Multiple sequence alignment - TraesCS6A01G415100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G415100 chr6A 100.000 5171 0 0 1 5171 614969467 614964297 0.000000e+00 9550.0
1 TraesCS6A01G415100 chr6A 80.821 1632 199 50 2750 4330 614842723 614844291 0.000000e+00 1175.0
2 TraesCS6A01G415100 chr6A 84.439 829 104 14 1655 2470 614841641 614842457 0.000000e+00 793.0
3 TraesCS6A01G415100 chr6A 82.346 878 136 12 1599 2466 614809205 614810073 0.000000e+00 745.0
4 TraesCS6A01G415100 chr6A 93.563 435 20 6 359 789 614972547 614972117 4.370000e-180 641.0
5 TraesCS6A01G415100 chr6A 83.980 593 70 14 2782 3369 614810459 614811031 3.520000e-151 545.0
6 TraesCS6A01G415100 chr6A 79.141 815 105 24 3487 4240 614811104 614811914 2.150000e-138 503.0
7 TraesCS6A01G415100 chr6A 84.052 232 23 7 3612 3832 614807246 614807474 1.460000e-50 211.0
8 TraesCS6A01G415100 chr6A 100.000 28 0 0 4764 4791 614964643 614964616 9.000000e-03 52.8
9 TraesCS6A01G415100 chr6A 100.000 28 0 0 4825 4852 614964704 614964677 9.000000e-03 52.8
10 TraesCS6A01G415100 chr6D 93.788 3107 105 25 1474 4527 470104728 470101657 0.000000e+00 4588.0
11 TraesCS6A01G415100 chr6D 79.669 1815 220 65 2584 4330 470047153 470048886 0.000000e+00 1170.0
12 TraesCS6A01G415100 chr6D 95.260 654 26 4 4523 5171 470101306 470100653 0.000000e+00 1031.0
13 TraesCS6A01G415100 chr6D 84.198 829 106 15 1655 2470 470052773 470053589 0.000000e+00 782.0
14 TraesCS6A01G415100 chr6D 82.902 889 126 18 1596 2470 470046159 470047035 0.000000e+00 776.0
15 TraesCS6A01G415100 chr6D 86.712 730 21 15 786 1480 470110419 470109731 0.000000e+00 741.0
16 TraesCS6A01G415100 chr6D 94.103 390 22 1 366 754 470111063 470110674 4.460000e-165 592.0
17 TraesCS6A01G415100 chr6D 94.872 234 9 2 4939 5171 470293915 470294146 3.810000e-96 363.0
18 TraesCS6A01G415100 chr6D 85.039 254 20 4 4095 4330 470290737 470290990 5.170000e-60 243.0
19 TraesCS6A01G415100 chr6D 80.508 236 24 10 1296 1517 470141553 470141326 1.490000e-35 161.0
20 TraesCS6A01G415100 chr6D 95.876 97 3 1 5075 5171 470093199 470093294 6.930000e-34 156.0
21 TraesCS6A01G415100 chr6D 89.216 102 8 2 4382 4482 470290998 470291097 1.960000e-24 124.0
22 TraesCS6A01G415100 chr6D 77.778 117 17 7 4352 4461 470050936 470051050 4.320000e-06 63.9
23 TraesCS6A01G415100 chr6D 97.297 37 1 0 4791 4827 470293544 470293580 4.320000e-06 63.9
24 TraesCS6A01G415100 chr6D 100.000 28 0 0 4825 4852 470101061 470101034 9.000000e-03 52.8
25 TraesCS6A01G415100 chrUn 79.016 1544 212 48 2777 4261 310058006 310056516 0.000000e+00 953.0
26 TraesCS6A01G415100 chr3B 79.661 885 146 24 1600 2469 43057223 43058088 1.590000e-169 606.0
27 TraesCS6A01G415100 chr3B 78.404 213 30 10 574 784 740055947 740056145 1.960000e-24 124.0
28 TraesCS6A01G415100 chr7A 97.701 348 8 0 1 348 691594810 691594463 2.660000e-167 599.0
29 TraesCS6A01G415100 chr7A 97.414 348 6 2 1 348 63598811 63598467 1.600000e-164 590.0
30 TraesCS6A01G415100 chr7A 84.146 164 26 0 1894 2057 176278192 176278355 5.360000e-35 159.0
31 TraesCS6A01G415100 chr7A 77.523 218 33 7 557 773 694494993 694494791 3.270000e-22 117.0
32 TraesCS6A01G415100 chr2A 97.701 348 8 0 1 348 696288947 696289294 2.660000e-167 599.0
33 TraesCS6A01G415100 chr2A 86.842 76 6 3 3248 3321 756947429 756947356 1.190000e-11 82.4
34 TraesCS6A01G415100 chr3D 97.436 351 6 1 1 348 32366583 32366933 3.450000e-166 595.0
35 TraesCS6A01G415100 chr5D 97.414 348 6 1 1 348 435226850 435227194 1.600000e-164 590.0
36 TraesCS6A01G415100 chr2D 97.151 351 7 1 1 348 556371584 556371934 1.600000e-164 590.0
37 TraesCS6A01G415100 chr2D 97.151 351 7 1 1 348 599594813 599595163 1.600000e-164 590.0
38 TraesCS6A01G415100 chr2D 77.826 230 31 8 559 784 42583001 42583214 1.960000e-24 124.0
39 TraesCS6A01G415100 chr2D 85.567 97 7 5 680 773 346045208 346045300 1.530000e-15 95.3
40 TraesCS6A01G415100 chr3A 97.126 348 10 0 1 348 71542384 71542731 5.770000e-164 588.0
41 TraesCS6A01G415100 chr4D 96.866 351 8 1 1 348 434992240 434991890 7.460000e-163 584.0
42 TraesCS6A01G415100 chr6B 83.362 577 71 11 2751 3322 716264133 716264689 1.280000e-140 510.0
43 TraesCS6A01G415100 chr6B 85.208 480 41 7 3475 3924 716264821 716265300 2.820000e-127 466.0
44 TraesCS6A01G415100 chr6B 82.288 542 84 6 1655 2196 716263196 716263725 4.720000e-125 459.0
45 TraesCS6A01G415100 chr6B 79.512 205 18 13 1161 1356 716113947 716113758 1.960000e-24 124.0
46 TraesCS6A01G415100 chr6B 81.529 157 16 7 4595 4743 716424041 716424192 3.270000e-22 117.0
47 TraesCS6A01G415100 chr6B 77.720 193 25 10 4144 4330 716265347 716265527 9.160000e-18 102.0
48 TraesCS6A01G415100 chr7D 79.121 273 48 6 1794 2057 174296159 174296431 4.110000e-41 180.0
49 TraesCS6A01G415100 chr7B 85.366 164 24 0 1894 2057 138755646 138755809 2.480000e-38 171.0
50 TraesCS6A01G415100 chr1B 79.545 220 25 10 557 773 54875785 54875987 6.980000e-29 139.0
51 TraesCS6A01G415100 chr4A 78.440 218 27 9 574 787 729526401 729526200 1.960000e-24 124.0
52 TraesCS6A01G415100 chr2B 86.842 76 6 3 3248 3321 767381877 767381950 1.190000e-11 82.4
53 TraesCS6A01G415100 chr4B 88.235 68 4 2 1180 1243 315314435 315314502 1.540000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G415100 chr6A 614964297 614969467 5170 True 9550.000 9550 100.000000 1 5171 1 chr6A.!!$R1 5170
1 TraesCS6A01G415100 chr6A 614841641 614844291 2650 False 984.000 1175 82.630000 1655 4330 2 chr6A.!!$F2 2675
2 TraesCS6A01G415100 chr6A 614807246 614811914 4668 False 501.000 745 82.379750 1599 4240 4 chr6A.!!$F1 2641
3 TraesCS6A01G415100 chr6D 470100653 470104728 4075 True 1890.600 4588 96.349333 1474 5171 3 chr6D.!!$R2 3697
4 TraesCS6A01G415100 chr6D 470046159 470053589 7430 False 697.975 1170 81.136750 1596 4461 4 chr6D.!!$F2 2865
5 TraesCS6A01G415100 chr6D 470109731 470111063 1332 True 666.500 741 90.407500 366 1480 2 chr6D.!!$R3 1114
6 TraesCS6A01G415100 chrUn 310056516 310058006 1490 True 953.000 953 79.016000 2777 4261 1 chrUn.!!$R1 1484
7 TraesCS6A01G415100 chr3B 43057223 43058088 865 False 606.000 606 79.661000 1600 2469 1 chr3B.!!$F1 869
8 TraesCS6A01G415100 chr6B 716263196 716265527 2331 False 384.250 510 82.144500 1655 4330 4 chr6B.!!$F2 2675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 99 0.032615 GAGGAGGAGGAGCAGGAGAA 60.033 60.000 0.00 0.0 0.00 2.87 F
1042 1295 0.035630 CTGCCACCTCCCTTCTCTTG 60.036 60.000 0.00 0.0 0.00 3.02 F
1121 1374 1.445095 CGAGCTCCCATCTCCCTTG 59.555 63.158 8.47 0.0 0.00 3.61 F
2071 2452 0.835971 AAGGCCGCTTCCCCAAAATT 60.836 50.000 0.00 0.0 0.00 1.82 F
2833 3336 0.181587 TCCTTGTCCGCAACAGGAAA 59.818 50.000 0.49 0.0 42.77 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2061 2442 0.114954 AGCCAGCAGAATTTTGGGGA 59.885 50.0 0.00 0.00 32.53 4.81 R
2062 2443 0.248289 CAGCCAGCAGAATTTTGGGG 59.752 55.0 0.00 0.00 32.53 4.96 R
2090 2471 0.249911 ATACCGGGAATGAAGAGCGC 60.250 55.0 6.32 0.00 0.00 5.92 R
3142 3648 0.386985 GTCCGTGGTGAGAACGAGAC 60.387 60.0 0.00 0.54 43.68 3.36 R
4564 7985 0.652071 ATGTATCGTGTGCATGCGTG 59.348 50.0 14.09 0.09 31.45 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.376335 AGATGAAGATGATGAGGATTCAGAA 57.624 36.000 0.00 0.00 36.61 3.02
27 28 6.818233 TGAAGATGATGAGGATTCAGAAGAG 58.182 40.000 0.00 0.00 36.61 2.85
28 29 5.811796 AGATGATGAGGATTCAGAAGAGG 57.188 43.478 0.00 0.00 36.61 3.69
29 30 5.465901 AGATGATGAGGATTCAGAAGAGGA 58.534 41.667 0.00 0.00 36.61 3.71
30 31 5.904169 AGATGATGAGGATTCAGAAGAGGAA 59.096 40.000 0.00 0.00 36.61 3.36
31 32 5.350504 TGATGAGGATTCAGAAGAGGAAC 57.649 43.478 0.00 0.00 36.61 3.62
32 33 4.779489 TGATGAGGATTCAGAAGAGGAACA 59.221 41.667 0.00 0.00 36.61 3.18
33 34 5.249163 TGATGAGGATTCAGAAGAGGAACAA 59.751 40.000 0.00 0.00 36.61 2.83
34 35 5.768980 TGAGGATTCAGAAGAGGAACAAT 57.231 39.130 0.00 0.00 0.00 2.71
37 38 7.106239 TGAGGATTCAGAAGAGGAACAATTAC 58.894 38.462 0.00 0.00 0.00 1.89
39 40 7.637511 AGGATTCAGAAGAGGAACAATTACAT 58.362 34.615 0.00 0.00 0.00 2.29
40 41 8.112183 AGGATTCAGAAGAGGAACAATTACATT 58.888 33.333 0.00 0.00 0.00 2.71
41 42 9.396022 GGATTCAGAAGAGGAACAATTACATTA 57.604 33.333 0.00 0.00 0.00 1.90
47 48 9.853177 AGAAGAGGAACAATTACATTATAAGGG 57.147 33.333 1.74 0.00 0.00 3.95
48 49 9.628500 GAAGAGGAACAATTACATTATAAGGGT 57.372 33.333 1.74 0.31 0.00 4.34
49 50 8.980481 AGAGGAACAATTACATTATAAGGGTG 57.020 34.615 1.74 0.00 0.00 4.61
50 51 8.778059 AGAGGAACAATTACATTATAAGGGTGA 58.222 33.333 1.74 0.00 0.00 4.02
54 55 9.174166 GAACAATTACATTATAAGGGTGACACT 57.826 33.333 5.39 0.00 0.00 3.55
55 56 8.506168 ACAATTACATTATAAGGGTGACACTG 57.494 34.615 5.39 0.00 0.00 3.66
57 58 8.830580 CAATTACATTATAAGGGTGACACTGAG 58.169 37.037 5.39 0.00 0.00 3.35
60 61 5.250774 ACATTATAAGGGTGACACTGAGGTT 59.749 40.000 5.39 0.00 0.00 3.50
61 62 3.703001 ATAAGGGTGACACTGAGGTTG 57.297 47.619 5.39 0.00 0.00 3.77
62 63 1.507140 AAGGGTGACACTGAGGTTGA 58.493 50.000 5.39 0.00 0.00 3.18
64 65 0.035458 GGGTGACACTGAGGTTGAGG 59.965 60.000 5.39 0.00 0.00 3.86
65 66 1.048601 GGTGACACTGAGGTTGAGGA 58.951 55.000 5.39 0.00 0.00 3.71
67 68 1.689273 GTGACACTGAGGTTGAGGACT 59.311 52.381 0.00 0.00 0.00 3.85
69 70 2.103094 TGACACTGAGGTTGAGGACTTG 59.897 50.000 0.00 0.00 0.00 3.16
72 73 3.054361 ACACTGAGGTTGAGGACTTGTTT 60.054 43.478 0.00 0.00 0.00 2.83
73 74 3.313526 CACTGAGGTTGAGGACTTGTTTG 59.686 47.826 0.00 0.00 0.00 2.93
75 76 3.541632 TGAGGTTGAGGACTTGTTTGAC 58.458 45.455 0.00 0.00 0.00 3.18
77 78 4.137543 GAGGTTGAGGACTTGTTTGACAT 58.862 43.478 0.00 0.00 0.00 3.06
78 79 3.885297 AGGTTGAGGACTTGTTTGACATG 59.115 43.478 0.00 0.00 0.00 3.21
79 80 3.004734 GGTTGAGGACTTGTTTGACATGG 59.995 47.826 0.00 0.00 0.00 3.66
80 81 3.855255 TGAGGACTTGTTTGACATGGA 57.145 42.857 0.00 0.00 0.00 3.41
81 82 3.743521 TGAGGACTTGTTTGACATGGAG 58.256 45.455 0.00 0.00 0.00 3.86
82 83 3.077359 GAGGACTTGTTTGACATGGAGG 58.923 50.000 0.00 0.00 0.00 4.30
83 84 2.711009 AGGACTTGTTTGACATGGAGGA 59.289 45.455 0.00 0.00 0.00 3.71
86 87 2.711009 ACTTGTTTGACATGGAGGAGGA 59.289 45.455 0.00 0.00 0.00 3.71
87 88 3.244700 ACTTGTTTGACATGGAGGAGGAG 60.245 47.826 0.00 0.00 0.00 3.69
88 89 1.630369 TGTTTGACATGGAGGAGGAGG 59.370 52.381 0.00 0.00 0.00 4.30
89 90 1.909302 GTTTGACATGGAGGAGGAGGA 59.091 52.381 0.00 0.00 0.00 3.71
91 92 0.689080 TGACATGGAGGAGGAGGAGC 60.689 60.000 0.00 0.00 0.00 4.70
92 93 0.689080 GACATGGAGGAGGAGGAGCA 60.689 60.000 0.00 0.00 0.00 4.26
93 94 0.690411 ACATGGAGGAGGAGGAGCAG 60.690 60.000 0.00 0.00 0.00 4.24
94 95 1.074623 ATGGAGGAGGAGGAGCAGG 60.075 63.158 0.00 0.00 0.00 4.85
95 96 1.597905 ATGGAGGAGGAGGAGCAGGA 61.598 60.000 0.00 0.00 0.00 3.86
96 97 1.457455 GGAGGAGGAGGAGCAGGAG 60.457 68.421 0.00 0.00 0.00 3.69
97 98 1.618030 GAGGAGGAGGAGCAGGAGA 59.382 63.158 0.00 0.00 0.00 3.71
98 99 0.032615 GAGGAGGAGGAGCAGGAGAA 60.033 60.000 0.00 0.00 0.00 2.87
100 101 1.048160 GGAGGAGGAGCAGGAGAAGG 61.048 65.000 0.00 0.00 0.00 3.46
104 105 1.621072 GGAGGAGCAGGAGAAGGAGAA 60.621 57.143 0.00 0.00 0.00 2.87
106 107 2.168313 GAGGAGCAGGAGAAGGAGAAAG 59.832 54.545 0.00 0.00 0.00 2.62
108 109 2.771372 GGAGCAGGAGAAGGAGAAAGAT 59.229 50.000 0.00 0.00 0.00 2.40
109 110 3.432046 GGAGCAGGAGAAGGAGAAAGATG 60.432 52.174 0.00 0.00 0.00 2.90
110 111 3.448934 AGCAGGAGAAGGAGAAAGATGA 58.551 45.455 0.00 0.00 0.00 2.92
111 112 4.039339 AGCAGGAGAAGGAGAAAGATGAT 58.961 43.478 0.00 0.00 0.00 2.45
112 113 4.128643 GCAGGAGAAGGAGAAAGATGATG 58.871 47.826 0.00 0.00 0.00 3.07
113 114 4.141756 GCAGGAGAAGGAGAAAGATGATGA 60.142 45.833 0.00 0.00 0.00 2.92
114 115 5.603596 CAGGAGAAGGAGAAAGATGATGAG 58.396 45.833 0.00 0.00 0.00 2.90
116 117 4.408596 GGAGAAGGAGAAAGATGATGAGGT 59.591 45.833 0.00 0.00 0.00 3.85
117 118 5.453198 GGAGAAGGAGAAAGATGATGAGGTC 60.453 48.000 0.00 0.00 0.00 3.85
118 119 5.028802 AGAAGGAGAAAGATGATGAGGTCA 58.971 41.667 0.00 0.00 42.06 4.02
119 120 5.486775 AGAAGGAGAAAGATGATGAGGTCAA 59.513 40.000 0.00 0.00 40.97 3.18
121 122 5.682659 AGGAGAAAGATGATGAGGTCAATG 58.317 41.667 0.00 0.00 40.97 2.82
123 124 5.884792 GGAGAAAGATGATGAGGTCAATGTT 59.115 40.000 0.00 0.00 40.97 2.71
124 125 6.183360 GGAGAAAGATGATGAGGTCAATGTTG 60.183 42.308 0.00 0.00 40.97 3.33
126 127 6.718454 AGAAAGATGATGAGGTCAATGTTGTT 59.282 34.615 0.00 0.00 40.97 2.83
127 128 5.892160 AGATGATGAGGTCAATGTTGTTG 57.108 39.130 0.00 0.00 40.97 3.33
128 129 3.921119 TGATGAGGTCAATGTTGTTGC 57.079 42.857 0.00 0.00 32.78 4.17
129 130 3.220940 TGATGAGGTCAATGTTGTTGCA 58.779 40.909 0.00 0.00 32.78 4.08
131 132 3.435105 TGAGGTCAATGTTGTTGCAAC 57.565 42.857 22.83 22.83 0.00 4.17
132 133 2.757314 TGAGGTCAATGTTGTTGCAACA 59.243 40.909 27.96 27.96 37.08 3.33
134 135 3.023119 AGGTCAATGTTGTTGCAACAGA 58.977 40.909 29.50 20.77 40.50 3.41
136 137 3.798337 GGTCAATGTTGTTGCAACAGAAG 59.202 43.478 29.50 19.05 40.50 2.85
137 138 4.439974 GGTCAATGTTGTTGCAACAGAAGA 60.440 41.667 29.50 20.71 40.50 2.87
138 139 5.101628 GTCAATGTTGTTGCAACAGAAGAA 58.898 37.500 29.50 14.16 40.50 2.52
140 141 3.149436 TGTTGTTGCAACAGAAGAAGC 57.851 42.857 29.50 11.65 40.50 3.86
141 142 2.491298 TGTTGTTGCAACAGAAGAAGCA 59.509 40.909 29.50 14.04 40.50 3.91
142 143 2.849880 TGTTGCAACAGAAGAAGCAC 57.150 45.000 27.96 0.00 36.62 4.40
143 144 1.405105 TGTTGCAACAGAAGAAGCACC 59.595 47.619 27.96 0.00 36.62 5.01
144 145 1.405105 GTTGCAACAGAAGAAGCACCA 59.595 47.619 24.52 0.00 36.62 4.17
146 147 2.309613 TGCAACAGAAGAAGCACCAAT 58.690 42.857 0.00 0.00 31.05 3.16
147 148 2.034939 TGCAACAGAAGAAGCACCAATG 59.965 45.455 0.00 0.00 31.05 2.82
148 149 2.608752 GCAACAGAAGAAGCACCAATGG 60.609 50.000 0.00 0.00 0.00 3.16
149 150 2.886523 CAACAGAAGAAGCACCAATGGA 59.113 45.455 6.16 0.00 0.00 3.41
150 151 3.228188 ACAGAAGAAGCACCAATGGAA 57.772 42.857 6.16 0.00 0.00 3.53
151 152 3.565307 ACAGAAGAAGCACCAATGGAAA 58.435 40.909 6.16 0.00 0.00 3.13
152 153 3.960102 ACAGAAGAAGCACCAATGGAAAA 59.040 39.130 6.16 0.00 0.00 2.29
153 154 4.405358 ACAGAAGAAGCACCAATGGAAAAA 59.595 37.500 6.16 0.00 0.00 1.94
154 155 4.746611 CAGAAGAAGCACCAATGGAAAAAC 59.253 41.667 6.16 0.00 0.00 2.43
155 156 3.751479 AGAAGCACCAATGGAAAAACC 57.249 42.857 6.16 0.00 39.54 3.27
182 183 1.063183 AAGAGGAAGAAGCTGGCAGT 58.937 50.000 17.16 0.00 0.00 4.40
183 184 1.063183 AGAGGAAGAAGCTGGCAGTT 58.937 50.000 17.16 7.32 0.00 3.16
184 185 2.260822 AGAGGAAGAAGCTGGCAGTTA 58.739 47.619 17.16 0.00 0.00 2.24
185 186 2.235898 AGAGGAAGAAGCTGGCAGTTAG 59.764 50.000 17.16 0.00 0.00 2.34
187 188 1.279271 GGAAGAAGCTGGCAGTTAGGA 59.721 52.381 17.16 0.00 0.00 2.94
188 189 2.626840 GAAGAAGCTGGCAGTTAGGAG 58.373 52.381 17.16 0.00 0.00 3.69
190 191 1.830477 AGAAGCTGGCAGTTAGGAGAG 59.170 52.381 17.16 0.00 0.00 3.20
195 196 1.690985 GGCAGTTAGGAGAGGCCCT 60.691 63.158 0.00 0.00 38.70 5.19
196 197 0.398664 GGCAGTTAGGAGAGGCCCTA 60.399 60.000 0.00 0.00 38.70 3.53
197 198 0.753867 GCAGTTAGGAGAGGCCCTAC 59.246 60.000 0.00 0.00 38.45 3.18
198 199 1.689892 GCAGTTAGGAGAGGCCCTACT 60.690 57.143 10.47 10.47 38.45 2.57
201 202 3.117436 CAGTTAGGAGAGGCCCTACTACT 60.117 52.174 11.58 11.28 38.03 2.57
204 205 2.067386 AGGAGAGGCCCTACTACTAGG 58.933 57.143 0.00 0.00 39.67 3.02
205 206 2.064215 GGAGAGGCCCTACTACTAGGA 58.936 57.143 0.00 0.00 42.34 2.94
206 207 2.224843 GGAGAGGCCCTACTACTAGGAC 60.225 59.091 0.00 0.00 42.34 3.85
207 208 2.442502 GAGAGGCCCTACTACTAGGACA 59.557 54.545 0.00 0.00 42.34 4.02
208 209 2.175284 AGAGGCCCTACTACTAGGACAC 59.825 54.545 0.00 0.00 42.34 3.67
209 210 1.928077 AGGCCCTACTACTAGGACACA 59.072 52.381 0.00 0.00 42.34 3.72
210 211 2.518834 AGGCCCTACTACTAGGACACAT 59.481 50.000 0.00 0.00 42.34 3.21
213 214 3.958798 GCCCTACTACTAGGACACATTCA 59.041 47.826 0.00 0.00 42.34 2.57
215 216 5.452077 GCCCTACTACTAGGACACATTCAAG 60.452 48.000 0.00 0.00 42.34 3.02
216 217 5.657302 CCCTACTACTAGGACACATTCAAGT 59.343 44.000 0.00 0.00 42.34 3.16
217 218 6.405953 CCCTACTACTAGGACACATTCAAGTG 60.406 46.154 0.00 0.00 42.34 3.16
226 227 3.631145 CACATTCAAGTGTGTTGGAGG 57.369 47.619 0.00 0.00 43.43 4.30
227 228 3.213506 CACATTCAAGTGTGTTGGAGGA 58.786 45.455 0.00 0.00 43.43 3.71
229 230 2.638480 TTCAAGTGTGTTGGAGGAGG 57.362 50.000 0.00 0.00 0.00 4.30
230 231 1.507140 TCAAGTGTGTTGGAGGAGGT 58.493 50.000 0.00 0.00 0.00 3.85
232 233 0.179018 AAGTGTGTTGGAGGAGGTGC 60.179 55.000 0.00 0.00 0.00 5.01
233 234 1.148273 GTGTGTTGGAGGAGGTGCA 59.852 57.895 0.00 0.00 0.00 4.57
234 235 0.465460 GTGTGTTGGAGGAGGTGCAA 60.465 55.000 0.00 0.00 33.36 4.08
251 252 4.488879 GTGCAACCTGATTTCATTCCTTC 58.511 43.478 0.00 0.00 0.00 3.46
252 253 4.022068 GTGCAACCTGATTTCATTCCTTCA 60.022 41.667 0.00 0.00 0.00 3.02
253 254 4.773674 TGCAACCTGATTTCATTCCTTCAT 59.226 37.500 0.00 0.00 0.00 2.57
254 255 5.105635 TGCAACCTGATTTCATTCCTTCATC 60.106 40.000 0.00 0.00 0.00 2.92
256 257 6.561614 CAACCTGATTTCATTCCTTCATCAG 58.438 40.000 0.00 0.00 40.34 2.90
257 258 6.070951 ACCTGATTTCATTCCTTCATCAGA 57.929 37.500 8.69 0.00 42.34 3.27
258 259 6.670617 ACCTGATTTCATTCCTTCATCAGAT 58.329 36.000 8.69 0.00 42.34 2.90
259 260 6.546403 ACCTGATTTCATTCCTTCATCAGATG 59.454 38.462 3.71 3.71 42.34 2.90
260 261 6.771267 CCTGATTTCATTCCTTCATCAGATGA 59.229 38.462 9.21 9.21 42.34 2.92
273 274 5.866207 TCATCAGATGAAGAAGATGATGGG 58.134 41.667 10.93 0.00 44.65 4.00
274 275 5.368816 TCATCAGATGAAGAAGATGATGGGT 59.631 40.000 10.93 0.00 44.65 4.51
276 277 5.434408 TCAGATGAAGAAGATGATGGGTTG 58.566 41.667 0.00 0.00 0.00 3.77
279 280 3.349927 TGAAGAAGATGATGGGTTGCTG 58.650 45.455 0.00 0.00 0.00 4.41
281 282 3.446442 AGAAGATGATGGGTTGCTGTT 57.554 42.857 0.00 0.00 0.00 3.16
282 283 3.771216 AGAAGATGATGGGTTGCTGTTT 58.229 40.909 0.00 0.00 0.00 2.83
283 284 3.508793 AGAAGATGATGGGTTGCTGTTTG 59.491 43.478 0.00 0.00 0.00 2.93
285 286 3.087031 AGATGATGGGTTGCTGTTTGAG 58.913 45.455 0.00 0.00 0.00 3.02
286 287 1.619654 TGATGGGTTGCTGTTTGAGG 58.380 50.000 0.00 0.00 0.00 3.86
287 288 1.144708 TGATGGGTTGCTGTTTGAGGA 59.855 47.619 0.00 0.00 0.00 3.71
288 289 2.225091 TGATGGGTTGCTGTTTGAGGAT 60.225 45.455 0.00 0.00 0.00 3.24
289 290 1.619654 TGGGTTGCTGTTTGAGGATG 58.380 50.000 0.00 0.00 0.00 3.51
290 291 1.144708 TGGGTTGCTGTTTGAGGATGA 59.855 47.619 0.00 0.00 0.00 2.92
291 292 2.225091 TGGGTTGCTGTTTGAGGATGAT 60.225 45.455 0.00 0.00 0.00 2.45
292 293 2.165030 GGGTTGCTGTTTGAGGATGATG 59.835 50.000 0.00 0.00 0.00 3.07
293 294 3.084039 GGTTGCTGTTTGAGGATGATGA 58.916 45.455 0.00 0.00 0.00 2.92
296 297 4.224991 TGCTGTTTGAGGATGATGATGA 57.775 40.909 0.00 0.00 0.00 2.92
297 298 4.788679 TGCTGTTTGAGGATGATGATGAT 58.211 39.130 0.00 0.00 0.00 2.45
298 299 4.578928 TGCTGTTTGAGGATGATGATGATG 59.421 41.667 0.00 0.00 0.00 3.07
299 300 4.023107 GCTGTTTGAGGATGATGATGATGG 60.023 45.833 0.00 0.00 0.00 3.51
300 301 5.374071 CTGTTTGAGGATGATGATGATGGA 58.626 41.667 0.00 0.00 0.00 3.41
301 302 5.128205 TGTTTGAGGATGATGATGATGGAC 58.872 41.667 0.00 0.00 0.00 4.02
302 303 5.128205 GTTTGAGGATGATGATGATGGACA 58.872 41.667 0.00 0.00 0.00 4.02
304 305 4.906618 TGAGGATGATGATGATGGACATG 58.093 43.478 0.00 0.00 39.56 3.21
305 306 4.595781 TGAGGATGATGATGATGGACATGA 59.404 41.667 0.00 0.00 39.56 3.07
306 307 5.167303 AGGATGATGATGATGGACATGAG 57.833 43.478 0.00 0.00 39.56 2.90
307 308 3.690139 GGATGATGATGATGGACATGAGC 59.310 47.826 0.00 0.00 39.56 4.26
309 310 2.440253 TGATGATGATGGACATGAGCCA 59.560 45.455 13.05 13.05 39.56 4.75
310 311 3.117813 TGATGATGATGGACATGAGCCAA 60.118 43.478 14.32 2.15 39.56 4.52
312 313 3.219281 TGATGATGGACATGAGCCAATG 58.781 45.455 14.32 0.00 39.56 2.82
320 321 2.880443 ACATGAGCCAATGTCCTTTGT 58.120 42.857 0.00 0.00 35.92 2.83
322 323 3.256631 ACATGAGCCAATGTCCTTTGTTC 59.743 43.478 0.00 0.00 35.92 3.18
324 325 4.365514 TGAGCCAATGTCCTTTGTTCTA 57.634 40.909 0.00 0.00 0.00 2.10
325 326 4.072131 TGAGCCAATGTCCTTTGTTCTAC 58.928 43.478 0.00 0.00 0.00 2.59
326 327 3.421844 AGCCAATGTCCTTTGTTCTACC 58.578 45.455 0.00 0.00 0.00 3.18
328 329 3.761897 CCAATGTCCTTTGTTCTACCCA 58.238 45.455 0.00 0.00 0.00 4.51
331 332 5.278957 CCAATGTCCTTTGTTCTACCCAAAG 60.279 44.000 6.02 6.02 45.30 2.77
347 348 1.210722 CAAAGGGAGGAAGAGTAGGGC 59.789 57.143 0.00 0.00 0.00 5.19
348 349 0.417841 AAGGGAGGAAGAGTAGGGCA 59.582 55.000 0.00 0.00 0.00 5.36
349 350 0.325765 AGGGAGGAAGAGTAGGGCAC 60.326 60.000 0.00 0.00 0.00 5.01
350 351 1.677637 GGGAGGAAGAGTAGGGCACG 61.678 65.000 0.00 0.00 0.00 5.34
352 353 1.183549 GAGGAAGAGTAGGGCACGAA 58.816 55.000 0.00 0.00 0.00 3.85
353 354 0.896226 AGGAAGAGTAGGGCACGAAC 59.104 55.000 0.00 0.00 0.00 3.95
354 355 0.896226 GGAAGAGTAGGGCACGAACT 59.104 55.000 0.00 0.00 0.00 3.01
357 358 0.608640 AGAGTAGGGCACGAACTTGG 59.391 55.000 0.00 0.00 0.00 3.61
359 360 0.763035 AGTAGGGCACGAACTTGGTT 59.237 50.000 0.00 0.00 0.00 3.67
360 361 1.154197 GTAGGGCACGAACTTGGTTC 58.846 55.000 0.00 0.82 38.97 3.62
401 402 3.857052 TCGTTCGATAACAAGGCATCTT 58.143 40.909 0.00 0.00 35.16 2.40
406 407 5.592104 TCGATAACAAGGCATCTTCAGTA 57.408 39.130 0.00 0.00 0.00 2.74
515 517 5.101628 TGATACAAAAATGAGCCAAATCGC 58.898 37.500 0.00 0.00 0.00 4.58
601 603 3.220507 TGGTGTACAAACTACCGATCG 57.779 47.619 8.51 8.51 37.29 3.69
615 617 2.858344 ACCGATCGAAAATTCTAGCACG 59.142 45.455 18.66 0.00 0.00 5.34
653 655 8.964420 TTACACAACAAGCTATAATTGAAAGC 57.036 30.769 6.26 0.00 36.48 3.51
661 663 2.124011 ATAATTGAAAGCGCGCCATG 57.876 45.000 30.33 0.00 0.00 3.66
791 1016 8.972662 TCTCTTTGTATGATCATTATCCCCTA 57.027 34.615 14.65 0.00 0.00 3.53
796 1021 7.437713 TGTATGATCATTATCCCCTATGGTC 57.562 40.000 14.65 0.00 33.46 4.02
815 1040 3.638592 AAATCCTGGTTCCGCCCCG 62.639 63.158 0.00 0.00 36.04 5.73
850 1076 6.722972 CTTTCACAAAGTTTCTTCGATGTG 57.277 37.500 5.39 5.39 39.50 3.21
927 1153 5.069648 ACCTCGATCTTATCTTGAAGCATCA 59.930 40.000 0.00 0.00 0.00 3.07
985 1211 1.592543 CCCTGTTTTCTTTTTGCGCAC 59.407 47.619 11.12 0.00 0.00 5.34
1042 1295 0.035630 CTGCCACCTCCCTTCTCTTG 60.036 60.000 0.00 0.00 0.00 3.02
1121 1374 1.445095 CGAGCTCCCATCTCCCTTG 59.555 63.158 8.47 0.00 0.00 3.61
1231 1484 2.269241 CCCTCGTTCCCTGCTTCC 59.731 66.667 0.00 0.00 0.00 3.46
1402 1655 2.421739 GTCAGGCCGACACTGTGT 59.578 61.111 14.23 14.23 44.69 3.72
1491 1755 3.686726 AGCTAGCTGTTCAGTGCAATAAC 59.313 43.478 18.57 0.00 0.00 1.89
1493 1757 2.766313 AGCTGTTCAGTGCAATAACGA 58.234 42.857 0.00 0.00 0.00 3.85
1495 1759 3.753272 AGCTGTTCAGTGCAATAACGAAT 59.247 39.130 0.00 0.00 0.00 3.34
1496 1760 4.216257 AGCTGTTCAGTGCAATAACGAATT 59.784 37.500 0.00 0.00 0.00 2.17
1665 2025 2.512515 GATGGCGGGTGTCTCAGC 60.513 66.667 0.00 0.00 0.00 4.26
2052 2433 2.290260 ACGTCTTCTGGAAATCATGGCA 60.290 45.455 0.00 0.00 0.00 4.92
2071 2452 0.835971 AAGGCCGCTTCCCCAAAATT 60.836 50.000 0.00 0.00 0.00 1.82
2079 2460 0.975887 TTCCCCAAAATTCTGCTGGC 59.024 50.000 0.00 0.00 0.00 4.85
2087 2468 1.874345 AATTCTGCTGGCTGCTGCAC 61.874 55.000 17.89 7.44 43.37 4.57
2088 2469 3.778097 TTCTGCTGGCTGCTGCACA 62.778 57.895 17.89 11.50 43.37 4.57
2090 2471 3.268965 CTGCTGGCTGCTGCACAAG 62.269 63.158 17.89 11.98 43.37 3.16
2101 2482 0.520404 CTGCACAAGCGCTCTTCATT 59.480 50.000 12.06 0.00 46.23 2.57
2110 2491 1.000506 GCGCTCTTCATTCCCGGTATA 59.999 52.381 0.00 0.00 0.00 1.47
2172 2553 2.440409 CATTAACAGCCTGGTGAGCTT 58.560 47.619 2.95 0.00 38.95 3.74
2173 2554 1.896220 TTAACAGCCTGGTGAGCTTG 58.104 50.000 2.95 0.00 38.95 4.01
2212 2593 5.560724 AGGTCAATACACACACATAAGCTT 58.439 37.500 3.48 3.48 0.00 3.74
2214 2595 6.818644 AGGTCAATACACACACATAAGCTTAG 59.181 38.462 12.54 6.83 0.00 2.18
2268 2649 0.541863 ACAAGTCCTATCGGGGCAAG 59.458 55.000 0.00 0.00 43.45 4.01
2456 2838 4.530946 CCTTCCTACTCCTCTACACCAAAA 59.469 45.833 0.00 0.00 0.00 2.44
2458 2840 5.740290 TCCTACTCCTCTACACCAAAAAG 57.260 43.478 0.00 0.00 0.00 2.27
2536 2918 0.389948 ACTTCGAACTTAGGGCGCAG 60.390 55.000 10.83 0.00 0.00 5.18
2588 3028 6.018180 CCGTTTATTAGCTTCCTACATTCCAC 60.018 42.308 0.00 0.00 0.00 4.02
2762 3205 4.813161 GGTCATCAGATATGGTGTCAACAG 59.187 45.833 0.00 0.00 0.00 3.16
2774 3217 2.545946 GTGTCAACAGAAGTGAAGCCTC 59.454 50.000 0.00 0.00 0.00 4.70
2775 3278 1.795286 GTCAACAGAAGTGAAGCCTCG 59.205 52.381 0.00 0.00 0.00 4.63
2833 3336 0.181587 TCCTTGTCCGCAACAGGAAA 59.818 50.000 0.49 0.00 42.77 3.13
2893 3396 0.868406 CCGACTTCCTTCAGCAACAC 59.132 55.000 0.00 0.00 0.00 3.32
3416 3934 4.367386 GTCGAAGGAGACGAGGAAATAA 57.633 45.455 0.00 0.00 40.37 1.40
3454 3972 2.425143 ATGCTACAGTTGATGGTGGG 57.575 50.000 0.00 0.00 0.00 4.61
3471 3992 2.844839 GGGATCTCCACCTCCGGG 60.845 72.222 0.00 0.00 37.91 5.73
3517 4038 0.955428 TTGTCCGTGATGCTTGGAGC 60.955 55.000 0.00 0.00 42.82 4.70
3577 4098 0.462047 GGGATGTGATCGAAGGCGTT 60.462 55.000 0.00 0.00 38.98 4.84
4480 7541 6.035650 CCGAATACAGCGAAGACTTTGAAATA 59.964 38.462 6.62 0.00 0.00 1.40
4488 7549 8.233190 CAGCGAAGACTTTGAAATATCTTCTTT 58.767 33.333 20.53 11.49 43.19 2.52
4514 7575 2.041620 TGAAGGCTTCCTGGCAAATAGT 59.958 45.455 23.68 0.00 44.55 2.12
4517 7578 3.510459 AGGCTTCCTGGCAAATAGTTTT 58.490 40.909 0.00 0.00 44.55 2.43
4518 7579 3.903714 AGGCTTCCTGGCAAATAGTTTTT 59.096 39.130 0.00 0.00 44.55 1.94
4544 7965 3.255888 TGTCACAAGTACAGCCTAGACAG 59.744 47.826 0.00 0.00 31.81 3.51
4553 7974 1.748493 CAGCCTAGACAGTCACCTCTC 59.252 57.143 2.66 0.00 0.00 3.20
4564 7985 1.803555 GTCACCTCTCTTCTTTGCTGC 59.196 52.381 0.00 0.00 0.00 5.25
4565 7986 1.417517 TCACCTCTCTTCTTTGCTGCA 59.582 47.619 0.00 0.00 0.00 4.41
4646 8698 5.101139 ACCGCTGGTACCAAGAATAACTTG 61.101 45.833 17.11 0.84 43.87 3.16
4747 8799 3.575965 AAACAGAACCATTTGATCCGC 57.424 42.857 0.00 0.00 0.00 5.54
4800 8852 0.816373 AACACACAAGCATGCACACA 59.184 45.000 21.98 0.00 0.00 3.72
4848 8900 6.362283 GGTATTTTGTAGTTGCATCAACACAC 59.638 38.462 11.63 9.14 45.66 3.82
4919 8971 0.684479 TAGGAGGATCGCACTGCACT 60.684 55.000 1.11 0.00 34.37 4.40
4991 9043 0.319297 CTTGCTTGCCTTCAACCTGC 60.319 55.000 0.00 0.00 0.00 4.85
5015 9067 5.574055 CCTGCATCAATGTTTAACACACATC 59.426 40.000 0.00 0.00 38.61 3.06
5051 9104 3.290710 CACCTGGGTTTCATGGATAAGG 58.709 50.000 0.00 0.00 0.00 2.69
5057 9110 6.439058 CCTGGGTTTCATGGATAAGGTTTTTA 59.561 38.462 0.00 0.00 0.00 1.52
5125 9178 5.189736 TGAGGACTACAGAGTAAATTGGCAT 59.810 40.000 0.00 0.00 35.45 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.376335 TCTTCTGAATCCTCATCATCTTCAT 57.624 36.000 0.00 0.00 0.00 2.57
3 4 6.183360 CCTCTTCTGAATCCTCATCATCTTCA 60.183 42.308 0.00 0.00 0.00 3.02
4 5 6.041865 TCCTCTTCTGAATCCTCATCATCTTC 59.958 42.308 0.00 0.00 0.00 2.87
8 9 5.427806 TGTTCCTCTTCTGAATCCTCATCAT 59.572 40.000 0.00 0.00 0.00 2.45
9 10 4.779489 TGTTCCTCTTCTGAATCCTCATCA 59.221 41.667 0.00 0.00 0.00 3.07
10 11 5.350504 TGTTCCTCTTCTGAATCCTCATC 57.649 43.478 0.00 0.00 0.00 2.92
12 13 5.768980 ATTGTTCCTCTTCTGAATCCTCA 57.231 39.130 0.00 0.00 0.00 3.86
13 14 7.106239 TGTAATTGTTCCTCTTCTGAATCCTC 58.894 38.462 0.00 0.00 0.00 3.71
14 15 7.020827 TGTAATTGTTCCTCTTCTGAATCCT 57.979 36.000 0.00 0.00 0.00 3.24
21 22 9.853177 CCCTTATAATGTAATTGTTCCTCTTCT 57.147 33.333 0.00 0.00 36.99 2.85
22 23 9.628500 ACCCTTATAATGTAATTGTTCCTCTTC 57.372 33.333 0.00 0.00 36.99 2.87
24 25 8.778059 TCACCCTTATAATGTAATTGTTCCTCT 58.222 33.333 0.00 0.00 36.99 3.69
27 28 8.403236 GTGTCACCCTTATAATGTAATTGTTCC 58.597 37.037 0.00 0.00 36.99 3.62
28 29 9.174166 AGTGTCACCCTTATAATGTAATTGTTC 57.826 33.333 0.00 0.00 36.99 3.18
29 30 8.956426 CAGTGTCACCCTTATAATGTAATTGTT 58.044 33.333 0.00 0.00 36.99 2.83
30 31 8.325787 TCAGTGTCACCCTTATAATGTAATTGT 58.674 33.333 0.00 0.00 36.99 2.71
31 32 8.731275 TCAGTGTCACCCTTATAATGTAATTG 57.269 34.615 0.00 0.00 36.99 2.32
32 33 7.993183 CCTCAGTGTCACCCTTATAATGTAATT 59.007 37.037 0.00 0.00 41.28 1.40
33 34 7.127339 ACCTCAGTGTCACCCTTATAATGTAAT 59.873 37.037 0.00 0.00 0.00 1.89
34 35 6.442564 ACCTCAGTGTCACCCTTATAATGTAA 59.557 38.462 0.00 0.00 0.00 2.41
37 38 5.359194 ACCTCAGTGTCACCCTTATAATG 57.641 43.478 0.00 0.00 0.00 1.90
39 40 4.841813 TCAACCTCAGTGTCACCCTTATAA 59.158 41.667 0.00 0.00 0.00 0.98
40 41 4.422057 TCAACCTCAGTGTCACCCTTATA 58.578 43.478 0.00 0.00 0.00 0.98
41 42 3.248024 TCAACCTCAGTGTCACCCTTAT 58.752 45.455 0.00 0.00 0.00 1.73
42 43 2.632996 CTCAACCTCAGTGTCACCCTTA 59.367 50.000 0.00 0.00 0.00 2.69
43 44 1.417890 CTCAACCTCAGTGTCACCCTT 59.582 52.381 0.00 0.00 0.00 3.95
46 47 1.048601 TCCTCAACCTCAGTGTCACC 58.951 55.000 0.00 0.00 0.00 4.02
47 48 1.689273 AGTCCTCAACCTCAGTGTCAC 59.311 52.381 0.00 0.00 0.00 3.67
48 49 2.088104 AGTCCTCAACCTCAGTGTCA 57.912 50.000 0.00 0.00 0.00 3.58
49 50 2.103263 ACAAGTCCTCAACCTCAGTGTC 59.897 50.000 0.00 0.00 0.00 3.67
50 51 2.119495 ACAAGTCCTCAACCTCAGTGT 58.881 47.619 0.00 0.00 0.00 3.55
54 55 3.054728 TGTCAAACAAGTCCTCAACCTCA 60.055 43.478 0.00 0.00 0.00 3.86
55 56 3.541632 TGTCAAACAAGTCCTCAACCTC 58.458 45.455 0.00 0.00 0.00 3.85
57 58 3.004734 CCATGTCAAACAAGTCCTCAACC 59.995 47.826 0.00 0.00 0.00 3.77
60 61 3.496692 CCTCCATGTCAAACAAGTCCTCA 60.497 47.826 0.00 0.00 0.00 3.86
61 62 3.077359 CCTCCATGTCAAACAAGTCCTC 58.923 50.000 0.00 0.00 0.00 3.71
62 63 2.711009 TCCTCCATGTCAAACAAGTCCT 59.289 45.455 0.00 0.00 0.00 3.85
64 65 3.077359 CCTCCTCCATGTCAAACAAGTC 58.923 50.000 0.00 0.00 0.00 3.01
65 66 2.711009 TCCTCCTCCATGTCAAACAAGT 59.289 45.455 0.00 0.00 0.00 3.16
67 68 2.040278 CCTCCTCCTCCATGTCAAACAA 59.960 50.000 0.00 0.00 0.00 2.83
69 70 1.909302 TCCTCCTCCTCCATGTCAAAC 59.091 52.381 0.00 0.00 0.00 2.93
72 73 0.689080 GCTCCTCCTCCTCCATGTCA 60.689 60.000 0.00 0.00 0.00 3.58
73 74 0.689080 TGCTCCTCCTCCTCCATGTC 60.689 60.000 0.00 0.00 0.00 3.06
75 76 1.409251 CCTGCTCCTCCTCCTCCATG 61.409 65.000 0.00 0.00 0.00 3.66
77 78 2.235602 CTCCTGCTCCTCCTCCTCCA 62.236 65.000 0.00 0.00 0.00 3.86
78 79 1.457455 CTCCTGCTCCTCCTCCTCC 60.457 68.421 0.00 0.00 0.00 4.30
79 80 0.032615 TTCTCCTGCTCCTCCTCCTC 60.033 60.000 0.00 0.00 0.00 3.71
80 81 0.032217 CTTCTCCTGCTCCTCCTCCT 60.032 60.000 0.00 0.00 0.00 3.69
81 82 1.048160 CCTTCTCCTGCTCCTCCTCC 61.048 65.000 0.00 0.00 0.00 4.30
82 83 0.032615 TCCTTCTCCTGCTCCTCCTC 60.033 60.000 0.00 0.00 0.00 3.71
83 84 0.032217 CTCCTTCTCCTGCTCCTCCT 60.032 60.000 0.00 0.00 0.00 3.69
86 87 2.187100 CTTTCTCCTTCTCCTGCTCCT 58.813 52.381 0.00 0.00 0.00 3.69
87 88 2.183679 TCTTTCTCCTTCTCCTGCTCC 58.816 52.381 0.00 0.00 0.00 4.70
88 89 3.450457 TCATCTTTCTCCTTCTCCTGCTC 59.550 47.826 0.00 0.00 0.00 4.26
89 90 3.448934 TCATCTTTCTCCTTCTCCTGCT 58.551 45.455 0.00 0.00 0.00 4.24
91 92 5.453621 CCTCATCATCTTTCTCCTTCTCCTG 60.454 48.000 0.00 0.00 0.00 3.86
92 93 4.655186 CCTCATCATCTTTCTCCTTCTCCT 59.345 45.833 0.00 0.00 0.00 3.69
93 94 4.408596 ACCTCATCATCTTTCTCCTTCTCC 59.591 45.833 0.00 0.00 0.00 3.71
94 95 5.128499 TGACCTCATCATCTTTCTCCTTCTC 59.872 44.000 0.00 0.00 29.99 2.87
95 96 5.028802 TGACCTCATCATCTTTCTCCTTCT 58.971 41.667 0.00 0.00 29.99 2.85
96 97 5.350504 TGACCTCATCATCTTTCTCCTTC 57.649 43.478 0.00 0.00 29.99 3.46
97 98 5.768980 TTGACCTCATCATCTTTCTCCTT 57.231 39.130 0.00 0.00 37.11 3.36
98 99 5.191323 ACATTGACCTCATCATCTTTCTCCT 59.809 40.000 0.00 0.00 37.11 3.69
100 101 6.373774 ACAACATTGACCTCATCATCTTTCTC 59.626 38.462 0.00 0.00 37.11 2.87
104 105 5.336213 GCAACAACATTGACCTCATCATCTT 60.336 40.000 0.00 0.00 37.11 2.40
106 107 4.082625 TGCAACAACATTGACCTCATCATC 60.083 41.667 0.00 0.00 37.11 2.92
108 109 3.220940 TGCAACAACATTGACCTCATCA 58.779 40.909 0.00 0.00 34.65 3.07
109 110 3.921119 TGCAACAACATTGACCTCATC 57.079 42.857 0.00 0.00 0.00 2.92
110 111 3.384146 TGTTGCAACAACATTGACCTCAT 59.616 39.130 29.36 0.00 35.67 2.90
111 112 2.757314 TGTTGCAACAACATTGACCTCA 59.243 40.909 29.36 1.37 35.67 3.86
112 113 3.066621 TCTGTTGCAACAACATTGACCTC 59.933 43.478 30.62 0.79 38.66 3.85
113 114 3.023119 TCTGTTGCAACAACATTGACCT 58.977 40.909 30.62 0.00 38.66 3.85
114 115 3.435105 TCTGTTGCAACAACATTGACC 57.565 42.857 30.62 1.54 38.66 4.02
116 117 4.979943 TCTTCTGTTGCAACAACATTGA 57.020 36.364 30.62 21.32 38.66 2.57
117 118 4.026310 GCTTCTTCTGTTGCAACAACATTG 60.026 41.667 30.62 19.47 38.66 2.82
118 119 4.114794 GCTTCTTCTGTTGCAACAACATT 58.885 39.130 30.62 0.00 38.66 2.71
119 120 3.130869 TGCTTCTTCTGTTGCAACAACAT 59.869 39.130 30.62 0.00 38.66 2.71
121 122 2.854185 GTGCTTCTTCTGTTGCAACAAC 59.146 45.455 30.62 19.81 38.66 3.32
123 124 1.405105 GGTGCTTCTTCTGTTGCAACA 59.595 47.619 29.36 29.36 42.11 3.33
124 125 1.405105 TGGTGCTTCTTCTGTTGCAAC 59.595 47.619 22.83 22.83 42.77 4.17
126 127 1.761449 TTGGTGCTTCTTCTGTTGCA 58.239 45.000 0.00 0.00 0.00 4.08
127 128 2.608752 CCATTGGTGCTTCTTCTGTTGC 60.609 50.000 0.00 0.00 0.00 4.17
128 129 2.886523 TCCATTGGTGCTTCTTCTGTTG 59.113 45.455 1.86 0.00 0.00 3.33
129 130 3.228188 TCCATTGGTGCTTCTTCTGTT 57.772 42.857 1.86 0.00 0.00 3.16
131 132 4.589216 TTTTCCATTGGTGCTTCTTCTG 57.411 40.909 1.86 0.00 0.00 3.02
132 133 4.202253 GGTTTTTCCATTGGTGCTTCTTCT 60.202 41.667 1.86 0.00 35.97 2.85
134 135 3.454082 TGGTTTTTCCATTGGTGCTTCTT 59.546 39.130 1.86 0.00 41.93 2.52
136 137 3.467374 TGGTTTTTCCATTGGTGCTTC 57.533 42.857 1.86 0.00 41.93 3.86
160 161 2.889678 CTGCCAGCTTCTTCCTCTTTTT 59.110 45.455 0.00 0.00 0.00 1.94
161 162 2.158549 ACTGCCAGCTTCTTCCTCTTTT 60.159 45.455 0.00 0.00 0.00 2.27
162 163 1.423161 ACTGCCAGCTTCTTCCTCTTT 59.577 47.619 0.00 0.00 0.00 2.52
163 164 1.063183 ACTGCCAGCTTCTTCCTCTT 58.937 50.000 0.00 0.00 0.00 2.85
165 166 2.626840 CTAACTGCCAGCTTCTTCCTC 58.373 52.381 0.00 0.00 0.00 3.71
166 167 1.280421 CCTAACTGCCAGCTTCTTCCT 59.720 52.381 0.00 0.00 0.00 3.36
167 168 1.279271 TCCTAACTGCCAGCTTCTTCC 59.721 52.381 0.00 0.00 0.00 3.46
168 169 2.234908 TCTCCTAACTGCCAGCTTCTTC 59.765 50.000 0.00 0.00 0.00 2.87
169 170 2.235898 CTCTCCTAACTGCCAGCTTCTT 59.764 50.000 0.00 0.00 0.00 2.52
170 171 1.830477 CTCTCCTAACTGCCAGCTTCT 59.170 52.381 0.00 0.00 0.00 2.85
171 172 1.134551 CCTCTCCTAACTGCCAGCTTC 60.135 57.143 0.00 0.00 0.00 3.86
173 174 1.621672 GCCTCTCCTAACTGCCAGCT 61.622 60.000 0.00 0.00 0.00 4.24
176 177 1.995626 GGGCCTCTCCTAACTGCCA 60.996 63.158 0.84 0.00 43.96 4.92
177 178 0.398664 TAGGGCCTCTCCTAACTGCC 60.399 60.000 10.74 0.00 41.42 4.85
182 183 3.656751 CCTAGTAGTAGGGCCTCTCCTAA 59.343 52.174 10.74 0.00 42.25 2.69
183 184 3.116041 TCCTAGTAGTAGGGCCTCTCCTA 60.116 52.174 21.32 6.35 45.65 2.94
184 185 2.067386 CCTAGTAGTAGGGCCTCTCCT 58.933 57.143 10.74 7.49 42.25 3.69
185 186 2.064215 TCCTAGTAGTAGGGCCTCTCC 58.936 57.143 21.32 0.00 45.65 3.71
195 196 6.920817 CACACTTGAATGTGTCCTAGTAGTA 58.079 40.000 0.00 0.00 46.90 1.82
196 197 5.784177 CACACTTGAATGTGTCCTAGTAGT 58.216 41.667 0.00 0.00 46.90 2.73
207 208 3.480470 CTCCTCCAACACACTTGAATGT 58.520 45.455 0.00 0.00 0.00 2.71
208 209 2.816087 CCTCCTCCAACACACTTGAATG 59.184 50.000 0.00 0.00 0.00 2.67
209 210 2.443255 ACCTCCTCCAACACACTTGAAT 59.557 45.455 0.00 0.00 0.00 2.57
210 211 1.843851 ACCTCCTCCAACACACTTGAA 59.156 47.619 0.00 0.00 0.00 2.69
213 214 0.179018 GCACCTCCTCCAACACACTT 60.179 55.000 0.00 0.00 0.00 3.16
215 216 0.465460 TTGCACCTCCTCCAACACAC 60.465 55.000 0.00 0.00 0.00 3.82
216 217 0.465460 GTTGCACCTCCTCCAACACA 60.465 55.000 0.00 0.00 38.85 3.72
217 218 1.172812 GGTTGCACCTCCTCCAACAC 61.173 60.000 0.00 0.00 40.32 3.32
218 219 1.150536 GGTTGCACCTCCTCCAACA 59.849 57.895 0.00 0.00 40.32 3.33
229 230 4.022068 TGAAGGAATGAAATCAGGTTGCAC 60.022 41.667 0.00 0.00 0.00 4.57
230 231 4.151121 TGAAGGAATGAAATCAGGTTGCA 58.849 39.130 0.00 0.00 0.00 4.08
232 233 6.376299 TCTGATGAAGGAATGAAATCAGGTTG 59.624 38.462 10.21 0.00 42.84 3.77
233 234 6.487828 TCTGATGAAGGAATGAAATCAGGTT 58.512 36.000 10.21 0.00 42.84 3.50
234 235 6.070951 TCTGATGAAGGAATGAAATCAGGT 57.929 37.500 10.21 0.00 42.84 4.00
235 236 6.771267 TCATCTGATGAAGGAATGAAATCAGG 59.229 38.462 17.56 0.00 42.84 3.86
236 237 7.803279 TCATCTGATGAAGGAATGAAATCAG 57.197 36.000 17.56 4.90 43.59 2.90
249 250 6.126565 ACCCATCATCTTCTTCATCTGATGAA 60.127 38.462 26.48 26.48 45.27 2.57
251 252 5.622180 ACCCATCATCTTCTTCATCTGATG 58.378 41.667 11.42 11.42 41.70 3.07
252 253 5.908562 ACCCATCATCTTCTTCATCTGAT 57.091 39.130 0.00 0.00 0.00 2.90
253 254 5.434408 CAACCCATCATCTTCTTCATCTGA 58.566 41.667 0.00 0.00 0.00 3.27
254 255 4.036498 GCAACCCATCATCTTCTTCATCTG 59.964 45.833 0.00 0.00 0.00 2.90
256 257 4.036498 CAGCAACCCATCATCTTCTTCATC 59.964 45.833 0.00 0.00 0.00 2.92
257 258 3.952323 CAGCAACCCATCATCTTCTTCAT 59.048 43.478 0.00 0.00 0.00 2.57
258 259 3.245016 ACAGCAACCCATCATCTTCTTCA 60.245 43.478 0.00 0.00 0.00 3.02
259 260 3.350833 ACAGCAACCCATCATCTTCTTC 58.649 45.455 0.00 0.00 0.00 2.87
260 261 3.446442 ACAGCAACCCATCATCTTCTT 57.554 42.857 0.00 0.00 0.00 2.52
262 263 3.507233 TCAAACAGCAACCCATCATCTTC 59.493 43.478 0.00 0.00 0.00 2.87
263 264 3.499338 TCAAACAGCAACCCATCATCTT 58.501 40.909 0.00 0.00 0.00 2.40
264 265 3.087031 CTCAAACAGCAACCCATCATCT 58.913 45.455 0.00 0.00 0.00 2.90
265 266 2.165030 CCTCAAACAGCAACCCATCATC 59.835 50.000 0.00 0.00 0.00 2.92
267 268 1.144708 TCCTCAAACAGCAACCCATCA 59.855 47.619 0.00 0.00 0.00 3.07
268 269 1.909700 TCCTCAAACAGCAACCCATC 58.090 50.000 0.00 0.00 0.00 3.51
269 270 2.173519 CATCCTCAAACAGCAACCCAT 58.826 47.619 0.00 0.00 0.00 4.00
270 271 1.144708 TCATCCTCAAACAGCAACCCA 59.855 47.619 0.00 0.00 0.00 4.51
271 272 1.909700 TCATCCTCAAACAGCAACCC 58.090 50.000 0.00 0.00 0.00 4.11
272 273 3.084039 TCATCATCCTCAAACAGCAACC 58.916 45.455 0.00 0.00 0.00 3.77
273 274 4.397103 TCATCATCATCCTCAAACAGCAAC 59.603 41.667 0.00 0.00 0.00 4.17
274 275 4.591929 TCATCATCATCCTCAAACAGCAA 58.408 39.130 0.00 0.00 0.00 3.91
276 277 4.023107 CCATCATCATCATCCTCAAACAGC 60.023 45.833 0.00 0.00 0.00 4.40
279 280 5.128205 TGTCCATCATCATCATCCTCAAAC 58.872 41.667 0.00 0.00 0.00 2.93
281 282 5.072600 TCATGTCCATCATCATCATCCTCAA 59.927 40.000 0.00 0.00 34.09 3.02
282 283 4.595781 TCATGTCCATCATCATCATCCTCA 59.404 41.667 0.00 0.00 34.09 3.86
283 284 5.161943 TCATGTCCATCATCATCATCCTC 57.838 43.478 0.00 0.00 34.09 3.71
285 286 3.690139 GCTCATGTCCATCATCATCATCC 59.310 47.826 0.00 0.00 34.09 3.51
286 287 3.690139 GGCTCATGTCCATCATCATCATC 59.310 47.826 0.00 0.00 34.09 2.92
287 288 3.073946 TGGCTCATGTCCATCATCATCAT 59.926 43.478 5.54 0.00 34.09 2.45
288 289 2.440253 TGGCTCATGTCCATCATCATCA 59.560 45.455 5.54 0.00 34.09 3.07
289 290 3.136009 TGGCTCATGTCCATCATCATC 57.864 47.619 5.54 0.00 34.09 2.92
290 291 3.588210 TTGGCTCATGTCCATCATCAT 57.412 42.857 9.60 0.00 34.09 2.45
291 292 3.219281 CATTGGCTCATGTCCATCATCA 58.781 45.455 9.60 0.00 34.09 3.07
292 293 3.220110 ACATTGGCTCATGTCCATCATC 58.780 45.455 9.60 0.00 34.09 2.92
293 294 3.220110 GACATTGGCTCATGTCCATCAT 58.780 45.455 15.56 0.80 40.80 2.45
299 300 2.821969 ACAAAGGACATTGGCTCATGTC 59.178 45.455 17.28 17.28 44.63 3.06
300 301 2.880443 ACAAAGGACATTGGCTCATGT 58.120 42.857 2.94 2.94 34.56 3.21
301 302 3.508793 AGAACAAAGGACATTGGCTCATG 59.491 43.478 0.00 0.00 34.56 3.07
302 303 3.771216 AGAACAAAGGACATTGGCTCAT 58.229 40.909 0.00 0.00 34.56 2.90
304 305 3.440522 GGTAGAACAAAGGACATTGGCTC 59.559 47.826 0.00 0.00 34.56 4.70
305 306 3.421844 GGTAGAACAAAGGACATTGGCT 58.578 45.455 0.00 0.00 34.56 4.75
306 307 2.492088 GGGTAGAACAAAGGACATTGGC 59.508 50.000 0.00 0.00 34.56 4.52
307 308 3.761897 TGGGTAGAACAAAGGACATTGG 58.238 45.455 0.00 0.00 34.56 3.16
318 319 2.426431 TCCTCCCTTTGGGTAGAACA 57.574 50.000 2.25 0.00 44.74 3.18
319 320 2.910977 TCTTCCTCCCTTTGGGTAGAAC 59.089 50.000 2.25 0.00 44.74 3.01
320 321 3.182152 CTCTTCCTCCCTTTGGGTAGAA 58.818 50.000 2.25 6.30 44.74 2.10
322 323 2.552367 ACTCTTCCTCCCTTTGGGTAG 58.448 52.381 2.25 0.00 44.74 3.18
324 325 2.552367 CTACTCTTCCTCCCTTTGGGT 58.448 52.381 2.25 0.00 44.74 4.51
325 326 1.840635 CCTACTCTTCCTCCCTTTGGG 59.159 57.143 0.00 0.00 46.11 4.12
326 327 1.840635 CCCTACTCTTCCTCCCTTTGG 59.159 57.143 0.00 0.00 0.00 3.28
328 329 1.203440 TGCCCTACTCTTCCTCCCTTT 60.203 52.381 0.00 0.00 0.00 3.11
331 332 1.677637 CGTGCCCTACTCTTCCTCCC 61.678 65.000 0.00 0.00 0.00 4.30
332 333 0.683504 TCGTGCCCTACTCTTCCTCC 60.684 60.000 0.00 0.00 0.00 4.30
333 334 1.135053 GTTCGTGCCCTACTCTTCCTC 60.135 57.143 0.00 0.00 0.00 3.71
335 336 0.896226 AGTTCGTGCCCTACTCTTCC 59.104 55.000 0.00 0.00 0.00 3.46
336 337 2.338500 CAAGTTCGTGCCCTACTCTTC 58.662 52.381 0.00 0.00 0.00 2.87
337 338 1.002087 CCAAGTTCGTGCCCTACTCTT 59.998 52.381 0.00 0.00 0.00 2.85
338 339 0.608640 CCAAGTTCGTGCCCTACTCT 59.391 55.000 0.00 0.00 0.00 3.24
339 340 0.320697 ACCAAGTTCGTGCCCTACTC 59.679 55.000 0.00 0.00 0.00 2.59
340 341 0.763035 AACCAAGTTCGTGCCCTACT 59.237 50.000 0.00 0.00 0.00 2.57
341 342 1.154197 GAACCAAGTTCGTGCCCTAC 58.846 55.000 0.00 0.00 32.81 3.18
343 344 4.475527 GAACCAAGTTCGTGCCCT 57.524 55.556 0.00 0.00 32.81 5.19
350 351 4.394920 TGAATGCCTTATCGAACCAAGTTC 59.605 41.667 0.00 0.00 38.97 3.01
352 353 3.950397 TGAATGCCTTATCGAACCAAGT 58.050 40.909 0.00 0.00 0.00 3.16
353 354 4.963276 TTGAATGCCTTATCGAACCAAG 57.037 40.909 0.00 0.00 0.00 3.61
354 355 4.764823 AGTTTGAATGCCTTATCGAACCAA 59.235 37.500 0.00 0.00 39.67 3.67
362 363 6.715464 CGAACGATAAGTTTGAATGCCTTAT 58.285 36.000 0.00 0.00 45.10 1.73
363 364 6.102006 CGAACGATAAGTTTGAATGCCTTA 57.898 37.500 0.00 0.00 45.10 2.69
364 365 4.969816 CGAACGATAAGTTTGAATGCCTT 58.030 39.130 0.00 0.00 45.10 4.35
401 402 4.345859 AAACCAAGTTCGTGGATACTGA 57.654 40.909 11.33 0.00 41.65 3.41
428 429 1.605710 CGAATCAATCATGTCTGCCCC 59.394 52.381 0.00 0.00 0.00 5.80
647 649 0.672091 TCTTACATGGCGCGCTTTCA 60.672 50.000 32.29 21.18 0.00 2.69
648 650 0.657840 ATCTTACATGGCGCGCTTTC 59.342 50.000 32.29 15.45 0.00 2.62
653 655 1.053048 CGACTATCTTACATGGCGCG 58.947 55.000 0.00 0.00 0.00 6.86
661 663 9.011407 CACATAGAACAAAGTCGACTATCTTAC 57.989 37.037 20.39 9.21 0.00 2.34
763 958 7.120432 GGGGATAATGATCATACAAAGAGAAGC 59.880 40.741 9.04 0.00 33.27 3.86
764 959 8.381636 AGGGGATAATGATCATACAAAGAGAAG 58.618 37.037 9.04 0.00 33.27 2.85
766 961 7.878621 AGGGGATAATGATCATACAAAGAGA 57.121 36.000 9.04 0.00 33.27 3.10
791 1016 1.955208 GCGGAACCAGGATTTGACCAT 60.955 52.381 0.00 0.00 0.00 3.55
796 1021 2.052104 GGGGCGGAACCAGGATTTG 61.052 63.158 0.00 0.00 42.05 2.32
815 1040 3.451141 TTGTGAAAGTTTCATGTGGCC 57.549 42.857 20.72 7.96 42.47 5.36
850 1076 3.015934 TGCTTTGAACACATGCATGAC 57.984 42.857 32.75 19.04 0.00 3.06
934 1160 3.198635 CCCTCTCCTATCTTGCTTGACAA 59.801 47.826 0.00 0.00 36.62 3.18
936 1162 2.484594 GCCCTCTCCTATCTTGCTTGAC 60.485 54.545 0.00 0.00 0.00 3.18
939 1165 1.135960 GGCCCTCTCCTATCTTGCTT 58.864 55.000 0.00 0.00 0.00 3.91
940 1166 1.118356 CGGCCCTCTCCTATCTTGCT 61.118 60.000 0.00 0.00 0.00 3.91
1042 1295 2.938354 ACTGCAGCAGTGGAATGAC 58.062 52.632 27.73 0.00 43.63 3.06
1097 1350 4.593864 GATGGGAGCTCGGACGCC 62.594 72.222 7.83 3.13 0.00 5.68
1098 1351 3.492311 GAGATGGGAGCTCGGACGC 62.492 68.421 7.83 0.00 0.00 5.19
1100 1353 2.503382 GGGAGATGGGAGCTCGGAC 61.503 68.421 7.83 0.96 33.19 4.79
1103 1356 1.333636 ACAAGGGAGATGGGAGCTCG 61.334 60.000 7.83 0.00 33.19 5.03
1104 1357 0.179936 CACAAGGGAGATGGGAGCTC 59.820 60.000 4.71 4.71 0.00 4.09
1105 1358 1.919600 GCACAAGGGAGATGGGAGCT 61.920 60.000 0.00 0.00 0.00 4.09
1106 1359 1.452833 GCACAAGGGAGATGGGAGC 60.453 63.158 0.00 0.00 0.00 4.70
1107 1360 0.179936 GAGCACAAGGGAGATGGGAG 59.820 60.000 0.00 0.00 0.00 4.30
1108 1361 0.547471 TGAGCACAAGGGAGATGGGA 60.547 55.000 0.00 0.00 0.00 4.37
1109 1362 0.393537 GTGAGCACAAGGGAGATGGG 60.394 60.000 0.00 0.00 0.00 4.00
1110 1363 0.393537 GGTGAGCACAAGGGAGATGG 60.394 60.000 2.75 0.00 0.00 3.51
1111 1364 0.617413 AGGTGAGCACAAGGGAGATG 59.383 55.000 2.75 0.00 0.00 2.90
1112 1365 0.617413 CAGGTGAGCACAAGGGAGAT 59.383 55.000 2.75 0.00 0.00 2.75
1231 1484 2.202987 GTGGCGCAGGAGGAGATG 60.203 66.667 10.83 0.00 0.00 2.90
1273 1526 0.863144 CATTGCTGCACCAAACAAGC 59.137 50.000 0.00 0.00 0.00 4.01
1278 1531 0.675083 CTGACCATTGCTGCACCAAA 59.325 50.000 0.00 0.00 0.00 3.28
1402 1655 2.343101 GTGCAACTCGCTTGGTACATA 58.657 47.619 0.00 0.00 43.06 2.29
1426 1690 4.202030 CCCTCTCAACTCGTACCTGAATAC 60.202 50.000 0.00 0.00 0.00 1.89
1443 1707 2.266055 CTCCCGTGCAACCCTCTC 59.734 66.667 0.00 0.00 0.00 3.20
1665 2025 2.046892 CCCACCACTGAAGAGCGG 60.047 66.667 0.00 0.00 0.00 5.52
1670 2030 0.610687 GACTCCTCCCACCACTGAAG 59.389 60.000 0.00 0.00 0.00 3.02
2052 2433 0.835971 AATTTTGGGGAAGCGGCCTT 60.836 50.000 0.00 0.00 0.00 4.35
2057 2438 0.890683 AGCAGAATTTTGGGGAAGCG 59.109 50.000 0.00 0.00 0.00 4.68
2060 2441 0.975887 GCCAGCAGAATTTTGGGGAA 59.024 50.000 0.00 0.00 32.53 3.97
2061 2442 0.114954 AGCCAGCAGAATTTTGGGGA 59.885 50.000 0.00 0.00 32.53 4.81
2062 2443 0.248289 CAGCCAGCAGAATTTTGGGG 59.752 55.000 0.00 0.00 32.53 4.96
2063 2444 0.390735 GCAGCCAGCAGAATTTTGGG 60.391 55.000 0.00 0.00 44.79 4.12
2064 2445 3.132863 GCAGCCAGCAGAATTTTGG 57.867 52.632 0.00 0.00 44.79 3.28
2087 2468 1.709147 CCGGGAATGAAGAGCGCTTG 61.709 60.000 13.26 0.00 33.61 4.01
2088 2469 1.450312 CCGGGAATGAAGAGCGCTT 60.450 57.895 13.26 0.95 36.96 4.68
2090 2471 0.249911 ATACCGGGAATGAAGAGCGC 60.250 55.000 6.32 0.00 0.00 5.92
2091 2472 2.296471 AGTATACCGGGAATGAAGAGCG 59.704 50.000 6.32 0.00 0.00 5.03
2101 2482 3.554129 CGATGCATTTGAGTATACCGGGA 60.554 47.826 6.32 0.00 0.00 5.14
2110 2491 2.012673 GGCTTCTCGATGCATTTGAGT 58.987 47.619 22.05 0.00 37.18 3.41
2144 2525 1.863454 CAGGCTGTTAATGCTAGCTCG 59.137 52.381 17.23 0.00 37.58 5.03
2172 2553 1.048724 CCTCCGAATAGGCTCACCCA 61.049 60.000 0.00 0.00 40.77 4.51
2173 2554 1.049289 ACCTCCGAATAGGCTCACCC 61.049 60.000 0.00 0.00 40.62 4.61
2212 2593 8.094284 TGAAATCTTCAAGAGGATCAATCCTA 57.906 34.615 11.53 0.00 46.37 2.94
2214 2595 7.820578 ATGAAATCTTCAAGAGGATCAATCC 57.179 36.000 0.43 0.43 44.40 3.01
2268 2649 4.873827 TGGCCGATGTTAAAAGATACTCAC 59.126 41.667 0.00 0.00 0.00 3.51
2468 2850 1.216710 GTCCGAGAGAAGCCACAGG 59.783 63.158 0.00 0.00 0.00 4.00
2470 2852 0.318441 CTTGTCCGAGAGAAGCCACA 59.682 55.000 0.00 0.00 0.00 4.17
2578 3006 3.392616 AGAAGGCTATGGGTGGAATGTAG 59.607 47.826 0.00 0.00 0.00 2.74
2588 3028 2.771943 TGTAGTGGAAGAAGGCTATGGG 59.228 50.000 0.00 0.00 0.00 4.00
2744 3187 5.245977 TCACTTCTGTTGACACCATATCTGA 59.754 40.000 0.00 0.00 0.00 3.27
2762 3205 4.876125 TCATGATATCGAGGCTTCACTTC 58.124 43.478 0.00 0.00 0.00 3.01
2833 3336 3.432749 CGACCCTCATCATCTTGGAATGT 60.433 47.826 0.00 0.00 0.00 2.71
2893 3396 1.467734 GAGCAAGACTTCATGTGCCAG 59.532 52.381 0.50 0.00 37.73 4.85
3142 3648 0.386985 GTCCGTGGTGAGAACGAGAC 60.387 60.000 0.00 0.54 43.68 3.36
3313 3822 2.099098 CGTGCAAAGGTTTCTTCTGGTT 59.901 45.455 0.00 0.00 31.82 3.67
3416 3934 6.617782 AGCATATATCATCTGTGTAAGCCT 57.382 37.500 0.00 0.00 0.00 4.58
3471 3992 0.593128 CTGTTGCTGCTGGGTACAAC 59.407 55.000 0.00 0.00 42.10 3.32
3517 4038 1.608055 TGGACAACACTCTGGCAATG 58.392 50.000 0.00 0.00 0.00 2.82
3525 4046 1.808945 CAGGCAGATTGGACAACACTC 59.191 52.381 0.00 0.00 0.00 3.51
3577 4098 0.478072 AGCACAACATCTCCACCCAA 59.522 50.000 0.00 0.00 0.00 4.12
3907 4461 2.025887 AGTCGGATTGGCTTCCAGAAAT 60.026 45.455 7.64 0.00 35.34 2.17
4337 4989 1.808945 AGCAAACGAGCATGGAAGAAG 59.191 47.619 0.00 0.00 36.85 2.85
4480 7541 5.044550 AGGAAGCCTTCATGGTAAAGAAGAT 60.045 40.000 6.80 0.00 42.95 2.40
4514 7575 5.883673 AGGCTGTACTTGTGACAACTAAAAA 59.116 36.000 0.00 0.00 0.00 1.94
4517 7578 4.682778 AGGCTGTACTTGTGACAACTAA 57.317 40.909 0.00 0.00 0.00 2.24
4518 7579 5.048224 GTCTAGGCTGTACTTGTGACAACTA 60.048 44.000 0.00 0.00 0.00 2.24
4544 7965 1.803555 GCAGCAAAGAAGAGAGGTGAC 59.196 52.381 0.00 0.00 0.00 3.67
4564 7985 0.652071 ATGTATCGTGTGCATGCGTG 59.348 50.000 14.09 0.09 31.45 5.34
4565 7986 2.217429 TATGTATCGTGTGCATGCGT 57.783 45.000 14.09 0.00 34.75 5.24
4646 8698 9.533253 TGGTTAGTTGTACTAGTACTTTTCAAC 57.467 33.333 28.56 23.13 37.00 3.18
4666 8718 1.079503 GGAGCGCAACTTCTGGTTAG 58.920 55.000 11.47 0.00 36.23 2.34
4693 8745 3.192212 GGAGTCATGCAAAGGAAAGGAAG 59.808 47.826 0.00 0.00 0.00 3.46
4747 8799 5.705441 ACAAAATACACACCATAGACTGTGG 59.295 40.000 16.18 16.18 41.85 4.17
4837 8889 2.878406 ACCAGTACTTGTGTGTTGATGC 59.122 45.455 0.00 0.00 0.00 3.91
4848 8900 1.802960 CTGCAGCAAGACCAGTACTTG 59.197 52.381 0.00 0.00 44.92 3.16
4919 8971 1.272369 TGGTTGGCCATATCAAGTGCA 60.272 47.619 6.09 0.00 40.46 4.57
4950 9002 3.616802 GCTAGACGGGCCTTATAACCATC 60.617 52.174 0.84 0.00 0.00 3.51
4955 9007 2.224209 GCAAGCTAGACGGGCCTTATAA 60.224 50.000 0.84 0.00 0.00 0.98
4991 9043 4.869215 TGTGTGTTAAACATTGATGCAGG 58.131 39.130 0.00 0.00 41.97 4.85
5015 9067 3.181473 CCCAGGTGCATGGTCATATTTTG 60.181 47.826 5.63 0.00 38.81 2.44
5062 9115 7.698550 CGAAGTTAGTAGCTATGCTATACATGG 59.301 40.741 0.00 0.00 43.30 3.66
5125 9178 2.098934 CACTTTAGTGTTGGCAGTTGCA 59.901 45.455 6.43 0.00 40.97 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.