 57.895 5.01 0.00 0.00 3.16
1123 1433 0.676782 AGGCCATGTCGCAGTTAACC 60.677 55.000 5.01 0.00 0.00 2.85
1125 1435 0.676782 GCCATGTCGCAGTTAACCCT 60.677 55.000 0.88 0.00 0.00 4.34
1132 1442 2.429610 GTCGCAGTTAACCCTCATCCTA 59.570 50.000 0.88 0.00 0.00 2.94
1133 1443 2.693591 TCGCAGTTAACCCTCATCCTAG 59.306 50.000 0.88 0.00 0.00 3.02
1134 1444 2.803492 CGCAGTTAACCCTCATCCTAGC 60.803 54.545 0.88 0.00 0.00 3.42
1136 1446 3.181450 GCAGTTAACCCTCATCCTAGCAT 60.181 47.826 0.88 0.00 0.00 3.79
1137 1447 4.384056 CAGTTAACCCTCATCCTAGCATG 58.616 47.826 0.88 0.00 0.00 4.06
1148 1461 1.053264 CCTAGCATGACCAGGAGGCT 61.053 60.000 0.00 0.00 39.06 4.58
1149 1462 0.835941 CTAGCATGACCAGGAGGCTT 59.164 55.000 0.00 0.00 39.06 4.35
1155 1468 1.734655 TGACCAGGAGGCTTTCTTCT 58.265 50.000 0.00 0.00 39.06 2.85
1156 1469 2.902608 TGACCAGGAGGCTTTCTTCTA 58.097 47.619 0.00 0.00 39.06 2.10
1170 1483 1.379443 TTCTAGCTCCTTCCGCCGA 60.379 57.895 0.00 0.00 0.00 5.54
1232 1554 3.467119 CGGCAAAGACGACGACGG 61.467 66.667 12.58 0.00 44.46 4.79
1287 1609 2.027745 AGACGACGAGGAGGTACACTAA 60.028 50.000 0.00 0.00 0.00 2.24
1288 1610 2.941720 GACGACGAGGAGGTACACTAAT 59.058 50.000 0.00 0.00 0.00 1.73
1289 1611 2.941720 ACGACGAGGAGGTACACTAATC 59.058 50.000 0.00 0.00 0.00 1.75
1290 1612 3.204526 CGACGAGGAGGTACACTAATCT 58.795 50.000 0.00 0.00 0.00 2.40
1291 1613 3.248125 CGACGAGGAGGTACACTAATCTC 59.752 52.174 0.00 0.00 0.00 2.75
1293 1615 4.857679 ACGAGGAGGTACACTAATCTCTT 58.142 43.478 0.00 0.00 0.00 2.85
1294 1616 4.641094 ACGAGGAGGTACACTAATCTCTTG 59.359 45.833 0.00 0.00 0.00 3.02
1296 1618 5.125739 CGAGGAGGTACACTAATCTCTTGTT 59.874 44.000 0.00 0.00 0.00 2.83
1297 1619 6.532988 AGGAGGTACACTAATCTCTTGTTC 57.467 41.667 0.00 0.00 0.00 3.18
1298 1620 6.017192 AGGAGGTACACTAATCTCTTGTTCA 58.983 40.000 0.00 0.00 0.00 3.18
1299 1621 6.071278 AGGAGGTACACTAATCTCTTGTTCAC 60.071 42.308 0.00 0.00 0.00 3.18
1300 1622 5.710984 AGGTACACTAATCTCTTGTTCACG 58.289 41.667 0.00 0.00 0.00 4.35
1301 1623 5.243283 AGGTACACTAATCTCTTGTTCACGT 59.757 40.000 0.00 0.00 0.00 4.49
1302 1624 5.572126 GGTACACTAATCTCTTGTTCACGTC 59.428 44.000 0.00 0.00 0.00 4.34
1304 1626 4.023450 ACACTAATCTCTTGTTCACGTCGA 60.023 41.667 0.00 0.00 0.00 4.20
1329 1662 2.948720 GCTGACGAACAGGGGAGCT 61.949 63.158 13.82 0.00 45.82 4.09
1762 2186 4.201657 TCCGACGAATGGATCTACAAGTA 58.798 43.478 0.00 0.00 0.00 2.24
1763 2187 4.275196 TCCGACGAATGGATCTACAAGTAG 59.725 45.833 0.00 0.77 34.56 2.57
1764 2188 4.036498 CCGACGAATGGATCTACAAGTAGT 59.964 45.833 7.09 0.00 34.84 2.73
1766 2190 5.220796 CGACGAATGGATCTACAAGTAGTCA 60.221 44.000 7.09 5.49 34.84 3.41
1767 2191 6.525578 ACGAATGGATCTACAAGTAGTCAA 57.474 37.500 7.09 0.00 34.84 3.18
1768 2192 7.113658 ACGAATGGATCTACAAGTAGTCAAT 57.886 36.000 7.09 1.83 34.84 2.57
1769 2193 8.234136 ACGAATGGATCTACAAGTAGTCAATA 57.766 34.615 7.09 0.00 34.84 1.90
1770 2194 8.692710 ACGAATGGATCTACAAGTAGTCAATAA 58.307 33.333 7.09 0.00 34.84 1.40
1771 2195 8.969267 CGAATGGATCTACAAGTAGTCAATAAC 58.031 37.037 7.09 2.74 34.84 1.89
1781 2205 7.672983 CAAGTAGTCAATAACTTGTCACCAT 57.327 36.000 6.97 0.00 44.83 3.55
1782 2206 8.099364 CAAGTAGTCAATAACTTGTCACCATT 57.901 34.615 6.97 0.00 44.83 3.16
1783 2207 7.907214 AGTAGTCAATAACTTGTCACCATTC 57.093 36.000 0.00 0.00 39.55 2.67
1784 2208 7.450074 AGTAGTCAATAACTTGTCACCATTCA 58.550 34.615 0.00 0.00 39.55 2.57
1785 2209 6.808008 AGTCAATAACTTGTCACCATTCAG 57.192 37.500 0.00 0.00 33.03 3.02
1786 2210 5.182001 AGTCAATAACTTGTCACCATTCAGC 59.818 40.000 0.00 0.00 33.03 4.26
1787 2211 5.048782 GTCAATAACTTGTCACCATTCAGCA 60.049 40.000 0.00 0.00 33.87 4.41
1788 2212 5.534278 TCAATAACTTGTCACCATTCAGCAA 59.466 36.000 0.00 0.00 33.87 3.91
1789 2213 3.715628 AACTTGTCACCATTCAGCAAC 57.284 42.857 0.00 0.00 0.00 4.17
1790 2214 1.603802 ACTTGTCACCATTCAGCAACG 59.396 47.619 0.00 0.00 0.00 4.10
1791 2215 0.310543 TTGTCACCATTCAGCAACGC 59.689 50.000 0.00 0.00 0.00 4.84
1792 2216 0.534877 TGTCACCATTCAGCAACGCT 60.535 50.000 0.00 0.00 40.77 5.07
1793 2217 1.270571 TGTCACCATTCAGCAACGCTA 60.271 47.619 0.00 0.00 36.40 4.26
1794 2218 1.394917 GTCACCATTCAGCAACGCTAG 59.605 52.381 0.00 0.00 36.40 3.42
1795 2219 0.097674 CACCATTCAGCAACGCTAGC 59.902 55.000 4.06 4.06 36.40 3.42
1796 2220 0.036010 ACCATTCAGCAACGCTAGCT 60.036 50.000 13.93 0.00 44.62 3.32
1811 2235 3.606826 GCTGCGAGCGTATGTCTC 58.393 61.111 0.00 0.00 0.00 3.36
1812 2236 1.946650 GCTGCGAGCGTATGTCTCC 60.947 63.158 0.00 0.00 0.00 3.71
1813 2237 1.655654 CTGCGAGCGTATGTCTCCG 60.656 63.158 0.00 0.00 0.00 4.63
1814 2238 2.048312 CTGCGAGCGTATGTCTCCGA 62.048 60.000 0.00 0.00 0.00 4.55
1815 2239 1.369448 GCGAGCGTATGTCTCCGAG 60.369 63.158 0.00 0.00 0.00 4.63
1816 2240 1.773054 GCGAGCGTATGTCTCCGAGA 61.773 60.000 0.00 0.00 0.00 4.04
1817 2241 0.869068 CGAGCGTATGTCTCCGAGAT 59.131 55.000 0.33 0.00 0.00 2.75
1818 2242 1.264557 CGAGCGTATGTCTCCGAGATT 59.735 52.381 0.33 0.00 0.00 2.40
1819 2243 2.663334 CGAGCGTATGTCTCCGAGATTC 60.663 54.545 0.33 0.00 0.00 2.52
1820 2244 2.290916 GAGCGTATGTCTCCGAGATTCA 59.709 50.000 0.33 0.00 0.00 2.57
1821 2245 2.887783 AGCGTATGTCTCCGAGATTCAT 59.112 45.455 0.33 4.25 0.00 2.57
1822 2246 4.072839 AGCGTATGTCTCCGAGATTCATA 58.927 43.478 0.33 3.29 0.00 2.15
1823 2247 4.519350 AGCGTATGTCTCCGAGATTCATAA 59.481 41.667 0.33 0.00 0.00 1.90
1824 2248 5.009710 AGCGTATGTCTCCGAGATTCATAAA 59.990 40.000 0.33 0.00 0.00 1.40
1825 2249 5.690409 GCGTATGTCTCCGAGATTCATAAAA 59.310 40.000 0.33 0.00 0.00 1.52
1826 2250 6.200286 GCGTATGTCTCCGAGATTCATAAAAA 59.800 38.462 0.33 0.00 0.00 1.94
1827 2251 7.095607 GCGTATGTCTCCGAGATTCATAAAAAT 60.096 37.037 0.33 0.00 0.00 1.82
1828 2252 8.428536 CGTATGTCTCCGAGATTCATAAAAATC 58.571 37.037 0.33 0.00 36.16 2.17
1829 2253 7.736447 ATGTCTCCGAGATTCATAAAAATCC 57.264 36.000 0.33 0.00 36.49 3.01
1830 2254 6.055588 TGTCTCCGAGATTCATAAAAATCCC 58.944 40.000 0.33 0.00 36.49 3.85
1831 2255 6.126768 TGTCTCCGAGATTCATAAAAATCCCT 60.127 38.462 0.33 0.00 36.49 4.20
1832 2256 6.768381 GTCTCCGAGATTCATAAAAATCCCTT 59.232 38.462 0.33 0.00 36.49 3.95
1833 2257 7.931948 GTCTCCGAGATTCATAAAAATCCCTTA 59.068 37.037 0.33 0.00 36.49 2.69
1834 2258 8.150945 TCTCCGAGATTCATAAAAATCCCTTAG 58.849 37.037 0.00 0.00 36.49 2.18
1835 2259 6.710744 TCCGAGATTCATAAAAATCCCTTAGC 59.289 38.462 0.00 0.00 36.49 3.09
1836 2260 6.712547 CCGAGATTCATAAAAATCCCTTAGCT 59.287 38.462 0.00 0.00 36.49 3.32
1837 2261 7.308229 CCGAGATTCATAAAAATCCCTTAGCTG 60.308 40.741 0.00 0.00 36.49 4.24
1838 2262 7.442364 CGAGATTCATAAAAATCCCTTAGCTGA 59.558 37.037 0.00 0.00 36.49 4.26
1839 2263 8.688747 AGATTCATAAAAATCCCTTAGCTGAG 57.311 34.615 0.00 0.00 36.49 3.35
1840 2264 6.699575 TTCATAAAAATCCCTTAGCTGAGC 57.300 37.500 0.00 0.00 0.00 4.26
1841 2265 5.754782 TCATAAAAATCCCTTAGCTGAGCA 58.245 37.500 7.39 0.00 0.00 4.26
1842 2266 5.824624 TCATAAAAATCCCTTAGCTGAGCAG 59.175 40.000 7.39 0.00 0.00 4.24
1843 2267 3.728385 AAAATCCCTTAGCTGAGCAGT 57.272 42.857 7.39 0.00 0.00 4.40
1844 2268 3.728385 AAATCCCTTAGCTGAGCAGTT 57.272 42.857 7.39 0.00 0.00 3.16
1845 2269 2.998316 ATCCCTTAGCTGAGCAGTTC 57.002 50.000 7.39 0.00 0.00 3.01
1846 2270 1.644509 TCCCTTAGCTGAGCAGTTCA 58.355 50.000 7.39 0.00 0.00 3.18
1847 2271 1.977854 TCCCTTAGCTGAGCAGTTCAA 59.022 47.619 7.39 0.00 34.81 2.69
1848 2272 2.027745 TCCCTTAGCTGAGCAGTTCAAG 60.028 50.000 7.39 1.74 34.81 3.02
1849 2273 2.354259 CCTTAGCTGAGCAGTTCAAGG 58.646 52.381 7.39 7.25 34.81 3.61
1850 2274 2.354259 CTTAGCTGAGCAGTTCAAGGG 58.646 52.381 7.39 0.00 34.81 3.95
1851 2275 0.036010 TAGCTGAGCAGTTCAAGGGC 60.036 55.000 7.39 0.00 34.81 5.19
1852 2276 1.601759 GCTGAGCAGTTCAAGGGCA 60.602 57.895 0.00 0.00 34.81 5.36
1853 2277 1.174712 GCTGAGCAGTTCAAGGGCAA 61.175 55.000 0.00 0.00 34.81 4.52
1854 2278 0.879765 CTGAGCAGTTCAAGGGCAAG 59.120 55.000 0.00 0.00 34.81 4.01
1855 2279 0.473755 TGAGCAGTTCAAGGGCAAGA 59.526 50.000 0.00 0.00 31.34 3.02
1856 2280 1.074405 TGAGCAGTTCAAGGGCAAGAT 59.926 47.619 0.00 0.00 31.34 2.40
1857 2281 2.305635 TGAGCAGTTCAAGGGCAAGATA 59.694 45.455 0.00 0.00 31.34 1.98
1858 2282 3.054139 TGAGCAGTTCAAGGGCAAGATAT 60.054 43.478 0.00 0.00 31.34 1.63
1859 2283 4.164030 TGAGCAGTTCAAGGGCAAGATATA 59.836 41.667 0.00 0.00 31.34 0.86
1860 2284 4.455606 AGCAGTTCAAGGGCAAGATATAC 58.544 43.478 0.00 0.00 0.00 1.47
1861 2285 3.248602 GCAGTTCAAGGGCAAGATATACG 59.751 47.826 0.00 0.00 0.00 3.06
1862 2286 4.693283 CAGTTCAAGGGCAAGATATACGA 58.307 43.478 0.00 0.00 0.00 3.43
1863 2287 4.508124 CAGTTCAAGGGCAAGATATACGAC 59.492 45.833 0.00 0.00 0.00 4.34
1864 2288 4.406003 AGTTCAAGGGCAAGATATACGACT 59.594 41.667 0.00 0.00 0.00 4.18
1865 2289 5.104900 AGTTCAAGGGCAAGATATACGACTT 60.105 40.000 0.00 0.00 0.00 3.01
1866 2290 4.693283 TCAAGGGCAAGATATACGACTTG 58.307 43.478 0.00 0.00 44.05 3.16
1867 2291 4.161565 TCAAGGGCAAGATATACGACTTGT 59.838 41.667 0.00 0.00 43.41 3.16
1868 2292 4.060038 AGGGCAAGATATACGACTTGTG 57.940 45.455 0.00 0.00 43.41 3.33
1869 2293 3.451178 AGGGCAAGATATACGACTTGTGT 59.549 43.478 0.00 0.00 43.41 3.72
1870 2294 4.647853 AGGGCAAGATATACGACTTGTGTA 59.352 41.667 0.00 0.00 43.41 2.90
1871 2295 5.304614 AGGGCAAGATATACGACTTGTGTAT 59.695 40.000 0.00 0.00 43.41 2.29
1872 2296 6.492429 AGGGCAAGATATACGACTTGTGTATA 59.508 38.462 0.00 0.00 43.41 1.47
1873 2297 7.014905 AGGGCAAGATATACGACTTGTGTATAA 59.985 37.037 0.00 0.00 43.41 0.98
1874 2298 7.115947 GGGCAAGATATACGACTTGTGTATAAC 59.884 40.741 0.00 0.00 43.41 1.89
1875 2299 7.149015 GGCAAGATATACGACTTGTGTATAACG 60.149 40.741 0.00 0.00 43.41 3.18
1876 2300 7.616716 GCAAGATATACGACTTGTGTATAACGC 60.617 40.741 0.00 0.00 43.41 4.84
1877 2301 7.199541 AGATATACGACTTGTGTATAACGCT 57.800 36.000 0.00 0.00 38.05 5.07
1907 2331 9.778741 TTATTCCCACTTAGCAGTATCTAATTG 57.221 33.333 0.00 0.00 32.37 2.32
1935 2359 4.022849 CAGCAAAATATACTTAGCCAGGGC 60.023 45.833 0.97 0.97 42.33 5.19
1936 2360 3.255888 GCAAAATATACTTAGCCAGGGCC 59.744 47.826 6.70 0.00 43.17 5.80
1938 2362 4.373156 AAATATACTTAGCCAGGGCCAG 57.627 45.455 6.18 6.13 43.17 4.85
1952 2376 2.825836 CCAGGCAGTGGCGATTCC 60.826 66.667 11.51 0.00 40.39 3.01
1962 2386 1.378531 TGGCGATTCCATGTGTAAGC 58.621 50.000 0.00 0.00 40.72 3.09
1963 2387 1.065491 TGGCGATTCCATGTGTAAGCT 60.065 47.619 0.00 0.00 40.72 3.74
1964 2388 1.331756 GGCGATTCCATGTGTAAGCTG 59.668 52.381 0.00 0.00 34.01 4.24
1965 2389 2.009774 GCGATTCCATGTGTAAGCTGT 58.990 47.619 0.00 0.00 0.00 4.40
1966 2390 2.223112 GCGATTCCATGTGTAAGCTGTG 60.223 50.000 0.00 0.00 0.00 3.66
1967 2391 2.352651 CGATTCCATGTGTAAGCTGTGG 59.647 50.000 0.00 0.00 0.00 4.17
1968 2392 2.198827 TTCCATGTGTAAGCTGTGGG 57.801 50.000 0.00 0.00 0.00 4.61
1969 2393 0.327924 TCCATGTGTAAGCTGTGGGG 59.672 55.000 0.00 0.00 0.00 4.96
1970 2394 0.038166 CCATGTGTAAGCTGTGGGGT 59.962 55.000 0.00 0.00 0.00 4.95
1971 2395 1.453155 CATGTGTAAGCTGTGGGGTC 58.547 55.000 0.00 0.00 0.00 4.46
1972 2396 1.064003 ATGTGTAAGCTGTGGGGTCA 58.936 50.000 0.00 0.00 0.00 4.02
1973 2397 0.107831 TGTGTAAGCTGTGGGGTCAC 59.892 55.000 0.00 0.00 43.87 3.67
1974 2398 0.605589 GTGTAAGCTGTGGGGTCACC 60.606 60.000 0.00 0.00 42.98 4.02
1975 2399 0.766674 TGTAAGCTGTGGGGTCACCT 60.767 55.000 0.00 0.00 42.98 4.00
1976 2400 0.321653 GTAAGCTGTGGGGTCACCTG 60.322 60.000 0.00 0.00 42.98 4.00
1977 2401 0.472925 TAAGCTGTGGGGTCACCTGA 60.473 55.000 0.00 0.00 42.98 3.86
1978 2402 2.032681 GCTGTGGGGTCACCTGAC 59.967 66.667 0.00 0.00 42.98 3.51
1986 2410 2.032681 GTCACCTGACCCCACAGC 59.967 66.667 0.00 0.00 39.07 4.40
1987 2411 3.249189 TCACCTGACCCCACAGCC 61.249 66.667 0.00 0.00 36.67 4.85
1988 2412 3.252284 CACCTGACCCCACAGCCT 61.252 66.667 0.00 0.00 36.67 4.58
1989 2413 2.450502 ACCTGACCCCACAGCCTT 60.451 61.111 0.00 0.00 36.67 4.35
1990 2414 2.084930 ACCTGACCCCACAGCCTTT 61.085 57.895 0.00 0.00 36.67 3.11
1991 2415 1.153756 CCTGACCCCACAGCCTTTT 59.846 57.895 0.00 0.00 36.67 2.27
1992 2416 1.181098 CCTGACCCCACAGCCTTTTG 61.181 60.000 0.00 0.00 36.67 2.44
1993 2417 1.152567 TGACCCCACAGCCTTTTGG 60.153 57.895 0.00 0.00 44.18 3.28
1994 2418 1.152830 GACCCCACAGCCTTTTGGA 59.847 57.895 0.00 0.00 44.07 3.53
1995 2419 0.251787 GACCCCACAGCCTTTTGGAT 60.252 55.000 0.00 0.00 44.07 3.41
1996 2420 0.190815 ACCCCACAGCCTTTTGGATT 59.809 50.000 0.00 0.00 44.07 3.01
1997 2421 1.351076 CCCCACAGCCTTTTGGATTT 58.649 50.000 0.00 0.00 44.07 2.17
1998 2422 1.276138 CCCCACAGCCTTTTGGATTTC 59.724 52.381 0.00 0.00 44.07 2.17
1999 2423 1.969923 CCCACAGCCTTTTGGATTTCA 59.030 47.619 0.00 0.00 44.07 2.69
2000 2424 2.368221 CCCACAGCCTTTTGGATTTCAA 59.632 45.455 0.00 0.00 44.07 2.69
2001 2425 3.555586 CCCACAGCCTTTTGGATTTCAAG 60.556 47.826 0.00 0.00 44.07 3.02
2002 2426 3.062042 CACAGCCTTTTGGATTTCAAGC 58.938 45.455 0.00 0.00 44.07 4.01
2003 2427 2.699846 ACAGCCTTTTGGATTTCAAGCA 59.300 40.909 0.00 0.00 44.07 3.91
2004 2428 3.325716 ACAGCCTTTTGGATTTCAAGCAT 59.674 39.130 0.00 0.00 44.07 3.79
2005 2429 4.527816 ACAGCCTTTTGGATTTCAAGCATA 59.472 37.500 0.00 0.00 44.07 3.14
2006 2430 5.188359 ACAGCCTTTTGGATTTCAAGCATAT 59.812 36.000 0.00 0.00 44.07 1.78
2007 2431 6.110707 CAGCCTTTTGGATTTCAAGCATATT 58.889 36.000 0.00 0.00 44.07 1.28
2008 2432 6.596497 CAGCCTTTTGGATTTCAAGCATATTT 59.404 34.615 0.00 0.00 44.07 1.40
2009 2433 6.820152 AGCCTTTTGGATTTCAAGCATATTTC 59.180 34.615 0.00 0.00 44.07 2.17
2010 2434 6.820152 GCCTTTTGGATTTCAAGCATATTTCT 59.180 34.615 0.00 0.00 44.07 2.52
2011 2435 7.981225 GCCTTTTGGATTTCAAGCATATTTCTA 59.019 33.333 0.00 0.00 44.07 2.10
2057 2481 7.801716 ACAACATTTTAGAGAGTTTAGTGCA 57.198 32.000 0.00 0.00 0.00 4.57
2058 2482 8.396272 ACAACATTTTAGAGAGTTTAGTGCAT 57.604 30.769 0.00 0.00 0.00 3.96
2059 2483 8.850156 ACAACATTTTAGAGAGTTTAGTGCATT 58.150 29.630 0.00 0.00 0.00 3.56
2060 2484 9.683069 CAACATTTTAGAGAGTTTAGTGCATTT 57.317 29.630 0.00 0.00 0.00 2.32
2061 2485 9.683069 AACATTTTAGAGAGTTTAGTGCATTTG 57.317 29.630 0.00 0.00 0.00 2.32
2062 2486 9.066892 ACATTTTAGAGAGTTTAGTGCATTTGA 57.933 29.630 0.00 0.00 0.00 2.69
2063 2487 9.897744 CATTTTAGAGAGTTTAGTGCATTTGAA 57.102 29.630 0.00 0.00 0.00 2.69
2064 2488 9.899226 ATTTTAGAGAGTTTAGTGCATTTGAAC 57.101 29.630 0.00 0.00 0.00 3.18
2065 2489 5.948992 AGAGAGTTTAGTGCATTTGAACC 57.051 39.130 0.00 0.00 0.00 3.62
2066 2490 4.762251 AGAGAGTTTAGTGCATTTGAACCC 59.238 41.667 0.00 0.00 0.00 4.11
2067 2491 4.469657 AGAGTTTAGTGCATTTGAACCCA 58.530 39.130 0.00 0.00 0.00 4.51
2068 2492 4.278419 AGAGTTTAGTGCATTTGAACCCAC 59.722 41.667 0.00 0.00 0.00 4.61
2069 2493 3.957497 AGTTTAGTGCATTTGAACCCACA 59.043 39.130 0.00 0.00 0.00 4.17
2070 2494 4.037923 AGTTTAGTGCATTTGAACCCACAG 59.962 41.667 0.00 0.00 0.00 3.66
2071 2495 0.675633 AGTGCATTTGAACCCACAGC 59.324 50.000 0.00 0.00 0.00 4.40
2072 2496 0.675633 GTGCATTTGAACCCACAGCT 59.324 50.000 0.00 0.00 0.00 4.24
2073 2497 1.069049 GTGCATTTGAACCCACAGCTT 59.931 47.619 0.00 0.00 0.00 3.74
2074 2498 1.761784 TGCATTTGAACCCACAGCTTT 59.238 42.857 0.00 0.00 0.00 3.51
2075 2499 2.170187 TGCATTTGAACCCACAGCTTTT 59.830 40.909 0.00 0.00 0.00 2.27
2076 2500 3.205338 GCATTTGAACCCACAGCTTTTT 58.795 40.909 0.00 0.00 0.00 1.94
2077 2501 3.002553 GCATTTGAACCCACAGCTTTTTG 59.997 43.478 0.00 0.00 0.00 2.44
2078 2502 2.977772 TTGAACCCACAGCTTTTTGG 57.022 45.000 0.00 0.00 0.00 3.28
2079 2503 1.859302 TGAACCCACAGCTTTTTGGT 58.141 45.000 5.29 0.00 0.00 3.67
2086 2510 3.953300 AGCTTTTTGGTGCTGGCA 58.047 50.000 0.00 0.00 38.21 4.92
2087 2511 1.442987 AGCTTTTTGGTGCTGGCAC 59.557 52.632 16.33 16.33 45.49 5.01
2108 2532 4.419921 CGTTGGGGCCAGGGGTAC 62.420 72.222 4.39 0.00 0.00 3.34
2109 2533 3.261677 GTTGGGGCCAGGGGTACA 61.262 66.667 4.39 0.00 0.00 2.90
2110 2534 2.452692 TTGGGGCCAGGGGTACAA 60.453 61.111 4.39 0.00 0.00 2.41
2111 2535 2.091924 TTGGGGCCAGGGGTACAAA 61.092 57.895 4.39 0.00 0.00 2.83
2146 2570 5.346011 AGCACAGAATTCGCATATACGTATG 59.654 40.000 18.37 6.13 40.56 2.39
2192 2623 4.198625 GCCTGCAGCAGACTACAG 57.801 61.111 24.90 6.85 42.97 2.74
2255 2686 5.948162 ACAAGTTAGAGTTGCATCATCCAAT 59.052 36.000 0.00 0.00 31.85 3.16
2344 2775 8.632679 ACAATGCAAATACCTTATTATGTGAGG 58.367 33.333 0.00 0.00 39.45 3.86
2427 2939 8.507524 AAATACTACTTATCAGGAACAAAGGC 57.492 34.615 0.00 0.00 0.00 4.35
2430 2942 5.940470 ACTACTTATCAGGAACAAAGGCAAG 59.060 40.000 0.00 0.00 0.00 4.01
2431 2943 4.729868 ACTTATCAGGAACAAAGGCAAGT 58.270 39.130 0.00 0.00 0.00 3.16
2491 3003 2.148768 CGGGTAAAAGGACTGTTCACC 58.851 52.381 0.00 0.00 0.00 4.02
2547 3059 3.688673 GCAGGATTGAGTTTTCCTCTCAG 59.311 47.826 0.00 0.00 40.44 3.35
2583 3095 6.322969 TGCTGAATTATGGAATCAAGCAATCT 59.677 34.615 0.00 0.00 39.03 2.40
2623 3135 1.946768 TGAGCAGTACAAAGGCAACAC 59.053 47.619 0.00 0.00 41.41 3.32
2630 3142 5.564651 GCAGTACAAAGGCAACACACATATT 60.565 40.000 0.00 0.00 41.41 1.28
2643 3155 5.728471 ACACACATATTGGACTTCTCTCTG 58.272 41.667 0.00 0.00 0.00 3.35
2728 3240 5.812642 ACAGAGAACAATATCTAAAGCACCG 59.187 40.000 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 153 0.033699 AGGAAATCCCCAAGCTCTGC 60.034 55.000 0.00 0.00 36.42 4.26
153 154 1.409381 GGAGGAAATCCCCAAGCTCTG 60.409 57.143 0.00 0.00 43.01 3.35
154 155 0.922626 GGAGGAAATCCCCAAGCTCT 59.077 55.000 0.00 0.00 43.01 4.09
155 156 3.503998 GGAGGAAATCCCCAAGCTC 57.496 57.895 0.00 0.00 43.01 4.09
179 180 1.206849 GGTTCAGCAGAGGGAGAAGAG 59.793 57.143 0.00 0.00 0.00 2.85
180 181 1.203237 AGGTTCAGCAGAGGGAGAAGA 60.203 52.381 0.00 0.00 0.00 2.87
181 182 1.274712 AGGTTCAGCAGAGGGAGAAG 58.725 55.000 0.00 0.00 0.00 2.85
186 187 0.695347 AAGGAAGGTTCAGCAGAGGG 59.305 55.000 0.00 0.00 0.00 4.30
192 212 1.352687 AGGAAGGAAGGAAGGTTCAGC 59.647 52.381 0.00 0.00 0.00 4.26
199 219 3.680490 GACAAGGAAGGAAGGAAGGAAG 58.320 50.000 0.00 0.00 0.00 3.46
200 220 2.038557 CGACAAGGAAGGAAGGAAGGAA 59.961 50.000 0.00 0.00 0.00 3.36
201 221 1.623811 CGACAAGGAAGGAAGGAAGGA 59.376 52.381 0.00 0.00 0.00 3.36
202 222 1.946283 GCGACAAGGAAGGAAGGAAGG 60.946 57.143 0.00 0.00 0.00 3.46
203 223 1.443802 GCGACAAGGAAGGAAGGAAG 58.556 55.000 0.00 0.00 0.00 3.46
204 224 0.036306 GGCGACAAGGAAGGAAGGAA 59.964 55.000 0.00 0.00 0.00 3.36
205 225 1.677552 GGCGACAAGGAAGGAAGGA 59.322 57.895 0.00 0.00 0.00 3.36
228 248 1.413445 AGACAGATGCTGAGAGGATGC 59.587 52.381 0.82 0.00 35.18 3.91
230 250 3.645434 AGAAGACAGATGCTGAGAGGAT 58.355 45.455 0.82 0.00 35.18 3.24
241 261 7.744733 AGAAGAAGAAAAGGAAGAAGACAGAT 58.255 34.615 0.00 0.00 0.00 2.90
242 262 7.130681 AGAAGAAGAAAAGGAAGAAGACAGA 57.869 36.000 0.00 0.00 0.00 3.41
243 263 7.714813 AGAAGAAGAAGAAAAGGAAGAAGACAG 59.285 37.037 0.00 0.00 0.00 3.51
244 264 7.569240 AGAAGAAGAAGAAAAGGAAGAAGACA 58.431 34.615 0.00 0.00 0.00 3.41
245 265 8.445275 AAGAAGAAGAAGAAAAGGAAGAAGAC 57.555 34.615 0.00 0.00 0.00 3.01
256 312 9.898152 AAGAAGAAGAAGAAGAAGAAGAAGAAA 57.102 29.630 0.00 0.00 0.00 2.52
285 341 3.842923 AGATCCCCGTGCTCGCAG 61.843 66.667 1.89 0.00 35.54 5.18
286 342 4.147449 CAGATCCCCGTGCTCGCA 62.147 66.667 1.89 0.00 35.54 5.10
287 343 3.157217 ATCAGATCCCCGTGCTCGC 62.157 63.158 1.89 0.00 35.54 5.03
288 344 1.006805 GATCAGATCCCCGTGCTCG 60.007 63.158 0.14 0.14 0.00 5.03
289 345 0.033228 CAGATCAGATCCCCGTGCTC 59.967 60.000 6.80 0.00 0.00 4.26
301 418 2.935201 CTCGGAAGCCTTTTCAGATCAG 59.065 50.000 0.00 0.00 0.00 2.90
313 430 4.321718 AGTTTTTACTTACCTCGGAAGCC 58.678 43.478 0.00 0.00 0.00 4.35
330 447 1.303317 CAGGCGGCCAGGTAGTTTT 60.303 57.895 23.09 0.00 0.00 2.43
343 464 3.745975 TGAGCGGAATAATTAATCAGGCG 59.254 43.478 3.04 0.00 0.00 5.52
357 478 0.108585 AGAAACCAAGCTGAGCGGAA 59.891 50.000 5.35 0.00 0.00 4.30
390 529 6.849085 TTTCTAAAGGAATAATTGGCAGCA 57.151 33.333 0.00 0.00 33.53 4.41
392 531 9.874205 TCAATTTTCTAAAGGAATAATTGGCAG 57.126 29.630 0.00 0.00 39.45 4.85
444 590 4.076394 TGGAGGAATTAAACAAACCCGAG 58.924 43.478 0.00 0.00 0.00 4.63
447 593 5.411361 GCAAATGGAGGAATTAAACAAACCC 59.589 40.000 0.00 0.00 0.00 4.11
471 617 0.884259 TCCACGCAACCACACATGAG 60.884 55.000 0.00 0.00 0.00 2.90
475 621 2.050836 ATCCTCCACGCAACCACACA 62.051 55.000 0.00 0.00 0.00 3.72
495 641 5.125578 CCTATGAATGAATGCATGGATGGAG 59.874 44.000 0.00 0.00 34.26 3.86
505 651 8.332996 AGAACACATATCCTATGAATGAATGC 57.667 34.615 1.33 0.00 0.00 3.56
536 682 8.372459 TCTCGGTATATATGGTACTTTTGCAAT 58.628 33.333 0.00 0.00 0.00 3.56
537 683 7.728148 TCTCGGTATATATGGTACTTTTGCAA 58.272 34.615 0.00 0.00 0.00 4.08
546 692 6.150641 GCTGAACACTCTCGGTATATATGGTA 59.849 42.308 0.00 0.00 0.00 3.25
553 699 3.128764 CACTGCTGAACACTCTCGGTATA 59.871 47.826 0.00 0.00 0.00 1.47
554 700 2.094494 CACTGCTGAACACTCTCGGTAT 60.094 50.000 0.00 0.00 0.00 2.73
555 701 1.269723 CACTGCTGAACACTCTCGGTA 59.730 52.381 0.00 0.00 0.00 4.02
556 702 0.032678 CACTGCTGAACACTCTCGGT 59.967 55.000 0.00 0.00 0.00 4.69
557 703 0.032678 ACACTGCTGAACACTCTCGG 59.967 55.000 0.00 0.00 0.00 4.63
558 704 1.135046 CACACTGCTGAACACTCTCG 58.865 55.000 0.00 0.00 0.00 4.04
570 716 0.820871 TGTTTCCCCAAACACACTGC 59.179 50.000 0.00 0.00 45.73 4.40
587 733 6.544928 AGGTGAGAAGGATTTTTGTTTTGT 57.455 33.333 0.00 0.00 0.00 2.83
588 734 7.716612 AGTAGGTGAGAAGGATTTTTGTTTTG 58.283 34.615 0.00 0.00 0.00 2.44
591 737 6.842676 AGAGTAGGTGAGAAGGATTTTTGTT 58.157 36.000 0.00 0.00 0.00 2.83
592 738 6.043243 TGAGAGTAGGTGAGAAGGATTTTTGT 59.957 38.462 0.00 0.00 0.00 2.83
593 739 6.467677 TGAGAGTAGGTGAGAAGGATTTTTG 58.532 40.000 0.00 0.00 0.00 2.44
597 743 6.043243 TGTTTTGAGAGTAGGTGAGAAGGATT 59.957 38.462 0.00 0.00 0.00 3.01
605 751 4.318332 CTGCATGTTTTGAGAGTAGGTGA 58.682 43.478 0.00 0.00 0.00 4.02
606 752 3.438087 CCTGCATGTTTTGAGAGTAGGTG 59.562 47.826 0.00 0.00 0.00 4.00
607 753 3.073062 ACCTGCATGTTTTGAGAGTAGGT 59.927 43.478 0.00 0.00 0.00 3.08
609 755 4.391216 CAGACCTGCATGTTTTGAGAGTAG 59.609 45.833 0.00 0.00 0.00 2.57
610 756 4.202357 ACAGACCTGCATGTTTTGAGAGTA 60.202 41.667 12.27 0.00 0.00 2.59
611 757 3.144506 CAGACCTGCATGTTTTGAGAGT 58.855 45.455 0.00 0.00 0.00 3.24
612 758 3.058432 CACAGACCTGCATGTTTTGAGAG 60.058 47.826 12.27 2.13 0.00 3.20
613 759 2.880268 CACAGACCTGCATGTTTTGAGA 59.120 45.455 12.27 0.00 0.00 3.27
616 762 1.955778 TCCACAGACCTGCATGTTTTG 59.044 47.619 0.00 1.50 0.00 2.44
621 770 1.277273 TCTTCTCCACAGACCTGCATG 59.723 52.381 0.00 0.00 0.00 4.06
624 773 0.972883 ACTCTTCTCCACAGACCTGC 59.027 55.000 0.00 0.00 0.00 4.85
677 882 2.034124 CAATTCTCGGAATGCCCCAAT 58.966 47.619 0.70 0.00 0.00 3.16
679 884 0.623194 TCAATTCTCGGAATGCCCCA 59.377 50.000 0.70 0.00 0.00 4.96
761 966 9.965824 GACAAATAGACTTTGAAAAGAATGGAA 57.034 29.630 9.71 0.00 39.31 3.53
768 973 7.072030 CCTCGTGACAAATAGACTTTGAAAAG 58.928 38.462 4.81 1.22 41.73 2.27
769 974 6.540914 ACCTCGTGACAAATAGACTTTGAAAA 59.459 34.615 4.81 0.00 33.83 2.29
772 977 5.010719 AGACCTCGTGACAAATAGACTTTGA 59.989 40.000 4.81 0.00 33.83 2.69
775 980 4.082136 GGAGACCTCGTGACAAATAGACTT 60.082 45.833 0.00 0.00 0.00 3.01
777 982 3.731264 CGGAGACCTCGTGACAAATAGAC 60.731 52.174 0.00 0.00 0.00 2.59
779 984 2.422479 TCGGAGACCTCGTGACAAATAG 59.578 50.000 0.00 0.00 0.00 1.73
780 985 2.439409 TCGGAGACCTCGTGACAAATA 58.561 47.619 0.00 0.00 0.00 1.40
781 986 1.254026 TCGGAGACCTCGTGACAAAT 58.746 50.000 0.00 0.00 0.00 2.32
782 987 1.034356 TTCGGAGACCTCGTGACAAA 58.966 50.000 0.00 0.00 34.32 2.83
783 988 1.201647 GATTCGGAGACCTCGTGACAA 59.798 52.381 0.00 0.00 34.32 3.18
784 989 0.809385 GATTCGGAGACCTCGTGACA 59.191 55.000 0.00 0.00 34.32 3.58
785 990 0.809385 TGATTCGGAGACCTCGTGAC 59.191 55.000 0.00 0.00 34.32 3.67
786 991 1.095600 CTGATTCGGAGACCTCGTGA 58.904 55.000 0.00 0.00 34.32 4.35
787 992 0.811915 ACTGATTCGGAGACCTCGTG 59.188 55.000 0.00 0.00 34.32 4.35
788 993 2.414994 TACTGATTCGGAGACCTCGT 57.585 50.000 0.00 0.00 34.32 4.18
789 994 2.879026 TGATACTGATTCGGAGACCTCG 59.121 50.000 0.00 0.00 34.32 4.63
790 995 3.886505 AGTGATACTGATTCGGAGACCTC 59.113 47.826 0.00 0.00 34.32 3.85
791 996 3.904717 AGTGATACTGATTCGGAGACCT 58.095 45.455 0.00 0.00 34.32 3.85
792 997 4.657436 AAGTGATACTGATTCGGAGACC 57.343 45.455 0.00 0.00 34.32 3.85
793 998 6.261381 AGTCTAAGTGATACTGATTCGGAGAC 59.739 42.308 0.00 0.00 34.32 3.36
794 999 6.358178 AGTCTAAGTGATACTGATTCGGAGA 58.642 40.000 0.00 0.00 0.00 3.71
795 1000 6.627395 AGTCTAAGTGATACTGATTCGGAG 57.373 41.667 0.00 0.00 0.00 4.63
796 1001 7.122204 TGAAAGTCTAAGTGATACTGATTCGGA 59.878 37.037 0.00 0.00 0.00 4.55
797 1002 7.258441 TGAAAGTCTAAGTGATACTGATTCGG 58.742 38.462 0.00 0.00 0.00 4.30
798 1003 7.433719 CCTGAAAGTCTAAGTGATACTGATTCG 59.566 40.741 0.00 0.00 0.00 3.34
799 1004 8.470805 TCCTGAAAGTCTAAGTGATACTGATTC 58.529 37.037 0.00 0.00 0.00 2.52
800 1005 8.367660 TCCTGAAAGTCTAAGTGATACTGATT 57.632 34.615 0.00 0.00 0.00 2.57
801 1006 7.962995 TCCTGAAAGTCTAAGTGATACTGAT 57.037 36.000 0.00 0.00 0.00 2.90
802 1007 7.776618 TTCCTGAAAGTCTAAGTGATACTGA 57.223 36.000 0.00 0.00 0.00 3.41
803 1008 8.833231 TTTTCCTGAAAGTCTAAGTGATACTG 57.167 34.615 0.00 0.00 0.00 2.74
807 1012 8.826765 TCCTATTTTCCTGAAAGTCTAAGTGAT 58.173 33.333 0.00 0.00 0.00 3.06
815 1020 5.561679 ACCACTCCTATTTTCCTGAAAGTC 58.438 41.667 0.00 0.00 0.00 3.01
817 1022 6.116126 CCTACCACTCCTATTTTCCTGAAAG 58.884 44.000 0.00 0.00 0.00 2.62
818 1023 5.550403 ACCTACCACTCCTATTTTCCTGAAA 59.450 40.000 0.00 0.00 0.00 2.69
824 1029 4.439968 CCGAACCTACCACTCCTATTTTC 58.560 47.826 0.00 0.00 0.00 2.29
826 1031 2.169978 GCCGAACCTACCACTCCTATTT 59.830 50.000 0.00 0.00 0.00 1.40
827 1032 1.761198 GCCGAACCTACCACTCCTATT 59.239 52.381 0.00 0.00 0.00 1.73
829 1034 0.685458 GGCCGAACCTACCACTCCTA 60.685 60.000 0.00 0.00 34.51 2.94
830 1035 1.988406 GGCCGAACCTACCACTCCT 60.988 63.158 0.00 0.00 34.51 3.69
831 1036 2.240162 CTGGCCGAACCTACCACTCC 62.240 65.000 0.00 0.00 40.22 3.85
832 1037 1.218316 CTGGCCGAACCTACCACTC 59.782 63.158 0.00 0.00 40.22 3.51
836 1041 2.229690 TAACGCTGGCCGAACCTACC 62.230 60.000 0.00 0.00 41.02 3.18
838 1043 1.216178 GTAACGCTGGCCGAACCTA 59.784 57.895 0.00 0.00 41.02 3.08
839 1044 2.047560 GTAACGCTGGCCGAACCT 60.048 61.111 0.00 0.00 41.02 3.50
840 1045 3.484547 CGTAACGCTGGCCGAACC 61.485 66.667 0.00 0.00 41.02 3.62
841 1046 3.484547 CCGTAACGCTGGCCGAAC 61.485 66.667 0.00 0.00 41.02 3.95
842 1047 3.636313 CTCCGTAACGCTGGCCGAA 62.636 63.158 0.00 0.00 41.02 4.30
843 1048 4.124351 CTCCGTAACGCTGGCCGA 62.124 66.667 0.00 0.00 41.02 5.54
844 1049 4.430765 ACTCCGTAACGCTGGCCG 62.431 66.667 0.00 0.00 44.21 6.13
845 1050 2.508663 GACTCCGTAACGCTGGCC 60.509 66.667 0.00 0.00 0.00 5.36
846 1051 2.508663 GGACTCCGTAACGCTGGC 60.509 66.667 0.00 0.00 0.00 4.85
847 1052 1.139095 GAGGACTCCGTAACGCTGG 59.861 63.158 0.00 0.00 0.00 4.85
848 1053 0.179161 CAGAGGACTCCGTAACGCTG 60.179 60.000 0.00 0.00 0.00 5.18
850 1055 0.243095 AACAGAGGACTCCGTAACGC 59.757 55.000 0.00 0.00 0.00 4.84
851 1056 2.719426 AAACAGAGGACTCCGTAACG 57.281 50.000 0.00 0.00 0.00 3.18
857 1075 6.701145 AAAAGAAGAAAAACAGAGGACTCC 57.299 37.500 0.00 0.00 0.00 3.85
910 1182 6.152492 GCCTGGAAGAAGAAGAATGAAGAATT 59.848 38.462 0.00 0.00 34.07 2.17
917 1189 2.422832 GCAGCCTGGAAGAAGAAGAATG 59.577 50.000 0.00 0.00 34.07 2.67
919 1191 1.701847 AGCAGCCTGGAAGAAGAAGAA 59.298 47.619 0.00 0.00 34.07 2.52
920 1192 1.277557 GAGCAGCCTGGAAGAAGAAGA 59.722 52.381 0.00 0.00 34.07 2.87
928 1210 1.630369 ACTTGTATGAGCAGCCTGGAA 59.370 47.619 0.00 0.00 0.00 3.53
936 1218 4.507710 GATCCACTTGACTTGTATGAGCA 58.492 43.478 0.00 0.00 0.00 4.26
938 1220 5.089970 TGGATCCACTTGACTTGTATGAG 57.910 43.478 11.44 0.00 0.00 2.90
939 1221 5.426509 AGATGGATCCACTTGACTTGTATGA 59.573 40.000 18.99 0.00 0.00 2.15
942 1224 5.491070 CAAGATGGATCCACTTGACTTGTA 58.509 41.667 32.17 6.80 42.12 2.41
950 1232 1.566231 GGTCCCAAGATGGATCCACTT 59.434 52.381 18.99 18.60 40.96 3.16
952 1234 1.133976 CAGGTCCCAAGATGGATCCAC 60.134 57.143 18.99 11.34 40.96 4.02
953 1235 1.216064 CAGGTCCCAAGATGGATCCA 58.784 55.000 18.88 18.88 40.96 3.41
955 1237 1.202580 CGACAGGTCCCAAGATGGATC 60.203 57.143 0.00 0.00 40.96 3.36
983 1278 2.502492 ATGGAGGTCGGCCGATCAG 61.502 63.158 38.03 4.44 40.50 2.90
990 1285 1.233019 CATTCATCATGGAGGTCGGC 58.767 55.000 0.00 0.00 0.00 5.54
991 1286 2.216046 CACATTCATCATGGAGGTCGG 58.784 52.381 0.00 0.00 37.17 4.79
995 1302 3.139850 GAGAGCACATTCATCATGGAGG 58.860 50.000 0.00 0.00 37.17 4.30
1056 1363 3.867783 TCGTGGTGGTGGTGGTGG 61.868 66.667 0.00 0.00 0.00 4.61
1065 1372 0.389817 ATGATGACACGTCGTGGTGG 60.390 55.000 27.77 4.59 42.23 4.61
1068 1375 0.992072 GACATGATGACACGTCGTGG 59.008 55.000 27.77 11.54 37.94 4.94
1075 1382 1.695893 CGGCGTGGACATGATGACAC 61.696 60.000 0.00 7.16 0.00 3.67
1077 1384 2.173669 CCGGCGTGGACATGATGAC 61.174 63.158 6.01 0.00 42.00 3.06
1079 1389 1.884464 CTCCGGCGTGGACATGATG 60.884 63.158 6.01 0.00 43.74 3.07
1104 1414 0.676782 GGTTAACTGCGACATGGCCT 60.677 55.000 3.32 0.00 0.00 5.19
1105 1415 1.654023 GGGTTAACTGCGACATGGCC 61.654 60.000 5.42 0.00 0.00 5.36
1106 1416 0.676782 AGGGTTAACTGCGACATGGC 60.677 55.000 5.42 0.00 0.00 4.40
1110 1420 1.066430 GGATGAGGGTTAACTGCGACA 60.066 52.381 5.42 0.51 0.00 4.35
1111 1421 1.207329 AGGATGAGGGTTAACTGCGAC 59.793 52.381 5.42 0.00 0.00 5.19
1117 1427 4.381411 GTCATGCTAGGATGAGGGTTAAC 58.619 47.826 25.43 10.20 32.92 2.01
1119 1429 2.972713 GGTCATGCTAGGATGAGGGTTA 59.027 50.000 25.43 2.10 32.92 2.85
1123 1433 2.835580 CTGGTCATGCTAGGATGAGG 57.164 55.000 25.43 15.07 32.92 3.86
1132 1442 0.034670 GAAAGCCTCCTGGTCATGCT 60.035 55.000 0.00 0.00 35.27 3.79
1133 1443 0.034670 AGAAAGCCTCCTGGTCATGC 60.035 55.000 0.00 0.00 35.27 4.06
1134 1444 2.026449 AGAAGAAAGCCTCCTGGTCATG 60.026 50.000 0.00 0.00 35.27 3.07
1136 1446 1.734655 AGAAGAAAGCCTCCTGGTCA 58.265 50.000 0.00 0.00 35.27 4.02
1137 1447 2.419436 GCTAGAAGAAAGCCTCCTGGTC 60.419 54.545 0.00 0.00 33.73 4.02
1148 1461 1.207329 GGCGGAAGGAGCTAGAAGAAA 59.793 52.381 0.00 0.00 34.52 2.52
1149 1462 0.824759 GGCGGAAGGAGCTAGAAGAA 59.175 55.000 0.00 0.00 34.52 2.52
1155 1468 2.833582 CCTCGGCGGAAGGAGCTA 60.834 66.667 7.21 0.00 33.16 3.32
1232 1554 3.164011 CTTGGTCGTCGTCGTCGC 61.164 66.667 7.01 2.89 38.33 5.19
1243 1565 3.305398 TCTTCGCTTCTTCTCTTGGTC 57.695 47.619 0.00 0.00 0.00 4.02
1244 1566 3.753294 TTCTTCGCTTCTTCTCTTGGT 57.247 42.857 0.00 0.00 0.00 3.67
1245 1567 4.752101 TCTTTTCTTCGCTTCTTCTCTTGG 59.248 41.667 0.00 0.00 0.00 3.61
1287 1609 2.418976 TCGATCGACGTGAACAAGAGAT 59.581 45.455 15.15 0.00 43.13 2.75
1288 1610 1.802365 TCGATCGACGTGAACAAGAGA 59.198 47.619 15.15 0.00 43.13 3.10
1289 1611 2.169974 CTCGATCGACGTGAACAAGAG 58.830 52.381 15.15 0.00 43.13 2.85
1290 1612 1.534163 ACTCGATCGACGTGAACAAGA 59.466 47.619 15.15 0.00 43.13 3.02
1291 1613 1.644295 CACTCGATCGACGTGAACAAG 59.356 52.381 28.51 14.86 43.13 3.16
1293 1615 0.728129 GCACTCGATCGACGTGAACA 60.728 55.000 32.81 9.52 43.13 3.18
1294 1616 0.454620 AGCACTCGATCGACGTGAAC 60.455 55.000 32.81 22.70 43.13 3.18
1296 1618 1.134694 CAGCACTCGATCGACGTGA 59.865 57.895 32.81 11.36 43.13 4.35
1297 1619 1.128724 GTCAGCACTCGATCGACGTG 61.129 60.000 28.28 28.28 43.13 4.49
1298 1620 1.134901 GTCAGCACTCGATCGACGT 59.865 57.895 15.15 13.53 43.13 4.34
1299 1621 1.930188 CGTCAGCACTCGATCGACG 60.930 63.158 15.15 11.27 42.79 5.12
1300 1622 0.179197 TTCGTCAGCACTCGATCGAC 60.179 55.000 15.15 4.76 36.01 4.20
1301 1623 0.179197 GTTCGTCAGCACTCGATCGA 60.179 55.000 18.32 18.32 36.01 3.59
1302 1624 0.454452 TGTTCGTCAGCACTCGATCG 60.454 55.000 9.36 9.36 36.01 3.69
1304 1626 0.109086 CCTGTTCGTCAGCACTCGAT 60.109 55.000 0.00 0.00 42.38 3.59
1329 1662 0.678950 TGCAATCGACCACTCAGTCA 59.321 50.000 0.00 0.00 36.52 3.41
1412 1753 2.870161 CTGAAGCCGTCGTCGTCG 60.870 66.667 4.87 4.87 38.55 5.12
1771 2195 3.954836 AGCGTTGCTGAATGGTGACAAG 61.955 50.000 0.00 0.00 40.56 3.16
1772 2196 2.084625 AGCGTTGCTGAATGGTGACAA 61.085 47.619 0.00 0.00 40.56 3.18
1773 2197 0.534877 AGCGTTGCTGAATGGTGACA 60.535 50.000 0.00 0.00 41.27 3.58
1774 2198 1.394917 CTAGCGTTGCTGAATGGTGAC 59.605 52.381 0.70 0.00 40.10 3.67
1775 2199 1.725641 CTAGCGTTGCTGAATGGTGA 58.274 50.000 0.70 0.00 40.10 4.02
1776 2200 0.097674 GCTAGCGTTGCTGAATGGTG 59.902 55.000 0.00 0.00 40.10 4.17
1777 2201 0.036010 AGCTAGCGTTGCTGAATGGT 60.036 50.000 9.55 0.00 40.10 3.55
1778 2202 2.772739 AGCTAGCGTTGCTGAATGG 58.227 52.632 9.55 0.00 40.10 3.16
1790 2214 1.272114 GACATACGCTCGCAGCTAGC 61.272 60.000 6.62 6.62 39.60 3.42
1791 2215 0.309302 AGACATACGCTCGCAGCTAG 59.691 55.000 6.58 0.00 39.60 3.42
1792 2216 0.308068 GAGACATACGCTCGCAGCTA 59.692 55.000 6.58 0.33 39.60 3.32
1793 2217 1.064946 GAGACATACGCTCGCAGCT 59.935 57.895 6.58 0.00 39.60 4.24
1794 2218 1.946650 GGAGACATACGCTCGCAGC 60.947 63.158 0.00 0.00 38.02 5.25
1795 2219 1.655654 CGGAGACATACGCTCGCAG 60.656 63.158 0.00 0.00 33.19 5.18
1796 2220 2.048312 CTCGGAGACATACGCTCGCA 62.048 60.000 0.00 0.00 33.19 5.10
1797 2221 1.369448 CTCGGAGACATACGCTCGC 60.369 63.158 0.00 0.00 33.19 5.03
1798 2222 0.869068 ATCTCGGAGACATACGCTCG 59.131 55.000 10.41 0.00 33.19 5.03
1799 2223 2.290916 TGAATCTCGGAGACATACGCTC 59.709 50.000 10.41 0.05 30.59 5.03
1800 2224 2.298610 TGAATCTCGGAGACATACGCT 58.701 47.619 10.41 0.00 30.59 5.07
1801 2225 2.776312 TGAATCTCGGAGACATACGC 57.224 50.000 10.41 0.00 30.59 4.42
1802 2226 7.694388 TTTTTATGAATCTCGGAGACATACG 57.306 36.000 10.41 0.00 0.00 3.06
1803 2227 8.713271 GGATTTTTATGAATCTCGGAGACATAC 58.287 37.037 10.41 3.12 36.50 2.39
1804 2228 7.878127 GGGATTTTTATGAATCTCGGAGACATA 59.122 37.037 10.41 11.41 36.50 2.29
1805 2229 6.712547 GGGATTTTTATGAATCTCGGAGACAT 59.287 38.462 10.41 12.38 36.50 3.06
1806 2230 6.055588 GGGATTTTTATGAATCTCGGAGACA 58.944 40.000 10.41 5.29 36.50 3.41
1807 2231 6.292150 AGGGATTTTTATGAATCTCGGAGAC 58.708 40.000 10.41 0.00 40.64 3.36
1808 2232 6.500589 AGGGATTTTTATGAATCTCGGAGA 57.499 37.500 10.62 10.62 40.64 3.71
1809 2233 7.095017 GCTAAGGGATTTTTATGAATCTCGGAG 60.095 40.741 0.00 0.00 40.64 4.63
1810 2234 6.710744 GCTAAGGGATTTTTATGAATCTCGGA 59.289 38.462 0.00 0.00 40.64 4.55
1811 2235 6.712547 AGCTAAGGGATTTTTATGAATCTCGG 59.287 38.462 0.00 0.00 40.64 4.63
1812 2236 7.442364 TCAGCTAAGGGATTTTTATGAATCTCG 59.558 37.037 0.00 0.00 40.64 4.04
1813 2237 8.682936 TCAGCTAAGGGATTTTTATGAATCTC 57.317 34.615 0.00 0.00 36.88 2.75
1814 2238 7.230309 GCTCAGCTAAGGGATTTTTATGAATCT 59.770 37.037 0.00 0.00 36.50 2.40
1815 2239 7.013655 TGCTCAGCTAAGGGATTTTTATGAATC 59.986 37.037 0.00 0.00 35.71 2.52
1816 2240 6.835488 TGCTCAGCTAAGGGATTTTTATGAAT 59.165 34.615 0.00 0.00 0.00 2.57
1817 2241 6.186957 TGCTCAGCTAAGGGATTTTTATGAA 58.813 36.000 0.00 0.00 0.00 2.57
1818 2242 5.754782 TGCTCAGCTAAGGGATTTTTATGA 58.245 37.500 0.00 0.00 0.00 2.15
1819 2243 5.591877 ACTGCTCAGCTAAGGGATTTTTATG 59.408 40.000 0.00 0.00 0.00 1.90
1820 2244 5.760131 ACTGCTCAGCTAAGGGATTTTTAT 58.240 37.500 0.00 0.00 0.00 1.40
1821 2245 5.179452 ACTGCTCAGCTAAGGGATTTTTA 57.821 39.130 0.00 0.00 0.00 1.52
1822 2246 4.039603 ACTGCTCAGCTAAGGGATTTTT 57.960 40.909 0.00 0.00 0.00 1.94
1823 2247 3.728385 ACTGCTCAGCTAAGGGATTTT 57.272 42.857 0.00 0.00 0.00 1.82
1824 2248 3.009473 TGAACTGCTCAGCTAAGGGATTT 59.991 43.478 0.00 0.00 0.00 2.17
1825 2249 2.573462 TGAACTGCTCAGCTAAGGGATT 59.427 45.455 0.00 0.00 0.00 3.01
1826 2250 2.191400 TGAACTGCTCAGCTAAGGGAT 58.809 47.619 0.00 0.00 0.00 3.85
1827 2251 1.644509 TGAACTGCTCAGCTAAGGGA 58.355 50.000 0.00 0.00 0.00 4.20
1828 2252 2.354259 CTTGAACTGCTCAGCTAAGGG 58.646 52.381 0.00 0.00 34.81 3.95
1829 2253 2.354259 CCTTGAACTGCTCAGCTAAGG 58.646 52.381 0.00 10.74 34.81 2.69
1830 2254 2.354259 CCCTTGAACTGCTCAGCTAAG 58.646 52.381 0.00 0.00 34.81 2.18
1831 2255 1.611673 GCCCTTGAACTGCTCAGCTAA 60.612 52.381 0.00 0.00 34.81 3.09
1832 2256 0.036010 GCCCTTGAACTGCTCAGCTA 60.036 55.000 0.00 0.00 34.81 3.32
1833 2257 1.303155 GCCCTTGAACTGCTCAGCT 60.303 57.895 0.00 0.00 34.81 4.24
1834 2258 1.174712 TTGCCCTTGAACTGCTCAGC 61.175 55.000 0.00 0.00 34.81 4.26
1835 2259 0.879765 CTTGCCCTTGAACTGCTCAG 59.120 55.000 0.00 0.00 34.81 3.35
1836 2260 0.473755 TCTTGCCCTTGAACTGCTCA 59.526 50.000 0.00 0.00 0.00 4.26
1837 2261 1.831580 ATCTTGCCCTTGAACTGCTC 58.168 50.000 0.00 0.00 0.00 4.26
1838 2262 3.659183 ATATCTTGCCCTTGAACTGCT 57.341 42.857 0.00 0.00 0.00 4.24
1839 2263 3.248602 CGTATATCTTGCCCTTGAACTGC 59.751 47.826 0.00 0.00 0.00 4.40
1840 2264 4.508124 GTCGTATATCTTGCCCTTGAACTG 59.492 45.833 0.00 0.00 0.00 3.16
1841 2265 4.406003 AGTCGTATATCTTGCCCTTGAACT 59.594 41.667 0.00 0.00 0.00 3.01
1842 2266 4.694339 AGTCGTATATCTTGCCCTTGAAC 58.306 43.478 0.00 0.00 0.00 3.18
1843 2267 5.116180 CAAGTCGTATATCTTGCCCTTGAA 58.884 41.667 0.00 0.00 35.42 2.69
1844 2268 4.161565 ACAAGTCGTATATCTTGCCCTTGA 59.838 41.667 0.00 0.00 43.05 3.02
1845 2269 4.271049 CACAAGTCGTATATCTTGCCCTTG 59.729 45.833 12.13 0.00 43.05 3.61
1846 2270 4.081087 ACACAAGTCGTATATCTTGCCCTT 60.081 41.667 12.13 0.00 43.05 3.95
1847 2271 3.451178 ACACAAGTCGTATATCTTGCCCT 59.549 43.478 12.13 0.00 43.05 5.19
1848 2272 3.793559 ACACAAGTCGTATATCTTGCCC 58.206 45.455 12.13 0.00 43.05 5.36
1849 2273 7.149015 CGTTATACACAAGTCGTATATCTTGCC 60.149 40.741 12.13 0.00 43.05 4.52
1850 2274 7.616716 GCGTTATACACAAGTCGTATATCTTGC 60.617 40.741 12.13 0.00 43.05 4.01
1851 2275 7.590322 AGCGTTATACACAAGTCGTATATCTTG 59.410 37.037 11.20 11.20 44.29 3.02
1852 2276 7.646314 AGCGTTATACACAAGTCGTATATCTT 58.354 34.615 0.00 0.00 33.10 2.40
1853 2277 7.199541 AGCGTTATACACAAGTCGTATATCT 57.800 36.000 0.00 0.00 33.10 1.98
1854 2278 7.149015 CCAAGCGTTATACACAAGTCGTATATC 60.149 40.741 0.00 0.00 33.10 1.63
1855 2279 6.639686 CCAAGCGTTATACACAAGTCGTATAT 59.360 38.462 0.00 0.00 33.10 0.86
1856 2280 5.972973 CCAAGCGTTATACACAAGTCGTATA 59.027 40.000 0.00 0.00 32.01 1.47
1857 2281 4.802039 CCAAGCGTTATACACAAGTCGTAT 59.198 41.667 0.00 0.00 34.08 3.06
1858 2282 4.168014 CCAAGCGTTATACACAAGTCGTA 58.832 43.478 0.00 0.00 0.00 3.43
1859 2283 2.991190 CCAAGCGTTATACACAAGTCGT 59.009 45.455 0.00 0.00 0.00 4.34
1860 2284 2.991190 ACCAAGCGTTATACACAAGTCG 59.009 45.455 0.00 0.00 0.00 4.18
1861 2285 6.657836 ATAACCAAGCGTTATACACAAGTC 57.342 37.500 0.00 0.00 44.29 3.01
1862 2286 6.093082 GGAATAACCAAGCGTTATACACAAGT 59.907 38.462 0.00 0.00 45.17 3.16
1863 2287 6.457799 GGGAATAACCAAGCGTTATACACAAG 60.458 42.308 0.00 0.00 45.17 3.16
1864 2288 5.354792 GGGAATAACCAAGCGTTATACACAA 59.645 40.000 0.00 0.00 45.17 3.33
1865 2289 4.877251 GGGAATAACCAAGCGTTATACACA 59.123 41.667 0.00 0.00 45.17 3.72
1866 2290 4.877251 TGGGAATAACCAAGCGTTATACAC 59.123 41.667 0.00 0.00 45.17 2.90
1867 2291 4.877251 GTGGGAATAACCAAGCGTTATACA 59.123 41.667 0.00 0.00 45.17 2.29
1868 2292 5.121105 AGTGGGAATAACCAAGCGTTATAC 58.879 41.667 0.00 0.00 45.17 1.47
1869 2293 5.362105 AGTGGGAATAACCAAGCGTTATA 57.638 39.130 0.00 0.00 45.17 0.98
1871 2295 3.706600 AGTGGGAATAACCAAGCGTTA 57.293 42.857 0.00 0.00 43.34 3.18
1872 2296 2.579410 AGTGGGAATAACCAAGCGTT 57.421 45.000 0.00 0.00 43.34 4.84
1873 2297 2.579410 AAGTGGGAATAACCAAGCGT 57.421 45.000 0.00 0.00 43.34 5.07
1874 2298 2.354821 GCTAAGTGGGAATAACCAAGCG 59.645 50.000 0.00 0.00 43.34 4.68
1875 2299 3.352648 TGCTAAGTGGGAATAACCAAGC 58.647 45.455 0.00 0.00 43.34 4.01
1876 2300 4.589908 ACTGCTAAGTGGGAATAACCAAG 58.410 43.478 0.00 0.00 43.34 3.61
1877 2301 4.650972 ACTGCTAAGTGGGAATAACCAA 57.349 40.909 0.00 0.00 43.34 3.67
1907 2331 5.588648 TGGCTAAGTATATTTTGCTGTGGTC 59.411 40.000 12.58 0.00 0.00 4.02
1935 2359 2.825836 GGAATCGCCACTGCCTGG 60.826 66.667 0.00 0.00 44.08 4.45
1936 2360 2.046023 TGGAATCGCCACTGCCTG 60.046 61.111 0.00 0.00 43.33 4.85
1944 2368 1.331756 CAGCTTACACATGGAATCGCC 59.668 52.381 0.00 0.00 37.10 5.54
1945 2369 2.009774 ACAGCTTACACATGGAATCGC 58.990 47.619 0.00 0.00 0.00 4.58
1946 2370 2.352651 CCACAGCTTACACATGGAATCG 59.647 50.000 0.00 0.00 31.69 3.34
1947 2371 2.684881 CCCACAGCTTACACATGGAATC 59.315 50.000 0.00 0.00 31.69 2.52
1949 2373 1.271871 CCCCACAGCTTACACATGGAA 60.272 52.381 0.00 0.00 31.69 3.53
1951 2375 0.038166 ACCCCACAGCTTACACATGG 59.962 55.000 0.00 0.00 0.00 3.66
1952 2376 1.271325 TGACCCCACAGCTTACACATG 60.271 52.381 0.00 0.00 0.00 3.21
1956 2380 0.766674 AGGTGACCCCACAGCTTACA 60.767 55.000 0.00 0.00 44.52 2.41
1958 2382 0.472925 TCAGGTGACCCCACAGCTTA 60.473 55.000 0.00 0.00 44.52 3.09
1959 2383 1.770110 TCAGGTGACCCCACAGCTT 60.770 57.895 0.00 0.00 44.52 3.74
1961 2385 2.032681 GTCAGGTGACCCCACAGC 59.967 66.667 0.00 0.00 44.93 4.40
1969 2393 2.032681 GCTGTGGGGTCAGGTGAC 59.967 66.667 1.17 1.17 44.04 3.67
1970 2394 3.249189 GGCTGTGGGGTCAGGTGA 61.249 66.667 0.00 0.00 36.12 4.02
1971 2395 2.357593 AAAGGCTGTGGGGTCAGGTG 62.358 60.000 0.00 0.00 36.12 4.00
1972 2396 1.655114 AAAAGGCTGTGGGGTCAGGT 61.655 55.000 0.00 0.00 36.12 4.00
1973 2397 1.153756 AAAAGGCTGTGGGGTCAGG 59.846 57.895 0.00 0.00 36.12 3.86
1974 2398 1.181098 CCAAAAGGCTGTGGGGTCAG 61.181 60.000 9.20 0.00 38.35 3.51
1975 2399 1.152567 CCAAAAGGCTGTGGGGTCA 60.153 57.895 9.20 0.00 0.00 4.02
1976 2400 0.251787 ATCCAAAAGGCTGTGGGGTC 60.252 55.000 15.47 0.00 35.46 4.46
1977 2401 0.190815 AATCCAAAAGGCTGTGGGGT 59.809 50.000 15.47 0.00 35.46 4.95
1978 2402 1.276138 GAAATCCAAAAGGCTGTGGGG 59.724 52.381 15.47 3.76 35.46 4.96
1979 2403 1.969923 TGAAATCCAAAAGGCTGTGGG 59.030 47.619 15.47 4.64 35.46 4.61
1980 2404 3.656559 CTTGAAATCCAAAAGGCTGTGG 58.343 45.455 10.56 10.56 33.76 4.17
1981 2405 3.062042 GCTTGAAATCCAAAAGGCTGTG 58.938 45.455 0.00 0.00 33.76 3.66
1982 2406 2.699846 TGCTTGAAATCCAAAAGGCTGT 59.300 40.909 0.00 0.00 33.76 4.40
1983 2407 3.389925 TGCTTGAAATCCAAAAGGCTG 57.610 42.857 0.00 0.00 33.76 4.85
1984 2408 5.945144 ATATGCTTGAAATCCAAAAGGCT 57.055 34.783 0.00 0.00 33.76 4.58
1985 2409 6.820152 AGAAATATGCTTGAAATCCAAAAGGC 59.180 34.615 0.00 0.00 33.76 4.35
2031 2455 9.332502 TGCACTAAACTCTCTAAAATGTTGTAA 57.667 29.630 0.00 0.00 0.00 2.41
2032 2456 8.896320 TGCACTAAACTCTCTAAAATGTTGTA 57.104 30.769 0.00 0.00 0.00 2.41
2033 2457 7.801716 TGCACTAAACTCTCTAAAATGTTGT 57.198 32.000 0.00 0.00 0.00 3.32
2034 2458 9.683069 AAATGCACTAAACTCTCTAAAATGTTG 57.317 29.630 0.00 0.00 0.00 3.33
2035 2459 9.683069 CAAATGCACTAAACTCTCTAAAATGTT 57.317 29.630 0.00 0.00 0.00 2.71
2036 2460 9.066892 TCAAATGCACTAAACTCTCTAAAATGT 57.933 29.630 0.00 0.00 0.00 2.71
2037 2461 9.897744 TTCAAATGCACTAAACTCTCTAAAATG 57.102 29.630 0.00 0.00 0.00 2.32
2038 2462 9.899226 GTTCAAATGCACTAAACTCTCTAAAAT 57.101 29.630 0.00 0.00 0.00 1.82
2039 2463 8.349983 GGTTCAAATGCACTAAACTCTCTAAAA 58.650 33.333 0.00 0.00 0.00 1.52
2040 2464 7.040686 GGGTTCAAATGCACTAAACTCTCTAAA 60.041 37.037 0.00 0.00 0.00 1.85
2041 2465 6.430000 GGGTTCAAATGCACTAAACTCTCTAA 59.570 38.462 0.00 0.00 0.00 2.10
2042 2466 5.938125 GGGTTCAAATGCACTAAACTCTCTA 59.062 40.000 0.00 0.00 0.00 2.43
2043 2467 4.762251 GGGTTCAAATGCACTAAACTCTCT 59.238 41.667 0.00 0.00 0.00 3.10
2044 2468 4.518970 TGGGTTCAAATGCACTAAACTCTC 59.481 41.667 0.00 0.00 0.00 3.20
2045 2469 4.278419 GTGGGTTCAAATGCACTAAACTCT 59.722 41.667 0.00 0.00 0.00 3.24
2046 2470 4.037446 TGTGGGTTCAAATGCACTAAACTC 59.963 41.667 0.00 0.00 0.00 3.01
2047 2471 3.957497 TGTGGGTTCAAATGCACTAAACT 59.043 39.130 0.00 0.00 0.00 2.66
2048 2472 4.298332 CTGTGGGTTCAAATGCACTAAAC 58.702 43.478 0.00 0.00 0.00 2.01
2049 2473 3.243704 GCTGTGGGTTCAAATGCACTAAA 60.244 43.478 0.00 0.00 0.00 1.85
2050 2474 2.295909 GCTGTGGGTTCAAATGCACTAA 59.704 45.455 0.00 0.00 0.00 2.24
2051 2475 1.885887 GCTGTGGGTTCAAATGCACTA 59.114 47.619 0.00 0.00 0.00 2.74
2052 2476 0.675633 GCTGTGGGTTCAAATGCACT 59.324 50.000 0.00 0.00 0.00 4.40
2053 2477 0.675633 AGCTGTGGGTTCAAATGCAC 59.324 50.000 0.00 0.00 0.00 4.57
2054 2478 1.412079 AAGCTGTGGGTTCAAATGCA 58.588 45.000 0.00 0.00 0.00 3.96
2055 2479 2.531522 AAAGCTGTGGGTTCAAATGC 57.468 45.000 0.00 0.00 32.26 3.56
2056 2480 3.560896 CCAAAAAGCTGTGGGTTCAAATG 59.439 43.478 3.84 0.00 32.26 2.32
2057 2481 3.199727 ACCAAAAAGCTGTGGGTTCAAAT 59.800 39.130 14.14 0.00 39.39 2.32
2058 2482 2.569404 ACCAAAAAGCTGTGGGTTCAAA 59.431 40.909 14.14 0.00 39.39 2.69
2059 2483 2.093764 CACCAAAAAGCTGTGGGTTCAA 60.094 45.455 14.14 0.00 39.39 2.69
2060 2484 1.480137 CACCAAAAAGCTGTGGGTTCA 59.520 47.619 14.14 0.00 39.39 3.18
2061 2485 1.806247 GCACCAAAAAGCTGTGGGTTC 60.806 52.381 14.14 0.00 39.39 3.62
2062 2486 0.177836 GCACCAAAAAGCTGTGGGTT 59.822 50.000 14.14 0.00 39.39 4.11
2063 2487 0.687427 AGCACCAAAAAGCTGTGGGT 60.687 50.000 14.14 5.62 40.13 4.51
2064 2488 2.126951 AGCACCAAAAAGCTGTGGG 58.873 52.632 14.14 5.02 40.13 4.61
2069 2493 1.442987 GTGCCAGCACCAAAAAGCT 59.557 52.632 11.77 0.00 42.94 3.74
2070 2494 4.032356 GTGCCAGCACCAAAAAGC 57.968 55.556 11.77 0.00 40.79 3.51
2091 2515 4.419921 GTACCCCTGGCCCCAACG 62.420 72.222 0.00 0.00 0.00 4.10
2092 2516 2.374781 TTTGTACCCCTGGCCCCAAC 62.375 60.000 0.00 0.00 0.00 3.77
2093 2517 1.665948 TTTTGTACCCCTGGCCCCAA 61.666 55.000 0.00 0.00 0.00 4.12
2094 2518 1.447964 ATTTTGTACCCCTGGCCCCA 61.448 55.000 0.00 0.00 0.00 4.96
2095 2519 0.252513 AATTTTGTACCCCTGGCCCC 60.253 55.000 0.00 0.00 0.00 5.80
2096 2520 1.191535 GAATTTTGTACCCCTGGCCC 58.808 55.000 0.00 0.00 0.00 5.80
2097 2521 1.191535 GGAATTTTGTACCCCTGGCC 58.808 55.000 0.00 0.00 0.00 5.36
2098 2522 1.824852 CAGGAATTTTGTACCCCTGGC 59.175 52.381 0.00 0.00 40.39 4.85
2099 2523 1.824852 GCAGGAATTTTGTACCCCTGG 59.175 52.381 0.00 0.00 43.36 4.45
2100 2524 1.472480 CGCAGGAATTTTGTACCCCTG 59.528 52.381 0.00 0.00 45.31 4.45
2101 2525 1.834188 CGCAGGAATTTTGTACCCCT 58.166 50.000 0.00 0.00 0.00 4.79
2102 2526 0.172578 GCGCAGGAATTTTGTACCCC 59.827 55.000 0.30 0.00 0.00 4.95
2103 2527 0.885196 TGCGCAGGAATTTTGTACCC 59.115 50.000 5.66 0.00 0.00 3.69
2104 2528 1.732405 GCTGCGCAGGAATTTTGTACC 60.732 52.381 36.47 13.13 0.00 3.34
2105 2529 1.068610 TGCTGCGCAGGAATTTTGTAC 60.069 47.619 36.47 17.23 33.32 2.90
2106 2530 1.068610 GTGCTGCGCAGGAATTTTGTA 60.069 47.619 36.47 7.66 40.08 2.41
2107 2531 0.318955 GTGCTGCGCAGGAATTTTGT 60.319 50.000 36.47 0.00 40.08 2.83
2108 2532 0.318869 TGTGCTGCGCAGGAATTTTG 60.319 50.000 36.47 12.15 40.08 2.44
2109 2533 0.038892 CTGTGCTGCGCAGGAATTTT 60.039 50.000 36.47 0.00 40.08 1.82
2110 2534 0.890542 TCTGTGCTGCGCAGGAATTT 60.891 50.000 36.47 0.00 41.68 1.82
2111 2535 0.890542 TTCTGTGCTGCGCAGGAATT 60.891 50.000 36.47 0.00 41.68 2.17
2134 2558 8.926715 TTCAGGATTATGTCATACGTATATGC 57.073 34.615 7.96 2.57 38.50 3.14
2146 2570 7.814264 ATGGTCTTGAATTCAGGATTATGTC 57.186 36.000 21.56 8.87 34.44 3.06
2192 2623 5.389830 CGGCTATATGAACATGTGTATGCAC 60.390 44.000 7.03 7.03 45.44 4.57
2255 2686 2.552599 TGAGTTGCCGGTTTATCACA 57.447 45.000 1.90 0.00 0.00 3.58
2307 2738 6.042143 GGTATTTGCATTGTGACTAATTGGG 58.958 40.000 0.00 0.00 0.00 4.12
2308 2739 6.866480 AGGTATTTGCATTGTGACTAATTGG 58.134 36.000 0.00 0.00 0.00 3.16
2335 2766 8.150945 GCATAGGATAGTTCTTTCCTCACATAA 58.849 37.037 13.46 0.00 41.50 1.90
2344 2775 5.465056 GCTCAGTGCATAGGATAGTTCTTTC 59.535 44.000 0.00 0.00 42.31 2.62
2409 2921 4.520492 CACTTGCCTTTGTTCCTGATAAGT 59.480 41.667 0.00 0.00 0.00 2.24
2410 2922 4.520492 ACACTTGCCTTTGTTCCTGATAAG 59.480 41.667 0.00 0.00 0.00 1.73
2411 2923 4.469657 ACACTTGCCTTTGTTCCTGATAA 58.530 39.130 0.00 0.00 0.00 1.75
2413 2925 2.949447 ACACTTGCCTTTGTTCCTGAT 58.051 42.857 0.00 0.00 0.00 2.90
2414 2926 2.426738 CAACACTTGCCTTTGTTCCTGA 59.573 45.455 0.00 0.00 33.59 3.86
2415 2927 2.426738 TCAACACTTGCCTTTGTTCCTG 59.573 45.455 0.00 0.00 33.59 3.86
2416 2928 2.733956 TCAACACTTGCCTTTGTTCCT 58.266 42.857 0.00 0.00 33.59 3.36
2427 2939 9.791820 TTGCAGATATTTATGATTCAACACTTG 57.208 29.630 0.00 0.00 0.00 3.16
2454 2966 2.224917 ACCCGGTATTTTGCAAAGGAGA 60.225 45.455 17.12 2.08 0.00 3.71
2511 3023 7.114754 ACTCAATCCTGCTCTTTCATATTTCA 58.885 34.615 0.00 0.00 0.00 2.69
2583 3095 7.894708 TGCTCATTTAAAGGATTGAATCAACA 58.105 30.769 7.56 0.00 0.00 3.33
2623 3135 6.977502 CACTACAGAGAGAAGTCCAATATGTG 59.022 42.308 0.00 0.00 0.00 3.21
2630 3142 3.162147 AGCACTACAGAGAGAAGTCCA 57.838 47.619 0.00 0.00 0.00 4.02
2643 3155 2.480416 CCTCTCACGATCCAAGCACTAC 60.480 54.545 0.00 0.00 0.00 2.73
2728 3240 9.994432 CTTGTTTATTATCACAATTCACCTCTC 57.006 33.333 0.00 0.00 32.50 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.