Multiple sequence alignment - TraesCS6A01G415800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G415800 chr6A 100.000 4068 0 0 1 4068 615413538 615409471 0.000000e+00 7513
1 TraesCS6A01G415800 chr6A 99.359 156 1 0 3913 4068 615402990 615402835 2.390000e-72 283
2 TraesCS6A01G415800 chr6A 99.355 155 1 0 3914 4068 26843792 26843638 8.610000e-72 281
3 TraesCS6A01G415800 chr6A 98.710 155 2 0 3914 4068 34340221 34340375 4.010000e-70 276
4 TraesCS6A01G415800 chr6A 98.089 157 3 0 3912 4068 614557004 614557160 1.440000e-69 274
5 TraesCS6A01G415800 chr7D 92.057 3097 161 53 737 3792 21681528 21678476 0.000000e+00 4277
6 TraesCS6A01G415800 chr7D 92.713 2964 157 42 737 3682 108301731 108298809 0.000000e+00 4222
7 TraesCS6A01G415800 chr7D 92.650 2966 162 40 737 3682 108264808 108261879 0.000000e+00 4218
8 TraesCS6A01G415800 chr7D 92.810 612 29 10 1 609 108302321 108301722 0.000000e+00 872
9 TraesCS6A01G415800 chr7D 92.845 601 29 9 13 609 21682109 21681519 0.000000e+00 859
10 TraesCS6A01G415800 chr7D 91.734 617 29 15 1 609 108265401 108264799 0.000000e+00 837
11 TraesCS6A01G415800 chr7D 93.651 126 8 0 3789 3914 108261698 108261573 5.370000e-44 189
12 TraesCS6A01G415800 chr7D 92.857 126 9 0 3789 3914 21678432 21678307 2.500000e-42 183
13 TraesCS6A01G415800 chr7D 89.916 119 9 2 3676 3792 108261859 108261742 2.530000e-32 150
14 TraesCS6A01G415800 chr7D 89.916 119 9 2 3676 3792 108298789 108298672 2.530000e-32 150
15 TraesCS6A01G415800 chr5D 92.780 2964 158 42 737 3682 30633802 30630877 0.000000e+00 4237
16 TraesCS6A01G415800 chr5D 91.182 1633 95 33 2068 3682 420308643 420307042 0.000000e+00 2172
17 TraesCS6A01G415800 chr5D 94.226 1351 68 10 737 2083 420310003 420308659 0.000000e+00 2054
18 TraesCS6A01G415800 chr5D 92.520 615 28 11 1 609 420310596 420309994 0.000000e+00 865
19 TraesCS6A01G415800 chr5D 92.045 616 29 14 1 609 30634395 30633793 0.000000e+00 848
20 TraesCS6A01G415800 chr5D 93.651 126 8 0 3789 3914 420306861 420306736 5.370000e-44 189
21 TraesCS6A01G415800 chr5D 92.063 126 10 0 3789 3914 30630696 30630571 1.160000e-40 178
22 TraesCS6A01G415800 chr5D 89.916 119 9 2 3676 3792 30630857 30630740 2.530000e-32 150
23 TraesCS6A01G415800 chr5D 89.916 119 9 2 3676 3792 420307022 420306905 2.530000e-32 150
24 TraesCS6A01G415800 chr2D 92.214 2967 169 43 737 3682 343142964 343140039 0.000000e+00 4143
25 TraesCS6A01G415800 chr2D 92.045 616 29 14 1 609 343143557 343142955 0.000000e+00 848
26 TraesCS6A01G415800 chr2D 94.444 126 7 0 3789 3914 343139858 343139733 1.150000e-45 195
27 TraesCS6A01G415800 chr2D 89.916 119 9 2 3676 3792 343140019 343139902 2.530000e-32 150
28 TraesCS6A01G415800 chr3A 95.444 2612 82 26 1 2592 735464346 735466940 0.000000e+00 4130
29 TraesCS6A01G415800 chr3A 94.849 1262 40 14 2655 3914 735466937 735468175 0.000000e+00 1947
30 TraesCS6A01G415800 chr1D 93.095 2766 134 43 737 3482 66200035 66197307 0.000000e+00 3997
31 TraesCS6A01G415800 chr1D 92.033 615 31 11 1 609 66200628 66200026 0.000000e+00 848
32 TraesCS6A01G415800 chr1D 92.308 130 9 1 3786 3914 66196881 66196752 2.500000e-42 183
33 TraesCS6A01G415800 chr1D 89.916 119 9 2 3676 3792 66197030 66196913 2.530000e-32 150
34 TraesCS6A01G415800 chr7B 85.936 2517 264 64 1219 3682 712608234 712610713 0.000000e+00 2604
35 TraesCS6A01G415800 chr1B 84.830 2472 266 64 1225 3646 621586238 621583826 0.000000e+00 2386
36 TraesCS6A01G415800 chr1B 79.070 516 64 25 13 523 621587405 621586929 8.490000e-82 315
37 TraesCS6A01G415800 chr4B 82.487 571 80 17 540 1105 638493787 638493232 2.200000e-132 483
38 TraesCS6A01G415800 chrUn 98.718 156 2 0 3913 4068 71727852 71727697 1.110000e-70 278
39 TraesCS6A01G415800 chrUn 98.718 156 2 0 3913 4068 370087128 370086973 1.110000e-70 278
40 TraesCS6A01G415800 chr2A 98.718 156 2 0 3913 4068 31680503 31680658 1.110000e-70 278
41 TraesCS6A01G415800 chr2A 98.718 156 2 0 3913 4068 760909767 760909922 1.110000e-70 278
42 TraesCS6A01G415800 chr2A 98.718 156 2 0 3913 4068 764035864 764035709 1.110000e-70 278


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G415800 chr6A 615409471 615413538 4067 True 7513.00 7513 100.000000 1 4068 1 chr6A.!!$R3 4067
1 TraesCS6A01G415800 chr7D 21678307 21682109 3802 True 1773.00 4277 92.586333 13 3914 3 chr7D.!!$R1 3901
2 TraesCS6A01G415800 chr7D 108298672 108302321 3649 True 1748.00 4222 91.813000 1 3792 3 chr7D.!!$R3 3791
3 TraesCS6A01G415800 chr7D 108261573 108265401 3828 True 1348.50 4218 91.987750 1 3914 4 chr7D.!!$R2 3913
4 TraesCS6A01G415800 chr5D 30630571 30634395 3824 True 1353.25 4237 91.701000 1 3914 4 chr5D.!!$R1 3913
5 TraesCS6A01G415800 chr5D 420306736 420310596 3860 True 1086.00 2172 92.299000 1 3914 5 chr5D.!!$R2 3913
6 TraesCS6A01G415800 chr2D 343139733 343143557 3824 True 1334.00 4143 92.154750 1 3914 4 chr2D.!!$R1 3913
7 TraesCS6A01G415800 chr3A 735464346 735468175 3829 False 3038.50 4130 95.146500 1 3914 2 chr3A.!!$F1 3913
8 TraesCS6A01G415800 chr1D 66196752 66200628 3876 True 1294.50 3997 91.838000 1 3914 4 chr1D.!!$R1 3913
9 TraesCS6A01G415800 chr7B 712608234 712610713 2479 False 2604.00 2604 85.936000 1219 3682 1 chr7B.!!$F1 2463
10 TraesCS6A01G415800 chr1B 621583826 621587405 3579 True 1350.50 2386 81.950000 13 3646 2 chr1B.!!$R1 3633
11 TraesCS6A01G415800 chr4B 638493232 638493787 555 True 483.00 483 82.487000 540 1105 1 chr4B.!!$R1 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
213 255 1.073177 GCATGTTTGCTGGCATCAAC 58.927 50.000 2.77 0.2 45.77 3.18 F
414 457 3.381590 TCAGACTATGACGATTGTGGGAG 59.618 47.826 0.00 0.0 31.12 4.30 F
1043 1150 2.890311 CAACAACATGCTACTCCCCAAA 59.110 45.455 0.00 0.0 0.00 3.28 F
2010 2152 1.135373 TGTCGGATGCTCTTTCGAGAC 60.135 52.381 0.00 0.0 39.74 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1043 1150 0.038744 CTCACTGTCCCATTTGCCCT 59.961 55.000 0.00 0.0 0.00 5.19 R
1511 1645 1.165270 GAACATCCGGAAACACCTGG 58.835 55.000 9.01 0.0 36.31 4.45 R
2968 3181 1.292223 GACCCTTGCGTCTGCTACA 59.708 57.895 0.00 0.0 43.34 2.74 R
3980 4365 0.178958 ACAACACTCTCCCCTCTCGT 60.179 55.000 0.00 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.491675 TGACATGCATTTTGTTTCTTCATTTAT 57.508 25.926 0.00 0.00 0.00 1.40
143 148 4.003648 GCACTATCAAACAGTACTGCCTT 58.996 43.478 22.90 13.31 0.00 4.35
150 155 6.072112 TCAAACAGTACTGCCTTCATTTTC 57.928 37.500 22.90 0.00 0.00 2.29
213 255 1.073177 GCATGTTTGCTGGCATCAAC 58.927 50.000 2.77 0.20 45.77 3.18
237 279 4.815308 CCATTTCTCATTTGTTTTGTGCCA 59.185 37.500 0.00 0.00 0.00 4.92
367 410 6.803807 GGCAAAAGTATTTCTTCACAGATGAC 59.196 38.462 0.00 0.00 37.28 3.06
392 435 4.006319 GACACCTAGCTGCAGAATTCTTT 58.994 43.478 20.43 0.00 0.00 2.52
398 441 4.018484 AGCTGCAGAATTCTTTCAGACT 57.982 40.909 26.69 21.25 34.08 3.24
403 446 6.456718 GCTGCAGAATTCTTTCAGACTATGAC 60.457 42.308 26.69 11.60 37.77 3.06
414 457 3.381590 TCAGACTATGACGATTGTGGGAG 59.618 47.826 0.00 0.00 31.12 4.30
956 1062 9.410556 CCTTACTTTTTCCTGTGTTTCATTATG 57.589 33.333 0.00 0.00 0.00 1.90
1043 1150 2.890311 CAACAACATGCTACTCCCCAAA 59.110 45.455 0.00 0.00 0.00 3.28
1223 1340 7.245604 TCTAAAAGTGTGTTTTCGGTTTCTTC 58.754 34.615 0.00 0.00 0.00 2.87
1262 1381 6.877611 AACACGTCCTCTCAACATTATTTT 57.122 33.333 0.00 0.00 0.00 1.82
1263 1382 6.241207 ACACGTCCTCTCAACATTATTTTG 57.759 37.500 0.00 0.00 0.00 2.44
1266 1385 4.155826 CGTCCTCTCAACATTATTTTGCCA 59.844 41.667 0.00 0.00 0.00 4.92
1267 1386 5.402398 GTCCTCTCAACATTATTTTGCCAC 58.598 41.667 0.00 0.00 0.00 5.01
1556 1690 3.652057 TTGGGGGAGAGATCATTCAAC 57.348 47.619 0.00 0.00 0.00 3.18
1648 1782 5.356882 TCAAGTGGTAAAGAGAATTTGCG 57.643 39.130 0.00 0.00 0.00 4.85
1754 1888 1.486726 GAGCTACACAGGGGCATAGTT 59.513 52.381 0.00 0.00 0.00 2.24
1755 1889 1.916181 AGCTACACAGGGGCATAGTTT 59.084 47.619 0.00 0.00 0.00 2.66
1756 1890 2.308866 AGCTACACAGGGGCATAGTTTT 59.691 45.455 0.00 0.00 0.00 2.43
1825 1963 1.904287 TTCCACATTTTCCCCGTGAG 58.096 50.000 0.00 0.00 32.23 3.51
2010 2152 1.135373 TGTCGGATGCTCTTTCGAGAC 60.135 52.381 0.00 0.00 39.74 3.36
2106 2279 6.922957 TCCAAGCACAACTCAACATATTTTTC 59.077 34.615 0.00 0.00 0.00 2.29
2108 2281 7.224362 CCAAGCACAACTCAACATATTTTTCAA 59.776 33.333 0.00 0.00 0.00 2.69
2109 2282 7.698836 AGCACAACTCAACATATTTTTCAAC 57.301 32.000 0.00 0.00 0.00 3.18
2110 2283 7.264221 AGCACAACTCAACATATTTTTCAACA 58.736 30.769 0.00 0.00 0.00 3.33
2111 2284 7.436080 AGCACAACTCAACATATTTTTCAACAG 59.564 33.333 0.00 0.00 0.00 3.16
2112 2285 7.434897 GCACAACTCAACATATTTTTCAACAGA 59.565 33.333 0.00 0.00 0.00 3.41
2776 2984 8.935614 AAGCAAATAGGAAGGTAAAAACTAGT 57.064 30.769 0.00 0.00 0.00 2.57
3024 3237 8.773645 TGACATTCTGTTTAGTATTCACAACAG 58.226 33.333 4.80 4.80 45.04 3.16
3167 3384 9.860898 ACATAATTGTTTATCTTTTTCTCCTGC 57.139 29.630 0.00 0.00 29.55 4.85
3180 3399 4.871933 TTCTCCTGCCTTTCCATTTTTC 57.128 40.909 0.00 0.00 0.00 2.29
3181 3400 4.118168 TCTCCTGCCTTTCCATTTTTCT 57.882 40.909 0.00 0.00 0.00 2.52
3182 3401 3.828451 TCTCCTGCCTTTCCATTTTTCTG 59.172 43.478 0.00 0.00 0.00 3.02
3183 3402 3.575687 CTCCTGCCTTTCCATTTTTCTGT 59.424 43.478 0.00 0.00 0.00 3.41
3184 3403 3.321682 TCCTGCCTTTCCATTTTTCTGTG 59.678 43.478 0.00 0.00 0.00 3.66
3185 3404 3.070015 CCTGCCTTTCCATTTTTCTGTGT 59.930 43.478 0.00 0.00 0.00 3.72
3186 3405 4.280677 CCTGCCTTTCCATTTTTCTGTGTA 59.719 41.667 0.00 0.00 0.00 2.90
3187 3406 5.047092 CCTGCCTTTCCATTTTTCTGTGTAT 60.047 40.000 0.00 0.00 0.00 2.29
3190 3414 6.928492 TGCCTTTCCATTTTTCTGTGTATTTC 59.072 34.615 0.00 0.00 0.00 2.17
3223 3448 4.904253 TGCCACTGTAAACAAAGTTACC 57.096 40.909 0.00 0.00 33.76 2.85
3227 3452 6.071278 TGCCACTGTAAACAAAGTTACCTTTT 60.071 34.615 0.00 0.00 38.87 2.27
3228 3453 6.814644 GCCACTGTAAACAAAGTTACCTTTTT 59.185 34.615 0.00 0.00 38.87 1.94
3229 3454 7.201487 GCCACTGTAAACAAAGTTACCTTTTTG 60.201 37.037 0.00 0.00 38.87 2.44
3230 3455 7.815549 CCACTGTAAACAAAGTTACCTTTTTGT 59.184 33.333 0.00 0.00 46.33 2.83
3320 3553 4.404073 ACCAACCAAGCACAACATTTTCTA 59.596 37.500 0.00 0.00 0.00 2.10
3536 3838 9.012161 TGTCATGTTGTTTTCAGATCAATATCA 57.988 29.630 0.00 0.00 34.28 2.15
3701 4037 7.060383 TCTTTGGTGCAGGATTTCAAAATTA 57.940 32.000 0.00 0.00 0.00 1.40
3737 4073 3.920446 TGTACTTTCTACAGCGCAATCA 58.080 40.909 11.47 0.00 0.00 2.57
3867 4252 7.776969 ACAGTATCAAAAGTGCTATCATCCATT 59.223 33.333 0.00 0.00 0.00 3.16
3868 4253 8.288208 CAGTATCAAAAGTGCTATCATCCATTC 58.712 37.037 0.00 0.00 0.00 2.67
3914 4299 2.166829 TGTTCAGTGGCACAACAAACT 58.833 42.857 21.41 0.00 44.16 2.66
3915 4300 2.094803 TGTTCAGTGGCACAACAAACTG 60.095 45.455 21.41 7.43 44.16 3.16
3916 4301 1.832883 TCAGTGGCACAACAAACTGT 58.167 45.000 21.41 0.00 44.16 3.55
3917 4302 2.166829 TCAGTGGCACAACAAACTGTT 58.833 42.857 21.41 0.00 44.16 3.16
3926 4311 0.458260 AACAAACTGTTGGGGAACGC 59.542 50.000 0.00 0.00 39.45 4.84
3938 4323 3.926821 GGGGAACGCAGTAATTTCAAA 57.073 42.857 0.00 0.00 45.00 2.69
3939 4324 4.245845 GGGGAACGCAGTAATTTCAAAA 57.754 40.909 0.00 0.00 45.00 2.44
3940 4325 4.623002 GGGGAACGCAGTAATTTCAAAAA 58.377 39.130 0.00 0.00 45.00 1.94
3941 4326 5.234752 GGGGAACGCAGTAATTTCAAAAAT 58.765 37.500 0.00 0.00 45.00 1.82
3942 4327 5.699001 GGGGAACGCAGTAATTTCAAAAATT 59.301 36.000 3.43 3.43 45.00 1.82
3943 4328 6.203915 GGGGAACGCAGTAATTTCAAAAATTT 59.796 34.615 3.24 0.00 45.00 1.82
3944 4329 7.254966 GGGGAACGCAGTAATTTCAAAAATTTT 60.255 33.333 0.00 0.00 45.00 1.82
3945 4330 7.796660 GGGAACGCAGTAATTTCAAAAATTTTC 59.203 33.333 3.41 1.31 45.00 2.29
3946 4331 7.796660 GGAACGCAGTAATTTCAAAAATTTTCC 59.203 33.333 3.41 5.88 45.00 3.13
3947 4332 8.432110 AACGCAGTAATTTCAAAAATTTTCCT 57.568 26.923 3.41 0.00 45.00 3.36
3948 4333 9.535878 AACGCAGTAATTTCAAAAATTTTCCTA 57.464 25.926 3.41 0.00 45.00 2.94
3949 4334 8.974408 ACGCAGTAATTTCAAAAATTTTCCTAC 58.026 29.630 3.41 1.08 41.94 3.18
3950 4335 8.153411 CGCAGTAATTTCAAAAATTTTCCTACG 58.847 33.333 3.41 2.01 0.00 3.51
3951 4336 7.949962 GCAGTAATTTCAAAAATTTTCCTACGC 59.050 33.333 3.41 5.15 0.00 4.42
3952 4337 8.973378 CAGTAATTTCAAAAATTTTCCTACGCA 58.027 29.630 3.41 0.00 0.00 5.24
3953 4338 8.974408 AGTAATTTCAAAAATTTTCCTACGCAC 58.026 29.630 3.41 0.00 0.00 5.34
3954 4339 7.778470 AATTTCAAAAATTTTCCTACGCACA 57.222 28.000 3.41 0.00 0.00 4.57
3955 4340 6.576551 TTTCAAAAATTTTCCTACGCACAC 57.423 33.333 3.41 0.00 0.00 3.82
3957 4342 2.325509 AAATTTTCCTACGCACACGC 57.674 45.000 0.00 0.00 45.53 5.34
3958 4343 1.231221 AATTTTCCTACGCACACGCA 58.769 45.000 0.00 0.00 45.53 5.24
3959 4344 1.231221 ATTTTCCTACGCACACGCAA 58.769 45.000 0.00 0.00 45.53 4.85
3960 4345 0.584396 TTTTCCTACGCACACGCAAG 59.416 50.000 0.00 0.00 45.53 4.01
3961 4346 0.249531 TTTCCTACGCACACGCAAGA 60.250 50.000 0.00 0.00 45.53 3.02
3962 4347 0.037697 TTCCTACGCACACGCAAGAT 60.038 50.000 0.00 0.00 45.53 2.40
3963 4348 0.457853 TCCTACGCACACGCAAGATC 60.458 55.000 0.00 0.00 45.53 2.75
3964 4349 0.735978 CCTACGCACACGCAAGATCA 60.736 55.000 0.00 0.00 45.53 2.92
3965 4350 1.280982 CTACGCACACGCAAGATCAT 58.719 50.000 0.00 0.00 45.53 2.45
3966 4351 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
3967 4352 1.061411 CGCACACGCAAGATCATGG 59.939 57.895 0.00 0.00 43.62 3.66
3968 4353 1.638388 CGCACACGCAAGATCATGGT 61.638 55.000 0.00 0.00 43.62 3.55
3969 4354 0.179181 GCACACGCAAGATCATGGTG 60.179 55.000 14.17 14.17 43.62 4.17
3970 4355 1.441738 CACACGCAAGATCATGGTGA 58.558 50.000 19.56 0.00 43.62 4.02
3971 4356 2.011947 CACACGCAAGATCATGGTGAT 58.988 47.619 19.56 0.00 40.34 3.06
3972 4357 2.011947 ACACGCAAGATCATGGTGATG 58.988 47.619 19.56 8.58 37.20 3.07
3973 4358 1.019673 ACGCAAGATCATGGTGATGC 58.980 50.000 0.00 3.06 37.20 3.91
3974 4359 1.018910 CGCAAGATCATGGTGATGCA 58.981 50.000 11.83 0.00 37.20 3.96
3975 4360 1.268386 CGCAAGATCATGGTGATGCAC 60.268 52.381 11.83 0.00 37.20 4.57
3976 4361 1.746787 GCAAGATCATGGTGATGCACA 59.253 47.619 7.52 0.00 37.20 4.57
3977 4362 2.223502 GCAAGATCATGGTGATGCACAG 60.224 50.000 7.52 0.00 37.20 3.66
3978 4363 1.676746 AGATCATGGTGATGCACAGC 58.323 50.000 10.34 10.34 45.87 4.40
3983 4368 3.654201 GGTGATGCACAGCAACGA 58.346 55.556 11.81 0.00 43.62 3.85
3984 4369 1.499056 GGTGATGCACAGCAACGAG 59.501 57.895 11.81 0.00 43.62 4.18
3985 4370 0.950555 GGTGATGCACAGCAACGAGA 60.951 55.000 11.81 0.00 43.62 4.04
3986 4371 0.441533 GTGATGCACAGCAACGAGAG 59.558 55.000 0.00 0.00 43.62 3.20
3987 4372 0.671472 TGATGCACAGCAACGAGAGG 60.671 55.000 0.00 0.00 43.62 3.69
3988 4373 1.364626 GATGCACAGCAACGAGAGGG 61.365 60.000 0.00 0.00 43.62 4.30
3989 4374 2.743928 GCACAGCAACGAGAGGGG 60.744 66.667 0.00 0.00 0.00 4.79
3990 4375 3.059982 CACAGCAACGAGAGGGGA 58.940 61.111 0.00 0.00 0.00 4.81
3991 4376 1.079543 CACAGCAACGAGAGGGGAG 60.080 63.158 0.00 0.00 0.00 4.30
3992 4377 1.228894 ACAGCAACGAGAGGGGAGA 60.229 57.895 0.00 0.00 0.00 3.71
3993 4378 1.254284 ACAGCAACGAGAGGGGAGAG 61.254 60.000 0.00 0.00 0.00 3.20
3994 4379 1.077625 AGCAACGAGAGGGGAGAGT 59.922 57.895 0.00 0.00 0.00 3.24
3995 4380 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
3996 4381 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
3997 4382 0.969894 CAACGAGAGGGGAGAGTGTT 59.030 55.000 0.00 0.00 0.00 3.32
3998 4383 0.969894 AACGAGAGGGGAGAGTGTTG 59.030 55.000 0.00 0.00 0.00 3.33
3999 4384 0.178958 ACGAGAGGGGAGAGTGTTGT 60.179 55.000 0.00 0.00 0.00 3.32
4000 4385 0.528470 CGAGAGGGGAGAGTGTTGTC 59.472 60.000 0.00 0.00 0.00 3.18
4001 4386 1.888826 CGAGAGGGGAGAGTGTTGTCT 60.889 57.143 0.00 0.00 0.00 3.41
4002 4387 2.618302 CGAGAGGGGAGAGTGTTGTCTA 60.618 54.545 0.00 0.00 0.00 2.59
4003 4388 2.756207 GAGAGGGGAGAGTGTTGTCTAC 59.244 54.545 0.00 0.00 0.00 2.59
4004 4389 1.473278 GAGGGGAGAGTGTTGTCTACG 59.527 57.143 0.00 0.00 0.00 3.51
4005 4390 1.203025 AGGGGAGAGTGTTGTCTACGT 60.203 52.381 0.00 0.00 0.00 3.57
4006 4391 2.040813 AGGGGAGAGTGTTGTCTACGTA 59.959 50.000 0.00 0.00 0.00 3.57
4007 4392 2.163211 GGGGAGAGTGTTGTCTACGTAC 59.837 54.545 0.00 0.00 0.00 3.67
4008 4393 2.163211 GGGAGAGTGTTGTCTACGTACC 59.837 54.545 0.00 0.00 0.00 3.34
4009 4394 2.816087 GGAGAGTGTTGTCTACGTACCA 59.184 50.000 0.00 0.00 0.00 3.25
4010 4395 3.254166 GGAGAGTGTTGTCTACGTACCAA 59.746 47.826 0.00 0.00 0.00 3.67
4011 4396 4.225208 GAGAGTGTTGTCTACGTACCAAC 58.775 47.826 19.37 19.37 39.08 3.77
4020 4405 2.256158 CGTACCAACGCAGACCGA 59.744 61.111 0.00 0.00 43.12 4.69
4021 4406 2.084681 CGTACCAACGCAGACCGAC 61.085 63.158 0.00 0.00 43.12 4.79
4022 4407 1.288127 GTACCAACGCAGACCGACT 59.712 57.895 0.00 0.00 41.02 4.18
4042 4427 1.416049 CGGAAGCGATCACACAACG 59.584 57.895 0.00 0.00 0.00 4.10
4043 4428 1.282248 CGGAAGCGATCACACAACGT 61.282 55.000 0.00 0.00 0.00 3.99
4044 4429 1.705256 GGAAGCGATCACACAACGTA 58.295 50.000 0.00 0.00 0.00 3.57
4045 4430 1.654105 GGAAGCGATCACACAACGTAG 59.346 52.381 0.00 0.00 0.00 3.51
4046 4431 2.592194 GAAGCGATCACACAACGTAGA 58.408 47.619 0.00 0.00 0.00 2.59
4047 4432 2.264109 AGCGATCACACAACGTAGAG 57.736 50.000 0.00 0.00 0.00 2.43
4048 4433 1.135373 AGCGATCACACAACGTAGAGG 60.135 52.381 0.00 0.00 0.00 3.69
4049 4434 1.135489 GCGATCACACAACGTAGAGGA 60.135 52.381 0.00 0.00 0.00 3.71
4050 4435 2.670229 GCGATCACACAACGTAGAGGAA 60.670 50.000 0.00 0.00 0.00 3.36
4051 4436 3.172050 CGATCACACAACGTAGAGGAAG 58.828 50.000 0.00 0.00 0.00 3.46
4052 4437 3.366070 CGATCACACAACGTAGAGGAAGT 60.366 47.826 0.00 0.00 0.00 3.01
4053 4438 4.142752 CGATCACACAACGTAGAGGAAGTA 60.143 45.833 0.00 0.00 0.00 2.24
4054 4439 4.761235 TCACACAACGTAGAGGAAGTAG 57.239 45.455 0.00 0.00 0.00 2.57
4055 4440 4.139786 TCACACAACGTAGAGGAAGTAGT 58.860 43.478 0.00 0.00 0.00 2.73
4056 4441 4.214971 TCACACAACGTAGAGGAAGTAGTC 59.785 45.833 0.00 0.00 0.00 2.59
4057 4442 3.188048 ACACAACGTAGAGGAAGTAGTCG 59.812 47.826 0.00 0.00 0.00 4.18
4058 4443 3.188048 CACAACGTAGAGGAAGTAGTCGT 59.812 47.826 0.00 0.00 0.00 4.34
4059 4444 4.389992 CACAACGTAGAGGAAGTAGTCGTA 59.610 45.833 0.00 0.00 0.00 3.43
4060 4445 4.390297 ACAACGTAGAGGAAGTAGTCGTAC 59.610 45.833 0.00 0.00 0.00 3.67
4061 4446 4.193826 ACGTAGAGGAAGTAGTCGTACA 57.806 45.455 0.00 0.00 0.00 2.90
4062 4447 4.180057 ACGTAGAGGAAGTAGTCGTACAG 58.820 47.826 0.00 0.00 0.00 2.74
4063 4448 3.001127 CGTAGAGGAAGTAGTCGTACAGC 59.999 52.174 0.00 0.00 0.00 4.40
4064 4449 3.353370 AGAGGAAGTAGTCGTACAGCT 57.647 47.619 0.00 0.00 0.00 4.24
4065 4450 3.688235 AGAGGAAGTAGTCGTACAGCTT 58.312 45.455 0.00 0.00 0.00 3.74
4066 4451 3.690628 AGAGGAAGTAGTCGTACAGCTTC 59.309 47.826 0.00 0.00 33.49 3.86
4067 4452 3.688235 AGGAAGTAGTCGTACAGCTTCT 58.312 45.455 0.00 0.00 34.17 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
213 255 4.213906 GGCACAAAACAAATGAGAAATGGG 59.786 41.667 0.00 0.00 0.00 4.00
250 293 6.253298 CGTTGTCATGCAAAAGAAAGAAGAAA 59.747 34.615 0.00 0.00 39.03 2.52
260 303 3.689161 TCTATCCCGTTGTCATGCAAAAG 59.311 43.478 0.00 3.12 39.03 2.27
262 305 3.342377 TCTATCCCGTTGTCATGCAAA 57.658 42.857 0.00 0.00 39.03 3.68
263 306 3.118445 TCATCTATCCCGTTGTCATGCAA 60.118 43.478 0.00 0.00 34.16 4.08
264 307 2.433970 TCATCTATCCCGTTGTCATGCA 59.566 45.455 0.00 0.00 0.00 3.96
265 308 3.111853 TCATCTATCCCGTTGTCATGC 57.888 47.619 0.00 0.00 0.00 4.06
352 395 2.058798 GTCGCGTCATCTGTGAAGAAA 58.941 47.619 5.77 0.00 36.13 2.52
367 410 2.819117 TTCTGCAGCTAGGTGTCGCG 62.819 60.000 22.21 0.00 0.00 5.87
392 435 3.361786 TCCCACAATCGTCATAGTCTGA 58.638 45.455 0.00 0.00 0.00 3.27
398 441 4.545208 TTTGACTCCCACAATCGTCATA 57.455 40.909 0.00 0.00 36.41 2.15
403 446 4.935205 TCTGTTATTTGACTCCCACAATCG 59.065 41.667 0.00 0.00 0.00 3.34
414 457 6.088824 CACAATTCTGGCTCTGTTATTTGAC 58.911 40.000 0.00 0.00 0.00 3.18
655 751 8.115490 AGGAAATTTTAGGTGAATCACAAGAG 57.885 34.615 15.86 0.00 35.86 2.85
658 754 8.698973 TGTAGGAAATTTTAGGTGAATCACAA 57.301 30.769 15.86 0.95 35.86 3.33
720 816 6.763135 TGCTCATCCTATGAAAAGACATACAC 59.237 38.462 0.00 0.00 39.11 2.90
884 985 8.233190 AGAGAAAGCGAGAAACAAAGATAATTG 58.767 33.333 0.00 0.00 36.37 2.32
1043 1150 0.038744 CTCACTGTCCCATTTGCCCT 59.961 55.000 0.00 0.00 0.00 5.19
1188 1305 3.136626 ACACACTTTTAGAGGGCAGACTT 59.863 43.478 0.00 0.00 29.07 3.01
1223 1340 4.606961 ACGTGTTTAGCAACCAATCAAAG 58.393 39.130 0.00 0.00 31.02 2.77
1262 1381 4.334552 TGAATATCTCTGCAAAAGTGGCA 58.665 39.130 0.00 0.00 39.32 4.92
1263 1382 4.970662 TGAATATCTCTGCAAAAGTGGC 57.029 40.909 0.00 0.00 0.00 5.01
1266 1385 7.275888 TGTTGTTGAATATCTCTGCAAAAGT 57.724 32.000 0.00 0.00 0.00 2.66
1267 1386 7.648908 TGTTGTTGTTGAATATCTCTGCAAAAG 59.351 33.333 0.00 0.00 0.00 2.27
1324 1443 7.063074 GCCTTCTTGTTCATCATTTTCATCAAG 59.937 37.037 0.00 0.00 34.35 3.02
1468 1602 9.013229 ACACAATTTATGATTAGTGTGTGTGAT 57.987 29.630 10.99 0.00 45.70 3.06
1511 1645 1.165270 GAACATCCGGAAACACCTGG 58.835 55.000 9.01 0.00 36.31 4.45
1512 1646 1.890876 TGAACATCCGGAAACACCTG 58.109 50.000 9.01 2.99 36.31 4.00
1519 1653 3.007398 CCCCAAAATTTGAACATCCGGAA 59.993 43.478 9.01 0.00 0.00 4.30
1556 1690 3.735237 ACCATACTAGAGCATGAACCG 57.265 47.619 0.00 0.00 0.00 4.44
1722 1856 4.297510 CTGTGTAGCTCTATCTCATGTGC 58.702 47.826 0.00 0.00 0.00 4.57
1754 1888 6.600032 TGTGAGGTTCAACTTTGCTTAGTAAA 59.400 34.615 0.00 0.00 0.00 2.01
1755 1889 6.116806 TGTGAGGTTCAACTTTGCTTAGTAA 58.883 36.000 0.00 0.00 0.00 2.24
1756 1890 5.676552 TGTGAGGTTCAACTTTGCTTAGTA 58.323 37.500 0.00 0.00 0.00 1.82
1812 1949 4.042271 ACCATTTACTCACGGGGAAAAT 57.958 40.909 0.00 0.00 0.00 1.82
2010 2152 6.032094 CGTTTTTGATCTCCTTGGATGATTG 58.968 40.000 0.00 0.00 0.00 2.67
2134 2307 2.044793 TCCACCCAAGAAGTCCAGAT 57.955 50.000 0.00 0.00 0.00 2.90
2204 2379 7.601508 CCTTCCTTCTTCAGATTTCCAATTTTG 59.398 37.037 0.00 0.00 0.00 2.44
2612 2807 7.841282 TTAGGAACACAAAAATGAATGGGTA 57.159 32.000 0.00 0.00 30.31 3.69
2695 2903 4.289410 TGAAACCCATTCCTCTCAGATTGA 59.711 41.667 0.00 0.00 37.22 2.57
2968 3181 1.292223 GACCCTTGCGTCTGCTACA 59.708 57.895 0.00 0.00 43.34 2.74
3167 3384 9.546428 AAAGAAATACACAGAAAAATGGAAAGG 57.454 29.630 0.00 0.00 0.00 3.11
3227 3452 8.474025 ACCTCAAAATGACAGACAATAAAACAA 58.526 29.630 0.00 0.00 0.00 2.83
3228 3453 8.006298 ACCTCAAAATGACAGACAATAAAACA 57.994 30.769 0.00 0.00 0.00 2.83
3229 3454 8.871686 AACCTCAAAATGACAGACAATAAAAC 57.128 30.769 0.00 0.00 0.00 2.43
3230 3455 9.959749 GTAACCTCAAAATGACAGACAATAAAA 57.040 29.630 0.00 0.00 0.00 1.52
3231 3456 9.349713 AGTAACCTCAAAATGACAGACAATAAA 57.650 29.630 0.00 0.00 0.00 1.40
3297 3528 3.197549 AGAAAATGTTGTGCTTGGTTGGT 59.802 39.130 0.00 0.00 0.00 3.67
3320 3553 7.977818 TCTTGTAGTATTCCTCCATGCATTAT 58.022 34.615 0.00 0.00 0.00 1.28
3502 3804 5.042593 TGAAAACAACATGACACATTCTGC 58.957 37.500 0.00 0.00 0.00 4.26
3615 3921 7.378728 CGCTACAGACGACATGAAAATATTAGA 59.621 37.037 0.00 0.00 0.00 2.10
3701 4037 1.810151 AGTACATTCCGTGCGCAAAAT 59.190 42.857 14.00 10.02 35.00 1.82
3761 4099 5.104652 ACACTGACCTTAACACAGTAGGTTT 60.105 40.000 0.00 0.00 42.21 3.27
3847 4232 5.945191 TGTGAATGGATGATAGCACTTTTGA 59.055 36.000 0.00 0.00 0.00 2.69
3867 4252 8.408043 AAAACATGAAGGAACTATGATTGTGA 57.592 30.769 0.00 0.00 38.49 3.58
3914 4299 2.279935 AATTACTGCGTTCCCCAACA 57.720 45.000 0.00 0.00 32.14 3.33
3915 4300 2.554893 TGAAATTACTGCGTTCCCCAAC 59.445 45.455 0.00 0.00 0.00 3.77
3916 4301 2.865079 TGAAATTACTGCGTTCCCCAA 58.135 42.857 0.00 0.00 0.00 4.12
3917 4302 2.570415 TGAAATTACTGCGTTCCCCA 57.430 45.000 0.00 0.00 0.00 4.96
3918 4303 3.926821 TTTGAAATTACTGCGTTCCCC 57.073 42.857 0.00 0.00 0.00 4.81
3919 4304 6.779115 AATTTTTGAAATTACTGCGTTCCC 57.221 33.333 0.00 0.00 0.00 3.97
3920 4305 7.796660 GGAAAATTTTTGAAATTACTGCGTTCC 59.203 33.333 4.63 8.24 0.00 3.62
3921 4306 8.547894 AGGAAAATTTTTGAAATTACTGCGTTC 58.452 29.630 4.63 0.24 0.00 3.95
3922 4307 8.432110 AGGAAAATTTTTGAAATTACTGCGTT 57.568 26.923 4.63 0.00 0.00 4.84
3923 4308 8.974408 GTAGGAAAATTTTTGAAATTACTGCGT 58.026 29.630 4.63 0.00 0.00 5.24
3924 4309 8.153411 CGTAGGAAAATTTTTGAAATTACTGCG 58.847 33.333 4.63 14.46 0.00 5.18
3925 4310 7.949962 GCGTAGGAAAATTTTTGAAATTACTGC 59.050 33.333 4.63 6.66 0.00 4.40
3926 4311 8.973378 TGCGTAGGAAAATTTTTGAAATTACTG 58.027 29.630 4.63 1.96 0.00 2.74
3927 4312 8.974408 GTGCGTAGGAAAATTTTTGAAATTACT 58.026 29.630 4.63 0.00 0.00 2.24
3928 4313 8.756864 TGTGCGTAGGAAAATTTTTGAAATTAC 58.243 29.630 4.63 2.13 0.00 1.89
3929 4314 8.756864 GTGTGCGTAGGAAAATTTTTGAAATTA 58.243 29.630 4.63 0.00 0.00 1.40
3930 4315 7.515998 CGTGTGCGTAGGAAAATTTTTGAAATT 60.516 33.333 4.63 0.00 0.00 1.82
3931 4316 6.074569 CGTGTGCGTAGGAAAATTTTTGAAAT 60.075 34.615 4.63 0.00 0.00 2.17
3932 4317 5.230306 CGTGTGCGTAGGAAAATTTTTGAAA 59.770 36.000 4.63 0.00 0.00 2.69
3933 4318 4.735822 CGTGTGCGTAGGAAAATTTTTGAA 59.264 37.500 4.63 0.00 0.00 2.69
3934 4319 4.283678 CGTGTGCGTAGGAAAATTTTTGA 58.716 39.130 4.63 0.00 0.00 2.69
3935 4320 3.121496 GCGTGTGCGTAGGAAAATTTTTG 60.121 43.478 4.63 0.00 40.81 2.44
3936 4321 3.047093 GCGTGTGCGTAGGAAAATTTTT 58.953 40.909 4.63 0.00 40.81 1.94
3937 4322 2.657184 GCGTGTGCGTAGGAAAATTTT 58.343 42.857 2.28 2.28 40.81 1.82
3938 4323 2.325509 GCGTGTGCGTAGGAAAATTT 57.674 45.000 0.00 0.00 40.81 1.82
3950 4335 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.000 15.81 0.00 43.20 4.57
3951 4336 1.441738 TCACCATGATCTTGCGTGTG 58.558 50.000 19.89 14.96 0.00 3.82
3952 4337 2.011947 CATCACCATGATCTTGCGTGT 58.988 47.619 19.89 6.63 34.28 4.49
3953 4338 1.268386 GCATCACCATGATCTTGCGTG 60.268 52.381 17.02 17.02 34.28 5.34
3954 4339 1.019673 GCATCACCATGATCTTGCGT 58.980 50.000 3.07 0.87 34.28 5.24
3955 4340 1.018910 TGCATCACCATGATCTTGCG 58.981 50.000 3.07 0.30 34.28 4.85
3956 4341 1.746787 TGTGCATCACCATGATCTTGC 59.253 47.619 3.07 0.00 34.28 4.01
3957 4342 2.223502 GCTGTGCATCACCATGATCTTG 60.224 50.000 0.00 1.60 34.28 3.02
3958 4343 2.022195 GCTGTGCATCACCATGATCTT 58.978 47.619 0.00 0.00 34.28 2.40
3959 4344 1.064979 TGCTGTGCATCACCATGATCT 60.065 47.619 0.00 0.00 34.28 2.75
3960 4345 1.385528 TGCTGTGCATCACCATGATC 58.614 50.000 0.00 0.00 34.28 2.92
3961 4346 1.475280 GTTGCTGTGCATCACCATGAT 59.525 47.619 0.00 0.00 38.76 2.45
3962 4347 0.883153 GTTGCTGTGCATCACCATGA 59.117 50.000 0.00 0.00 38.76 3.07
3963 4348 0.455464 CGTTGCTGTGCATCACCATG 60.455 55.000 0.00 0.00 38.76 3.66
3964 4349 0.606130 TCGTTGCTGTGCATCACCAT 60.606 50.000 0.00 0.00 38.76 3.55
3965 4350 1.227793 TCGTTGCTGTGCATCACCA 60.228 52.632 0.00 0.00 38.76 4.17
3966 4351 0.950555 TCTCGTTGCTGTGCATCACC 60.951 55.000 0.00 0.00 38.76 4.02
3967 4352 0.441533 CTCTCGTTGCTGTGCATCAC 59.558 55.000 0.00 0.00 38.76 3.06
3968 4353 0.671472 CCTCTCGTTGCTGTGCATCA 60.671 55.000 0.00 0.00 38.76 3.07
3969 4354 1.364626 CCCTCTCGTTGCTGTGCATC 61.365 60.000 0.00 0.00 38.76 3.91
3970 4355 1.376424 CCCTCTCGTTGCTGTGCAT 60.376 57.895 0.00 0.00 38.76 3.96
3971 4356 2.031012 CCCTCTCGTTGCTGTGCA 59.969 61.111 0.00 0.00 36.47 4.57
3972 4357 2.743928 CCCCTCTCGTTGCTGTGC 60.744 66.667 0.00 0.00 0.00 4.57
3973 4358 1.079543 CTCCCCTCTCGTTGCTGTG 60.080 63.158 0.00 0.00 0.00 3.66
3974 4359 1.228894 TCTCCCCTCTCGTTGCTGT 60.229 57.895 0.00 0.00 0.00 4.40
3975 4360 1.254284 ACTCTCCCCTCTCGTTGCTG 61.254 60.000 0.00 0.00 0.00 4.41
3976 4361 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
3977 4362 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
3978 4363 0.969894 AACACTCTCCCCTCTCGTTG 59.030 55.000 0.00 0.00 0.00 4.10
3979 4364 0.969894 CAACACTCTCCCCTCTCGTT 59.030 55.000 0.00 0.00 0.00 3.85
3980 4365 0.178958 ACAACACTCTCCCCTCTCGT 60.179 55.000 0.00 0.00 0.00 4.18
3981 4366 0.528470 GACAACACTCTCCCCTCTCG 59.472 60.000 0.00 0.00 0.00 4.04
3982 4367 1.931635 AGACAACACTCTCCCCTCTC 58.068 55.000 0.00 0.00 0.00 3.20
3983 4368 2.810164 GTAGACAACACTCTCCCCTCT 58.190 52.381 0.00 0.00 0.00 3.69
3984 4369 1.473278 CGTAGACAACACTCTCCCCTC 59.527 57.143 0.00 0.00 0.00 4.30
3985 4370 1.203025 ACGTAGACAACACTCTCCCCT 60.203 52.381 0.00 0.00 0.00 4.79
3986 4371 1.254954 ACGTAGACAACACTCTCCCC 58.745 55.000 0.00 0.00 0.00 4.81
3987 4372 2.163211 GGTACGTAGACAACACTCTCCC 59.837 54.545 0.00 0.00 0.00 4.30
3988 4373 2.816087 TGGTACGTAGACAACACTCTCC 59.184 50.000 0.00 0.00 0.00 3.71
3989 4374 4.225208 GTTGGTACGTAGACAACACTCTC 58.775 47.826 26.11 8.37 42.88 3.20
3990 4375 3.304257 CGTTGGTACGTAGACAACACTCT 60.304 47.826 28.28 0.00 43.38 3.24
3991 4376 2.975851 CGTTGGTACGTAGACAACACTC 59.024 50.000 28.28 12.62 43.38 3.51
3992 4377 3.004024 CGTTGGTACGTAGACAACACT 57.996 47.619 28.28 0.00 43.38 3.55
4004 4389 1.007336 CAGTCGGTCTGCGTTGGTAC 61.007 60.000 0.00 0.00 37.36 3.34
4005 4390 1.287815 CAGTCGGTCTGCGTTGGTA 59.712 57.895 0.00 0.00 37.36 3.25
4006 4391 2.029073 CAGTCGGTCTGCGTTGGT 59.971 61.111 0.00 0.00 37.36 3.67
4018 4403 2.202610 TGATCGCTTCCGCAGTCG 60.203 61.111 0.00 0.00 35.30 4.18
4019 4404 1.446099 TGTGATCGCTTCCGCAGTC 60.446 57.895 7.94 0.00 35.30 3.51
4020 4405 1.738099 GTGTGATCGCTTCCGCAGT 60.738 57.895 7.94 0.00 35.30 4.40
4021 4406 1.291184 TTGTGTGATCGCTTCCGCAG 61.291 55.000 7.94 0.00 35.30 5.18
4022 4407 1.301322 TTGTGTGATCGCTTCCGCA 60.301 52.632 7.94 0.00 35.30 5.69
4023 4408 1.132640 GTTGTGTGATCGCTTCCGC 59.867 57.895 7.94 0.00 0.00 5.54
4024 4409 1.282248 ACGTTGTGTGATCGCTTCCG 61.282 55.000 7.94 7.15 0.00 4.30
4025 4410 1.654105 CTACGTTGTGTGATCGCTTCC 59.346 52.381 7.94 0.00 0.00 3.46
4026 4411 2.592194 TCTACGTTGTGTGATCGCTTC 58.408 47.619 7.94 1.75 0.00 3.86
4027 4412 2.596452 CTCTACGTTGTGTGATCGCTT 58.404 47.619 7.94 0.00 0.00 4.68
4028 4413 1.135373 CCTCTACGTTGTGTGATCGCT 60.135 52.381 7.94 0.00 0.00 4.93
4029 4414 1.135489 TCCTCTACGTTGTGTGATCGC 60.135 52.381 0.00 0.00 0.00 4.58
4030 4415 2.913777 TCCTCTACGTTGTGTGATCG 57.086 50.000 0.00 0.00 0.00 3.69
4031 4416 4.175787 ACTTCCTCTACGTTGTGTGATC 57.824 45.455 0.00 0.00 0.00 2.92
4032 4417 4.765856 ACTACTTCCTCTACGTTGTGTGAT 59.234 41.667 0.00 0.00 0.00 3.06
4033 4418 4.139786 ACTACTTCCTCTACGTTGTGTGA 58.860 43.478 0.00 0.00 0.00 3.58
4034 4419 4.474113 GACTACTTCCTCTACGTTGTGTG 58.526 47.826 0.00 0.00 0.00 3.82
4035 4420 3.188048 CGACTACTTCCTCTACGTTGTGT 59.812 47.826 0.00 0.00 0.00 3.72
4036 4421 3.188048 ACGACTACTTCCTCTACGTTGTG 59.812 47.826 0.00 0.00 0.00 3.33
4037 4422 3.406764 ACGACTACTTCCTCTACGTTGT 58.593 45.455 0.00 0.00 0.00 3.32
4038 4423 4.389992 TGTACGACTACTTCCTCTACGTTG 59.610 45.833 0.00 0.00 34.52 4.10
4039 4424 4.569943 TGTACGACTACTTCCTCTACGTT 58.430 43.478 0.00 0.00 34.52 3.99
4040 4425 4.180057 CTGTACGACTACTTCCTCTACGT 58.820 47.826 0.00 0.00 36.52 3.57
4041 4426 3.001127 GCTGTACGACTACTTCCTCTACG 59.999 52.174 0.00 0.00 0.00 3.51
4042 4427 4.190772 AGCTGTACGACTACTTCCTCTAC 58.809 47.826 0.00 0.00 0.00 2.59
4043 4428 4.484537 AGCTGTACGACTACTTCCTCTA 57.515 45.455 0.00 0.00 0.00 2.43
4044 4429 3.353370 AGCTGTACGACTACTTCCTCT 57.647 47.619 0.00 0.00 0.00 3.69
4045 4430 3.690628 AGAAGCTGTACGACTACTTCCTC 59.309 47.826 0.00 0.00 37.96 3.71
4046 4431 3.688235 AGAAGCTGTACGACTACTTCCT 58.312 45.455 0.00 0.00 37.96 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.