Multiple sequence alignment - TraesCS6A01G413500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G413500 chr6A 100.000 2555 0 0 1 2555 614597189 614599743 0.000000e+00 4719.0
1 TraesCS6A01G413500 chr6A 80.051 391 27 21 1984 2351 614590480 614590842 2.540000e-60 243.0
2 TraesCS6A01G413500 chr6A 75.758 396 82 11 3 394 471164185 471163800 1.210000e-43 187.0
3 TraesCS6A01G413500 chr6A 90.351 114 8 3 2224 2336 614610205 614610316 2.050000e-31 147.0
4 TraesCS6A01G413500 chr6A 75.227 331 64 11 1 324 449641460 449641779 9.530000e-30 141.0
5 TraesCS6A01G413500 chr6B 88.076 1585 105 45 3 1556 715686704 715688235 0.000000e+00 1803.0
6 TraesCS6A01G413500 chr6B 82.670 427 35 26 1848 2258 715688400 715688803 2.430000e-90 342.0
7 TraesCS6A01G413500 chr6B 88.095 252 23 7 2058 2308 715682263 715682508 2.490000e-75 292.0
8 TraesCS6A01G413500 chr6B 98.795 83 1 0 2224 2306 715699192 715699274 5.700000e-32 148.0
9 TraesCS6A01G413500 chr6B 88.785 107 10 1 2212 2318 715703374 715703478 2.060000e-26 130.0
10 TraesCS6A01G413500 chr6B 97.222 72 2 0 1984 2055 715682141 715682212 3.450000e-24 122.0
11 TraesCS6A01G413500 chr6B 92.308 52 4 0 1660 1711 715688316 715688367 9.800000e-10 75.0
12 TraesCS6A01G413500 chr6D 89.623 1166 57 29 490 1642 469552265 469553379 0.000000e+00 1424.0
13 TraesCS6A01G413500 chr6D 86.817 531 41 11 1844 2351 469553828 469554352 1.330000e-157 566.0
14 TraesCS6A01G413500 chr6D 82.422 512 62 16 6 493 469541600 469542107 3.040000e-114 422.0
15 TraesCS6A01G413500 chr6D 87.654 162 17 2 2192 2350 469539474 469539635 4.340000e-43 185.0
16 TraesCS6A01G413500 chr6D 81.690 142 6 10 1984 2105 469539254 469539395 1.620000e-17 100.0
17 TraesCS6A01G413500 chr6D 89.655 58 6 0 290 347 450559315 450559372 9.800000e-10 75.0
18 TraesCS6A01G413500 chr5B 88.865 467 47 4 1091 1556 411786181 411785719 1.030000e-158 569.0
19 TraesCS6A01G413500 chr5A 88.865 467 47 4 1091 1556 451393021 451392559 1.030000e-158 569.0
20 TraesCS6A01G413500 chr5D 88.889 459 46 4 1099 1556 350980808 350980354 6.170000e-156 560.0
21 TraesCS6A01G413500 chr5D 86.724 467 57 4 1091 1556 350731393 350730931 4.870000e-142 514.0
22 TraesCS6A01G413500 chr5D 75.463 216 52 1 6 221 436362754 436362540 1.250000e-18 104.0
23 TraesCS6A01G413500 chr7D 77.485 342 71 5 1 340 595345355 595345018 1.550000e-47 200.0
24 TraesCS6A01G413500 chr7D 86.066 122 12 5 2224 2342 579056213 579056332 2.670000e-25 126.0
25 TraesCS6A01G413500 chr7D 83.333 132 17 5 2213 2342 579328053 579327925 1.610000e-22 117.0
26 TraesCS6A01G413500 chr3A 74.112 394 77 12 3 394 44626551 44626181 3.430000e-29 139.0
27 TraesCS6A01G413500 chr3B 81.538 130 18 5 6 132 74314865 74314739 4.500000e-18 102.0
28 TraesCS6A01G413500 chr3B 79.839 124 19 5 5 128 628716014 628716131 4.530000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G413500 chr6A 614597189 614599743 2554 False 4719.000000 4719 100.000000 1 2555 1 chr6A.!!$F3 2554
1 TraesCS6A01G413500 chr6B 715686704 715688803 2099 False 740.000000 1803 87.684667 3 2258 3 chr6B.!!$F4 2255
2 TraesCS6A01G413500 chr6D 469552265 469554352 2087 False 995.000000 1424 88.220000 490 2351 2 chr6D.!!$F3 1861
3 TraesCS6A01G413500 chr6D 469539254 469542107 2853 False 235.666667 422 83.922000 6 2350 3 chr6D.!!$F2 2344

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 2438 0.108615 CGGCGACTTGGACATCTTCT 60.109 55.0 0.0 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1854 4352 0.037605 AGCACTCGGTAAAACTCCGG 60.038 55.0 0.0 0.0 46.82 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 2373 5.745312 TGTTGGCTCTCTTTAGATCTTGA 57.255 39.130 0.00 0.00 0.00 3.02
31 2374 5.482908 TGTTGGCTCTCTTTAGATCTTGAC 58.517 41.667 0.00 0.00 0.00 3.18
38 2381 6.672266 TCTCTTTAGATCTTGACAGTTGGT 57.328 37.500 0.00 0.00 0.00 3.67
50 2393 4.631131 TGACAGTTGGTGTGTCTATCAAG 58.369 43.478 4.96 0.00 44.02 3.02
71 2414 5.419239 AGGAGAGCAATAGATTGGCTATC 57.581 43.478 0.34 0.34 38.88 2.08
72 2415 4.842948 AGGAGAGCAATAGATTGGCTATCA 59.157 41.667 11.40 0.00 38.88 2.15
76 2419 4.070716 AGCAATAGATTGGCTATCAGTGC 58.929 43.478 17.93 17.93 38.88 4.40
85 2428 1.756375 GCTATCAGTGCGGCGACTTG 61.756 60.000 12.98 4.69 0.00 3.16
86 2429 1.148157 CTATCAGTGCGGCGACTTGG 61.148 60.000 12.98 0.93 0.00 3.61
87 2430 1.600511 TATCAGTGCGGCGACTTGGA 61.601 55.000 12.98 6.54 0.00 3.53
88 2431 3.414700 CAGTGCGGCGACTTGGAC 61.415 66.667 12.98 0.00 0.00 4.02
89 2432 3.923864 AGTGCGGCGACTTGGACA 61.924 61.111 12.98 0.00 0.00 4.02
90 2433 2.742372 GTGCGGCGACTTGGACAT 60.742 61.111 12.98 0.00 0.00 3.06
91 2434 2.434185 TGCGGCGACTTGGACATC 60.434 61.111 12.98 0.00 0.00 3.06
93 2436 1.741770 GCGGCGACTTGGACATCTT 60.742 57.895 12.98 0.00 0.00 2.40
94 2437 1.696832 GCGGCGACTTGGACATCTTC 61.697 60.000 12.98 0.00 0.00 2.87
95 2438 0.108615 CGGCGACTTGGACATCTTCT 60.109 55.000 0.00 0.00 0.00 2.85
98 2441 2.814336 GGCGACTTGGACATCTTCTTTT 59.186 45.455 0.00 0.00 0.00 2.27
143 2490 4.102524 TGGTTTCTCCAACTCTCTAAAGCA 59.897 41.667 0.00 0.00 44.12 3.91
157 2504 5.425217 TCTCTAAAGCAGTGGTGATGGATTA 59.575 40.000 0.00 0.00 0.00 1.75
169 2516 4.335594 GGTGATGGATTACAAGCTTGTACC 59.664 45.833 33.52 30.17 42.84 3.34
177 2525 0.250124 CAAGCTTGTACCACGTGGGA 60.250 55.000 36.47 28.80 41.15 4.37
185 2533 2.159014 TGTACCACGTGGGATAATGCTC 60.159 50.000 36.47 16.45 41.15 4.26
192 2540 2.767505 GTGGGATAATGCTCTAACCGG 58.232 52.381 0.00 0.00 0.00 5.28
228 2576 9.646427 AATGATTTCTAGATATCGTCTTAAGCC 57.354 33.333 15.61 0.00 38.42 4.35
229 2577 8.178313 TGATTTCTAGATATCGTCTTAAGCCA 57.822 34.615 15.66 0.00 38.42 4.75
249 2597 2.165641 CACGAGTGGCTATTGTGGTCTA 59.834 50.000 0.00 0.00 0.00 2.59
250 2598 2.427453 ACGAGTGGCTATTGTGGTCTAG 59.573 50.000 0.00 0.00 0.00 2.43
251 2599 2.427453 CGAGTGGCTATTGTGGTCTAGT 59.573 50.000 0.00 0.00 0.00 2.57
252 2600 3.630769 CGAGTGGCTATTGTGGTCTAGTA 59.369 47.826 0.00 0.00 0.00 1.82
263 2611 9.935241 CTATTGTGGTCTAGTATAAAGCATGAT 57.065 33.333 0.00 0.00 0.00 2.45
288 2636 4.139786 GGTGATGGCATTCACATGTATCT 58.860 43.478 22.53 0.00 46.32 1.98
294 2643 6.839124 TGGCATTCACATGTATCTTTTTCT 57.161 33.333 0.00 0.00 32.28 2.52
345 2694 2.587753 ACGGGCGGCATACAATCG 60.588 61.111 12.47 5.58 0.00 3.34
346 2695 2.279851 CGGGCGGCATACAATCGA 60.280 61.111 12.47 0.00 0.00 3.59
352 2701 2.286418 GGCGGCATACAATCGAAGAAAG 60.286 50.000 3.07 0.00 43.58 2.62
361 2710 4.238514 ACAATCGAAGAAAGAAGAGGACG 58.761 43.478 0.00 0.00 43.58 4.79
362 2711 4.022242 ACAATCGAAGAAAGAAGAGGACGA 60.022 41.667 0.00 0.00 43.58 4.20
363 2712 3.555917 TCGAAGAAAGAAGAGGACGAC 57.444 47.619 0.00 0.00 0.00 4.34
366 2715 4.392445 TCGAAGAAAGAAGAGGACGACTAG 59.608 45.833 0.00 0.00 0.00 2.57
370 2719 6.687081 AGAAAGAAGAGGACGACTAGTATG 57.313 41.667 0.00 0.00 0.00 2.39
372 2721 6.885376 AGAAAGAAGAGGACGACTAGTATGAA 59.115 38.462 0.00 0.00 0.00 2.57
381 2730 8.366671 AGGACGACTAGTATGAATTTTAATGC 57.633 34.615 0.00 0.00 0.00 3.56
415 2782 8.617809 GTTTTCAGTTGTCCTTTCATTGTACTA 58.382 33.333 0.00 0.00 0.00 1.82
606 2983 3.878778 AGTACAAAGGAATGCTAGCCAG 58.121 45.455 13.29 0.00 0.00 4.85
612 2989 3.482156 AGGAATGCTAGCCAGTACATG 57.518 47.619 13.29 0.00 0.00 3.21
621 2998 7.962964 TGCTAGCCAGTACATGATTTTATAC 57.037 36.000 13.29 0.00 0.00 1.47
628 3005 7.360946 GCCAGTACATGATTTTATACGAATCCC 60.361 40.741 0.00 0.00 33.56 3.85
630 3007 8.712363 CAGTACATGATTTTATACGAATCCCAG 58.288 37.037 0.00 0.77 33.56 4.45
696 3077 2.411547 CGCTCTTGACGAACCAAACATC 60.412 50.000 0.00 0.00 0.00 3.06
706 3087 4.750098 ACGAACCAAACATCTACAGTTCAG 59.250 41.667 0.00 0.00 34.65 3.02
713 3094 7.041098 ACCAAACATCTACAGTTCAGATTCAAC 60.041 37.037 0.00 0.00 30.18 3.18
753 3142 9.917872 ATTATAGAATTATCTCATACGTCGTCG 57.082 33.333 0.00 0.00 38.87 5.12
754 3143 4.465016 AGAATTATCTCATACGTCGTCGC 58.535 43.478 0.00 0.00 41.18 5.19
755 3144 3.891056 ATTATCTCATACGTCGTCGCA 57.109 42.857 0.00 0.00 41.18 5.10
756 3145 3.891056 TTATCTCATACGTCGTCGCAT 57.109 42.857 0.00 0.00 41.18 4.73
757 3146 2.776312 ATCTCATACGTCGTCGCATT 57.224 45.000 0.00 0.00 41.18 3.56
758 3147 1.822581 TCTCATACGTCGTCGCATTG 58.177 50.000 0.00 0.00 41.18 2.82
759 3148 1.399089 TCTCATACGTCGTCGCATTGA 59.601 47.619 0.00 2.38 41.18 2.57
760 3149 2.159490 TCTCATACGTCGTCGCATTGAA 60.159 45.455 0.00 0.00 41.18 2.69
761 3150 2.789339 CTCATACGTCGTCGCATTGAAT 59.211 45.455 0.00 0.00 41.18 2.57
771 3160 2.033151 GTCGCATTGAATTAGCCCGTAC 60.033 50.000 0.00 0.00 0.00 3.67
789 3178 0.179119 ACCATAACGACACGCCTAGC 60.179 55.000 0.00 0.00 0.00 3.42
790 3179 0.874607 CCATAACGACACGCCTAGCC 60.875 60.000 0.00 0.00 0.00 3.93
793 3182 1.683943 TAACGACACGCCTAGCCTAT 58.316 50.000 0.00 0.00 0.00 2.57
794 3183 1.683943 AACGACACGCCTAGCCTATA 58.316 50.000 0.00 0.00 0.00 1.31
795 3184 1.906990 ACGACACGCCTAGCCTATAT 58.093 50.000 0.00 0.00 0.00 0.86
796 3185 3.063510 ACGACACGCCTAGCCTATATA 57.936 47.619 0.00 0.00 0.00 0.86
797 3186 3.008330 ACGACACGCCTAGCCTATATAG 58.992 50.000 2.46 2.46 0.00 1.31
798 3187 3.008330 CGACACGCCTAGCCTATATAGT 58.992 50.000 8.92 0.00 0.00 2.12
799 3188 4.186926 CGACACGCCTAGCCTATATAGTA 58.813 47.826 8.92 0.00 0.00 1.82
800 3189 4.033817 CGACACGCCTAGCCTATATAGTAC 59.966 50.000 8.92 0.93 0.00 2.73
820 3215 7.833285 AGTACACTAATTTTTGGGTCACATT 57.167 32.000 0.00 0.00 0.00 2.71
822 3217 6.096673 ACACTAATTTTTGGGTCACATTCC 57.903 37.500 0.00 0.00 0.00 3.01
887 3282 7.981789 TGACTTTGTTGTATTTTATGTTGGCAA 59.018 29.630 0.00 0.00 0.00 4.52
909 3304 0.675633 CCACCCCAAACAAGCAAGAG 59.324 55.000 0.00 0.00 0.00 2.85
979 3374 3.241784 GCAATCTTTCTCTCACGATCGAC 59.758 47.826 24.34 0.00 0.00 4.20
998 3393 1.635663 CGAGCCAACACAACCCGATC 61.636 60.000 0.00 0.00 0.00 3.69
999 3394 1.635663 GAGCCAACACAACCCGATCG 61.636 60.000 8.51 8.51 0.00 3.69
1000 3395 1.669760 GCCAACACAACCCGATCGA 60.670 57.895 18.66 0.00 0.00 3.59
1001 3396 1.024579 GCCAACACAACCCGATCGAT 61.025 55.000 18.66 0.00 0.00 3.59
1002 3397 0.726827 CCAACACAACCCGATCGATG 59.273 55.000 18.66 14.61 0.00 3.84
1003 3398 0.096976 CAACACAACCCGATCGATGC 59.903 55.000 18.66 0.00 0.00 3.91
1004 3399 1.024579 AACACAACCCGATCGATGCC 61.025 55.000 18.66 0.00 0.00 4.40
1005 3400 1.153369 CACAACCCGATCGATGCCT 60.153 57.895 18.66 0.00 0.00 4.75
1006 3401 1.144057 ACAACCCGATCGATGCCTC 59.856 57.895 18.66 0.00 0.00 4.70
1007 3402 1.595382 CAACCCGATCGATGCCTCC 60.595 63.158 18.66 0.00 0.00 4.30
1008 3403 2.063979 AACCCGATCGATGCCTCCA 61.064 57.895 18.66 0.00 0.00 3.86
1009 3404 1.410850 AACCCGATCGATGCCTCCAT 61.411 55.000 18.66 0.00 0.00 3.41
1010 3405 1.079543 CCCGATCGATGCCTCCATC 60.080 63.158 18.66 0.00 43.55 3.51
1414 3809 2.667199 TCGACGAGTGCGACTCCA 60.667 61.111 0.00 0.00 42.12 3.86
1428 3823 1.153369 CTCCATGAACGGGTGCGAT 60.153 57.895 0.00 0.00 0.00 4.58
1429 3824 1.431488 CTCCATGAACGGGTGCGATG 61.431 60.000 0.00 0.00 0.00 3.84
1430 3825 1.449423 CCATGAACGGGTGCGATGA 60.449 57.895 0.00 0.00 0.00 2.92
1577 3989 2.017049 CCTGTGGTGCCTTAATGTAGC 58.983 52.381 0.00 0.00 0.00 3.58
1578 3990 2.356125 CCTGTGGTGCCTTAATGTAGCT 60.356 50.000 0.00 0.00 0.00 3.32
1579 3991 3.118408 CCTGTGGTGCCTTAATGTAGCTA 60.118 47.826 0.00 0.00 0.00 3.32
1580 3992 4.122776 CTGTGGTGCCTTAATGTAGCTAG 58.877 47.826 0.00 0.00 0.00 3.42
1602 4014 7.118390 GCTAGTGTTCTCTTGCTTATTTGAAGA 59.882 37.037 0.00 0.00 34.44 2.87
1603 4015 7.807977 AGTGTTCTCTTGCTTATTTGAAGAA 57.192 32.000 0.00 0.00 0.00 2.52
1604 4016 7.643579 AGTGTTCTCTTGCTTATTTGAAGAAC 58.356 34.615 0.00 0.00 35.21 3.01
1605 4017 6.858478 GTGTTCTCTTGCTTATTTGAAGAACC 59.142 38.462 9.18 0.00 34.14 3.62
1607 4019 7.285401 TGTTCTCTTGCTTATTTGAAGAACCTT 59.715 33.333 9.18 0.00 34.14 3.50
1610 4022 8.137437 TCTCTTGCTTATTTGAAGAACCTTTTG 58.863 33.333 0.00 0.00 0.00 2.44
1611 4023 7.781056 TCTTGCTTATTTGAAGAACCTTTTGT 58.219 30.769 0.00 0.00 0.00 2.83
1612 4024 7.706179 TCTTGCTTATTTGAAGAACCTTTTGTG 59.294 33.333 0.00 0.00 0.00 3.33
1613 4025 6.872920 TGCTTATTTGAAGAACCTTTTGTGT 58.127 32.000 0.00 0.00 0.00 3.72
1614 4026 8.001881 TGCTTATTTGAAGAACCTTTTGTGTA 57.998 30.769 0.00 0.00 0.00 2.90
1615 4027 8.637986 TGCTTATTTGAAGAACCTTTTGTGTAT 58.362 29.630 0.00 0.00 0.00 2.29
1616 4028 8.915654 GCTTATTTGAAGAACCTTTTGTGTATG 58.084 33.333 0.00 0.00 0.00 2.39
1617 4029 8.810652 TTATTTGAAGAACCTTTTGTGTATGC 57.189 30.769 0.00 0.00 0.00 3.14
1618 4030 4.481930 TGAAGAACCTTTTGTGTATGCG 57.518 40.909 0.00 0.00 0.00 4.73
1619 4031 3.880490 TGAAGAACCTTTTGTGTATGCGT 59.120 39.130 0.00 0.00 0.00 5.24
1620 4032 3.896648 AGAACCTTTTGTGTATGCGTG 57.103 42.857 0.00 0.00 0.00 5.34
1627 4039 1.511318 TTGTGTATGCGTGGTGGTGC 61.511 55.000 0.00 0.00 0.00 5.01
1628 4040 2.359354 TGTATGCGTGGTGGTGCC 60.359 61.111 0.00 0.00 37.90 5.01
1642 4054 3.558321 GGTGGTGCCTTTGATGTAGTGTA 60.558 47.826 0.00 0.00 0.00 2.90
1643 4055 4.261801 GTGGTGCCTTTGATGTAGTGTAT 58.738 43.478 0.00 0.00 0.00 2.29
1644 4056 4.700213 GTGGTGCCTTTGATGTAGTGTATT 59.300 41.667 0.00 0.00 0.00 1.89
1645 4057 5.183140 GTGGTGCCTTTGATGTAGTGTATTT 59.817 40.000 0.00 0.00 0.00 1.40
1646 4058 5.772672 TGGTGCCTTTGATGTAGTGTATTTT 59.227 36.000 0.00 0.00 0.00 1.82
1679 4176 8.691797 ACACCTTTGATGTAGTGTTAAAATGTT 58.308 29.630 0.00 0.00 40.43 2.71
1733 4231 4.959631 TTCGTAACAGCAAAAGACTACG 57.040 40.909 0.00 0.00 34.84 3.51
1735 4233 2.729882 CGTAACAGCAAAAGACTACGCT 59.270 45.455 0.00 0.00 34.29 5.07
1737 4235 4.318546 CGTAACAGCAAAAGACTACGCTTT 60.319 41.667 0.00 0.00 39.65 3.51
1756 4254 5.582550 GCTTTGCTAATTACCAATCACCTC 58.417 41.667 0.00 0.00 0.00 3.85
1793 4291 5.163933 CGCTAAAATTGCAAACGGAGTAGTA 60.164 40.000 1.71 0.00 45.00 1.82
1806 4304 4.051922 CGGAGTAGTATTGCAAGACCATC 58.948 47.826 20.09 14.71 0.00 3.51
1807 4305 4.441495 CGGAGTAGTATTGCAAGACCATCA 60.441 45.833 20.09 1.25 0.00 3.07
1823 4321 1.072266 ATCACACACCAAGGGCCTTA 58.928 50.000 20.44 0.13 0.00 2.69
1830 4328 0.404426 ACCAAGGGCCTTACTGGAAC 59.596 55.000 25.97 0.00 38.35 3.62
1833 4331 2.437895 GGGCCTTACTGGAACCGC 60.438 66.667 0.84 0.00 38.35 5.68
1885 4546 4.015872 ACCGAGTGCTTTTTATCAGGAA 57.984 40.909 0.00 0.00 0.00 3.36
1889 4550 5.642063 CCGAGTGCTTTTTATCAGGAAGTTA 59.358 40.000 0.00 0.00 0.00 2.24
1945 4610 4.976224 ACTTGGCAAAAACGTAGAACTT 57.024 36.364 0.00 0.00 0.00 2.66
1954 4619 1.165270 ACGTAGAACTTGGCAATGGC 58.835 50.000 0.00 0.00 40.13 4.40
1981 4646 2.127383 CGGAGCGCACGGAAAAAC 60.127 61.111 11.47 0.00 0.00 2.43
2056 4721 5.450818 AAGCCCAGTTACAGATTATTCCA 57.549 39.130 0.00 0.00 0.00 3.53
2118 4802 0.037697 AGCGTCCGAACAATGTGCTA 60.038 50.000 0.00 0.00 0.00 3.49
2258 4951 1.518367 TCGATCCCCCTGCCTTTTAT 58.482 50.000 0.00 0.00 0.00 1.40
2264 4957 2.585432 TCCCCCTGCCTTTTATTAGCTT 59.415 45.455 0.00 0.00 0.00 3.74
2265 4958 2.959030 CCCCCTGCCTTTTATTAGCTTC 59.041 50.000 0.00 0.00 0.00 3.86
2266 4959 3.627237 CCCCCTGCCTTTTATTAGCTTCA 60.627 47.826 0.00 0.00 0.00 3.02
2297 4990 1.922447 ACCATTTGAGCTACATCCCCA 59.078 47.619 0.00 0.00 0.00 4.96
2303 4996 5.645056 TTTGAGCTACATCCCCATTGATA 57.355 39.130 0.00 0.00 0.00 2.15
2309 5002 7.404104 TGAGCTACATCCCCATTGATATCTATT 59.596 37.037 3.98 0.00 0.00 1.73
2311 5004 8.709308 AGCTACATCCCCATTGATATCTATTAC 58.291 37.037 3.98 0.00 0.00 1.89
2369 5062 2.646121 GCACTTGCCAAGCTTACCT 58.354 52.632 3.88 0.00 34.31 3.08
2370 5063 0.523519 GCACTTGCCAAGCTTACCTC 59.476 55.000 3.88 0.00 34.31 3.85
2371 5064 0.798776 CACTTGCCAAGCTTACCTCG 59.201 55.000 3.88 0.00 0.00 4.63
2372 5065 0.955919 ACTTGCCAAGCTTACCTCGC 60.956 55.000 3.88 0.00 0.00 5.03
2373 5066 0.955428 CTTGCCAAGCTTACCTCGCA 60.955 55.000 0.00 0.00 0.00 5.10
2374 5067 0.536233 TTGCCAAGCTTACCTCGCAA 60.536 50.000 0.00 5.85 36.77 4.85
2375 5068 1.234615 TGCCAAGCTTACCTCGCAAC 61.235 55.000 0.00 0.00 0.00 4.17
2376 5069 1.923227 GCCAAGCTTACCTCGCAACC 61.923 60.000 0.00 0.00 0.00 3.77
2377 5070 0.321653 CCAAGCTTACCTCGCAACCT 60.322 55.000 0.00 0.00 0.00 3.50
2378 5071 1.079503 CAAGCTTACCTCGCAACCTC 58.920 55.000 0.00 0.00 0.00 3.85
2379 5072 0.685097 AAGCTTACCTCGCAACCTCA 59.315 50.000 0.00 0.00 0.00 3.86
2380 5073 0.247736 AGCTTACCTCGCAACCTCAG 59.752 55.000 0.00 0.00 0.00 3.35
2381 5074 0.037232 GCTTACCTCGCAACCTCAGT 60.037 55.000 0.00 0.00 0.00 3.41
2382 5075 1.608283 GCTTACCTCGCAACCTCAGTT 60.608 52.381 0.00 0.00 36.33 3.16
2383 5076 2.767505 CTTACCTCGCAACCTCAGTTT 58.232 47.619 0.00 0.00 32.45 2.66
2384 5077 2.922740 TACCTCGCAACCTCAGTTTT 57.077 45.000 0.00 0.00 32.45 2.43
2385 5078 2.052782 ACCTCGCAACCTCAGTTTTT 57.947 45.000 0.00 0.00 32.45 1.94
2404 5097 3.524346 TTTTTGAGAACCCGCCCTT 57.476 47.368 0.00 0.00 0.00 3.95
2405 5098 2.660670 TTTTTGAGAACCCGCCCTTA 57.339 45.000 0.00 0.00 0.00 2.69
2406 5099 2.660670 TTTTGAGAACCCGCCCTTAA 57.339 45.000 0.00 0.00 0.00 1.85
2407 5100 2.194201 TTTGAGAACCCGCCCTTAAG 57.806 50.000 0.00 0.00 0.00 1.85
2408 5101 0.326927 TTGAGAACCCGCCCTTAAGG 59.673 55.000 15.14 15.14 39.47 2.69
2424 5117 7.410120 CCCTTAAGGCTCTTTATTCATTTGT 57.590 36.000 16.70 0.00 0.00 2.83
2425 5118 8.519799 CCCTTAAGGCTCTTTATTCATTTGTA 57.480 34.615 16.70 0.00 0.00 2.41
2426 5119 8.624776 CCCTTAAGGCTCTTTATTCATTTGTAG 58.375 37.037 16.70 0.00 0.00 2.74
2427 5120 8.624776 CCTTAAGGCTCTTTATTCATTTGTAGG 58.375 37.037 9.00 0.00 0.00 3.18
2428 5121 6.456795 AAGGCTCTTTATTCATTTGTAGGC 57.543 37.500 0.00 0.00 0.00 3.93
2429 5122 4.576463 AGGCTCTTTATTCATTTGTAGGCG 59.424 41.667 0.00 0.00 33.89 5.52
2430 5123 4.335594 GGCTCTTTATTCATTTGTAGGCGT 59.664 41.667 0.00 0.00 0.00 5.68
2431 5124 5.526111 GGCTCTTTATTCATTTGTAGGCGTA 59.474 40.000 0.00 0.00 0.00 4.42
2432 5125 6.037830 GGCTCTTTATTCATTTGTAGGCGTAA 59.962 38.462 0.00 0.00 0.00 3.18
2433 5126 7.255139 GGCTCTTTATTCATTTGTAGGCGTAAT 60.255 37.037 0.00 0.00 0.00 1.89
2434 5127 7.798982 GCTCTTTATTCATTTGTAGGCGTAATC 59.201 37.037 0.00 0.00 0.00 1.75
2435 5128 8.725405 TCTTTATTCATTTGTAGGCGTAATCA 57.275 30.769 0.00 0.00 0.00 2.57
2436 5129 9.168451 TCTTTATTCATTTGTAGGCGTAATCAA 57.832 29.630 0.00 0.00 0.00 2.57
2437 5130 9.781834 CTTTATTCATTTGTAGGCGTAATCAAA 57.218 29.630 5.12 5.12 34.95 2.69
2439 5132 9.944663 TTATTCATTTGTAGGCGTAATCAAATC 57.055 29.630 10.41 0.00 38.08 2.17
2440 5133 6.993786 TCATTTGTAGGCGTAATCAAATCA 57.006 33.333 10.41 0.00 38.08 2.57
2441 5134 7.015226 TCATTTGTAGGCGTAATCAAATCAG 57.985 36.000 10.41 4.07 38.08 2.90
2442 5135 6.821160 TCATTTGTAGGCGTAATCAAATCAGA 59.179 34.615 10.41 5.71 38.08 3.27
2443 5136 7.498900 TCATTTGTAGGCGTAATCAAATCAGAT 59.501 33.333 10.41 0.00 38.08 2.90
2444 5137 7.624360 TTTGTAGGCGTAATCAAATCAGATT 57.376 32.000 0.00 0.00 40.99 2.40
2445 5138 6.603237 TGTAGGCGTAATCAAATCAGATTG 57.397 37.500 0.00 0.00 38.60 2.67
2446 5139 6.112734 TGTAGGCGTAATCAAATCAGATTGT 58.887 36.000 0.00 0.00 38.60 2.71
2447 5140 7.269316 TGTAGGCGTAATCAAATCAGATTGTA 58.731 34.615 0.00 0.00 38.60 2.41
2448 5141 6.604735 AGGCGTAATCAAATCAGATTGTAC 57.395 37.500 0.00 0.00 38.60 2.90
2449 5142 6.112734 AGGCGTAATCAAATCAGATTGTACA 58.887 36.000 0.00 0.00 38.60 2.90
2450 5143 6.767902 AGGCGTAATCAAATCAGATTGTACAT 59.232 34.615 0.00 0.00 38.60 2.29
2451 5144 7.041780 AGGCGTAATCAAATCAGATTGTACATC 60.042 37.037 0.00 0.00 38.60 3.06
2452 5145 6.787515 GCGTAATCAAATCAGATTGTACATCG 59.212 38.462 0.00 0.84 38.60 3.84
2453 5146 7.516785 GCGTAATCAAATCAGATTGTACATCGT 60.517 37.037 0.00 0.00 38.60 3.73
2454 5147 7.998767 CGTAATCAAATCAGATTGTACATCGTC 59.001 37.037 0.00 0.00 38.60 4.20
2455 5148 7.848223 AATCAAATCAGATTGTACATCGTCA 57.152 32.000 0.00 0.00 36.88 4.35
2456 5149 7.848223 ATCAAATCAGATTGTACATCGTCAA 57.152 32.000 0.00 0.00 0.00 3.18
2457 5150 7.848223 TCAAATCAGATTGTACATCGTCAAT 57.152 32.000 0.00 0.00 37.04 2.57
2458 5151 7.909267 TCAAATCAGATTGTACATCGTCAATC 58.091 34.615 0.00 9.08 45.67 2.67
2467 5160 8.716646 ATTGTACATCGTCAATCTGAAATACA 57.283 30.769 0.00 0.00 29.74 2.29
2468 5161 8.541133 TTGTACATCGTCAATCTGAAATACAA 57.459 30.769 0.00 0.00 31.50 2.41
2469 5162 8.541133 TGTACATCGTCAATCTGAAATACAAA 57.459 30.769 0.00 0.00 0.00 2.83
2470 5163 8.440059 TGTACATCGTCAATCTGAAATACAAAC 58.560 33.333 0.00 0.00 0.00 2.93
2471 5164 7.672983 ACATCGTCAATCTGAAATACAAACT 57.327 32.000 0.00 0.00 0.00 2.66
2472 5165 7.743104 ACATCGTCAATCTGAAATACAAACTC 58.257 34.615 0.00 0.00 0.00 3.01
2473 5166 7.387673 ACATCGTCAATCTGAAATACAAACTCA 59.612 33.333 0.00 0.00 0.00 3.41
2474 5167 7.722795 TCGTCAATCTGAAATACAAACTCAA 57.277 32.000 0.00 0.00 0.00 3.02
2475 5168 8.148807 TCGTCAATCTGAAATACAAACTCAAA 57.851 30.769 0.00 0.00 0.00 2.69
2476 5169 8.067784 TCGTCAATCTGAAATACAAACTCAAAC 58.932 33.333 0.00 0.00 0.00 2.93
2477 5170 7.855409 CGTCAATCTGAAATACAAACTCAAACA 59.145 33.333 0.00 0.00 0.00 2.83
2478 5171 9.515020 GTCAATCTGAAATACAAACTCAAACAA 57.485 29.630 0.00 0.00 0.00 2.83
2481 5174 9.868277 AATCTGAAATACAAACTCAAACAAACA 57.132 25.926 0.00 0.00 0.00 2.83
2482 5175 8.682128 TCTGAAATACAAACTCAAACAAACAC 57.318 30.769 0.00 0.00 0.00 3.32
2483 5176 7.483375 TCTGAAATACAAACTCAAACAAACACG 59.517 33.333 0.00 0.00 0.00 4.49
2484 5177 5.942325 AATACAAACTCAAACAAACACGC 57.058 34.783 0.00 0.00 0.00 5.34
2485 5178 3.569250 ACAAACTCAAACAAACACGCT 57.431 38.095 0.00 0.00 0.00 5.07
2486 5179 3.908213 ACAAACTCAAACAAACACGCTT 58.092 36.364 0.00 0.00 0.00 4.68
2487 5180 3.917985 ACAAACTCAAACAAACACGCTTC 59.082 39.130 0.00 0.00 0.00 3.86
2488 5181 2.844122 ACTCAAACAAACACGCTTCC 57.156 45.000 0.00 0.00 0.00 3.46
2489 5182 2.365582 ACTCAAACAAACACGCTTCCT 58.634 42.857 0.00 0.00 0.00 3.36
2490 5183 2.752903 ACTCAAACAAACACGCTTCCTT 59.247 40.909 0.00 0.00 0.00 3.36
2491 5184 3.942748 ACTCAAACAAACACGCTTCCTTA 59.057 39.130 0.00 0.00 0.00 2.69
2492 5185 4.396790 ACTCAAACAAACACGCTTCCTTAA 59.603 37.500 0.00 0.00 0.00 1.85
2493 5186 5.067283 ACTCAAACAAACACGCTTCCTTAAT 59.933 36.000 0.00 0.00 0.00 1.40
2494 5187 6.261381 ACTCAAACAAACACGCTTCCTTAATA 59.739 34.615 0.00 0.00 0.00 0.98
2495 5188 7.028926 TCAAACAAACACGCTTCCTTAATAA 57.971 32.000 0.00 0.00 0.00 1.40
2496 5189 7.136119 TCAAACAAACACGCTTCCTTAATAAG 58.864 34.615 0.00 0.00 0.00 1.73
2497 5190 5.043189 ACAAACACGCTTCCTTAATAAGC 57.957 39.130 11.02 11.02 44.72 3.09
2503 5196 2.839975 GCTTCCTTAATAAGCGCCTCT 58.160 47.619 2.29 0.00 39.92 3.69
2504 5197 2.803386 GCTTCCTTAATAAGCGCCTCTC 59.197 50.000 2.29 0.00 39.92 3.20
2505 5198 3.493524 GCTTCCTTAATAAGCGCCTCTCT 60.494 47.826 2.29 0.00 39.92 3.10
2506 5199 3.735237 TCCTTAATAAGCGCCTCTCTG 57.265 47.619 2.29 0.00 0.00 3.35
2507 5200 2.365617 TCCTTAATAAGCGCCTCTCTGG 59.634 50.000 2.29 0.00 39.35 3.86
2517 5210 3.842869 CCTCTCTGGCACTTGTACC 57.157 57.895 0.00 0.00 0.00 3.34
2518 5211 0.250513 CCTCTCTGGCACTTGTACCC 59.749 60.000 0.00 0.00 0.00 3.69
2519 5212 0.976641 CTCTCTGGCACTTGTACCCA 59.023 55.000 0.00 0.00 0.00 4.51
2520 5213 1.556911 CTCTCTGGCACTTGTACCCAT 59.443 52.381 0.00 0.00 0.00 4.00
2521 5214 1.278985 TCTCTGGCACTTGTACCCATG 59.721 52.381 0.00 0.00 0.00 3.66
2522 5215 1.278985 CTCTGGCACTTGTACCCATGA 59.721 52.381 0.00 0.00 0.00 3.07
2523 5216 1.702401 TCTGGCACTTGTACCCATGAA 59.298 47.619 0.00 0.00 0.00 2.57
2524 5217 2.107378 TCTGGCACTTGTACCCATGAAA 59.893 45.455 0.00 0.00 0.00 2.69
2525 5218 3.091545 CTGGCACTTGTACCCATGAAAT 58.908 45.455 0.00 0.00 0.00 2.17
2526 5219 4.018870 TCTGGCACTTGTACCCATGAAATA 60.019 41.667 0.00 0.00 0.00 1.40
2527 5220 4.013728 TGGCACTTGTACCCATGAAATAC 58.986 43.478 0.00 0.00 0.00 1.89
2528 5221 4.013728 GGCACTTGTACCCATGAAATACA 58.986 43.478 0.00 0.00 0.00 2.29
2529 5222 4.461081 GGCACTTGTACCCATGAAATACAA 59.539 41.667 12.77 12.77 36.66 2.41
2530 5223 5.047660 GGCACTTGTACCCATGAAATACAAA 60.048 40.000 13.77 3.63 38.11 2.83
2531 5224 5.861787 GCACTTGTACCCATGAAATACAAAC 59.138 40.000 13.77 6.59 38.11 2.93
2532 5225 6.083630 CACTTGTACCCATGAAATACAAACG 58.916 40.000 13.77 8.47 38.11 3.60
2533 5226 4.688511 TGTACCCATGAAATACAAACGC 57.311 40.909 0.00 0.00 0.00 4.84
2534 5227 3.440872 TGTACCCATGAAATACAAACGCC 59.559 43.478 0.00 0.00 0.00 5.68
2535 5228 2.520069 ACCCATGAAATACAAACGCCA 58.480 42.857 0.00 0.00 0.00 5.69
2536 5229 3.096092 ACCCATGAAATACAAACGCCAT 58.904 40.909 0.00 0.00 0.00 4.40
2537 5230 3.513515 ACCCATGAAATACAAACGCCATT 59.486 39.130 0.00 0.00 0.00 3.16
2538 5231 4.020662 ACCCATGAAATACAAACGCCATTT 60.021 37.500 0.00 0.00 0.00 2.32
2546 5239 2.712057 CAAACGCCATTTGCTTCTCT 57.288 45.000 0.00 0.00 41.30 3.10
2547 5240 3.829886 CAAACGCCATTTGCTTCTCTA 57.170 42.857 0.00 0.00 41.30 2.43
2548 5241 3.492313 CAAACGCCATTTGCTTCTCTAC 58.508 45.455 0.00 0.00 41.30 2.59
2549 5242 2.770164 ACGCCATTTGCTTCTCTACT 57.230 45.000 0.00 0.00 38.05 2.57
2550 5243 2.622436 ACGCCATTTGCTTCTCTACTC 58.378 47.619 0.00 0.00 38.05 2.59
2551 5244 2.028112 ACGCCATTTGCTTCTCTACTCA 60.028 45.455 0.00 0.00 38.05 3.41
2552 5245 2.349886 CGCCATTTGCTTCTCTACTCAC 59.650 50.000 0.00 0.00 38.05 3.51
2553 5246 3.338249 GCCATTTGCTTCTCTACTCACA 58.662 45.455 0.00 0.00 36.87 3.58
2554 5247 3.944015 GCCATTTGCTTCTCTACTCACAT 59.056 43.478 0.00 0.00 36.87 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.489489 AGATCTAAAGAGAGCCAACAAATATGA 58.511 33.333 0.00 0.00 39.01 2.15
2 3 8.674263 AGATCTAAAGAGAGCCAACAAATATG 57.326 34.615 0.00 0.00 39.01 1.78
20 2363 5.070446 AGACACACCAACTGTCAAGATCTAA 59.930 40.000 0.00 0.00 40.56 2.10
21 2364 4.588951 AGACACACCAACTGTCAAGATCTA 59.411 41.667 0.00 0.00 40.56 1.98
22 2365 3.389329 AGACACACCAACTGTCAAGATCT 59.611 43.478 0.00 0.00 40.56 2.75
30 2373 3.646162 TCCTTGATAGACACACCAACTGT 59.354 43.478 0.00 0.00 0.00 3.55
31 2374 4.021104 TCTCCTTGATAGACACACCAACTG 60.021 45.833 0.00 0.00 0.00 3.16
38 2381 5.893824 TCTATTGCTCTCCTTGATAGACACA 59.106 40.000 0.00 0.00 0.00 3.72
50 2393 5.157940 TGATAGCCAATCTATTGCTCTCC 57.842 43.478 0.00 0.00 38.09 3.71
71 2414 3.414700 GTCCAAGTCGCCGCACTG 61.415 66.667 0.00 0.00 0.00 3.66
72 2415 3.240134 ATGTCCAAGTCGCCGCACT 62.240 57.895 0.00 0.00 0.00 4.40
76 2419 0.108615 AGAAGATGTCCAAGTCGCCG 60.109 55.000 0.00 0.00 0.00 6.46
85 2428 5.973565 CAGAACAACACAAAAGAAGATGTCC 59.026 40.000 0.00 0.00 0.00 4.02
86 2429 5.456822 GCAGAACAACACAAAAGAAGATGTC 59.543 40.000 0.00 0.00 0.00 3.06
87 2430 5.343249 GCAGAACAACACAAAAGAAGATGT 58.657 37.500 0.00 0.00 0.00 3.06
88 2431 4.438797 CGCAGAACAACACAAAAGAAGATG 59.561 41.667 0.00 0.00 0.00 2.90
89 2432 4.498009 CCGCAGAACAACACAAAAGAAGAT 60.498 41.667 0.00 0.00 0.00 2.40
90 2433 3.181501 CCGCAGAACAACACAAAAGAAGA 60.182 43.478 0.00 0.00 0.00 2.87
91 2434 3.108144 CCGCAGAACAACACAAAAGAAG 58.892 45.455 0.00 0.00 0.00 2.85
93 2436 2.088423 ACCGCAGAACAACACAAAAGA 58.912 42.857 0.00 0.00 0.00 2.52
94 2437 2.559998 ACCGCAGAACAACACAAAAG 57.440 45.000 0.00 0.00 0.00 2.27
95 2438 3.243234 CCATACCGCAGAACAACACAAAA 60.243 43.478 0.00 0.00 0.00 2.44
98 2441 1.202710 ACCATACCGCAGAACAACACA 60.203 47.619 0.00 0.00 0.00 3.72
139 2486 3.719268 TGTAATCCATCACCACTGCTT 57.281 42.857 0.00 0.00 0.00 3.91
141 2488 2.098117 GCTTGTAATCCATCACCACTGC 59.902 50.000 0.00 0.00 0.00 4.40
143 2490 4.012374 CAAGCTTGTAATCCATCACCACT 58.988 43.478 18.65 0.00 0.00 4.00
157 2504 0.534203 CCCACGTGGTACAAGCTTGT 60.534 55.000 32.97 32.97 44.16 3.16
169 2516 3.131396 GGTTAGAGCATTATCCCACGTG 58.869 50.000 9.08 9.08 0.00 4.49
177 2525 5.099042 AGAAACACCGGTTAGAGCATTAT 57.901 39.130 2.97 0.00 35.82 1.28
185 2533 5.880054 ATCATTGAAGAAACACCGGTTAG 57.120 39.130 2.97 0.00 35.82 2.34
228 2576 1.066858 AGACCACAATAGCCACTCGTG 60.067 52.381 0.00 0.00 0.00 4.35
229 2577 1.267121 AGACCACAATAGCCACTCGT 58.733 50.000 0.00 0.00 0.00 4.18
243 2591 8.314021 CACCATATCATGCTTTATACTAGACCA 58.686 37.037 0.00 0.00 0.00 4.02
249 2597 6.600822 GCCATCACCATATCATGCTTTATACT 59.399 38.462 0.00 0.00 0.00 2.12
250 2598 6.375174 TGCCATCACCATATCATGCTTTATAC 59.625 38.462 0.00 0.00 0.00 1.47
251 2599 6.483405 TGCCATCACCATATCATGCTTTATA 58.517 36.000 0.00 0.00 0.00 0.98
252 2600 5.326900 TGCCATCACCATATCATGCTTTAT 58.673 37.500 0.00 0.00 0.00 1.40
288 2636 7.155655 ACACTAAACCAACGGTAAAGAAAAA 57.844 32.000 0.00 0.00 33.12 1.94
327 2676 2.594962 CGATTGTATGCCGCCCGTC 61.595 63.158 0.00 0.00 0.00 4.79
336 2685 6.020281 CGTCCTCTTCTTTCTTCGATTGTATG 60.020 42.308 0.00 0.00 0.00 2.39
345 2694 5.632244 ACTAGTCGTCCTCTTCTTTCTTC 57.368 43.478 0.00 0.00 0.00 2.87
346 2695 6.885376 TCATACTAGTCGTCCTCTTCTTTCTT 59.115 38.462 0.00 0.00 0.00 2.52
352 2701 9.798994 TTAAAATTCATACTAGTCGTCCTCTTC 57.201 33.333 0.00 0.00 0.00 2.87
381 2730 9.364989 TGAAAGGACAACTGAAAACTAAAATTG 57.635 29.630 0.00 0.00 0.00 2.32
386 2735 8.062065 ACAATGAAAGGACAACTGAAAACTAA 57.938 30.769 0.00 0.00 0.00 2.24
389 2738 7.480810 AGTACAATGAAAGGACAACTGAAAAC 58.519 34.615 0.00 0.00 0.00 2.43
443 2810 4.946157 AGACACCAAAAGGCATCTTAGATG 59.054 41.667 17.16 17.16 32.01 2.90
447 2814 4.724399 TGAAGACACCAAAAGGCATCTTA 58.276 39.130 0.00 0.00 32.01 2.10
606 2983 8.603242 ACTGGGATTCGTATAAAATCATGTAC 57.397 34.615 9.94 0.00 35.30 2.90
621 2998 5.153513 CAACACATGTAAAACTGGGATTCG 58.846 41.667 0.00 0.00 0.00 3.34
628 3005 3.025287 GGGGCAACACATGTAAAACTG 57.975 47.619 0.00 0.00 42.67 3.16
696 3077 6.693545 GGATACTCGTTGAATCTGAACTGTAG 59.306 42.308 0.00 0.00 0.00 2.74
727 3108 9.917872 CGACGACGTATGAGATAATTCTATAAT 57.082 33.333 0.00 0.00 31.18 1.28
737 3126 3.249080 TCAATGCGACGACGTATGAGATA 59.751 43.478 11.65 0.00 43.26 1.98
738 3127 2.032924 TCAATGCGACGACGTATGAGAT 59.967 45.455 11.65 0.00 43.26 2.75
739 3128 1.399089 TCAATGCGACGACGTATGAGA 59.601 47.619 11.65 10.01 43.26 3.27
740 3129 1.822581 TCAATGCGACGACGTATGAG 58.177 50.000 11.65 7.96 43.26 2.90
741 3130 2.265647 TTCAATGCGACGACGTATGA 57.734 45.000 11.65 9.20 43.26 2.15
742 3131 3.569304 AATTCAATGCGACGACGTATG 57.431 42.857 11.65 7.12 43.26 2.39
743 3132 3.181774 GCTAATTCAATGCGACGACGTAT 59.818 43.478 9.33 7.13 45.67 3.06
744 3133 2.532723 GCTAATTCAATGCGACGACGTA 59.467 45.455 9.33 4.61 41.98 3.57
745 3134 1.323534 GCTAATTCAATGCGACGACGT 59.676 47.619 9.33 0.00 41.98 4.34
746 3135 1.332028 GGCTAATTCAATGCGACGACG 60.332 52.381 2.12 2.12 42.93 5.12
747 3136 1.003866 GGGCTAATTCAATGCGACGAC 60.004 52.381 0.00 0.00 0.00 4.34
748 3137 1.295792 GGGCTAATTCAATGCGACGA 58.704 50.000 0.00 0.00 0.00 4.20
749 3138 0.042188 CGGGCTAATTCAATGCGACG 60.042 55.000 0.00 0.00 0.00 5.12
750 3139 1.014352 ACGGGCTAATTCAATGCGAC 58.986 50.000 0.00 0.00 0.00 5.19
751 3140 2.206750 GTACGGGCTAATTCAATGCGA 58.793 47.619 0.00 0.00 0.00 5.10
752 3141 1.263217 GGTACGGGCTAATTCAATGCG 59.737 52.381 0.00 0.00 0.00 4.73
753 3142 2.294074 TGGTACGGGCTAATTCAATGC 58.706 47.619 0.00 0.00 0.00 3.56
754 3143 5.333798 CGTTATGGTACGGGCTAATTCAATG 60.334 44.000 0.00 0.00 37.86 2.82
755 3144 4.753107 CGTTATGGTACGGGCTAATTCAAT 59.247 41.667 0.00 0.00 37.86 2.57
756 3145 4.121317 CGTTATGGTACGGGCTAATTCAA 58.879 43.478 0.00 0.00 37.86 2.69
757 3146 3.384146 TCGTTATGGTACGGGCTAATTCA 59.616 43.478 0.00 0.00 41.67 2.57
758 3147 3.737774 GTCGTTATGGTACGGGCTAATTC 59.262 47.826 0.00 0.00 41.67 2.17
759 3148 3.132646 TGTCGTTATGGTACGGGCTAATT 59.867 43.478 0.00 0.00 41.67 1.40
760 3149 2.694628 TGTCGTTATGGTACGGGCTAAT 59.305 45.455 0.00 0.00 41.67 1.73
761 3150 2.098614 TGTCGTTATGGTACGGGCTAA 58.901 47.619 0.00 0.00 41.67 3.09
771 3160 0.874607 GGCTAGGCGTGTCGTTATGG 60.875 60.000 0.00 0.00 0.00 2.74
794 3183 9.528489 AATGTGACCCAAAAATTAGTGTACTAT 57.472 29.630 0.00 0.00 0.00 2.12
795 3184 8.927675 AATGTGACCCAAAAATTAGTGTACTA 57.072 30.769 0.00 0.00 0.00 1.82
796 3185 7.039993 GGAATGTGACCCAAAAATTAGTGTACT 60.040 37.037 0.00 0.00 0.00 2.73
797 3186 7.088272 GGAATGTGACCCAAAAATTAGTGTAC 58.912 38.462 0.00 0.00 0.00 2.90
798 3187 6.209788 GGGAATGTGACCCAAAAATTAGTGTA 59.790 38.462 0.00 0.00 46.05 2.90
799 3188 5.011635 GGGAATGTGACCCAAAAATTAGTGT 59.988 40.000 0.00 0.00 46.05 3.55
800 3189 5.478407 GGGAATGTGACCCAAAAATTAGTG 58.522 41.667 0.00 0.00 46.05 2.74
820 3215 0.473694 AGGACACCACACTGATGGGA 60.474 55.000 7.46 0.00 44.81 4.37
822 3217 0.979665 AGAGGACACCACACTGATGG 59.020 55.000 0.00 1.90 46.10 3.51
887 3282 2.524148 GCTTGTTTGGGGTGGCCT 60.524 61.111 3.32 0.00 0.00 5.19
909 3304 1.011968 TAGGATGCGTGTGTTCGTGC 61.012 55.000 0.00 0.00 0.00 5.34
948 3343 3.760684 GAGAGAAAGATTGCACCAATGGT 59.239 43.478 0.00 0.00 33.90 3.55
979 3374 1.635663 GATCGGGTTGTGTTGGCTCG 61.636 60.000 0.00 0.00 0.00 5.03
999 3394 1.155042 GAGCATTCGATGGAGGCATC 58.845 55.000 6.30 0.00 0.00 3.91
1000 3395 0.471191 TGAGCATTCGATGGAGGCAT 59.529 50.000 6.30 0.00 0.00 4.40
1001 3396 0.462581 GTGAGCATTCGATGGAGGCA 60.463 55.000 6.30 0.00 0.00 4.75
1002 3397 0.462581 TGTGAGCATTCGATGGAGGC 60.463 55.000 0.00 0.00 0.00 4.70
1003 3398 1.938577 CTTGTGAGCATTCGATGGAGG 59.061 52.381 0.00 0.00 0.00 4.30
1004 3399 2.897436 TCTTGTGAGCATTCGATGGAG 58.103 47.619 0.00 0.00 0.00 3.86
1005 3400 3.055891 TCTTCTTGTGAGCATTCGATGGA 60.056 43.478 0.00 0.00 0.00 3.41
1006 3401 3.264947 TCTTCTTGTGAGCATTCGATGG 58.735 45.455 0.00 0.00 0.00 3.51
1007 3402 4.569564 TCATCTTCTTGTGAGCATTCGATG 59.430 41.667 0.00 0.00 0.00 3.84
1008 3403 4.569966 GTCATCTTCTTGTGAGCATTCGAT 59.430 41.667 0.00 0.00 0.00 3.59
1009 3404 3.928992 GTCATCTTCTTGTGAGCATTCGA 59.071 43.478 0.00 0.00 0.00 3.71
1010 3405 3.063180 GGTCATCTTCTTGTGAGCATTCG 59.937 47.826 0.00 0.00 41.26 3.34
1011 3406 4.005650 TGGTCATCTTCTTGTGAGCATTC 58.994 43.478 3.43 0.00 44.93 2.67
1012 3407 4.025040 TGGTCATCTTCTTGTGAGCATT 57.975 40.909 3.43 0.00 44.93 3.56
1013 3408 3.708403 TGGTCATCTTCTTGTGAGCAT 57.292 42.857 3.43 0.00 44.93 3.79
1015 3410 3.603532 TCATGGTCATCTTCTTGTGAGC 58.396 45.455 0.00 0.00 41.79 4.26
1120 3515 4.803426 CTCGCACGAGTGGCCCTC 62.803 72.222 11.82 5.66 37.47 4.30
1386 3781 1.154263 CTCGTCGACGACCTTGACC 60.154 63.158 34.97 0.00 44.22 4.02
1388 3783 1.572941 CACTCGTCGACGACCTTGA 59.427 57.895 34.97 15.27 44.22 3.02
1414 3809 1.809619 CGTCATCGCACCCGTTCAT 60.810 57.895 0.00 0.00 35.54 2.57
1428 3823 3.573772 CTGGAAGGCGTGCTCGTCA 62.574 63.158 15.76 3.45 44.74 4.35
1429 3824 2.811317 CTGGAAGGCGTGCTCGTC 60.811 66.667 4.29 4.29 42.44 4.20
1452 3847 3.833176 GACGACGTTGTTGCGGCAC 62.833 63.158 10.42 0.00 40.47 5.01
1539 3934 2.699073 GCGTCATGCATCTGACCAT 58.301 52.632 13.49 0.00 45.45 3.55
1577 3989 8.539770 TCTTCAAATAAGCAAGAGAACACTAG 57.460 34.615 0.00 0.00 0.00 2.57
1578 3990 8.774586 GTTCTTCAAATAAGCAAGAGAACACTA 58.225 33.333 8.08 0.00 34.89 2.74
1579 3991 7.255277 GGTTCTTCAAATAAGCAAGAGAACACT 60.255 37.037 13.32 0.00 36.02 3.55
1580 3992 6.858478 GGTTCTTCAAATAAGCAAGAGAACAC 59.142 38.462 13.32 2.43 36.02 3.32
1602 4014 2.034053 CACCACGCATACACAAAAGGTT 59.966 45.455 0.00 0.00 0.00 3.50
1603 4015 1.606668 CACCACGCATACACAAAAGGT 59.393 47.619 0.00 0.00 0.00 3.50
1604 4016 1.068610 CCACCACGCATACACAAAAGG 60.069 52.381 0.00 0.00 0.00 3.11
1605 4017 1.606668 ACCACCACGCATACACAAAAG 59.393 47.619 0.00 0.00 0.00 2.27
1607 4019 0.947960 CACCACCACGCATACACAAA 59.052 50.000 0.00 0.00 0.00 2.83
1610 4022 2.686816 GGCACCACCACGCATACAC 61.687 63.158 0.00 0.00 38.86 2.90
1611 4023 2.359354 GGCACCACCACGCATACA 60.359 61.111 0.00 0.00 38.86 2.29
1612 4024 1.241315 AAAGGCACCACCACGCATAC 61.241 55.000 0.00 0.00 43.14 2.39
1613 4025 1.074072 AAAGGCACCACCACGCATA 59.926 52.632 0.00 0.00 43.14 3.14
1614 4026 2.203480 AAAGGCACCACCACGCAT 60.203 55.556 0.00 0.00 43.14 4.73
1615 4027 2.974692 ATCAAAGGCACCACCACGCA 62.975 55.000 0.00 0.00 43.14 5.24
1616 4028 2.268076 ATCAAAGGCACCACCACGC 61.268 57.895 0.00 0.00 43.14 5.34
1617 4029 1.172180 ACATCAAAGGCACCACCACG 61.172 55.000 0.00 0.00 43.14 4.94
1618 4030 1.812571 CTACATCAAAGGCACCACCAC 59.187 52.381 0.00 0.00 43.14 4.16
1619 4031 1.423541 ACTACATCAAAGGCACCACCA 59.576 47.619 0.00 0.00 43.14 4.17
1620 4032 1.812571 CACTACATCAAAGGCACCACC 59.187 52.381 0.00 0.00 39.61 4.61
1645 4057 8.057536 ACACTACATCAAAGGTGTGTTAAAAA 57.942 30.769 0.00 0.00 40.71 1.94
1646 4058 7.633193 ACACTACATCAAAGGTGTGTTAAAA 57.367 32.000 0.00 0.00 40.71 1.52
1649 4061 8.734218 TTTAACACTACATCAAAGGTGTGTTA 57.266 30.769 11.02 11.02 43.74 2.41
1650 4062 7.633193 TTTAACACTACATCAAAGGTGTGTT 57.367 32.000 12.70 12.70 46.11 3.32
1651 4063 7.633193 TTTTAACACTACATCAAAGGTGTGT 57.367 32.000 0.00 0.00 41.26 3.72
1653 4065 8.232913 ACATTTTAACACTACATCAAAGGTGT 57.767 30.769 0.00 0.00 43.51 4.16
1654 4066 8.967218 CAACATTTTAACACTACATCAAAGGTG 58.033 33.333 0.00 0.00 35.99 4.00
1655 4067 8.691797 ACAACATTTTAACACTACATCAAAGGT 58.308 29.630 0.00 0.00 0.00 3.50
1662 4074 8.879759 CGAGGATACAACATTTTAACACTACAT 58.120 33.333 0.00 0.00 41.41 2.29
1679 4176 7.652105 GCAGTTTACTTATTCATCGAGGATACA 59.348 37.037 0.00 0.00 41.41 2.29
1682 4179 6.821388 AGCAGTTTACTTATTCATCGAGGAT 58.179 36.000 0.00 0.00 0.00 3.24
1731 4229 4.142469 GGTGATTGGTAATTAGCAAAGCGT 60.142 41.667 28.26 15.50 45.38 5.07
1733 4231 5.358160 AGAGGTGATTGGTAATTAGCAAAGC 59.642 40.000 28.26 22.35 45.38 3.51
1735 4233 7.775053 AAAGAGGTGATTGGTAATTAGCAAA 57.225 32.000 28.26 14.25 45.38 3.68
1737 4235 6.719370 ACAAAAGAGGTGATTGGTAATTAGCA 59.281 34.615 13.22 13.22 0.00 3.49
1756 4254 6.075310 TGCAATTTTAGCGAACGTAACAAAAG 60.075 34.615 0.00 0.00 33.85 2.27
1793 4291 1.888512 GGTGTGTGATGGTCTTGCAAT 59.111 47.619 0.00 0.00 0.00 3.56
1806 4304 0.110486 AGTAAGGCCCTTGGTGTGTG 59.890 55.000 6.16 0.00 0.00 3.82
1807 4305 0.110486 CAGTAAGGCCCTTGGTGTGT 59.890 55.000 6.16 0.00 0.00 3.72
1838 4336 1.356398 TCCGGGCACTAGGGAATTTTT 59.644 47.619 0.00 0.00 0.00 1.94
1839 4337 0.996583 TCCGGGCACTAGGGAATTTT 59.003 50.000 0.00 0.00 0.00 1.82
1840 4338 0.546598 CTCCGGGCACTAGGGAATTT 59.453 55.000 0.00 0.00 0.00 1.82
1841 4339 0.620700 ACTCCGGGCACTAGGGAATT 60.621 55.000 0.00 0.00 0.00 2.17
1842 4340 0.620700 AACTCCGGGCACTAGGGAAT 60.621 55.000 0.00 0.00 0.00 3.01
1843 4341 0.838987 AAACTCCGGGCACTAGGGAA 60.839 55.000 0.00 0.00 0.00 3.97
1845 4343 0.906775 TAAAACTCCGGGCACTAGGG 59.093 55.000 0.00 0.00 0.00 3.53
1846 4344 1.406477 GGTAAAACTCCGGGCACTAGG 60.406 57.143 0.00 0.00 0.00 3.02
1847 4345 1.738030 CGGTAAAACTCCGGGCACTAG 60.738 57.143 0.00 0.00 43.68 2.57
1850 4348 1.004679 TCGGTAAAACTCCGGGCAC 60.005 57.895 0.00 0.00 46.82 5.01
1854 4352 0.037605 AGCACTCGGTAAAACTCCGG 60.038 55.000 0.00 0.00 46.82 5.14
1885 4546 5.587289 TCGCATTCTTTTTGTTTGCTAACT 58.413 33.333 12.20 0.00 35.24 2.24
1889 4550 3.798337 CACTCGCATTCTTTTTGTTTGCT 59.202 39.130 0.00 0.00 0.00 3.91
1945 4610 1.531739 GGAAAACCTCGCCATTGCCA 61.532 55.000 0.00 0.00 0.00 4.92
1954 4619 3.488090 GCGCTCCGGAAAACCTCG 61.488 66.667 5.23 3.66 0.00 4.63
1976 4641 5.096443 TGTGGAGGCTGATTTTTGTTTTT 57.904 34.783 0.00 0.00 0.00 1.94
1977 4642 4.751767 TGTGGAGGCTGATTTTTGTTTT 57.248 36.364 0.00 0.00 0.00 2.43
1978 4643 4.081198 TGTTGTGGAGGCTGATTTTTGTTT 60.081 37.500 0.00 0.00 0.00 2.83
1981 4646 3.731652 TGTTGTGGAGGCTGATTTTTG 57.268 42.857 0.00 0.00 0.00 2.44
2056 4721 2.706341 TAACTGGGCTGGGAGGTGGT 62.706 60.000 0.00 0.00 0.00 4.16
2118 4802 0.253327 GAGACCTCCCAAAAGCCGAT 59.747 55.000 0.00 0.00 0.00 4.18
2170 4862 4.755123 CGAGATATTATTTTCCCCGCAGTT 59.245 41.667 0.00 0.00 0.00 3.16
2171 4863 4.315803 CGAGATATTATTTTCCCCGCAGT 58.684 43.478 0.00 0.00 0.00 4.40
2220 4913 2.297597 CGATACCTCCCATCTCCAACTC 59.702 54.545 0.00 0.00 0.00 3.01
2258 4951 8.623903 CAAATGGTAGAGCATTTATGAAGCTAA 58.376 33.333 16.86 0.00 39.02 3.09
2351 5044 0.523519 GAGGTAAGCTTGGCAAGTGC 59.476 55.000 26.71 15.56 41.14 4.40
2352 5045 0.798776 CGAGGTAAGCTTGGCAAGTG 59.201 55.000 26.71 5.59 0.00 3.16
2353 5046 0.955919 GCGAGGTAAGCTTGGCAAGT 60.956 55.000 26.71 11.96 0.00 3.16
2354 5047 0.955428 TGCGAGGTAAGCTTGGCAAG 60.955 55.000 22.75 22.75 33.03 4.01
2355 5048 0.536233 TTGCGAGGTAAGCTTGGCAA 60.536 50.000 9.86 13.29 41.48 4.52
2356 5049 1.072332 TTGCGAGGTAAGCTTGGCA 59.928 52.632 9.86 7.95 34.02 4.92
2357 5050 1.502190 GTTGCGAGGTAAGCTTGGC 59.498 57.895 9.86 5.35 35.28 4.52
2358 5051 0.321653 AGGTTGCGAGGTAAGCTTGG 60.322 55.000 9.86 0.00 32.63 3.61
2359 5052 1.079503 GAGGTTGCGAGGTAAGCTTG 58.920 55.000 9.86 0.00 36.26 4.01
2360 5053 0.685097 TGAGGTTGCGAGGTAAGCTT 59.315 50.000 3.48 3.48 36.26 3.74
2361 5054 0.247736 CTGAGGTTGCGAGGTAAGCT 59.752 55.000 0.00 0.00 38.53 3.74
2362 5055 0.037232 ACTGAGGTTGCGAGGTAAGC 60.037 55.000 0.00 0.00 0.00 3.09
2363 5056 2.457366 AACTGAGGTTGCGAGGTAAG 57.543 50.000 0.00 0.00 33.96 2.34
2364 5057 2.922740 AAACTGAGGTTGCGAGGTAA 57.077 45.000 0.00 0.00 35.63 2.85
2365 5058 2.922740 AAAACTGAGGTTGCGAGGTA 57.077 45.000 0.00 0.00 35.63 3.08
2366 5059 2.052782 AAAAACTGAGGTTGCGAGGT 57.947 45.000 0.00 0.00 35.63 3.85
2386 5079 2.660670 TAAGGGCGGGTTCTCAAAAA 57.339 45.000 0.00 0.00 0.00 1.94
2387 5080 2.510613 CTTAAGGGCGGGTTCTCAAAA 58.489 47.619 0.00 0.00 0.00 2.44
2388 5081 1.271707 CCTTAAGGGCGGGTTCTCAAA 60.272 52.381 14.25 0.00 0.00 2.69
2389 5082 0.326927 CCTTAAGGGCGGGTTCTCAA 59.673 55.000 14.25 0.00 0.00 3.02
2390 5083 1.988015 CCTTAAGGGCGGGTTCTCA 59.012 57.895 14.25 0.00 0.00 3.27
2391 5084 4.957164 CCTTAAGGGCGGGTTCTC 57.043 61.111 14.25 0.00 0.00 2.87
2400 5093 7.410120 ACAAATGAATAAAGAGCCTTAAGGG 57.590 36.000 23.06 5.18 35.18 3.95
2401 5094 8.624776 CCTACAAATGAATAAAGAGCCTTAAGG 58.375 37.037 17.81 17.81 38.53 2.69
2402 5095 8.131731 GCCTACAAATGAATAAAGAGCCTTAAG 58.868 37.037 0.00 0.00 0.00 1.85
2403 5096 7.201696 CGCCTACAAATGAATAAAGAGCCTTAA 60.202 37.037 0.00 0.00 0.00 1.85
2404 5097 6.260050 CGCCTACAAATGAATAAAGAGCCTTA 59.740 38.462 0.00 0.00 0.00 2.69
2405 5098 5.066505 CGCCTACAAATGAATAAAGAGCCTT 59.933 40.000 0.00 0.00 0.00 4.35
2406 5099 4.576463 CGCCTACAAATGAATAAAGAGCCT 59.424 41.667 0.00 0.00 0.00 4.58
2407 5100 4.335594 ACGCCTACAAATGAATAAAGAGCC 59.664 41.667 0.00 0.00 0.00 4.70
2408 5101 5.485662 ACGCCTACAAATGAATAAAGAGC 57.514 39.130 0.00 0.00 0.00 4.09
2409 5102 8.826710 TGATTACGCCTACAAATGAATAAAGAG 58.173 33.333 0.00 0.00 0.00 2.85
2410 5103 8.725405 TGATTACGCCTACAAATGAATAAAGA 57.275 30.769 0.00 0.00 0.00 2.52
2411 5104 9.781834 TTTGATTACGCCTACAAATGAATAAAG 57.218 29.630 0.00 0.00 0.00 1.85
2413 5106 9.944663 GATTTGATTACGCCTACAAATGAATAA 57.055 29.630 13.14 0.00 41.11 1.40
2414 5107 9.114952 TGATTTGATTACGCCTACAAATGAATA 57.885 29.630 13.14 0.17 41.11 1.75
2415 5108 7.995289 TGATTTGATTACGCCTACAAATGAAT 58.005 30.769 13.14 0.00 41.11 2.57
2416 5109 7.335673 TCTGATTTGATTACGCCTACAAATGAA 59.664 33.333 13.14 4.44 41.11 2.57
2417 5110 6.821160 TCTGATTTGATTACGCCTACAAATGA 59.179 34.615 13.14 6.76 41.11 2.57
2418 5111 7.015226 TCTGATTTGATTACGCCTACAAATG 57.985 36.000 13.14 4.09 41.11 2.32
2419 5112 7.807977 ATCTGATTTGATTACGCCTACAAAT 57.192 32.000 0.00 0.00 42.83 2.32
2420 5113 7.120579 ACAATCTGATTTGATTACGCCTACAAA 59.879 33.333 0.00 0.00 35.18 2.83
2421 5114 6.597672 ACAATCTGATTTGATTACGCCTACAA 59.402 34.615 0.00 0.00 35.18 2.41
2422 5115 6.112734 ACAATCTGATTTGATTACGCCTACA 58.887 36.000 0.00 0.00 35.18 2.74
2423 5116 6.604735 ACAATCTGATTTGATTACGCCTAC 57.395 37.500 0.00 0.00 35.18 3.18
2424 5117 7.269316 TGTACAATCTGATTTGATTACGCCTA 58.731 34.615 0.00 0.00 35.18 3.93
2425 5118 6.112734 TGTACAATCTGATTTGATTACGCCT 58.887 36.000 0.00 0.00 35.18 5.52
2426 5119 6.358118 TGTACAATCTGATTTGATTACGCC 57.642 37.500 0.00 0.00 35.18 5.68
2427 5120 6.787515 CGATGTACAATCTGATTTGATTACGC 59.212 38.462 0.00 0.00 35.18 4.42
2428 5121 7.841486 ACGATGTACAATCTGATTTGATTACG 58.159 34.615 0.00 6.25 35.18 3.18
2429 5122 8.817100 TGACGATGTACAATCTGATTTGATTAC 58.183 33.333 0.00 1.64 35.18 1.89
2430 5123 8.940768 TGACGATGTACAATCTGATTTGATTA 57.059 30.769 0.00 0.00 35.18 1.75
2431 5124 7.848223 TGACGATGTACAATCTGATTTGATT 57.152 32.000 0.00 0.00 37.16 2.57
2432 5125 7.848223 TTGACGATGTACAATCTGATTTGAT 57.152 32.000 0.00 0.00 0.00 2.57
2433 5126 7.848223 ATTGACGATGTACAATCTGATTTGA 57.152 32.000 0.00 0.00 32.26 2.69
2442 5135 8.716646 TGTATTTCAGATTGACGATGTACAAT 57.283 30.769 0.00 0.00 39.06 2.71
2443 5136 8.541133 TTGTATTTCAGATTGACGATGTACAA 57.459 30.769 0.00 0.00 0.00 2.41
2444 5137 8.440059 GTTTGTATTTCAGATTGACGATGTACA 58.560 33.333 0.00 0.00 0.00 2.90
2445 5138 8.656849 AGTTTGTATTTCAGATTGACGATGTAC 58.343 33.333 0.00 0.00 0.00 2.90
2446 5139 8.771920 AGTTTGTATTTCAGATTGACGATGTA 57.228 30.769 0.00 0.00 0.00 2.29
2447 5140 7.387673 TGAGTTTGTATTTCAGATTGACGATGT 59.612 33.333 0.00 0.00 0.00 3.06
2448 5141 7.742151 TGAGTTTGTATTTCAGATTGACGATG 58.258 34.615 0.00 0.00 0.00 3.84
2449 5142 7.905604 TGAGTTTGTATTTCAGATTGACGAT 57.094 32.000 0.00 0.00 0.00 3.73
2450 5143 7.722795 TTGAGTTTGTATTTCAGATTGACGA 57.277 32.000 0.00 0.00 0.00 4.20
2451 5144 7.855409 TGTTTGAGTTTGTATTTCAGATTGACG 59.145 33.333 0.00 0.00 0.00 4.35
2452 5145 9.515020 TTGTTTGAGTTTGTATTTCAGATTGAC 57.485 29.630 0.00 0.00 0.00 3.18
2455 5148 9.868277 TGTTTGTTTGAGTTTGTATTTCAGATT 57.132 25.926 0.00 0.00 0.00 2.40
2456 5149 9.301153 GTGTTTGTTTGAGTTTGTATTTCAGAT 57.699 29.630 0.00 0.00 0.00 2.90
2457 5150 7.483375 CGTGTTTGTTTGAGTTTGTATTTCAGA 59.517 33.333 0.00 0.00 0.00 3.27
2458 5151 7.600039 CGTGTTTGTTTGAGTTTGTATTTCAG 58.400 34.615 0.00 0.00 0.00 3.02
2459 5152 6.034044 GCGTGTTTGTTTGAGTTTGTATTTCA 59.966 34.615 0.00 0.00 0.00 2.69
2460 5153 6.252655 AGCGTGTTTGTTTGAGTTTGTATTTC 59.747 34.615 0.00 0.00 0.00 2.17
2461 5154 6.096695 AGCGTGTTTGTTTGAGTTTGTATTT 58.903 32.000 0.00 0.00 0.00 1.40
2462 5155 5.646606 AGCGTGTTTGTTTGAGTTTGTATT 58.353 33.333 0.00 0.00 0.00 1.89
2463 5156 5.243426 AGCGTGTTTGTTTGAGTTTGTAT 57.757 34.783 0.00 0.00 0.00 2.29
2464 5157 4.688511 AGCGTGTTTGTTTGAGTTTGTA 57.311 36.364 0.00 0.00 0.00 2.41
2465 5158 3.569250 AGCGTGTTTGTTTGAGTTTGT 57.431 38.095 0.00 0.00 0.00 2.83
2466 5159 3.303229 GGAAGCGTGTTTGTTTGAGTTTG 59.697 43.478 0.00 0.00 0.00 2.93
2467 5160 3.192633 AGGAAGCGTGTTTGTTTGAGTTT 59.807 39.130 0.00 0.00 0.00 2.66
2468 5161 2.752903 AGGAAGCGTGTTTGTTTGAGTT 59.247 40.909 0.00 0.00 0.00 3.01
2469 5162 2.365582 AGGAAGCGTGTTTGTTTGAGT 58.634 42.857 0.00 0.00 0.00 3.41
2470 5163 3.420839 AAGGAAGCGTGTTTGTTTGAG 57.579 42.857 0.00 0.00 0.00 3.02
2471 5164 4.966965 TTAAGGAAGCGTGTTTGTTTGA 57.033 36.364 0.00 0.00 0.00 2.69
2472 5165 6.129194 GCTTATTAAGGAAGCGTGTTTGTTTG 60.129 38.462 8.64 0.00 39.93 2.93
2473 5166 5.918576 GCTTATTAAGGAAGCGTGTTTGTTT 59.081 36.000 8.64 0.00 39.93 2.83
2474 5167 5.458015 GCTTATTAAGGAAGCGTGTTTGTT 58.542 37.500 8.64 0.00 39.93 2.83
2475 5168 5.043189 GCTTATTAAGGAAGCGTGTTTGT 57.957 39.130 8.64 0.00 39.93 2.83
2483 5176 2.803386 GAGAGGCGCTTATTAAGGAAGC 59.197 50.000 7.64 12.71 44.80 3.86
2484 5177 4.054671 CAGAGAGGCGCTTATTAAGGAAG 58.945 47.826 7.64 0.00 0.00 3.46
2485 5178 3.181465 CCAGAGAGGCGCTTATTAAGGAA 60.181 47.826 7.64 0.00 0.00 3.36
2486 5179 2.365617 CCAGAGAGGCGCTTATTAAGGA 59.634 50.000 7.64 0.00 0.00 3.36
2487 5180 2.760374 CCAGAGAGGCGCTTATTAAGG 58.240 52.381 7.64 0.00 0.00 2.69
2499 5192 0.250513 GGGTACAAGTGCCAGAGAGG 59.749 60.000 9.53 0.00 37.05 3.69
2500 5193 0.976641 TGGGTACAAGTGCCAGAGAG 59.023 55.000 9.53 0.00 37.05 3.20
2501 5194 1.278985 CATGGGTACAAGTGCCAGAGA 59.721 52.381 9.53 0.00 37.05 3.10
2502 5195 1.278985 TCATGGGTACAAGTGCCAGAG 59.721 52.381 9.53 0.00 37.05 3.35
2503 5196 1.357137 TCATGGGTACAAGTGCCAGA 58.643 50.000 9.53 1.68 37.05 3.86
2504 5197 2.198827 TTCATGGGTACAAGTGCCAG 57.801 50.000 9.53 0.00 37.05 4.85
2505 5198 2.666272 TTTCATGGGTACAAGTGCCA 57.334 45.000 9.53 0.00 37.05 4.92
2506 5199 4.013728 TGTATTTCATGGGTACAAGTGCC 58.986 43.478 0.00 0.00 34.35 5.01
2507 5200 5.637006 TTGTATTTCATGGGTACAAGTGC 57.363 39.130 11.74 0.00 34.44 4.40
2508 5201 6.083630 CGTTTGTATTTCATGGGTACAAGTG 58.916 40.000 13.95 9.59 38.92 3.16
2509 5202 5.335348 GCGTTTGTATTTCATGGGTACAAGT 60.335 40.000 13.95 0.00 38.92 3.16
2510 5203 5.092781 GCGTTTGTATTTCATGGGTACAAG 58.907 41.667 13.95 8.41 38.92 3.16
2511 5204 4.082679 GGCGTTTGTATTTCATGGGTACAA 60.083 41.667 11.74 11.74 36.76 2.41
2512 5205 3.440872 GGCGTTTGTATTTCATGGGTACA 59.559 43.478 0.00 0.00 0.00 2.90
2513 5206 3.440872 TGGCGTTTGTATTTCATGGGTAC 59.559 43.478 0.00 0.00 0.00 3.34
2514 5207 3.687125 TGGCGTTTGTATTTCATGGGTA 58.313 40.909 0.00 0.00 0.00 3.69
2515 5208 2.520069 TGGCGTTTGTATTTCATGGGT 58.480 42.857 0.00 0.00 0.00 4.51
2516 5209 3.799281 ATGGCGTTTGTATTTCATGGG 57.201 42.857 0.00 0.00 0.00 4.00
2517 5210 5.453281 CAAATGGCGTTTGTATTTCATGG 57.547 39.130 21.29 0.00 41.80 3.66
2532 5225 3.338249 TGTGAGTAGAGAAGCAAATGGC 58.662 45.455 0.00 0.00 45.30 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.