Multiple sequence alignment - TraesCS6A01G413000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G413000 chr6A 100.000 2243 0 0 1 2243 614449336 614447094 0.000000e+00 4143.0
1 TraesCS6A01G413000 chr6A 85.219 663 56 21 1045 1687 614460227 614459587 0.000000e+00 643.0
2 TraesCS6A01G413000 chr6A 80.628 764 96 27 1196 1939 614478657 614477926 5.450000e-151 544.0
3 TraesCS6A01G413000 chr6A 78.868 530 70 25 246 766 614461152 614460656 9.990000e-84 320.0
4 TraesCS6A01G413000 chr6A 81.622 370 47 12 259 621 614479428 614479073 1.010000e-73 287.0
5 TraesCS6A01G413000 chr6A 84.545 220 30 2 1992 2210 614459292 614459076 4.850000e-52 215.0
6 TraesCS6A01G413000 chr6A 83.439 157 14 8 320 468 614489910 614489758 3.890000e-28 135.0
7 TraesCS6A01G413000 chr6D 82.783 848 111 21 1376 2210 469322231 469321406 0.000000e+00 725.0
8 TraesCS6A01G413000 chr6D 92.665 409 27 2 1049 1455 469252633 469252226 8.920000e-164 586.0
9 TraesCS6A01G413000 chr6D 82.143 616 63 22 181 777 469253545 469252958 3.350000e-133 484.0
10 TraesCS6A01G413000 chr6D 85.795 352 44 4 430 777 469322889 469322540 3.520000e-98 368.0
11 TraesCS6A01G413000 chr6D 83.333 186 21 9 1745 1922 469251993 469251810 1.780000e-36 163.0
12 TraesCS6A01G413000 chr6D 83.851 161 10 5 181 341 469341319 469341175 3.000000e-29 139.0
13 TraesCS6A01G413000 chr6D 81.955 133 16 2 51 183 469341483 469341359 3.050000e-19 106.0
14 TraesCS6A01G413000 chr6D 90.698 43 2 2 848 890 469322355 469322315 3.110000e-04 56.5
15 TraesCS6A01G413000 chr6D 100.000 29 0 0 344 372 469322947 469322919 1.000000e-03 54.7
16 TraesCS6A01G413000 chr6B 96.454 141 5 0 992 1132 715603138 715602998 1.340000e-57 233.0
17 TraesCS6A01G413000 chr6B 94.444 108 6 0 1033 1140 715605734 715605627 1.380000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G413000 chr6A 614447094 614449336 2242 True 4143.000000 4143 100.000000 1 2243 1 chr6A.!!$R1 2242
1 TraesCS6A01G413000 chr6A 614477926 614479428 1502 True 415.500000 544 81.125000 259 1939 2 chr6A.!!$R4 1680
2 TraesCS6A01G413000 chr6A 614459076 614461152 2076 True 392.666667 643 82.877333 246 2210 3 chr6A.!!$R3 1964
3 TraesCS6A01G413000 chr6D 469251810 469253545 1735 True 411.000000 586 86.047000 181 1922 3 chr6D.!!$R1 1741
4 TraesCS6A01G413000 chr6D 469321406 469322947 1541 True 301.050000 725 89.819000 344 2210 4 chr6D.!!$R2 1866

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.031857 TTTTTGCATGTCCGTGCCTG 59.968 50.0 8.89 0.0 44.43 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1940 2328 0.458543 CTGAAGGATCACCACGACCG 60.459 60.0 0.0 0.0 38.94 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.741448 GAAGTAATTAAGCACGTTTTTGCA 57.259 33.333 0.00 0.00 45.62 4.08
24 25 7.333288 GAAGTAATTAAGCACGTTTTTGCAT 57.667 32.000 0.00 0.00 45.62 3.96
25 26 6.689178 AGTAATTAAGCACGTTTTTGCATG 57.311 33.333 0.00 0.00 45.62 4.06
26 27 6.212955 AGTAATTAAGCACGTTTTTGCATGT 58.787 32.000 0.00 0.00 45.62 3.21
27 28 5.574815 AATTAAGCACGTTTTTGCATGTC 57.425 34.783 0.00 0.00 45.62 3.06
28 29 1.851658 AAGCACGTTTTTGCATGTCC 58.148 45.000 0.00 0.00 45.62 4.02
29 30 0.317770 AGCACGTTTTTGCATGTCCG 60.318 50.000 0.00 0.00 45.62 4.79
30 31 0.593773 GCACGTTTTTGCATGTCCGT 60.594 50.000 0.00 0.00 42.49 4.69
31 32 1.119635 CACGTTTTTGCATGTCCGTG 58.880 50.000 12.81 12.81 39.51 4.94
32 33 0.593773 ACGTTTTTGCATGTCCGTGC 60.594 50.000 4.53 4.53 45.25 5.34
33 34 1.274798 CGTTTTTGCATGTCCGTGCC 61.275 55.000 8.89 0.00 44.43 5.01
34 35 0.031994 GTTTTTGCATGTCCGTGCCT 59.968 50.000 8.89 0.00 44.43 4.75
35 36 0.031857 TTTTTGCATGTCCGTGCCTG 59.968 50.000 8.89 0.00 44.43 4.85
36 37 0.821301 TTTTGCATGTCCGTGCCTGA 60.821 50.000 8.89 0.00 44.43 3.86
37 38 0.821301 TTTGCATGTCCGTGCCTGAA 60.821 50.000 8.89 0.00 44.43 3.02
38 39 0.821301 TTGCATGTCCGTGCCTGAAA 60.821 50.000 8.89 0.00 44.43 2.69
39 40 1.210155 GCATGTCCGTGCCTGAAAC 59.790 57.895 0.00 0.00 39.18 2.78
40 41 1.497278 CATGTCCGTGCCTGAAACG 59.503 57.895 0.00 0.00 40.70 3.60
48 49 4.272100 GCCTGAAACGGCGAGTTA 57.728 55.556 16.62 0.00 43.37 2.24
49 50 2.079049 GCCTGAAACGGCGAGTTAG 58.921 57.895 16.62 6.64 43.37 2.34
50 51 1.359459 GCCTGAAACGGCGAGTTAGG 61.359 60.000 16.62 16.70 43.37 2.69
51 52 1.359459 CCTGAAACGGCGAGTTAGGC 61.359 60.000 16.62 0.00 43.37 3.93
52 53 1.359459 CTGAAACGGCGAGTTAGGCC 61.359 60.000 16.62 0.00 43.37 5.19
61 62 2.561569 GCGAGTTAGGCCATGTAATGT 58.438 47.619 5.01 0.00 44.81 2.71
62 63 2.287915 GCGAGTTAGGCCATGTAATGTG 59.712 50.000 5.01 0.00 44.81 3.21
63 64 3.531538 CGAGTTAGGCCATGTAATGTGT 58.468 45.455 5.01 0.00 44.81 3.72
64 65 4.689071 CGAGTTAGGCCATGTAATGTGTA 58.311 43.478 5.01 0.00 44.81 2.90
65 66 4.745125 CGAGTTAGGCCATGTAATGTGTAG 59.255 45.833 5.01 0.00 44.81 2.74
66 67 4.451900 AGTTAGGCCATGTAATGTGTAGC 58.548 43.478 5.01 0.00 44.81 3.58
67 68 4.080582 AGTTAGGCCATGTAATGTGTAGCA 60.081 41.667 5.01 0.00 44.81 3.49
68 69 2.643551 AGGCCATGTAATGTGTAGCAC 58.356 47.619 5.01 0.00 44.81 4.40
69 70 1.330521 GGCCATGTAATGTGTAGCACG 59.669 52.381 0.00 0.00 44.81 5.34
70 71 2.006888 GCCATGTAATGTGTAGCACGT 58.993 47.619 0.00 0.00 44.81 4.49
71 72 2.030457 GCCATGTAATGTGTAGCACGTC 59.970 50.000 0.00 0.00 44.81 4.34
72 73 2.607635 CCATGTAATGTGTAGCACGTCC 59.392 50.000 0.00 0.00 44.81 4.79
73 74 3.258228 CATGTAATGTGTAGCACGTCCA 58.742 45.455 0.00 0.00 40.20 4.02
74 75 2.679450 TGTAATGTGTAGCACGTCCAC 58.321 47.619 0.00 0.00 37.14 4.02
75 76 1.652124 GTAATGTGTAGCACGTCCACG 59.348 52.381 0.00 0.00 46.33 4.94
85 86 3.636458 CGTCCACGTGCATGTGAA 58.364 55.556 35.20 17.84 42.55 3.18
86 87 2.161831 CGTCCACGTGCATGTGAAT 58.838 52.632 35.20 0.21 42.55 2.57
87 88 1.355005 CGTCCACGTGCATGTGAATA 58.645 50.000 35.20 19.56 42.55 1.75
88 89 1.933181 CGTCCACGTGCATGTGAATAT 59.067 47.619 35.20 0.00 42.55 1.28
89 90 3.120041 CGTCCACGTGCATGTGAATATA 58.880 45.455 35.20 15.10 42.55 0.86
90 91 3.740832 CGTCCACGTGCATGTGAATATAT 59.259 43.478 35.20 0.00 42.55 0.86
91 92 4.376311 CGTCCACGTGCATGTGAATATATG 60.376 45.833 35.20 19.03 42.55 1.78
92 93 4.749598 GTCCACGTGCATGTGAATATATGA 59.250 41.667 35.20 20.80 42.55 2.15
93 94 5.409520 GTCCACGTGCATGTGAATATATGAT 59.590 40.000 35.20 0.00 42.55 2.45
94 95 5.997129 TCCACGTGCATGTGAATATATGATT 59.003 36.000 35.20 0.00 42.55 2.57
95 96 6.073112 TCCACGTGCATGTGAATATATGATTG 60.073 38.462 35.20 16.61 42.55 2.67
96 97 6.073112 CCACGTGCATGTGAATATATGATTGA 60.073 38.462 35.20 0.00 42.55 2.57
97 98 6.793680 CACGTGCATGTGAATATATGATTGAC 59.206 38.462 31.17 0.00 42.55 3.18
98 99 6.011277 CGTGCATGTGAATATATGATTGACG 58.989 40.000 0.00 0.00 0.00 4.35
99 100 5.791974 GTGCATGTGAATATATGATTGACGC 59.208 40.000 0.00 0.00 0.00 5.19
100 101 5.469421 TGCATGTGAATATATGATTGACGCA 59.531 36.000 0.00 0.00 0.00 5.24
101 102 6.019762 GCATGTGAATATATGATTGACGCAG 58.980 40.000 0.00 0.00 0.00 5.18
102 103 6.128472 GCATGTGAATATATGATTGACGCAGA 60.128 38.462 0.00 0.00 0.00 4.26
103 104 7.453838 CATGTGAATATATGATTGACGCAGAG 58.546 38.462 0.00 0.00 0.00 3.35
104 105 5.928264 TGTGAATATATGATTGACGCAGAGG 59.072 40.000 0.00 0.00 0.00 3.69
105 106 6.159293 GTGAATATATGATTGACGCAGAGGA 58.841 40.000 0.00 0.00 0.00 3.71
106 107 6.309980 GTGAATATATGATTGACGCAGAGGAG 59.690 42.308 0.00 0.00 0.00 3.69
107 108 5.991933 ATATATGATTGACGCAGAGGAGT 57.008 39.130 0.00 0.00 0.00 3.85
108 109 2.306341 ATGATTGACGCAGAGGAGTG 57.694 50.000 0.00 0.00 0.00 3.51
109 110 0.247460 TGATTGACGCAGAGGAGTGG 59.753 55.000 0.00 0.00 0.00 4.00
110 111 1.078848 ATTGACGCAGAGGAGTGGC 60.079 57.895 0.00 0.00 0.00 5.01
111 112 2.527951 ATTGACGCAGAGGAGTGGCC 62.528 60.000 0.00 0.00 0.00 5.36
112 113 4.803426 GACGCAGAGGAGTGGCCG 62.803 72.222 0.00 0.00 43.43 6.13
114 115 4.504916 CGCAGAGGAGTGGCCGAG 62.505 72.222 0.00 0.00 43.43 4.63
115 116 4.154347 GCAGAGGAGTGGCCGAGG 62.154 72.222 0.00 0.00 43.43 4.63
116 117 2.681778 CAGAGGAGTGGCCGAGGT 60.682 66.667 0.00 0.00 43.43 3.85
117 118 1.379977 CAGAGGAGTGGCCGAGGTA 60.380 63.158 0.00 0.00 43.43 3.08
118 119 1.076632 AGAGGAGTGGCCGAGGTAG 60.077 63.158 0.00 0.00 43.43 3.18
119 120 1.076923 GAGGAGTGGCCGAGGTAGA 60.077 63.158 0.00 0.00 43.43 2.59
120 121 0.683504 GAGGAGTGGCCGAGGTAGAA 60.684 60.000 0.00 0.00 43.43 2.10
121 122 0.684805 AGGAGTGGCCGAGGTAGAAG 60.685 60.000 0.00 0.00 43.43 2.85
122 123 0.683504 GGAGTGGCCGAGGTAGAAGA 60.684 60.000 0.00 0.00 0.00 2.87
123 124 0.741915 GAGTGGCCGAGGTAGAAGAG 59.258 60.000 0.00 0.00 0.00 2.85
124 125 0.331954 AGTGGCCGAGGTAGAAGAGA 59.668 55.000 0.00 0.00 0.00 3.10
125 126 0.456628 GTGGCCGAGGTAGAAGAGAC 59.543 60.000 0.00 0.00 0.00 3.36
126 127 1.030488 TGGCCGAGGTAGAAGAGACG 61.030 60.000 0.00 0.00 0.00 4.18
127 128 1.726533 GGCCGAGGTAGAAGAGACGG 61.727 65.000 0.00 0.00 42.63 4.79
128 129 1.031029 GCCGAGGTAGAAGAGACGGT 61.031 60.000 0.00 0.00 41.92 4.83
129 130 0.733729 CCGAGGTAGAAGAGACGGTG 59.266 60.000 0.00 0.00 36.38 4.94
130 131 1.451067 CGAGGTAGAAGAGACGGTGT 58.549 55.000 0.00 0.00 0.00 4.16
131 132 1.130749 CGAGGTAGAAGAGACGGTGTG 59.869 57.143 0.00 0.00 0.00 3.82
132 133 0.889306 AGGTAGAAGAGACGGTGTGC 59.111 55.000 0.00 0.00 0.00 4.57
133 134 0.456312 GGTAGAAGAGACGGTGTGCG 60.456 60.000 0.00 0.00 0.00 5.34
134 135 0.240411 GTAGAAGAGACGGTGTGCGT 59.760 55.000 0.00 0.00 0.00 5.24
135 136 1.466167 GTAGAAGAGACGGTGTGCGTA 59.534 52.381 0.00 0.00 0.00 4.42
136 137 0.240411 AGAAGAGACGGTGTGCGTAC 59.760 55.000 0.00 0.00 0.00 3.67
137 138 1.063951 GAAGAGACGGTGTGCGTACG 61.064 60.000 11.84 11.84 0.00 3.67
138 139 1.789078 AAGAGACGGTGTGCGTACGT 61.789 55.000 17.90 0.00 44.35 3.57
139 140 2.050714 AGACGGTGTGCGTACGTG 60.051 61.111 17.90 2.97 41.40 4.49
140 141 3.101428 GACGGTGTGCGTACGTGG 61.101 66.667 17.90 2.78 41.40 4.94
147 148 2.505337 TGCGTACGTGGCACGATC 60.505 61.111 42.65 30.46 46.05 3.69
148 149 3.604202 GCGTACGTGGCACGATCG 61.604 66.667 42.65 38.08 46.05 3.69
149 150 2.947621 CGTACGTGGCACGATCGG 60.948 66.667 42.65 24.61 46.05 4.18
150 151 2.486504 GTACGTGGCACGATCGGA 59.513 61.111 42.65 20.41 46.05 4.55
151 152 1.870901 GTACGTGGCACGATCGGAC 60.871 63.158 42.65 26.18 46.05 4.79
152 153 2.334181 TACGTGGCACGATCGGACA 61.334 57.895 42.65 13.89 46.05 4.02
153 154 1.864725 TACGTGGCACGATCGGACAA 61.865 55.000 42.65 15.93 46.05 3.18
154 155 2.444624 CGTGGCACGATCGGACAAG 61.445 63.158 34.85 14.57 46.05 3.16
155 156 1.080093 GTGGCACGATCGGACAAGA 60.080 57.895 20.98 0.00 0.00 3.02
156 157 1.078759 GTGGCACGATCGGACAAGAG 61.079 60.000 20.98 1.25 0.00 2.85
157 158 1.519455 GGCACGATCGGACAAGAGG 60.519 63.158 20.98 0.00 0.00 3.69
158 159 1.511305 GCACGATCGGACAAGAGGA 59.489 57.895 20.98 0.00 0.00 3.71
159 160 0.526524 GCACGATCGGACAAGAGGAG 60.527 60.000 20.98 0.00 0.00 3.69
160 161 1.095600 CACGATCGGACAAGAGGAGA 58.904 55.000 20.98 0.00 0.00 3.71
161 162 1.096416 ACGATCGGACAAGAGGAGAC 58.904 55.000 20.98 0.00 0.00 3.36
162 163 1.095600 CGATCGGACAAGAGGAGACA 58.904 55.000 7.38 0.00 0.00 3.41
163 164 1.472878 CGATCGGACAAGAGGAGACAA 59.527 52.381 7.38 0.00 0.00 3.18
164 165 2.478709 CGATCGGACAAGAGGAGACAAG 60.479 54.545 7.38 0.00 0.00 3.16
165 166 2.287977 TCGGACAAGAGGAGACAAGA 57.712 50.000 0.00 0.00 0.00 3.02
166 167 2.808919 TCGGACAAGAGGAGACAAGAT 58.191 47.619 0.00 0.00 0.00 2.40
167 168 3.964411 TCGGACAAGAGGAGACAAGATA 58.036 45.455 0.00 0.00 0.00 1.98
168 169 3.695060 TCGGACAAGAGGAGACAAGATAC 59.305 47.826 0.00 0.00 0.00 2.24
169 170 3.697045 CGGACAAGAGGAGACAAGATACT 59.303 47.826 0.00 0.00 0.00 2.12
170 171 4.158764 CGGACAAGAGGAGACAAGATACTT 59.841 45.833 0.00 0.00 0.00 2.24
171 172 5.415221 GGACAAGAGGAGACAAGATACTTG 58.585 45.833 9.51 9.51 39.02 3.16
172 173 4.826556 ACAAGAGGAGACAAGATACTTGC 58.173 43.478 10.78 5.05 37.38 4.01
173 174 4.530161 ACAAGAGGAGACAAGATACTTGCT 59.470 41.667 10.78 9.03 37.38 3.91
174 175 4.734398 AGAGGAGACAAGATACTTGCTG 57.266 45.455 10.78 0.00 0.00 4.41
175 176 4.348486 AGAGGAGACAAGATACTTGCTGA 58.652 43.478 10.78 0.00 0.00 4.26
176 177 4.402155 AGAGGAGACAAGATACTTGCTGAG 59.598 45.833 10.78 0.00 0.00 3.35
177 178 4.348486 AGGAGACAAGATACTTGCTGAGA 58.652 43.478 10.78 0.00 0.00 3.27
178 179 4.774726 AGGAGACAAGATACTTGCTGAGAA 59.225 41.667 10.78 0.00 0.00 2.87
179 180 5.247110 AGGAGACAAGATACTTGCTGAGAAA 59.753 40.000 10.78 0.00 0.00 2.52
208 209 4.954118 AGGGCGACTGGTGACCCA 62.954 66.667 0.00 0.00 45.45 4.51
209 210 3.948719 GGGCGACTGGTGACCCAA 61.949 66.667 0.00 0.00 41.27 4.12
213 214 0.889186 GCGACTGGTGACCCAACAAT 60.889 55.000 0.00 0.00 41.27 2.71
225 226 1.463674 CCAACAATCAGCACCTACCC 58.536 55.000 0.00 0.00 0.00 3.69
226 227 1.086696 CAACAATCAGCACCTACCCG 58.913 55.000 0.00 0.00 0.00 5.28
235 236 1.436336 CACCTACCCGGAAGCTACG 59.564 63.158 0.73 3.92 36.31 3.51
236 237 2.416260 CCTACCCGGAAGCTACGC 59.584 66.667 0.73 0.00 33.16 4.42
271 272 2.340328 GGGTGGCCACAAATCGTCC 61.340 63.158 35.78 22.10 0.00 4.79
288 289 3.390017 CATCGATCGCGTGCTCCG 61.390 66.667 11.09 4.04 38.98 4.63
289 290 4.630785 ATCGATCGCGTGCTCCGG 62.631 66.667 11.09 0.00 38.98 5.14
291 292 4.246206 CGATCGCGTGCTCCGGTA 62.246 66.667 5.77 0.00 36.94 4.02
292 293 2.654404 GATCGCGTGCTCCGGTAC 60.654 66.667 5.77 0.00 36.94 3.34
377 394 2.069273 CTCTGTTCTGCTTAACCCACG 58.931 52.381 0.26 0.00 0.00 4.94
420 461 2.567497 GCAGCAGCAGGCCAAGAAA 61.567 57.895 5.01 0.00 46.50 2.52
422 463 1.905354 AGCAGCAGGCCAAGAAACC 60.905 57.895 5.01 0.00 46.50 3.27
434 477 3.807209 GCCAAGAAACCTCTCTGCAACTA 60.807 47.826 0.00 0.00 31.57 2.24
435 478 3.999663 CCAAGAAACCTCTCTGCAACTAG 59.000 47.826 0.00 0.00 0.00 2.57
457 500 3.111853 ACTGATCACGCAAGAAGACAA 57.888 42.857 0.00 0.00 43.62 3.18
463 506 0.107410 ACGCAAGAAGACAACCACCA 60.107 50.000 0.00 0.00 43.62 4.17
464 507 0.588252 CGCAAGAAGACAACCACCAG 59.412 55.000 0.00 0.00 43.02 4.00
572 632 3.386592 GCACCTGCAGAGACTCCT 58.613 61.111 17.39 0.00 41.59 3.69
637 697 4.415332 ACGACTACGCTGGCACCG 62.415 66.667 0.00 0.00 43.96 4.94
648 708 4.704833 GGCACCGGCAGCAGAAGA 62.705 66.667 19.65 0.00 43.71 2.87
654 714 4.400961 GGCAGCAGAAGAGGCGGT 62.401 66.667 0.00 0.00 36.08 5.68
655 715 2.817396 GCAGCAGAAGAGGCGGTC 60.817 66.667 0.00 0.00 36.08 4.79
730 793 2.268076 GCCACCGTTGACATTGCCT 61.268 57.895 0.00 0.00 0.00 4.75
731 794 1.875963 CCACCGTTGACATTGCCTC 59.124 57.895 0.00 0.00 0.00 4.70
737 800 1.872952 CGTTGACATTGCCTCAAGTCA 59.127 47.619 0.00 0.00 39.06 3.41
747 810 1.901538 CCTCAAGTCAGTCGTCGATG 58.098 55.000 0.00 0.00 0.00 3.84
768 831 3.010027 TGGGCTGGATCAATTAGACACAA 59.990 43.478 0.00 0.00 0.00 3.33
777 840 9.295825 TGGATCAATTAGACACAATGTTTAGTT 57.704 29.630 0.00 0.00 0.00 2.24
783 903 9.950680 AATTAGACACAATGTTTAGTTCAGTTG 57.049 29.630 0.00 0.00 0.00 3.16
798 923 4.388080 TTGATGCGTGCGTGCTGC 62.388 61.111 0.00 0.00 46.70 5.25
810 935 1.939934 GCGTGCTGCAATTAGTCCATA 59.060 47.619 2.77 0.00 45.45 2.74
819 950 6.860023 GCTGCAATTAGTCCATACATGAATTC 59.140 38.462 0.00 0.00 0.00 2.17
843 974 3.439825 TGATGCGAGCTGCTTAATTTGAA 59.560 39.130 2.53 0.00 46.63 2.69
897 1094 3.450578 CTCTGCTCTCTGAATCTGAAGC 58.549 50.000 13.16 13.16 0.00 3.86
898 1095 2.168106 TCTGCTCTCTGAATCTGAAGCC 59.832 50.000 15.55 0.49 0.00 4.35
899 1096 2.168936 CTGCTCTCTGAATCTGAAGCCT 59.831 50.000 15.55 0.00 0.00 4.58
900 1097 2.168106 TGCTCTCTGAATCTGAAGCCTC 59.832 50.000 15.55 0.00 0.00 4.70
943 1166 2.419324 ACTCGTAGTCCGTCTTCACATC 59.581 50.000 0.00 0.00 37.94 3.06
945 1168 1.202268 CGTAGTCCGTCTTCACATCCC 60.202 57.143 0.00 0.00 0.00 3.85
958 1181 1.444212 CATCCCTTTTGCGCCAACG 60.444 57.895 4.18 0.00 44.07 4.10
971 1194 2.032634 CCAACGTGTCCATCCCGTG 61.033 63.158 0.00 0.00 34.62 4.94
978 1201 0.251916 TGTCCATCCCGTGTTCCATC 59.748 55.000 0.00 0.00 0.00 3.51
980 1203 0.620410 TCCATCCCGTGTTCCATCCT 60.620 55.000 0.00 0.00 0.00 3.24
981 1204 0.464373 CCATCCCGTGTTCCATCCTG 60.464 60.000 0.00 0.00 0.00 3.86
982 1205 0.464373 CATCCCGTGTTCCATCCTGG 60.464 60.000 0.00 0.00 39.43 4.45
983 1206 0.620410 ATCCCGTGTTCCATCCTGGA 60.620 55.000 0.00 0.00 46.61 3.86
1266 1539 2.743752 CCACAGGATCACGCGCTTG 61.744 63.158 5.73 7.71 0.00 4.01
1326 1599 8.915036 TCCAGATACTAGTGGTAATTTCTTCTC 58.085 37.037 5.39 0.00 35.14 2.87
1348 1622 0.530744 GCAAAAGGGGGACGATTTCC 59.469 55.000 0.00 0.00 45.00 3.13
1372 1646 2.591571 TCTCAGCTGGATTGTGATCG 57.408 50.000 15.13 0.00 32.84 3.69
1374 1648 2.159184 TCTCAGCTGGATTGTGATCGAC 60.159 50.000 15.13 0.00 32.84 4.20
1380 1654 3.553511 GCTGGATTGTGATCGACTACTTG 59.446 47.826 0.00 0.00 32.84 3.16
1435 1716 4.666237 CGATAGATTGATGATAGCGCAGA 58.334 43.478 11.47 0.00 39.76 4.26
1487 1773 1.973281 CACCACCACCAGCATGTCC 60.973 63.158 0.00 0.00 0.00 4.02
1488 1774 2.156098 ACCACCACCAGCATGTCCT 61.156 57.895 0.00 0.00 0.00 3.85
1565 1852 7.199167 TCTGTCCCTCTTCATATTTGATTGA 57.801 36.000 0.00 0.00 0.00 2.57
1599 1886 4.240175 CGGGAGGTAGATACTAGCAAAC 57.760 50.000 9.94 2.56 0.00 2.93
1687 1979 0.537188 GAAGCTCCGTGGATCAGGAA 59.463 55.000 0.00 0.00 35.90 3.36
1691 1983 1.373570 CTCCGTGGATCAGGAAAAGC 58.626 55.000 0.00 0.00 35.90 3.51
1729 2061 4.765339 GGTACCTGCATTTTGGTAGAAACT 59.235 41.667 4.06 0.00 39.22 2.66
1736 2068 5.809562 TGCATTTTGGTAGAAACTTTGTGTG 59.190 36.000 0.00 0.00 0.00 3.82
1802 2184 4.695455 CCATGGAAATATGTACGTGGATCC 59.305 45.833 10.66 4.20 41.44 3.36
1814 2196 1.404717 CGTGGATCCTCTTCAGTGTGG 60.405 57.143 14.23 0.00 0.00 4.17
1837 2219 2.875094 ATCAGCTATGGCAAGGATCC 57.125 50.000 2.48 2.48 41.70 3.36
1869 2251 3.112263 ACGGGAGGATTATGGTTCAGAA 58.888 45.455 0.00 0.00 0.00 3.02
1877 2259 6.131961 AGGATTATGGTTCAGAAAATGGAGG 58.868 40.000 0.00 0.00 0.00 4.30
1880 2262 7.725844 GGATTATGGTTCAGAAAATGGAGGTAT 59.274 37.037 0.00 0.00 0.00 2.73
1890 2272 6.423302 CAGAAAATGGAGGTATTCAGATCTCG 59.577 42.308 0.00 0.00 0.00 4.04
1893 2275 2.091278 TGGAGGTATTCAGATCTCGGGT 60.091 50.000 0.00 0.00 0.00 5.28
1894 2276 2.297597 GGAGGTATTCAGATCTCGGGTG 59.702 54.545 0.00 0.00 0.00 4.61
1930 2318 5.709164 AGGGAATTTGTGAGAAACAGAGATG 59.291 40.000 0.00 0.00 40.74 2.90
1953 2341 2.509336 CCAGCGGTCGTGGTGATC 60.509 66.667 5.98 0.00 39.68 2.92
1954 2342 2.509336 CAGCGGTCGTGGTGATCC 60.509 66.667 0.00 0.00 39.68 3.36
1955 2343 2.680352 AGCGGTCGTGGTGATCCT 60.680 61.111 0.00 0.00 34.23 3.24
1956 2344 2.264794 GCGGTCGTGGTGATCCTT 59.735 61.111 0.00 0.00 34.23 3.36
1957 2345 1.810030 GCGGTCGTGGTGATCCTTC 60.810 63.158 0.00 0.00 34.23 3.46
1958 2346 1.589630 CGGTCGTGGTGATCCTTCA 59.410 57.895 0.00 0.00 34.23 3.02
1959 2347 0.458543 CGGTCGTGGTGATCCTTCAG 60.459 60.000 0.00 0.00 30.85 3.02
1960 2348 0.608640 GGTCGTGGTGATCCTTCAGT 59.391 55.000 0.00 0.00 30.85 3.41
1961 2349 1.822990 GGTCGTGGTGATCCTTCAGTA 59.177 52.381 0.00 0.00 30.85 2.74
1962 2350 2.431057 GGTCGTGGTGATCCTTCAGTAT 59.569 50.000 0.00 0.00 30.85 2.12
1963 2351 3.491104 GGTCGTGGTGATCCTTCAGTATC 60.491 52.174 0.00 0.00 30.85 2.24
1964 2352 3.381908 GTCGTGGTGATCCTTCAGTATCT 59.618 47.826 0.00 0.00 30.85 1.98
1965 2353 4.579340 GTCGTGGTGATCCTTCAGTATCTA 59.421 45.833 0.00 0.00 30.85 1.98
1966 2354 5.241949 GTCGTGGTGATCCTTCAGTATCTAT 59.758 44.000 0.00 0.00 30.85 1.98
1967 2355 5.241728 TCGTGGTGATCCTTCAGTATCTATG 59.758 44.000 0.00 0.00 30.85 2.23
1968 2356 5.010112 CGTGGTGATCCTTCAGTATCTATGT 59.990 44.000 0.00 0.00 30.85 2.29
1969 2357 6.219473 GTGGTGATCCTTCAGTATCTATGTG 58.781 44.000 0.00 0.00 30.85 3.21
1970 2358 5.899547 TGGTGATCCTTCAGTATCTATGTGT 59.100 40.000 0.00 0.00 30.85 3.72
1971 2359 6.384015 TGGTGATCCTTCAGTATCTATGTGTT 59.616 38.462 0.00 0.00 30.85 3.32
1972 2360 6.926272 GGTGATCCTTCAGTATCTATGTGTTC 59.074 42.308 0.00 0.00 30.85 3.18
1973 2361 6.926272 GTGATCCTTCAGTATCTATGTGTTCC 59.074 42.308 0.00 0.00 30.85 3.62
1974 2362 6.841229 TGATCCTTCAGTATCTATGTGTTCCT 59.159 38.462 0.00 0.00 0.00 3.36
1975 2363 7.345653 TGATCCTTCAGTATCTATGTGTTCCTT 59.654 37.037 0.00 0.00 0.00 3.36
1976 2364 6.878317 TCCTTCAGTATCTATGTGTTCCTTG 58.122 40.000 0.00 0.00 0.00 3.61
1977 2365 6.440647 TCCTTCAGTATCTATGTGTTCCTTGT 59.559 38.462 0.00 0.00 0.00 3.16
1978 2366 7.038302 TCCTTCAGTATCTATGTGTTCCTTGTT 60.038 37.037 0.00 0.00 0.00 2.83
1979 2367 7.607991 CCTTCAGTATCTATGTGTTCCTTGTTT 59.392 37.037 0.00 0.00 0.00 2.83
1980 2368 8.918202 TTCAGTATCTATGTGTTCCTTGTTTT 57.082 30.769 0.00 0.00 0.00 2.43
1981 2369 8.322906 TCAGTATCTATGTGTTCCTTGTTTTG 57.677 34.615 0.00 0.00 0.00 2.44
1982 2370 8.154203 TCAGTATCTATGTGTTCCTTGTTTTGA 58.846 33.333 0.00 0.00 0.00 2.69
1983 2371 8.783093 CAGTATCTATGTGTTCCTTGTTTTGAA 58.217 33.333 0.00 0.00 0.00 2.69
1984 2372 9.520515 AGTATCTATGTGTTCCTTGTTTTGAAT 57.479 29.630 0.00 0.00 0.00 2.57
1987 2375 8.870160 TCTATGTGTTCCTTGTTTTGAATTTG 57.130 30.769 0.00 0.00 0.00 2.32
1988 2376 8.474025 TCTATGTGTTCCTTGTTTTGAATTTGT 58.526 29.630 0.00 0.00 0.00 2.83
1989 2377 7.920160 ATGTGTTCCTTGTTTTGAATTTGTT 57.080 28.000 0.00 0.00 0.00 2.83
1990 2378 7.736447 TGTGTTCCTTGTTTTGAATTTGTTT 57.264 28.000 0.00 0.00 0.00 2.83
2026 2470 2.977772 TCTGTGGGTTTGGCAAAAAG 57.022 45.000 15.29 7.72 0.00 2.27
2027 2471 1.484240 TCTGTGGGTTTGGCAAAAAGG 59.516 47.619 15.29 2.71 0.00 3.11
2057 2503 6.311445 GCGTCATTATGTGCTTATATGCTAGT 59.689 38.462 11.48 1.15 0.00 2.57
2058 2504 7.488150 GCGTCATTATGTGCTTATATGCTAGTA 59.512 37.037 11.48 0.00 0.00 1.82
2059 2505 9.014533 CGTCATTATGTGCTTATATGCTAGTAG 57.985 37.037 11.48 0.00 0.00 2.57
2076 2522 4.521130 AGTAGCATTGTTCGACTCAAGA 57.479 40.909 7.97 0.00 0.00 3.02
2089 2535 7.654116 TGTTCGACTCAAGACAACATTTACATA 59.346 33.333 0.00 0.00 0.00 2.29
2092 2538 7.491372 TCGACTCAAGACAACATTTACATATCC 59.509 37.037 0.00 0.00 0.00 2.59
2124 2570 9.758651 ATCTCTTATTGTGCATTAATACACGTA 57.241 29.630 12.98 6.90 39.71 3.57
2125 2571 9.589111 TCTCTTATTGTGCATTAATACACGTAA 57.411 29.630 12.98 12.60 39.71 3.18
2146 2592 4.356405 ACCATGTCAGTCATTCACTTGA 57.644 40.909 0.00 0.00 34.09 3.02
2148 2594 5.319453 ACCATGTCAGTCATTCACTTGATT 58.681 37.500 0.00 0.00 34.09 2.57
2178 2624 3.514309 AGATTCTTGTACCGGCACTAGTT 59.486 43.478 14.75 5.43 0.00 2.24
2218 2664 5.731599 CTGATATTCTTCAGTCTGCCAAC 57.268 43.478 0.00 0.00 38.64 3.77
2219 2665 5.164620 TGATATTCTTCAGTCTGCCAACA 57.835 39.130 0.00 0.00 0.00 3.33
2220 2666 5.181009 TGATATTCTTCAGTCTGCCAACAG 58.819 41.667 0.00 0.00 45.95 3.16
2221 2667 3.498774 ATTCTTCAGTCTGCCAACAGT 57.501 42.857 0.00 0.00 44.77 3.55
2222 2668 3.281727 TTCTTCAGTCTGCCAACAGTT 57.718 42.857 0.00 0.00 44.77 3.16
2223 2669 4.415881 TTCTTCAGTCTGCCAACAGTTA 57.584 40.909 0.00 0.00 44.77 2.24
2224 2670 3.728845 TCTTCAGTCTGCCAACAGTTAC 58.271 45.455 0.00 0.00 44.77 2.50
2225 2671 2.543777 TCAGTCTGCCAACAGTTACC 57.456 50.000 0.00 0.00 44.77 2.85
2226 2672 1.765904 TCAGTCTGCCAACAGTTACCA 59.234 47.619 0.00 0.00 44.77 3.25
2227 2673 2.171659 TCAGTCTGCCAACAGTTACCAA 59.828 45.455 0.00 0.00 44.77 3.67
2228 2674 2.290641 CAGTCTGCCAACAGTTACCAAC 59.709 50.000 0.00 0.00 44.77 3.77
2229 2675 2.092646 AGTCTGCCAACAGTTACCAACA 60.093 45.455 0.00 0.00 44.77 3.33
2230 2676 2.290641 GTCTGCCAACAGTTACCAACAG 59.709 50.000 0.00 0.00 44.77 3.16
2231 2677 2.171659 TCTGCCAACAGTTACCAACAGA 59.828 45.455 0.00 0.00 44.77 3.41
2232 2678 3.149196 CTGCCAACAGTTACCAACAGAT 58.851 45.455 0.00 0.00 39.22 2.90
2233 2679 3.146066 TGCCAACAGTTACCAACAGATC 58.854 45.455 0.00 0.00 0.00 2.75
2234 2680 2.488153 GCCAACAGTTACCAACAGATCC 59.512 50.000 0.00 0.00 0.00 3.36
2235 2681 3.810743 GCCAACAGTTACCAACAGATCCT 60.811 47.826 0.00 0.00 0.00 3.24
2236 2682 3.753272 CCAACAGTTACCAACAGATCCTG 59.247 47.826 0.00 0.00 37.52 3.86
2237 2683 4.504864 CCAACAGTTACCAACAGATCCTGA 60.505 45.833 0.45 0.00 35.18 3.86
2238 2684 4.974645 ACAGTTACCAACAGATCCTGAA 57.025 40.909 0.45 0.00 35.18 3.02
2239 2685 5.304686 ACAGTTACCAACAGATCCTGAAA 57.695 39.130 0.45 0.00 35.18 2.69
2240 2686 5.063880 ACAGTTACCAACAGATCCTGAAAC 58.936 41.667 0.45 0.00 35.18 2.78
2241 2687 4.455877 CAGTTACCAACAGATCCTGAAACC 59.544 45.833 0.45 0.00 35.18 3.27
2242 2688 4.104102 AGTTACCAACAGATCCTGAAACCA 59.896 41.667 0.45 0.00 35.18 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.741448 TGCAAAAACGTGCTTAATTACTTC 57.259 33.333 0.00 0.00 45.17 3.01
1 2 6.699642 ACATGCAAAAACGTGCTTAATTACTT 59.300 30.769 0.00 0.00 45.17 2.24
2 3 6.212955 ACATGCAAAAACGTGCTTAATTACT 58.787 32.000 0.00 0.00 45.17 2.24
3 4 6.399564 GGACATGCAAAAACGTGCTTAATTAC 60.400 38.462 0.00 0.00 45.17 1.89
4 5 5.631512 GGACATGCAAAAACGTGCTTAATTA 59.368 36.000 0.00 0.00 45.17 1.40
5 6 4.447389 GGACATGCAAAAACGTGCTTAATT 59.553 37.500 0.00 0.00 45.17 1.40
6 7 3.987220 GGACATGCAAAAACGTGCTTAAT 59.013 39.130 0.00 0.00 45.17 1.40
7 8 3.376540 GGACATGCAAAAACGTGCTTAA 58.623 40.909 0.00 0.00 45.17 1.85
8 9 2.603412 CGGACATGCAAAAACGTGCTTA 60.603 45.455 0.00 0.00 45.17 3.09
9 10 1.851658 GGACATGCAAAAACGTGCTT 58.148 45.000 0.00 0.00 45.17 3.91
10 11 0.317770 CGGACATGCAAAAACGTGCT 60.318 50.000 0.00 0.00 45.17 4.40
11 12 0.593773 ACGGACATGCAAAAACGTGC 60.594 50.000 8.69 0.00 45.15 5.34
12 13 1.119635 CACGGACATGCAAAAACGTG 58.880 50.000 18.21 18.21 44.20 4.49
13 14 0.593773 GCACGGACATGCAAAAACGT 60.594 50.000 0.00 0.00 45.39 3.99
14 15 2.132402 GCACGGACATGCAAAAACG 58.868 52.632 0.00 0.00 45.39 3.60
21 22 1.210155 GTTTCAGGCACGGACATGC 59.790 57.895 0.00 0.00 45.34 4.06
22 23 1.497278 CGTTTCAGGCACGGACATG 59.503 57.895 0.00 0.00 33.86 3.21
23 24 3.966215 CGTTTCAGGCACGGACAT 58.034 55.556 0.00 0.00 33.86 3.06
32 33 1.359459 GCCTAACTCGCCGTTTCAGG 61.359 60.000 0.00 0.03 37.05 3.86
33 34 1.359459 GGCCTAACTCGCCGTTTCAG 61.359 60.000 0.00 0.00 36.47 3.02
34 35 1.375013 GGCCTAACTCGCCGTTTCA 60.375 57.895 0.00 0.00 36.47 2.69
35 36 3.482809 GGCCTAACTCGCCGTTTC 58.517 61.111 0.00 0.00 36.47 2.78
41 42 2.287915 CACATTACATGGCCTAACTCGC 59.712 50.000 3.32 0.00 33.60 5.03
42 43 3.531538 ACACATTACATGGCCTAACTCG 58.468 45.455 3.32 0.00 33.60 4.18
43 44 4.511826 GCTACACATTACATGGCCTAACTC 59.488 45.833 3.32 0.00 33.60 3.01
44 45 4.080582 TGCTACACATTACATGGCCTAACT 60.081 41.667 3.32 0.00 33.60 2.24
45 46 4.035208 GTGCTACACATTACATGGCCTAAC 59.965 45.833 3.32 0.00 34.08 2.34
46 47 4.196193 GTGCTACACATTACATGGCCTAA 58.804 43.478 3.32 0.00 34.08 2.69
47 48 3.739830 CGTGCTACACATTACATGGCCTA 60.740 47.826 3.32 0.00 33.40 3.93
48 49 2.643551 GTGCTACACATTACATGGCCT 58.356 47.619 3.32 0.00 34.08 5.19
49 50 1.330521 CGTGCTACACATTACATGGCC 59.669 52.381 0.00 0.00 33.40 5.36
50 51 2.006888 ACGTGCTACACATTACATGGC 58.993 47.619 0.00 0.00 33.40 4.40
51 52 2.607635 GGACGTGCTACACATTACATGG 59.392 50.000 0.00 0.00 33.40 3.66
52 53 3.062099 GTGGACGTGCTACACATTACATG 59.938 47.826 8.99 0.00 35.30 3.21
53 54 3.259064 GTGGACGTGCTACACATTACAT 58.741 45.455 8.99 0.00 35.30 2.29
54 55 2.679450 GTGGACGTGCTACACATTACA 58.321 47.619 8.99 0.00 35.30 2.41
55 56 1.652124 CGTGGACGTGCTACACATTAC 59.348 52.381 8.99 0.00 34.91 1.89
56 57 1.985334 CGTGGACGTGCTACACATTA 58.015 50.000 8.99 0.00 34.91 1.90
57 58 2.822306 CGTGGACGTGCTACACATT 58.178 52.632 8.99 0.00 34.91 2.71
58 59 4.571250 CGTGGACGTGCTACACAT 57.429 55.556 8.99 0.00 34.91 3.21
68 69 1.355005 TATTCACATGCACGTGGACG 58.645 50.000 18.88 10.18 46.33 4.79
69 70 4.749598 TCATATATTCACATGCACGTGGAC 59.250 41.667 18.88 1.42 37.50 4.02
70 71 4.954875 TCATATATTCACATGCACGTGGA 58.045 39.130 18.88 16.39 37.50 4.02
71 72 5.868043 ATCATATATTCACATGCACGTGG 57.132 39.130 18.88 2.89 37.50 4.94
72 73 6.793680 GTCAATCATATATTCACATGCACGTG 59.206 38.462 12.28 12.28 38.29 4.49
73 74 6.346838 CGTCAATCATATATTCACATGCACGT 60.347 38.462 0.00 0.00 0.00 4.49
74 75 6.011277 CGTCAATCATATATTCACATGCACG 58.989 40.000 0.00 0.00 0.00 5.34
75 76 5.791974 GCGTCAATCATATATTCACATGCAC 59.208 40.000 0.00 0.00 0.00 4.57
76 77 5.469421 TGCGTCAATCATATATTCACATGCA 59.531 36.000 0.00 0.00 0.00 3.96
77 78 5.930405 TGCGTCAATCATATATTCACATGC 58.070 37.500 0.00 0.00 0.00 4.06
78 79 7.355332 TCTGCGTCAATCATATATTCACATG 57.645 36.000 0.00 0.00 0.00 3.21
79 80 6.592994 CCTCTGCGTCAATCATATATTCACAT 59.407 38.462 0.00 0.00 0.00 3.21
80 81 5.928264 CCTCTGCGTCAATCATATATTCACA 59.072 40.000 0.00 0.00 0.00 3.58
81 82 6.159293 TCCTCTGCGTCAATCATATATTCAC 58.841 40.000 0.00 0.00 0.00 3.18
82 83 6.015095 ACTCCTCTGCGTCAATCATATATTCA 60.015 38.462 0.00 0.00 0.00 2.57
83 84 6.309980 CACTCCTCTGCGTCAATCATATATTC 59.690 42.308 0.00 0.00 0.00 1.75
84 85 6.162079 CACTCCTCTGCGTCAATCATATATT 58.838 40.000 0.00 0.00 0.00 1.28
85 86 5.337089 CCACTCCTCTGCGTCAATCATATAT 60.337 44.000 0.00 0.00 0.00 0.86
86 87 4.021981 CCACTCCTCTGCGTCAATCATATA 60.022 45.833 0.00 0.00 0.00 0.86
87 88 3.244009 CCACTCCTCTGCGTCAATCATAT 60.244 47.826 0.00 0.00 0.00 1.78
88 89 2.101415 CCACTCCTCTGCGTCAATCATA 59.899 50.000 0.00 0.00 0.00 2.15
89 90 1.134580 CCACTCCTCTGCGTCAATCAT 60.135 52.381 0.00 0.00 0.00 2.45
90 91 0.247460 CCACTCCTCTGCGTCAATCA 59.753 55.000 0.00 0.00 0.00 2.57
91 92 1.086634 GCCACTCCTCTGCGTCAATC 61.087 60.000 0.00 0.00 0.00 2.67
92 93 1.078848 GCCACTCCTCTGCGTCAAT 60.079 57.895 0.00 0.00 0.00 2.57
93 94 2.343758 GCCACTCCTCTGCGTCAA 59.656 61.111 0.00 0.00 0.00 3.18
94 95 3.695606 GGCCACTCCTCTGCGTCA 61.696 66.667 0.00 0.00 0.00 4.35
95 96 4.803426 CGGCCACTCCTCTGCGTC 62.803 72.222 2.24 0.00 0.00 5.19
97 98 4.504916 CTCGGCCACTCCTCTGCG 62.505 72.222 2.24 0.00 0.00 5.18
98 99 4.154347 CCTCGGCCACTCCTCTGC 62.154 72.222 2.24 0.00 0.00 4.26
99 100 1.379977 TACCTCGGCCACTCCTCTG 60.380 63.158 2.24 0.00 0.00 3.35
100 101 1.076632 CTACCTCGGCCACTCCTCT 60.077 63.158 2.24 0.00 0.00 3.69
101 102 0.683504 TTCTACCTCGGCCACTCCTC 60.684 60.000 2.24 0.00 0.00 3.71
102 103 0.684805 CTTCTACCTCGGCCACTCCT 60.685 60.000 2.24 0.00 0.00 3.69
103 104 0.683504 TCTTCTACCTCGGCCACTCC 60.684 60.000 2.24 0.00 0.00 3.85
104 105 0.741915 CTCTTCTACCTCGGCCACTC 59.258 60.000 2.24 0.00 0.00 3.51
105 106 0.331954 TCTCTTCTACCTCGGCCACT 59.668 55.000 2.24 0.00 0.00 4.00
106 107 0.456628 GTCTCTTCTACCTCGGCCAC 59.543 60.000 2.24 0.00 0.00 5.01
107 108 1.030488 CGTCTCTTCTACCTCGGCCA 61.030 60.000 2.24 0.00 0.00 5.36
108 109 1.726533 CCGTCTCTTCTACCTCGGCC 61.727 65.000 0.00 0.00 0.00 6.13
109 110 1.031029 ACCGTCTCTTCTACCTCGGC 61.031 60.000 0.00 0.00 41.33 5.54
110 111 0.733729 CACCGTCTCTTCTACCTCGG 59.266 60.000 0.00 0.00 42.94 4.63
111 112 1.130749 CACACCGTCTCTTCTACCTCG 59.869 57.143 0.00 0.00 0.00 4.63
112 113 1.135344 GCACACCGTCTCTTCTACCTC 60.135 57.143 0.00 0.00 0.00 3.85
113 114 0.889306 GCACACCGTCTCTTCTACCT 59.111 55.000 0.00 0.00 0.00 3.08
114 115 0.456312 CGCACACCGTCTCTTCTACC 60.456 60.000 0.00 0.00 0.00 3.18
115 116 3.017232 CGCACACCGTCTCTTCTAC 57.983 57.895 0.00 0.00 0.00 2.59
130 131 2.505337 GATCGTGCCACGTACGCA 60.505 61.111 17.83 1.93 43.14 5.24
131 132 3.604202 CGATCGTGCCACGTACGC 61.604 66.667 17.83 0.00 43.14 4.42
132 133 2.947621 CCGATCGTGCCACGTACG 60.948 66.667 17.83 20.97 43.14 3.67
133 134 1.870901 GTCCGATCGTGCCACGTAC 60.871 63.158 17.83 11.18 43.14 3.67
134 135 1.864725 TTGTCCGATCGTGCCACGTA 61.865 55.000 17.83 4.46 43.14 3.57
135 136 3.215597 TTGTCCGATCGTGCCACGT 62.216 57.895 17.83 4.51 43.14 4.49
136 137 2.431771 TTGTCCGATCGTGCCACG 60.432 61.111 11.80 11.80 44.19 4.94
137 138 1.078759 CTCTTGTCCGATCGTGCCAC 61.079 60.000 15.09 5.65 0.00 5.01
138 139 1.215382 CTCTTGTCCGATCGTGCCA 59.785 57.895 15.09 4.44 0.00 4.92
139 140 1.519455 CCTCTTGTCCGATCGTGCC 60.519 63.158 15.09 1.62 0.00 5.01
140 141 0.526524 CTCCTCTTGTCCGATCGTGC 60.527 60.000 15.09 6.78 0.00 5.34
141 142 1.095600 TCTCCTCTTGTCCGATCGTG 58.904 55.000 15.09 5.81 0.00 4.35
142 143 1.096416 GTCTCCTCTTGTCCGATCGT 58.904 55.000 15.09 0.00 0.00 3.73
143 144 1.095600 TGTCTCCTCTTGTCCGATCG 58.904 55.000 8.51 8.51 0.00 3.69
144 145 2.755655 TCTTGTCTCCTCTTGTCCGATC 59.244 50.000 0.00 0.00 0.00 3.69
145 146 2.808919 TCTTGTCTCCTCTTGTCCGAT 58.191 47.619 0.00 0.00 0.00 4.18
146 147 2.287977 TCTTGTCTCCTCTTGTCCGA 57.712 50.000 0.00 0.00 0.00 4.55
147 148 3.697045 AGTATCTTGTCTCCTCTTGTCCG 59.303 47.826 0.00 0.00 0.00 4.79
148 149 5.415221 CAAGTATCTTGTCTCCTCTTGTCC 58.585 45.833 1.84 0.00 0.00 4.02
149 150 4.867608 GCAAGTATCTTGTCTCCTCTTGTC 59.132 45.833 10.49 0.00 34.99 3.18
150 151 4.530161 AGCAAGTATCTTGTCTCCTCTTGT 59.470 41.667 10.49 0.00 34.99 3.16
151 152 4.869297 CAGCAAGTATCTTGTCTCCTCTTG 59.131 45.833 10.49 0.00 35.43 3.02
152 153 4.774726 TCAGCAAGTATCTTGTCTCCTCTT 59.225 41.667 10.49 0.00 0.00 2.85
153 154 4.348486 TCAGCAAGTATCTTGTCTCCTCT 58.652 43.478 10.49 0.00 0.00 3.69
154 155 4.400884 TCTCAGCAAGTATCTTGTCTCCTC 59.599 45.833 10.49 0.00 0.00 3.71
155 156 4.348486 TCTCAGCAAGTATCTTGTCTCCT 58.652 43.478 10.49 0.00 0.00 3.69
156 157 4.727507 TCTCAGCAAGTATCTTGTCTCC 57.272 45.455 10.49 0.00 0.00 3.71
157 158 6.036953 CCATTTCTCAGCAAGTATCTTGTCTC 59.963 42.308 10.49 0.00 0.00 3.36
158 159 5.879223 CCATTTCTCAGCAAGTATCTTGTCT 59.121 40.000 10.49 6.14 0.00 3.41
159 160 5.645497 ACCATTTCTCAGCAAGTATCTTGTC 59.355 40.000 10.49 4.31 0.00 3.18
160 161 5.413833 CACCATTTCTCAGCAAGTATCTTGT 59.586 40.000 10.49 0.00 0.00 3.16
161 162 5.675575 GCACCATTTCTCAGCAAGTATCTTG 60.676 44.000 5.28 5.28 0.00 3.02
162 163 4.397417 GCACCATTTCTCAGCAAGTATCTT 59.603 41.667 0.00 0.00 0.00 2.40
163 164 3.944015 GCACCATTTCTCAGCAAGTATCT 59.056 43.478 0.00 0.00 0.00 1.98
164 165 3.691118 TGCACCATTTCTCAGCAAGTATC 59.309 43.478 0.00 0.00 31.42 2.24
165 166 3.689347 TGCACCATTTCTCAGCAAGTAT 58.311 40.909 0.00 0.00 31.42 2.12
166 167 3.138884 TGCACCATTTCTCAGCAAGTA 57.861 42.857 0.00 0.00 31.42 2.24
167 168 1.985473 TGCACCATTTCTCAGCAAGT 58.015 45.000 0.00 0.00 31.42 3.16
169 170 1.000060 GCTTGCACCATTTCTCAGCAA 60.000 47.619 0.00 0.00 42.27 3.91
170 171 0.599558 GCTTGCACCATTTCTCAGCA 59.400 50.000 0.00 0.00 0.00 4.41
171 172 0.455633 CGCTTGCACCATTTCTCAGC 60.456 55.000 0.00 0.00 0.00 4.26
172 173 1.129998 CTCGCTTGCACCATTTCTCAG 59.870 52.381 0.00 0.00 0.00 3.35
173 174 1.159285 CTCGCTTGCACCATTTCTCA 58.841 50.000 0.00 0.00 0.00 3.27
174 175 0.449388 CCTCGCTTGCACCATTTCTC 59.551 55.000 0.00 0.00 0.00 2.87
175 176 0.962356 CCCTCGCTTGCACCATTTCT 60.962 55.000 0.00 0.00 0.00 2.52
176 177 1.508088 CCCTCGCTTGCACCATTTC 59.492 57.895 0.00 0.00 0.00 2.17
177 178 2.639327 GCCCTCGCTTGCACCATTT 61.639 57.895 0.00 0.00 0.00 2.32
178 179 3.064324 GCCCTCGCTTGCACCATT 61.064 61.111 0.00 0.00 0.00 3.16
208 209 0.035439 CCGGGTAGGTGCTGATTGTT 60.035 55.000 0.00 0.00 34.51 2.83
209 210 0.907704 TCCGGGTAGGTGCTGATTGT 60.908 55.000 0.00 0.00 41.99 2.71
213 214 2.656069 GCTTCCGGGTAGGTGCTGA 61.656 63.158 0.00 0.00 41.99 4.26
253 254 2.340328 GGACGATTTGTGGCCACCC 61.340 63.158 32.62 20.26 0.00 4.61
271 272 3.390017 CGGAGCACGCGATCGATG 61.390 66.667 21.57 16.91 39.41 3.84
414 455 4.887748 TCTAGTTGCAGAGAGGTTTCTTG 58.112 43.478 0.00 0.00 32.53 3.02
420 461 3.501349 TCAGTTCTAGTTGCAGAGAGGT 58.499 45.455 0.00 0.00 0.00 3.85
422 463 5.101628 GTGATCAGTTCTAGTTGCAGAGAG 58.898 45.833 0.00 0.00 0.00 3.20
434 477 3.243873 TGTCTTCTTGCGTGATCAGTTCT 60.244 43.478 0.00 0.00 0.00 3.01
435 478 3.059884 TGTCTTCTTGCGTGATCAGTTC 58.940 45.455 0.00 0.00 0.00 3.01
457 500 2.237143 CCATGATGACTACACTGGTGGT 59.763 50.000 5.70 0.00 41.93 4.16
463 506 0.839946 GGGGCCATGATGACTACACT 59.160 55.000 4.39 0.00 0.00 3.55
464 507 0.179018 GGGGGCCATGATGACTACAC 60.179 60.000 4.39 0.00 0.00 2.90
572 632 4.399395 CTGCTGCTTGGCGGAGGA 62.399 66.667 0.00 0.00 40.74 3.71
637 697 4.400961 ACCGCCTCTTCTGCTGCC 62.401 66.667 0.00 0.00 0.00 4.85
648 708 2.981909 TCGTCGTCTTGACCGCCT 60.982 61.111 0.00 0.00 45.23 5.52
720 783 2.771089 GACTGACTTGAGGCAATGTCA 58.229 47.619 2.37 8.11 33.81 3.58
724 787 1.670087 CGACGACTGACTTGAGGCAAT 60.670 52.381 0.00 0.00 0.00 3.56
730 793 0.526211 CCCATCGACGACTGACTTGA 59.474 55.000 0.00 0.00 0.00 3.02
731 794 1.078759 GCCCATCGACGACTGACTTG 61.079 60.000 0.00 0.00 0.00 3.16
737 800 1.739338 GATCCAGCCCATCGACGACT 61.739 60.000 0.00 0.00 0.00 4.18
747 810 3.281727 TGTGTCTAATTGATCCAGCCC 57.718 47.619 0.00 0.00 0.00 5.19
768 831 4.613622 GCACGCATCAACTGAACTAAACAT 60.614 41.667 0.00 0.00 0.00 2.71
777 840 2.953605 GCACGCACGCATCAACTGA 61.954 57.895 0.00 0.00 0.00 3.41
810 935 6.557649 GCAGCTCGCATCATGAATTCATGT 62.558 45.833 35.74 24.77 46.01 3.21
819 950 3.620929 AATTAAGCAGCTCGCATCATG 57.379 42.857 0.00 0.00 46.13 3.07
843 974 2.421424 GCAAGAATGAGATTGTTCGGCT 59.579 45.455 0.00 0.00 31.44 5.52
897 1094 0.460987 GTCTTGGCATGTCGAGGAGG 60.461 60.000 14.66 0.00 0.00 4.30
898 1095 0.803768 CGTCTTGGCATGTCGAGGAG 60.804 60.000 14.66 5.38 0.00 3.69
899 1096 1.215382 CGTCTTGGCATGTCGAGGA 59.785 57.895 14.66 0.00 0.00 3.71
900 1097 0.172578 TACGTCTTGGCATGTCGAGG 59.827 55.000 22.25 4.20 0.00 4.63
926 1148 2.100989 AGGGATGTGAAGACGGACTAC 58.899 52.381 0.00 0.00 0.00 2.73
927 1149 2.526888 AGGGATGTGAAGACGGACTA 57.473 50.000 0.00 0.00 0.00 2.59
929 1151 2.474410 AAAGGGATGTGAAGACGGAC 57.526 50.000 0.00 0.00 0.00 4.79
943 1166 2.354539 CACGTTGGCGCAAAAGGG 60.355 61.111 15.06 6.88 42.83 3.95
945 1168 1.657181 GGACACGTTGGCGCAAAAG 60.657 57.895 10.83 9.83 42.83 2.27
958 1181 1.373435 TGGAACACGGGATGGACAC 59.627 57.895 0.00 0.00 0.00 3.67
978 1201 2.224066 CGCCTCCTAACAGTAATCCAGG 60.224 54.545 0.00 0.00 0.00 4.45
980 1203 2.742348 TCGCCTCCTAACAGTAATCCA 58.258 47.619 0.00 0.00 0.00 3.41
981 1204 3.555168 CCATCGCCTCCTAACAGTAATCC 60.555 52.174 0.00 0.00 0.00 3.01
982 1205 3.069729 ACCATCGCCTCCTAACAGTAATC 59.930 47.826 0.00 0.00 0.00 1.75
983 1206 3.039011 ACCATCGCCTCCTAACAGTAAT 58.961 45.455 0.00 0.00 0.00 1.89
984 1207 2.167693 CACCATCGCCTCCTAACAGTAA 59.832 50.000 0.00 0.00 0.00 2.24
990 1255 1.904771 CCACACCATCGCCTCCTAA 59.095 57.895 0.00 0.00 0.00 2.69
1266 1539 0.857935 CTGCAGCTCGAATCGATTCC 59.142 55.000 27.91 16.46 34.61 3.01
1326 1599 0.611896 AATCGTCCCCCTTTTGCTGG 60.612 55.000 0.00 0.00 0.00 4.85
1348 1622 1.462283 CACAATCCAGCTGAGAACACG 59.538 52.381 17.39 0.00 0.00 4.49
1374 1648 9.184523 TGGAAAATCCATAATACAACCAAGTAG 57.815 33.333 0.00 0.00 42.67 2.57
1435 1716 8.736244 TGCTTAACTAAACTCAGAACAAAAACT 58.264 29.630 0.00 0.00 0.00 2.66
1487 1773 5.237344 AGCAAAACTTAACAGTGTAGCAGAG 59.763 40.000 0.00 0.00 31.60 3.35
1488 1774 5.123227 AGCAAAACTTAACAGTGTAGCAGA 58.877 37.500 0.00 0.00 31.60 4.26
1493 1779 6.993308 TGTGGATAGCAAAACTTAACAGTGTA 59.007 34.615 0.00 0.00 31.60 2.90
1494 1780 5.825679 TGTGGATAGCAAAACTTAACAGTGT 59.174 36.000 0.00 0.00 31.60 3.55
1495 1781 6.017109 ACTGTGGATAGCAAAACTTAACAGTG 60.017 38.462 3.99 0.00 42.88 3.66
1565 1852 1.564348 ACCTCCCGGCAGAAAATACAT 59.436 47.619 0.00 0.00 0.00 2.29
1585 1872 7.156673 ACGGTTCTTTTGTTTGCTAGTATCTA 58.843 34.615 0.00 0.00 0.00 1.98
1596 1883 8.652463 CAATCAGTTAAAACGGTTCTTTTGTTT 58.348 29.630 0.00 0.00 37.41 2.83
1599 1886 7.749539 ACAATCAGTTAAAACGGTTCTTTTG 57.250 32.000 0.00 0.00 0.00 2.44
1672 1964 1.339055 TGCTTTTCCTGATCCACGGAG 60.339 52.381 0.00 0.00 0.00 4.63
1687 1979 5.221441 GGTACCAAATTTCAGTTCCTGCTTT 60.221 40.000 7.15 0.00 0.00 3.51
1691 1983 4.321230 GCAGGTACCAAATTTCAGTTCCTG 60.321 45.833 24.94 24.94 46.25 3.86
1703 2027 4.730966 TCTACCAAAATGCAGGTACCAAA 58.269 39.130 15.94 0.00 39.31 3.28
1784 2165 6.513180 TGAAGAGGATCCACGTACATATTTC 58.487 40.000 15.82 5.64 33.66 2.17
1794 2175 1.404717 CCACACTGAAGAGGATCCACG 60.405 57.143 15.82 0.00 33.66 4.94
1802 2184 2.741228 GCTGATAGGCCACACTGAAGAG 60.741 54.545 5.01 0.00 0.00 2.85
1837 2219 2.258591 CTCCCGTCTGACCACACG 59.741 66.667 1.55 0.00 0.00 4.49
1869 2251 4.040952 CCCGAGATCTGAATACCTCCATTT 59.959 45.833 0.00 0.00 0.00 2.32
1877 2259 4.142790 TCCTACACCCGAGATCTGAATAC 58.857 47.826 0.00 0.00 0.00 1.89
1880 2262 2.025226 ACTCCTACACCCGAGATCTGAA 60.025 50.000 0.00 0.00 0.00 3.02
1890 2272 1.201424 CCCTTGGTACTCCTACACCC 58.799 60.000 0.00 0.00 33.61 4.61
1893 2275 4.600111 ACAAATTCCCTTGGTACTCCTACA 59.400 41.667 0.00 0.00 34.23 2.74
1894 2276 4.941873 CACAAATTCCCTTGGTACTCCTAC 59.058 45.833 0.00 0.00 34.23 3.18
1940 2328 0.458543 CTGAAGGATCACCACGACCG 60.459 60.000 0.00 0.00 38.94 4.79
1943 2331 3.632333 AGATACTGAAGGATCACCACGA 58.368 45.455 5.34 0.00 38.94 4.35
1944 2332 5.010112 ACATAGATACTGAAGGATCACCACG 59.990 44.000 5.34 0.00 38.94 4.94
1945 2333 6.183360 ACACATAGATACTGAAGGATCACCAC 60.183 42.308 5.34 0.00 38.94 4.16
1946 2334 5.899547 ACACATAGATACTGAAGGATCACCA 59.100 40.000 5.34 0.00 38.94 4.17
1947 2335 6.412362 ACACATAGATACTGAAGGATCACC 57.588 41.667 5.34 0.00 0.00 4.02
1948 2336 6.926272 GGAACACATAGATACTGAAGGATCAC 59.074 42.308 5.34 0.00 0.00 3.06
1949 2337 6.841229 AGGAACACATAGATACTGAAGGATCA 59.159 38.462 5.34 0.00 0.00 2.92
1950 2338 7.296628 AGGAACACATAGATACTGAAGGATC 57.703 40.000 0.00 0.00 0.00 3.36
1951 2339 7.126421 ACAAGGAACACATAGATACTGAAGGAT 59.874 37.037 0.00 0.00 0.00 3.24
1952 2340 6.440647 ACAAGGAACACATAGATACTGAAGGA 59.559 38.462 0.00 0.00 0.00 3.36
1953 2341 6.644347 ACAAGGAACACATAGATACTGAAGG 58.356 40.000 0.00 0.00 0.00 3.46
1954 2342 8.553459 AAACAAGGAACACATAGATACTGAAG 57.447 34.615 0.00 0.00 0.00 3.02
1955 2343 8.783093 CAAAACAAGGAACACATAGATACTGAA 58.217 33.333 0.00 0.00 0.00 3.02
1956 2344 8.154203 TCAAAACAAGGAACACATAGATACTGA 58.846 33.333 0.00 0.00 0.00 3.41
1957 2345 8.322906 TCAAAACAAGGAACACATAGATACTG 57.677 34.615 0.00 0.00 0.00 2.74
1958 2346 8.918202 TTCAAAACAAGGAACACATAGATACT 57.082 30.769 0.00 0.00 0.00 2.12
1961 2349 9.480053 CAAATTCAAAACAAGGAACACATAGAT 57.520 29.630 0.00 0.00 0.00 1.98
1962 2350 8.474025 ACAAATTCAAAACAAGGAACACATAGA 58.526 29.630 0.00 0.00 0.00 1.98
1963 2351 8.647143 ACAAATTCAAAACAAGGAACACATAG 57.353 30.769 0.00 0.00 0.00 2.23
1964 2352 9.442047 AAACAAATTCAAAACAAGGAACACATA 57.558 25.926 0.00 0.00 0.00 2.29
1965 2353 7.920160 AACAAATTCAAAACAAGGAACACAT 57.080 28.000 0.00 0.00 0.00 3.21
1966 2354 7.736447 AAACAAATTCAAAACAAGGAACACA 57.264 28.000 0.00 0.00 0.00 3.72
1967 2355 8.073167 ACAAAACAAATTCAAAACAAGGAACAC 58.927 29.630 0.00 0.00 0.00 3.32
1968 2356 8.072567 CACAAAACAAATTCAAAACAAGGAACA 58.927 29.630 0.00 0.00 0.00 3.18
1969 2357 8.073167 ACACAAAACAAATTCAAAACAAGGAAC 58.927 29.630 0.00 0.00 0.00 3.62
1970 2358 8.072567 CACACAAAACAAATTCAAAACAAGGAA 58.927 29.630 0.00 0.00 0.00 3.36
1971 2359 7.442364 TCACACAAAACAAATTCAAAACAAGGA 59.558 29.630 0.00 0.00 0.00 3.36
1972 2360 7.579726 TCACACAAAACAAATTCAAAACAAGG 58.420 30.769 0.00 0.00 0.00 3.61
1973 2361 9.609950 ATTCACACAAAACAAATTCAAAACAAG 57.390 25.926 0.00 0.00 0.00 3.16
1974 2362 9.956720 AATTCACACAAAACAAATTCAAAACAA 57.043 22.222 0.00 0.00 0.00 2.83
1977 2365 9.766277 GCTAATTCACACAAAACAAATTCAAAA 57.234 25.926 0.00 0.00 0.00 2.44
1978 2366 8.394121 GGCTAATTCACACAAAACAAATTCAAA 58.606 29.630 0.00 0.00 0.00 2.69
1979 2367 7.550551 TGGCTAATTCACACAAAACAAATTCAA 59.449 29.630 0.00 0.00 0.00 2.69
1980 2368 7.044181 TGGCTAATTCACACAAAACAAATTCA 58.956 30.769 0.00 0.00 0.00 2.57
1981 2369 7.475771 TGGCTAATTCACACAAAACAAATTC 57.524 32.000 0.00 0.00 0.00 2.17
1982 2370 8.449251 AATGGCTAATTCACACAAAACAAATT 57.551 26.923 0.00 0.00 0.00 1.82
1983 2371 7.933033 AGAATGGCTAATTCACACAAAACAAAT 59.067 29.630 13.00 0.00 46.21 2.32
1984 2372 7.224362 CAGAATGGCTAATTCACACAAAACAAA 59.776 33.333 13.00 0.00 46.21 2.83
1985 2373 6.700960 CAGAATGGCTAATTCACACAAAACAA 59.299 34.615 13.00 0.00 46.21 2.83
1986 2374 6.183360 ACAGAATGGCTAATTCACACAAAACA 60.183 34.615 13.00 0.00 46.21 2.83
1987 2375 6.144402 CACAGAATGGCTAATTCACACAAAAC 59.856 38.462 13.00 0.00 46.21 2.43
1988 2376 6.215121 CACAGAATGGCTAATTCACACAAAA 58.785 36.000 13.00 0.00 46.21 2.44
1989 2377 5.278907 CCACAGAATGGCTAATTCACACAAA 60.279 40.000 13.00 0.00 46.21 2.83
1990 2378 4.218200 CCACAGAATGGCTAATTCACACAA 59.782 41.667 13.00 0.00 46.21 3.33
2013 2457 1.813862 GCCTTCCCTTTTTGCCAAACC 60.814 52.381 0.00 0.00 0.00 3.27
2026 2470 0.663153 GCACATAATGACGCCTTCCC 59.337 55.000 0.00 0.00 0.00 3.97
2027 2471 1.668419 AGCACATAATGACGCCTTCC 58.332 50.000 0.00 0.00 0.00 3.46
2057 2503 4.251543 TGTCTTGAGTCGAACAATGCTA 57.748 40.909 6.73 0.00 0.00 3.49
2058 2504 3.111853 TGTCTTGAGTCGAACAATGCT 57.888 42.857 6.73 0.00 0.00 3.79
2059 2505 3.002246 TGTTGTCTTGAGTCGAACAATGC 59.998 43.478 1.77 2.45 0.00 3.56
2070 2516 7.539712 ACGGATATGTAAATGTTGTCTTGAG 57.460 36.000 0.00 0.00 0.00 3.02
2072 2518 8.233868 TGAAACGGATATGTAAATGTTGTCTTG 58.766 33.333 0.00 0.00 0.00 3.02
2076 2522 8.506168 AGATGAAACGGATATGTAAATGTTGT 57.494 30.769 0.00 0.00 0.00 3.32
2089 2535 5.185454 TGCACAATAAGAGATGAAACGGAT 58.815 37.500 0.00 0.00 0.00 4.18
2121 2567 4.245660 AGTGAATGACTGACATGGTTACG 58.754 43.478 0.00 0.00 39.39 3.18
2124 2570 4.717877 TCAAGTGAATGACTGACATGGTT 58.282 39.130 0.00 0.00 39.39 3.67
2125 2571 4.356405 TCAAGTGAATGACTGACATGGT 57.644 40.909 0.00 0.00 39.39 3.55
2146 2592 6.428159 GCCGGTACAAGAATCTATCATGAAAT 59.572 38.462 1.90 0.00 31.27 2.17
2148 2594 5.163353 TGCCGGTACAAGAATCTATCATGAA 60.163 40.000 1.90 0.00 31.27 2.57
2210 2656 2.171659 TCTGTTGGTAACTGTTGGCAGA 59.828 45.455 2.69 6.74 45.28 4.26
2212 2658 2.719531 TCTGTTGGTAACTGTTGGCA 57.280 45.000 2.69 0.00 37.61 4.92
2213 2659 2.488153 GGATCTGTTGGTAACTGTTGGC 59.512 50.000 2.69 0.00 37.61 4.52
2214 2660 3.753272 CAGGATCTGTTGGTAACTGTTGG 59.247 47.826 2.69 0.00 37.61 3.77
2215 2661 4.641396 TCAGGATCTGTTGGTAACTGTTG 58.359 43.478 2.69 0.00 32.61 3.33
2216 2662 4.974645 TCAGGATCTGTTGGTAACTGTT 57.025 40.909 0.00 0.00 32.61 3.16
2217 2663 4.974645 TTCAGGATCTGTTGGTAACTGT 57.025 40.909 0.00 0.00 32.61 3.55
2218 2664 4.455877 GGTTTCAGGATCTGTTGGTAACTG 59.544 45.833 0.00 0.00 32.61 3.16
2219 2665 4.104102 TGGTTTCAGGATCTGTTGGTAACT 59.896 41.667 0.00 0.00 32.61 2.24
2220 2666 4.394729 TGGTTTCAGGATCTGTTGGTAAC 58.605 43.478 0.00 0.00 32.61 2.50
2221 2667 4.715534 TGGTTTCAGGATCTGTTGGTAA 57.284 40.909 0.00 0.00 32.61 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.