AutoCloner

Multiple sequence alignment - TraesCS6A01G411900

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BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G411900	chr6A	100.000	8671	0	0	1	8671	613968591	613977261	0.000000e+00	16013.0
1	TraesCS6A01G411900	chr6A	97.865	281	4	2	3902	4181	104307241	104306962	1.310000e-132	484.0
2	TraesCS6A01G411900	chr6A	93.722	223	13	1	5925	6147	276454115	276453894	5.020000e-87	333.0
3	TraesCS6A01G411900	chr6B	92.576	2034	130	12	6138	8159	713461384	713463408	0.000000e+00	2900.0
4	TraesCS6A01G411900	chr6B	94.545	1760	91	3	6151	7909	713909196	713910951	0.000000e+00	2713.0
5	TraesCS6A01G411900	chr6B	87.958	2209	231	24	383	2579	713905500	713907685	0.000000e+00	2573.0
6	TraesCS6A01G411900	chr6B	93.058	1743	109	5	6138	7872	713946559	713948297	0.000000e+00	2538.0
7	TraesCS6A01G411900	chr6B	90.812	1774	154	7	6142	7909	713499446	713501216	0.000000e+00	2364.0
8	TraesCS6A01G411900	chr6B	91.430	1727	133	9	6188	7910	713358642	713360357	0.000000e+00	2355.0
9	TraesCS6A01G411900	chr6B	90.836	1735	154	5	6177	7909	713680286	713682017	0.000000e+00	2318.0
10	TraesCS6A01G411900	chr6B	89.904	1773	162	10	6142	7902	713826029	713827796	0.000000e+00	2266.0
11	TraesCS6A01G411900	chr6B	90.296	1690	145	6	6142	7829	713771428	713773100	0.000000e+00	2194.0
12	TraesCS6A01G411900	chr6B	93.256	1379	86	5	4553	5924	713460010	713461388	0.000000e+00	2025.0
13	TraesCS6A01G411900	chr6B	92.241	1379	85	11	4553	5924	713945200	713946563	0.000000e+00	1934.0
14	TraesCS6A01G411900	chr6B	91.251	1383	103	13	4550	5922	713907822	713909196	0.000000e+00	1868.0
15	TraesCS6A01G411900	chr6B	86.333	1617	167	27	650	2259	713458409	713459978	0.000000e+00	1712.0
16	TraesCS6A01G411900	chr6B	87.077	1478	147	17	790	2260	713943729	713945169	0.000000e+00	1631.0
17	TraesCS6A01G411900	chr6B	80.345	1796	244	44	277	2040	713822008	713823726	0.000000e+00	1260.0
18	TraesCS6A01G411900	chr6B	83.297	1383	206	21	4553	5922	713345516	713346886	0.000000e+00	1251.0
19	TraesCS6A01G411900	chr6B	82.701	1370	183	31	795	2136	713755231	713756574	0.000000e+00	1168.0
20	TraesCS6A01G411900	chr6B	82.605	1190	174	17	879	2052	713669032	713670204	0.000000e+00	1020.0
21	TraesCS6A01G411900	chr6B	78.728	1368	229	39	918	2257	713768012	713769345	0.000000e+00	857.0
22	TraesCS6A01G411900	chr6B	81.991	1055	141	27	4550	5589	713770053	713771073	0.000000e+00	850.0
23	TraesCS6A01G411900	chr6B	82.952	874	127	12	1184	2045	713496458	713497321	0.000000e+00	769.0
24	TraesCS6A01G411900	chr6B	77.100	1131	187	37	1253	2356	713342955	713344040	9.700000e-164	588.0
25	TraesCS6A01G411900	chr6B	98.221	281	4	1	3902	4181	580307673	580307953	2.810000e-134	490.0
26	TraesCS6A01G411900	chr6B	77.233	918	154	30	4550	5431	713677444	713678342	3.640000e-133	486.0
27	TraesCS6A01G411900	chr6B	80.034	591	100	16	4783	5365	713871830	713872410	1.040000e-113	422.0
28	TraesCS6A01G411900	chr6B	89.274	317	33	1	383	699	713495731	713496046	6.310000e-106	396.0
29	TraesCS6A01G411900	chr6B	90.909	286	25	1	963	1248	713496182	713496466	4.910000e-102	383.0
30	TraesCS6A01G411900	chr6B	85.017	287	24	8	383	661	713943419	713943694	3.080000e-69	274.0
31	TraesCS6A01G411900	chr6B	87.204	211	22	3	9	215	713821161	713821370	1.460000e-57	235.0
32	TraesCS6A01G411900	chr6B	83.083	266	36	6	490	755	713668694	713668950	5.230000e-57	233.0
33	TraesCS6A01G411900	chr6B	91.129	124	11	0	210	333	713905081	713905204	1.500000e-37	169.0
34	TraesCS6A01G411900	chr6B	89.516	124	13	0	210	333	713493457	713493580	3.240000e-34	158.0
35	TraesCS6A01G411900	chr6B	91.579	95	7	1	557	651	713458200	713458293	7.060000e-26	130.0
36	TraesCS6A01G411900	chr6D	89.565	2022	189	14	6142	8149	467859368	467861381	0.000000e+00	2545.0
37	TraesCS6A01G411900	chr6D	92.879	1278	81	1	2579	3846	464682870	464684147	0.000000e+00	1847.0
38	TraesCS6A01G411900	chr6D	92.254	1278	72	9	2579	3846	159518039	159519299	0.000000e+00	1786.0
39	TraesCS6A01G411900	chr6D	91.236	1278	101	2	2579	3846	343674279	343675555	0.000000e+00	1729.0
40	TraesCS6A01G411900	chr6D	91.538	1229	88	8	2631	3848	86022235	86021012	0.000000e+00	1679.0
41	TraesCS6A01G411900	chr6D	90.588	1275	85	19	2581	3845	77829917	77831166	0.000000e+00	1657.0
42	TraesCS6A01G411900	chr6D	90.312	1280	101	11	2579	3846	928124	926856	0.000000e+00	1655.0
43	TraesCS6A01G411900	chr6D	88.830	1316	100	19	2577	3849	6551363	6552674	0.000000e+00	1572.0
44	TraesCS6A01G411900	chr6D	86.838	1398	176	7	6183	7576	263266707	263265314	0.000000e+00	1555.0
45	TraesCS6A01G411900	chr6D	80.038	2114	294	81	277	2356	467855372	467857391	0.000000e+00	1448.0
46	TraesCS6A01G411900	chr6D	75.089	1397	259	49	4550	5910	467858011	467859354	3.510000e-158	569.0
47	TraesCS6A01G411900	chr6D	89.394	462	33	10	8154	8611	467862503	467862952	1.260000e-157	568.0
48	TraesCS6A01G411900	chr6D	93.013	229	14	2	5921	6149	469559270	469559044	5.020000e-87	333.0
49	TraesCS6A01G411900	chr6D	93.182	220	14	1	5923	6142	35626882	35627100	1.090000e-83	322.0
50	TraesCS6A01G411900	chr6D	92.727	220	15	1	5923	6142	329496956	329497174	5.050000e-82	316.0
51	TraesCS6A01G411900	chr6D	91.667	228	15	3	5922	6148	319681978	319682202	6.540000e-81	313.0
52	TraesCS6A01G411900	chr6D	91.630	227	18	1	5920	6146	361481599	361481824	6.540000e-81	313.0
53	TraesCS6A01G411900	chr6D	72.408	627	156	16	6640	7261	35492025	35491411	5.350000e-42	183.0
54	TraesCS6A01G411900	chr3D	93.711	1288	58	3	2577	3854	47338873	47340147	0.000000e+00	1908.0
55	TraesCS6A01G411900	chr3D	92.674	1051	64	4	2577	3617	335200719	335199672	0.000000e+00	1502.0
56	TraesCS6A01G411900	chr3D	71.818	330	83	8	6775	7102	587047013	587046692	1.550000e-12	86.1
57	TraesCS6A01G411900	chr4D	93.776	1221	63	4	2589	3799	469602687	469601470	0.000000e+00	1821.0
58	TraesCS6A01G411900	chr4D	93.103	261	18	0	4291	4551	99349412	99349152	4.910000e-102	383.0
59	TraesCS6A01G411900	chr4D	93.013	229	13	3	5915	6143	87544259	87544034	1.800000e-86	331.0
60	TraesCS6A01G411900	chr4D	94.393	214	9	3	5929	6142	9068508	9068718	8.390000e-85	326.0
61	TraesCS6A01G411900	chr4D	92.377	223	16	1	5923	6145	213305490	213305269	5.050000e-82	316.0
62	TraesCS6A01G411900	chr4D	84.211	228	29	5	2577	2801	52767415	52767192	1.900000e-51	215.0
63	TraesCS6A01G411900	chr4D	84.706	170	16	4	2577	2736	499688122	499687953	2.510000e-35	161.0
64	TraesCS6A01G411900	chr2D	91.959	1281	83	9	2587	3852	318417845	318416570	0.000000e+00	1777.0
65	TraesCS6A01G411900	chr2D	90.842	273	23	2	4283	4553	588717779	588718051	1.780000e-96	364.0
66	TraesCS6A01G411900	chr2D	96.364	220	7	1	5923	6142	456501939	456502157	2.300000e-95	361.0
67	TraesCS6A01G411900	chr2D	91.321	265	22	1	4291	4555	643797676	643797413	2.300000e-95	361.0
68	TraesCS6A01G411900	chr2D	90.406	271	24	2	4282	4551	366629108	366629377	1.070000e-93	355.0
69	TraesCS6A01G411900	chr2D	94.144	222	10	2	5922	6143	66114699	66114917	1.390000e-87	335.0
70	TraesCS6A01G411900	chr5A	90.701	1269	109	5	2579	3846	276115953	276114693	0.000000e+00	1681.0
71	TraesCS6A01G411900	chr5A	98.577	281	2	2	3902	4181	630124057	630123778	6.050000e-136	496.0
72	TraesCS6A01G411900	chr5A	94.170	223	12	1	5920	6142	59028048	59028269	1.080000e-88	339.0
73	TraesCS6A01G411900	chr1A	90.661	1285	83	13	2577	3848	585985388	585986648	0.000000e+00	1674.0
74	TraesCS6A01G411900	chr1A	89.489	333	20	5	3872	4192	272182932	272182603	2.910000e-109	407.0
75	TraesCS6A01G411900	chr1A	85.625	160	21	2	2579	2737	412453699	412453541	5.380000e-37	167.0
76	TraesCS6A01G411900	chr3A	90.776	1225	108	3	2576	3799	56388880	56390100	0.000000e+00	1631.0
77	TraesCS6A01G411900	chr3A	89.449	1270	127	5	2576	3844	656113293	656114556	0.000000e+00	1596.0
78	TraesCS6A01G411900	chr3A	98.227	282	3	2	3902	4182	363316255	363315975	7.820000e-135	492.0
79	TraesCS6A01G411900	chr3A	97.527	283	5	2	3902	4183	291788615	291788334	4.710000e-132	483.0
80	TraesCS6A01G411900	chr3A	100.000	31	0	0	3881	3911	363316287	363316257	3.380000e-04	58.4
81	TraesCS6A01G411900	chrUn	90.551	889	61	4	2579	3456	96337602	96336726	0.000000e+00	1155.0
82	TraesCS6A01G411900	chrUn	93.119	218	14	1	5925	6142	325729078	325729294	1.400000e-82	318.0
83	TraesCS6A01G411900	chrUn	93.119	218	14	1	5925	6142	334359964	334359748	1.400000e-82	318.0
84	TraesCS6A01G411900	chrUn	92.000	225	17	1	5918	6142	192573082	192573305	1.820000e-81	315.0
85	TraesCS6A01G411900	chrUn	92.000	225	17	1	5918	6142	339572355	339572132	1.820000e-81	315.0
86	TraesCS6A01G411900	chrUn	91.928	223	15	2	5920	6142	111820149	111820368	8.450000e-80	309.0
87	TraesCS6A01G411900	chrUn	91.364	220	19	0	5923	6142	62884330	62884111	1.410000e-77	302.0
88	TraesCS6A01G411900	chrUn	90.135	223	21	1	5923	6145	147148670	147148891	1.100000e-73	289.0
89	TraesCS6A01G411900	chrUn	91.038	212	17	2	5923	6133	49152345	49152135	1.420000e-72	285.0
90	TraesCS6A01G411900	chrUn	89.474	228	21	3	5915	6142	103268373	103268597	1.420000e-72	285.0
91	TraesCS6A01G411900	chrUn	90.698	215	17	3	5922	6135	99192362	99192574	5.120000e-72	283.0
92	TraesCS6A01G411900	chrUn	81.893	243	27	9	2573	2801	41921479	41921718	1.150000e-43	189.0
93	TraesCS6A01G411900	chrUn	81.532	222	34	5	2579	2797	31230456	31230673	8.950000e-40	176.0
94	TraesCS6A01G411900	chrUn	80.000	230	25	8	2579	2795	218124082	218123861	5.420000e-32	150.0
95	TraesCS6A01G411900	chrUn	80.000	230	25	8	2579	2795	404444845	404444624	5.420000e-32	150.0
96	TraesCS6A01G411900	chr2A	99.003	301	1	2	3882	4181	30311939	30311640	9.900000e-149	538.0
97	TraesCS6A01G411900	chr2A	98.221	281	4	1	3902	4181	241962424	241962704	2.810000e-134	490.0
98	TraesCS6A01G411900	chr2A	91.513	271	22	1	4282	4552	575349015	575349284	1.060000e-98	372.0
99	TraesCS6A01G411900	chr4A	97.544	285	6	1	3902	4185	146758543	146758259	3.640000e-133	486.0
100	TraesCS6A01G411900	chr4A	93.827	324	7	3	3874	4184	478200058	478199735	7.880000e-130	475.0
101	TraesCS6A01G411900	chr4A	79.355	310	51	3	3882	4179	596766401	596766709	1.140000e-48	206.0
102	TraesCS6A01G411900	chr4A	100.000	28	0	0	124	151	729817792	729817819	1.600000e-02	52.8
103	TraesCS6A01G411900	chr3B	95.724	304	10	3	3881	4183	145959987	145960288	3.640000e-133	486.0
104	TraesCS6A01G411900	chr3B	91.635	263	22	0	4291	4553	772187478	772187216	1.780000e-96	364.0
105	TraesCS6A01G411900	chr3B	93.013	229	15	1	5922	6150	750436328	750436555	5.020000e-87	333.0
106	TraesCS6A01G411900	chr3B	81.789	313	44	5	3881	4181	23694472	23694783	5.200000e-62	250.0
107	TraesCS6A01G411900	chr7B	91.418	268	23	0	4287	4554	737775132	737774865	1.380000e-97	368.0
108	TraesCS6A01G411900	chr7B	90.943	265	24	0	4287	4551	737047029	737046765	2.980000e-94	357.0
109	TraesCS6A01G411900	chr7B	90.943	265	24	0	4287	4551	737371521	737371257	2.980000e-94	357.0
110	TraesCS6A01G411900	chr7B	94.091	220	12	1	5923	6142	706059569	706059351	5.020000e-87	333.0
111	TraesCS6A01G411900	chr7B	94.091	220	12	1	5923	6142	714409138	714409356	5.020000e-87	333.0
112	TraesCS6A01G411900	chr7B	82.109	313	43	5	3882	4182	51911330	51911019	1.120000e-63	255.0
113	TraesCS6A01G411900	chr7B	78.313	249	53	1	6663	6911	642503019	642503266	9.010000e-35	159.0
114	TraesCS6A01G411900	chr7D	94.619	223	11	1	5923	6145	578394908	578394687	2.320000e-90	344.0
115	TraesCS6A01G411900	chr7D	93.722	223	13	1	5923	6145	578419758	578419537	5.020000e-87	333.0
116	TraesCS6A01G411900	chr7D	92.952	227	15	1	5923	6149	227049056	227048831	6.490000e-86	329.0
117	TraesCS6A01G411900	chr7D	93.274	223	14	1	5923	6145	578386617	578386396	2.330000e-85	327.0
118	TraesCS6A01G411900	chr7A	93.722	223	14	0	5920	6142	307084797	307084575	1.390000e-87	335.0
119	TraesCS6A01G411900	chr5D	93.333	225	13	2	5919	6142	7044194	7044417	1.800000e-86	331.0
120	TraesCS6A01G411900	chr5D	93.665	221	12	2	5923	6142	164651736	164651517	6.490000e-86	329.0
121	TraesCS6A01G411900	chr5D	93.636	220	13	1	5923	6142	362935100	362934882	2.330000e-85	327.0
122	TraesCS6A01G411900	chr5D	76.868	281	65	0	6619	6899	447393283	447393003	9.010000e-35	159.0
123	TraesCS6A01G411900	chr5D	76.642	137	26	4	6762	6894	543457479	543457613	4.340000e-08	71.3
124	TraesCS6A01G411900	chr4B	92.889	225	15	1	5918	6142	516561068	516561291	8.390000e-85	326.0
125	TraesCS6A01G411900	chr4B	92.825	223	14	2	5920	6142	519493758	519493978	1.090000e-83	322.0
126	TraesCS6A01G411900	chr4B	92.444	225	16	1	5918	6142	425534734	425534511	3.910000e-83	320.0
127	TraesCS6A01G411900	chr4B	92.444	225	15	1	5918	6142	539165422	539165200	3.910000e-83	320.0
128	TraesCS6A01G411900	chr4B	81.818	308	43	5	3884	4179	385922979	385922673	6.720000e-61	246.0
129	TraesCS6A01G411900	chr1D	92.544	228	15	2	5916	6142	288088415	288088189	8.390000e-85	326.0
130	TraesCS6A01G411900	chr1D	84.034	238	22	8	2577	2801	352188938	352189172	1.900000e-51	215.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G411900	chr6A	613968591	613977261	8670	False	16013.000000	16013	100.000000	1	8671	1	chr6A.!!$F1	8670
1	TraesCS6A01G411900	chr6B	713358642	713360357	1715	False	2355.000000	2355	91.430000	6188	7910	1	chr6B.!!$F2	1722
2	TraesCS6A01G411900	chr6B	713905081	713910951	5870	False	1830.750000	2713	91.220750	210	7909	4	chr6B.!!$F12	7699
3	TraesCS6A01G411900	chr6B	713458200	713463408	5208	False	1691.750000	2900	90.936000	557	8159	4	chr6B.!!$F6	7602
4	TraesCS6A01G411900	chr6B	713943419	713948297	4878	False	1594.250000	2538	89.348250	383	7872	4	chr6B.!!$F13	7489
5	TraesCS6A01G411900	chr6B	713677444	713682017	4573	False	1402.000000	2318	84.034500	4550	7909	2	chr6B.!!$F9	3359
6	TraesCS6A01G411900	chr6B	713768012	713773100	5088	False	1300.333333	2194	83.671667	918	7829	3	chr6B.!!$F10	6911
7	TraesCS6A01G411900	chr6B	713821161	713827796	6635	False	1253.666667	2266	85.817667	9	7902	3	chr6B.!!$F11	7893
8	TraesCS6A01G411900	chr6B	713755231	713756574	1343	False	1168.000000	1168	82.701000	795	2136	1	chr6B.!!$F3	1341
9	TraesCS6A01G411900	chr6B	713342955	713346886	3931	False	919.500000	1251	80.198500	1253	5922	2	chr6B.!!$F5	4669
10	TraesCS6A01G411900	chr6B	713493457	713501216	7759	False	814.000000	2364	88.692600	210	7909	5	chr6B.!!$F7	7699
11	TraesCS6A01G411900	chr6B	713668694	713670204	1510	False	626.500000	1020	82.844000	490	2052	2	chr6B.!!$F8	1562
12	TraesCS6A01G411900	chr6B	713871830	713872410	580	False	422.000000	422	80.034000	4783	5365	1	chr6B.!!$F4	582
13	TraesCS6A01G411900	chr6D	464682870	464684147	1277	False	1847.000000	1847	92.879000	2579	3846	1	chr6D.!!$F9	1267
14	TraesCS6A01G411900	chr6D	159518039	159519299	1260	False	1786.000000	1786	92.254000	2579	3846	1	chr6D.!!$F4	1267
15	TraesCS6A01G411900	chr6D	343674279	343675555	1276	False	1729.000000	1729	91.236000	2579	3846	1	chr6D.!!$F7	1267
16	TraesCS6A01G411900	chr6D	86021012	86022235	1223	True	1679.000000	1679	91.538000	2631	3848	1	chr6D.!!$R3	1217
17	TraesCS6A01G411900	chr6D	77829917	77831166	1249	False	1657.000000	1657	90.588000	2581	3845	1	chr6D.!!$F3	1264
18	TraesCS6A01G411900	chr6D	926856	928124	1268	True	1655.000000	1655	90.312000	2579	3846	1	chr6D.!!$R1	1267
19	TraesCS6A01G411900	chr6D	6551363	6552674	1311	False	1572.000000	1572	88.830000	2577	3849	1	chr6D.!!$F1	1272
20	TraesCS6A01G411900	chr6D	263265314	263266707	1393	True	1555.000000	1555	86.838000	6183	7576	1	chr6D.!!$R4	1393
21	TraesCS6A01G411900	chr6D	467855372	467862952	7580	False	1282.500000	2545	83.521500	277	8611	4	chr6D.!!$F10	8334
22	TraesCS6A01G411900	chr3D	47338873	47340147	1274	False	1908.000000	1908	93.711000	2577	3854	1	chr3D.!!$F1	1277
23	TraesCS6A01G411900	chr3D	335199672	335200719	1047	True	1502.000000	1502	92.674000	2577	3617	1	chr3D.!!$R1	1040
24	TraesCS6A01G411900	chr4D	469601470	469602687	1217	True	1821.000000	1821	93.776000	2589	3799	1	chr4D.!!$R5	1210
25	TraesCS6A01G411900	chr2D	318416570	318417845	1275	True	1777.000000	1777	91.959000	2587	3852	1	chr2D.!!$R1	1265
26	TraesCS6A01G411900	chr5A	276114693	276115953	1260	True	1681.000000	1681	90.701000	2579	3846	1	chr5A.!!$R1	1267
27	TraesCS6A01G411900	chr1A	585985388	585986648	1260	False	1674.000000	1674	90.661000	2577	3848	1	chr1A.!!$F1	1271
28	TraesCS6A01G411900	chr3A	56388880	56390100	1220	False	1631.000000	1631	90.776000	2576	3799	1	chr3A.!!$F1	1223
29	TraesCS6A01G411900	chr3A	656113293	656114556	1263	False	1596.000000	1596	89.449000	2576	3844	1	chr3A.!!$F2	1268
30	TraesCS6A01G411900	chrUn	96336726	96337602	876	True	1155.000000	1155	90.551000	2579	3456	1	chrUn.!!$R3	877

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
538	3246	0.116342	TGGTCCTCAGCAGTTCCCTA	59.884	55.0	0.00	0.00	0.00	3.53	F
1540	4501	0.036164	TGCAAACCAGTACGATGGCT	59.964	50.0	1.12	0.00	44.80	4.75	F
1902	4869	0.179045	GCCCCAGTTACGCAGATGAT	60.179	55.0	0.00	0.00	0.00	2.45	F
2989	6041	0.681733	TCAGCAAGCTCCTCGTCTTT	59.318	50.0	0.00	0.00	0.00	2.52	F
3895	7522	0.034089	CCCACTTAGGCCTCCTTTGG	60.034	60.0	9.68	12.21	34.61	3.28	F
3902	7529	0.113190	AGGCCTCCTTTGGTTTGGAG	59.887	55.0	0.00	0.00	46.91	3.86	F
4546	9814	0.977395	ACTCTTTCAAGGACGGAGGG	59.023	55.0	0.00	0.00	0.00	4.30	F
6111	12980	0.726827	TAACGACCTAGGTGTACGCG	59.273	55.0	22.10	18.47	0.00	6.01	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2296	5294	0.958382	GCGAAGTAACCCATGTGCCA	60.958	55.0	0.00	0.00	0.00	4.92	R
3243	6295	0.393537	CCTCTCCTGCGGCTTTTCAT	60.394	55.0	0.00	0.00	0.00	2.57	R
3883	7510	0.113190	CTCCAAACCAAAGGAGGCCT	59.887	55.0	3.86	3.86	46.11	5.19	R
4533	9801	0.406750	TGTACTCCCTCCGTCCTTGA	59.593	55.0	0.00	0.00	0.00	3.02	R
4907	10199	0.623723	TTCTAGTTCCATGCCCCCAC	59.376	55.0	0.00	0.00	0.00	4.61	R
5868	12705	1.308998	GGCCTACCATTCATCCAACG	58.691	55.0	0.00	0.00	35.26	4.10	R
6115	12984	0.246635	TCTCGCTCAGTTTACAGGGC	59.753	55.0	0.00	0.00	0.00	5.19	R
7991	14896	0.330267	TCGGATGGGGAAGGGAAAAC	59.670	55.0	0.00	0.00	0.00	2.43	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
52	53	2.030371	CTGCTGCCTCATGAGTCTAGA	58.970	52.381	21.11	1.83	0.00	2.43
86	87	8.970691	ATGGAATTTGAAAATAAGTTCACGAG	57.029	30.769	0.00	0.00	37.24	4.18
100	101	5.869350	AGTTCACGAGTTTGAGAAAAGTTG	58.131	37.500	0.00	0.00	0.00	3.16
234	674	0.394565	CCGAAGATAAGGAGCAGGGG	59.605	60.000	0.00	0.00	0.00	4.79
256	696	1.839894	CCCTAGGTCCATTGGGCTC	59.160	63.158	8.29	0.00	32.49	4.70
261	701	2.586792	GTCCATTGGGCTCGAGCT	59.413	61.111	34.46	14.35	41.70	4.09
281	862	6.706270	CGAGCTAACCAAACCATATACTTCAT	59.294	38.462	0.00	0.00	0.00	2.57
289	870	7.392113	ACCAAACCATATACTTCATCGTTGAAA	59.608	33.333	10.00	0.00	41.22	2.69
333	915	2.225041	TGCACTCACTCACTAGGGTACT	60.225	50.000	0.00	0.00	0.00	2.73
334	916	2.164624	GCACTCACTCACTAGGGTACTG	59.835	54.545	0.00	0.00	0.00	2.74
335	917	3.422796	CACTCACTCACTAGGGTACTGT	58.577	50.000	0.00	0.00	0.00	3.55
336	918	4.586884	CACTCACTCACTAGGGTACTGTA	58.413	47.826	0.00	0.00	0.00	2.74
337	919	4.395542	CACTCACTCACTAGGGTACTGTAC	59.604	50.000	9.46	9.46	0.00	2.90
344	926	6.013032	ACTCACTAGGGTACTGTACAAGTCTA	60.013	42.308	18.79	12.51	40.56	2.59
356	938	3.290948	ACAAGTCTAGGCACAAACCAA	57.709	42.857	0.00	0.00	0.00	3.67
362	944	3.185797	GTCTAGGCACAAACCAAGTAACG	59.814	47.826	0.00	0.00	0.00	3.18
368	3063	1.595794	ACAAACCAAGTAACGTCGCAG	59.404	47.619	0.00	0.00	0.00	5.18
369	3064	1.595794	CAAACCAAGTAACGTCGCAGT	59.404	47.619	0.00	0.00	0.00	4.40
375	3070	3.120060	CCAAGTAACGTCGCAGTAGTAGT	60.120	47.826	0.00	0.00	0.00	2.73
376	3071	3.736530	AGTAACGTCGCAGTAGTAGTG	57.263	47.619	0.17	0.17	0.00	2.74
377	3072	2.417933	AGTAACGTCGCAGTAGTAGTGG	59.582	50.000	7.11	0.00	0.00	4.00
378	3073	1.242076	AACGTCGCAGTAGTAGTGGT	58.758	50.000	7.11	0.00	0.00	4.16
379	3074	2.099141	ACGTCGCAGTAGTAGTGGTA	57.901	50.000	7.11	0.00	0.00	3.25
380	3075	1.734465	ACGTCGCAGTAGTAGTGGTAC	59.266	52.381	7.11	0.00	0.00	3.34
381	3076	1.063174	CGTCGCAGTAGTAGTGGTACC	59.937	57.143	4.43	4.43	0.00	3.34
412	3107	2.517450	GGCACGCTCGCATGTCTAC	61.517	63.158	0.00	0.00	0.00	2.59
420	3115	2.186076	CTCGCATGTCTACGTCTTTCC	58.814	52.381	0.00	0.00	0.00	3.13
462	3167	8.141268	GGAAAATCTGTAGGAATTTTTGTGACA	58.859	33.333	0.00	0.00	28.29	3.58
503	3211	4.335647	CTGCCCGTCAAGGTGGCT	62.336	66.667	0.00	0.00	45.56	4.75
538	3246	0.116342	TGGTCCTCAGCAGTTCCCTA	59.884	55.000	0.00	0.00	0.00	3.53
629	3342	4.839668	AAAATTTGCAAGGCGTAGTGTA	57.160	36.364	0.00	0.00	0.00	2.90
630	3343	4.419522	AAATTTGCAAGGCGTAGTGTAG	57.580	40.909	0.00	0.00	0.00	2.74
741	3576	3.323243	CAAGTACTGGTGGTAACTTCCG	58.677	50.000	0.00	0.00	34.80	4.30
743	3578	1.001181	GTACTGGTGGTAACTTCCGCA	59.999	52.381	0.00	0.00	39.49	5.69
838	3704	0.459585	CCGTAATATCCGATGGGGCG	60.460	60.000	0.00	0.00	34.94	6.13
842	3708	2.167398	AATATCCGATGGGGCGTCCG	62.167	60.000	0.00	0.00	38.76	4.79
853	3720	1.601166	GGGCGTCCGGCTTTTAATAT	58.399	50.000	13.05	0.00	42.94	1.28
908	3776	6.904498	ACACTCTCAATAGTATCGCTGTATC	58.096	40.000	0.00	0.00	0.00	2.24
909	3777	6.072397	ACACTCTCAATAGTATCGCTGTATCC	60.072	42.308	0.00	0.00	0.00	2.59
913	3781	6.887002	TCTCAATAGTATCGCTGTATCCATCT	59.113	38.462	0.00	0.00	0.00	2.90
919	3790	9.719355	ATAGTATCGCTGTATCCATCTATCTAG	57.281	37.037	0.00	0.00	0.00	2.43
950	3840	3.078891	TGCTATTGCCACCATAACACA	57.921	42.857	0.00	0.00	38.71	3.72
959	3849	3.430929	GCCACCATAACACAAAACCAACA	60.431	43.478	0.00	0.00	0.00	3.33
973	3869	2.927028	ACCAACAACCAACACCTAGAC	58.073	47.619	0.00	0.00	0.00	2.59
989	3885	4.887190	ACCAAACTTGCCCGCCGT	62.887	61.111	0.00	0.00	0.00	5.68
1030	3926	1.067250	TGCTTTTTCTTGGCGTGCC	59.933	52.632	3.30	3.30	0.00	5.01
1254	4205	3.118223	GGCTCTTTCTGGGCAATAGTACT	60.118	47.826	0.00	0.00	0.00	2.73
1277	4228	3.193691	ACTGAGGTCCTTGAGTTGTATCG	59.806	47.826	0.00	0.00	0.00	2.92
1324	4275	2.618053	CTATCCACTTCAACGTCACCC	58.382	52.381	0.00	0.00	0.00	4.61
1326	4277	0.391597	TCCACTTCAACGTCACCCTC	59.608	55.000	0.00	0.00	0.00	4.30
1341	4292	3.009033	TCACCCTCAAACCAGGTATGAAG	59.991	47.826	0.00	0.00	30.98	3.02
1347	4298	3.650942	TCAAACCAGGTATGAAGGACACT	59.349	43.478	0.00	0.00	0.00	3.55
1398	4352	6.380079	AAAGGTGTTATGACCTCTGAAGAT	57.620	37.500	0.00	0.00	46.29	2.40
1411	4365	5.221722	ACCTCTGAAGATACAAGCTTGTTCA	60.222	40.000	35.20	28.45	42.35	3.18
1540	4501	0.036164	TGCAAACCAGTACGATGGCT	59.964	50.000	1.12	0.00	44.80	4.75
1541	4502	0.447801	GCAAACCAGTACGATGGCTG	59.552	55.000	1.12	1.29	44.80	4.85
1651	4615	3.930336	TCAGCACTATCAAGTCAAGGTG	58.070	45.455	0.00	0.00	31.97	4.00
1677	4644	9.080097	GAAGGGCTCTCTAATAGTATCAAAGTA	57.920	37.037	0.00	0.00	0.00	2.24
1690	4657	3.576078	TCAAAGTATTCATGGCGGGAT	57.424	42.857	0.00	0.00	0.00	3.85
1696	4663	4.755411	AGTATTCATGGCGGGATATTACG	58.245	43.478	0.00	0.00	0.00	3.18
1792	4759	3.755112	TCACGGATCAACCAAACTGTA	57.245	42.857	0.00	0.00	38.90	2.74
1841	4808	1.446907	GCTTGTAGCACTGACAGCAT	58.553	50.000	1.25	0.00	41.89	3.79
1852	4819	1.404391	CTGACAGCATTTGCCTGGATC	59.596	52.381	0.00	0.00	43.38	3.36
1853	4820	1.272037	TGACAGCATTTGCCTGGATCA	60.272	47.619	0.00	0.00	43.38	2.92
1878	4845	3.896479	GCTGGAGGCTACTTGTGC	58.104	61.111	0.00	0.00	38.06	4.57
1886	4853	2.746277	CTACTTGTGCCGGTGCCC	60.746	66.667	1.90	0.00	36.33	5.36
1902	4869	0.179045	GCCCCAGTTACGCAGATGAT	60.179	55.000	0.00	0.00	0.00	2.45
1994	4969	9.850628	AAAAATATTCAACTGACATGTCATGAG	57.149	29.630	28.00	18.83	39.13	2.90
2031	5009	4.550577	TGCACGCTTGAATATTATGGTG	57.449	40.909	0.00	0.00	0.00	4.17
2033	5011	4.035091	TGCACGCTTGAATATTATGGTGAC	59.965	41.667	0.00	0.00	0.00	3.67
2063	5041	6.468956	GCACCAATGTTGTCGATTAATACAAG	59.531	38.462	4.39	0.00	36.33	3.16
2090	5069	1.796459	TCTCTGTTTAAAGTTCGCCGC	59.204	47.619	0.00	0.00	0.00	6.53
2182	5168	2.991250	AGCACCAATTGTATTCTCGCT	58.009	42.857	4.43	0.00	0.00	4.93
2211	5197	5.105997	ACTCAAAATTGCCTGTCATAGAAGC	60.106	40.000	0.00	0.00	0.00	3.86
2232	5220	1.266718	TCAAAAATCAGCACGCACCTC	59.733	47.619	0.00	0.00	0.00	3.85
2296	5294	9.701098	TTTTCGATTATACTTGTTCACTAGTGT	57.299	29.630	21.99	4.76	34.09	3.55
2297	5295	8.683550	TTCGATTATACTTGTTCACTAGTGTG	57.316	34.615	21.99	10.80	45.07	3.82
2348	5355	4.820716	GCGGTCTCTACTAGTGGAGAATTA	59.179	45.833	32.96	14.42	46.41	1.40
2357	5364	8.475639	TCTACTAGTGGAGAATTATTGACAACC	58.524	37.037	4.58	0.00	0.00	3.77
2371	5404	6.697641	ATTGACAACCTTCTACTCCCTTTA	57.302	37.500	0.00	0.00	0.00	1.85
2376	5409	5.189934	ACAACCTTCTACTCCCTTTAGATGG	59.810	44.000	8.89	8.89	42.60	3.51
2393	5426	5.402054	AGATGGGAATATAAGTTGGGCAA	57.598	39.130	0.00	0.00	0.00	4.52
2395	5428	6.384603	AGATGGGAATATAAGTTGGGCAAAT	58.615	36.000	0.00	0.00	0.00	2.32
2404	5437	3.942130	AGTTGGGCAAATGTTCTTAGC	57.058	42.857	0.00	0.00	0.00	3.09
2494	5527	6.934645	TCGTCCACTGAAGTTTCTAATCATTT	59.065	34.615	0.00	0.00	0.00	2.32
2496	5529	8.076178	CGTCCACTGAAGTTTCTAATCATTTTT	58.924	33.333	0.00	0.00	0.00	1.94
2524	5557	6.258507	TGTGATATAGTACACATGCTTTGCTG	59.741	38.462	0.00	0.00	41.19	4.41
2539	5572	3.529634	TTGCTGGTTAAATTGACGACG	57.470	42.857	0.00	0.00	0.00	5.12
2546	5579	7.061634	GCTGGTTAAATTGACGACGTAATATC	58.938	38.462	0.00	0.00	0.00	1.63
2552	5585	1.268692	TGACGACGTAATATCCCGTGC	60.269	52.381	0.00	0.00	37.44	5.34
2563	5596	1.640917	ATCCCGTGCCCGACTTATAT	58.359	50.000	0.00	0.00	35.63	0.86
2565	5598	1.069513	TCCCGTGCCCGACTTATATTG	59.930	52.381	0.00	0.00	35.63	1.90
2571	5604	1.892209	CCCGACTTATATTGCCACCC	58.108	55.000	0.00	0.00	0.00	4.61
2615	5649	3.652539	GACCCATTTCGTCCGCGGA	62.653	63.158	27.28	27.28	38.89	5.54
2748	5793	2.333938	CGGACACAAGACGGACGT	59.666	61.111	0.00	0.00	0.00	4.34
2816	5867	2.220586	TGGATTCACACCCTCGCCA	61.221	57.895	0.00	0.00	0.00	5.69
2989	6041	0.681733	TCAGCAAGCTCCTCGTCTTT	59.318	50.000	0.00	0.00	0.00	2.52
3180	6232	1.151450	CACACCACCAAGGCTTCCT	59.849	57.895	0.00	0.00	43.14	3.36
3255	6307	1.351430	CTCGTCGATGAAAAGCCGCA	61.351	55.000	8.98	0.00	0.00	5.69
3298	6350	0.948623	CGCTGGTTCGACATGTTGGA	60.949	55.000	13.27	0.77	0.00	3.53
3632	6709	2.472909	GCGCGCTAGGCCATTTTCT	61.473	57.895	26.67	0.00	38.94	2.52
3831	6991	2.998279	CGTCCGTTTAGGTCGGCCT	61.998	63.158	15.76	15.76	45.53	5.19
3880	7507	1.600023	TTTCGTCAATGTCCACCCAC	58.400	50.000	0.00	0.00	0.00	4.61
3881	7508	0.762418	TTCGTCAATGTCCACCCACT	59.238	50.000	0.00	0.00	0.00	4.00
3882	7509	0.762418	TCGTCAATGTCCACCCACTT	59.238	50.000	0.00	0.00	0.00	3.16
3883	7510	1.972075	TCGTCAATGTCCACCCACTTA	59.028	47.619	0.00	0.00	0.00	2.24
3884	7511	2.028476	TCGTCAATGTCCACCCACTTAG	60.028	50.000	0.00	0.00	0.00	2.18
3885	7512	2.711542	GTCAATGTCCACCCACTTAGG	58.288	52.381	0.00	0.00	37.03	2.69
3886	7513	1.004277	TCAATGTCCACCCACTTAGGC	59.996	52.381	0.00	0.00	35.39	3.93
3887	7514	0.331616	AATGTCCACCCACTTAGGCC	59.668	55.000	0.00	0.00	35.39	5.19
3888	7515	0.550147	ATGTCCACCCACTTAGGCCT	60.550	55.000	11.78	11.78	35.39	5.19
3889	7516	1.198759	TGTCCACCCACTTAGGCCTC	61.199	60.000	9.68	0.00	35.39	4.70
3890	7517	1.615424	TCCACCCACTTAGGCCTCC	60.615	63.158	9.68	0.00	35.39	4.30
3891	7518	1.616628	CCACCCACTTAGGCCTCCT	60.617	63.158	9.68	0.00	37.71	3.69
3892	7519	1.208165	CCACCCACTTAGGCCTCCTT	61.208	60.000	9.68	0.00	34.61	3.36
3893	7520	0.698818	CACCCACTTAGGCCTCCTTT	59.301	55.000	9.68	0.00	34.61	3.11
3894	7521	0.698818	ACCCACTTAGGCCTCCTTTG	59.301	55.000	9.68	2.06	34.61	2.77
3895	7522	0.034089	CCCACTTAGGCCTCCTTTGG	60.034	60.000	9.68	12.21	34.61	3.28
3896	7523	0.698818	CCACTTAGGCCTCCTTTGGT	59.301	55.000	9.68	0.00	34.61	3.67
3897	7524	1.075536	CCACTTAGGCCTCCTTTGGTT	59.924	52.381	9.68	0.00	34.61	3.67
3898	7525	2.490902	CCACTTAGGCCTCCTTTGGTTT	60.491	50.000	9.68	0.00	34.61	3.27
3899	7526	2.558359	CACTTAGGCCTCCTTTGGTTTG	59.442	50.000	9.68	0.00	34.61	2.93
3900	7527	2.171003	CTTAGGCCTCCTTTGGTTTGG	58.829	52.381	9.68	0.00	34.61	3.28
3901	7528	1.451449	TAGGCCTCCTTTGGTTTGGA	58.549	50.000	9.68	0.00	34.61	3.53
3902	7529	0.113190	AGGCCTCCTTTGGTTTGGAG	59.887	55.000	0.00	0.00	46.91	3.86
3909	7536	5.551305	CTCCTTTGGTTTGGAGGAATTTT	57.449	39.130	0.00	0.00	44.44	1.82
3910	7537	6.664428	CTCCTTTGGTTTGGAGGAATTTTA	57.336	37.500	0.00	0.00	44.44	1.52
3911	7538	6.664428	TCCTTTGGTTTGGAGGAATTTTAG	57.336	37.500	0.00	0.00	36.67	1.85
3912	7539	6.377912	TCCTTTGGTTTGGAGGAATTTTAGA	58.622	36.000	0.00	0.00	36.67	2.10
3913	7540	6.493458	TCCTTTGGTTTGGAGGAATTTTAGAG	59.507	38.462	0.00	0.00	36.67	2.43
3914	7541	6.295292	CCTTTGGTTTGGAGGAATTTTAGAGG	60.295	42.308	0.00	0.00	32.11	3.69
3915	7542	5.592587	TGGTTTGGAGGAATTTTAGAGGA	57.407	39.130	0.00	0.00	0.00	3.71
3916	7543	6.152638	TGGTTTGGAGGAATTTTAGAGGAT	57.847	37.500	0.00	0.00	0.00	3.24
3917	7544	7.278724	TGGTTTGGAGGAATTTTAGAGGATA	57.721	36.000	0.00	0.00	0.00	2.59
3918	7545	7.346471	TGGTTTGGAGGAATTTTAGAGGATAG	58.654	38.462	0.00	0.00	0.00	2.08
3919	7546	6.773200	GGTTTGGAGGAATTTTAGAGGATAGG	59.227	42.308	0.00	0.00	0.00	2.57
3920	7547	7.366551	GGTTTGGAGGAATTTTAGAGGATAGGA	60.367	40.741	0.00	0.00	0.00	2.94
3921	7548	7.954539	TTGGAGGAATTTTAGAGGATAGGAT	57.045	36.000	0.00	0.00	0.00	3.24
3922	7549	7.954539	TGGAGGAATTTTAGAGGATAGGATT	57.045	36.000	0.00	0.00	0.00	3.01
3923	7550	7.978925	TGGAGGAATTTTAGAGGATAGGATTC	58.021	38.462	0.00	0.00	0.00	2.52
3924	7551	7.796637	TGGAGGAATTTTAGAGGATAGGATTCT	59.203	37.037	0.00	0.00	0.00	2.40
3925	7552	8.664992	GGAGGAATTTTAGAGGATAGGATTCTT	58.335	37.037	0.00	0.00	0.00	2.52
3957	7584	6.553953	TTTTTCCTTTAGAGCCCTTTGTTT	57.446	33.333	0.00	0.00	0.00	2.83
3958	7585	5.784578	TTTCCTTTAGAGCCCTTTGTTTC	57.215	39.130	0.00	0.00	0.00	2.78
3959	7586	4.447138	TCCTTTAGAGCCCTTTGTTTCA	57.553	40.909	0.00	0.00	0.00	2.69
3960	7587	4.998051	TCCTTTAGAGCCCTTTGTTTCAT	58.002	39.130	0.00	0.00	0.00	2.57
3961	7588	6.134535	TCCTTTAGAGCCCTTTGTTTCATA	57.865	37.500	0.00	0.00	0.00	2.15
3962	7589	6.180472	TCCTTTAGAGCCCTTTGTTTCATAG	58.820	40.000	0.00	0.00	0.00	2.23
3963	7590	5.358160	CCTTTAGAGCCCTTTGTTTCATAGG	59.642	44.000	0.45	0.45	33.40	2.57
3964	7591	5.772393	TTAGAGCCCTTTGTTTCATAGGA	57.228	39.130	7.59	0.00	35.14	2.94
3965	7592	4.657814	AGAGCCCTTTGTTTCATAGGAA	57.342	40.909	7.59	0.00	35.14	3.36
3966	7593	5.198602	AGAGCCCTTTGTTTCATAGGAAT	57.801	39.130	7.59	0.00	35.14	3.01
3967	7594	4.952335	AGAGCCCTTTGTTTCATAGGAATG	59.048	41.667	7.59	0.00	35.14	2.67
3968	7595	4.026052	AGCCCTTTGTTTCATAGGAATGG	58.974	43.478	7.59	0.00	35.14	3.16
3969	7596	4.023291	GCCCTTTGTTTCATAGGAATGGA	58.977	43.478	7.59	0.00	35.14	3.41
3970	7597	4.651045	GCCCTTTGTTTCATAGGAATGGAT	59.349	41.667	7.59	0.00	35.14	3.41
3971	7598	5.129320	GCCCTTTGTTTCATAGGAATGGATT	59.871	40.000	7.59	0.00	35.14	3.01
3972	7599	6.683861	GCCCTTTGTTTCATAGGAATGGATTC	60.684	42.308	7.59	0.00	35.14	2.52
4006	7633	3.493767	GGATTGGTTCCTATCCTCCAC	57.506	52.381	19.71	0.00	41.78	4.02
4007	7634	2.777692	GGATTGGTTCCTATCCTCCACA	59.222	50.000	19.71	0.00	41.78	4.17
4008	7635	3.395941	GGATTGGTTCCTATCCTCCACAT	59.604	47.826	19.71	0.00	41.78	3.21
4009	7636	4.141158	GGATTGGTTCCTATCCTCCACATT	60.141	45.833	19.71	0.00	41.78	2.71
4010	7637	4.946160	TTGGTTCCTATCCTCCACATTT	57.054	40.909	0.00	0.00	0.00	2.32
4011	7638	4.503714	TGGTTCCTATCCTCCACATTTC	57.496	45.455	0.00	0.00	0.00	2.17
4012	7639	3.849574	TGGTTCCTATCCTCCACATTTCA	59.150	43.478	0.00	0.00	0.00	2.69
4013	7640	4.478317	TGGTTCCTATCCTCCACATTTCAT	59.522	41.667	0.00	0.00	0.00	2.57
4014	7641	5.669904	TGGTTCCTATCCTCCACATTTCATA	59.330	40.000	0.00	0.00	0.00	2.15
4015	7642	6.183361	TGGTTCCTATCCTCCACATTTCATAG	60.183	42.308	0.00	0.00	0.00	2.23
4016	7643	6.234177	GTTCCTATCCTCCACATTTCATAGG	58.766	44.000	0.00	0.00	35.93	2.57
4017	7644	5.726560	TCCTATCCTCCACATTTCATAGGA	58.273	41.667	2.01	2.01	39.61	2.94
4018	7645	6.150332	TCCTATCCTCCACATTTCATAGGAA	58.850	40.000	3.47	0.00	39.17	3.36
4019	7646	6.619437	TCCTATCCTCCACATTTCATAGGAAA	59.381	38.462	4.85	4.85	46.36	3.13
4020	7647	7.128728	TCCTATCCTCCACATTTCATAGGAAAA	59.871	37.037	6.65	0.00	45.52	2.29
4021	7648	7.946776	CCTATCCTCCACATTTCATAGGAAAAT	59.053	37.037	6.65	0.00	45.52	1.82
4024	7651	9.713684	ATCCTCCACATTTCATAGGAAAATAAA	57.286	29.630	6.65	0.00	45.52	1.40
4025	7652	9.540538	TCCTCCACATTTCATAGGAAAATAAAA	57.459	29.630	6.65	0.00	45.52	1.52
4039	7666	8.512966	AGGAAAATAAAAATGAGCCTAGACTC	57.487	34.615	0.00	0.00	37.19	3.36
4048	7675	4.908601	TGAGCCTAGACTCATGGAAAAA	57.091	40.909	4.41	0.00	41.72	1.94
4049	7676	5.441718	TGAGCCTAGACTCATGGAAAAAT	57.558	39.130	4.41	0.00	41.72	1.82
4050	7677	5.819991	TGAGCCTAGACTCATGGAAAAATT	58.180	37.500	4.41	0.00	41.72	1.82
4051	7678	5.882557	TGAGCCTAGACTCATGGAAAAATTC	59.117	40.000	4.41	0.00	41.72	2.17
4052	7679	5.298026	GAGCCTAGACTCATGGAAAAATTCC	59.702	44.000	0.51	2.12	42.14	3.01
4053	7680	6.858466	GAGCCTAGACTCATGGAAAAATTCCT	60.858	42.308	10.28	0.00	42.21	3.36
4054	7681	8.285329	GAGCCTAGACTCATGGAAAAATTCCTT	61.285	40.741	10.28	1.58	42.21	3.36
4064	7691	5.984233	GGAAAAATTCCTTTGGTGTCAAC	57.016	39.130	1.86	0.00	46.57	3.18
4065	7692	4.814234	GGAAAAATTCCTTTGGTGTCAACC	59.186	41.667	1.86	0.00	46.57	3.77
4082	7709	5.356882	TCAACCAAATGACATCTCGTTTC	57.643	39.130	0.00	0.00	33.97	2.78
4083	7710	4.215399	TCAACCAAATGACATCTCGTTTCC	59.785	41.667	0.00	0.00	33.97	3.13
4084	7711	4.021102	ACCAAATGACATCTCGTTTCCT	57.979	40.909	0.00	0.00	33.97	3.36
4085	7712	5.160607	ACCAAATGACATCTCGTTTCCTA	57.839	39.130	0.00	0.00	33.97	2.94
4086	7713	5.745227	ACCAAATGACATCTCGTTTCCTAT	58.255	37.500	0.00	0.00	33.97	2.57
4087	7714	6.180472	ACCAAATGACATCTCGTTTCCTATT	58.820	36.000	0.00	0.00	33.97	1.73
4088	7715	6.316390	ACCAAATGACATCTCGTTTCCTATTC	59.684	38.462	0.00	0.00	33.97	1.75
4089	7716	6.238484	CCAAATGACATCTCGTTTCCTATTCC	60.238	42.308	0.00	0.00	33.97	3.01
4090	7717	5.878406	ATGACATCTCGTTTCCTATTCCT	57.122	39.130	0.00	0.00	0.00	3.36
4091	7718	6.978674	ATGACATCTCGTTTCCTATTCCTA	57.021	37.500	0.00	0.00	0.00	2.94
4092	7719	6.145338	TGACATCTCGTTTCCTATTCCTAC	57.855	41.667	0.00	0.00	0.00	3.18
4093	7720	5.892119	TGACATCTCGTTTCCTATTCCTACT	59.108	40.000	0.00	0.00	0.00	2.57
4094	7721	6.039493	TGACATCTCGTTTCCTATTCCTACTC	59.961	42.308	0.00	0.00	0.00	2.59
4095	7722	5.892119	ACATCTCGTTTCCTATTCCTACTCA	59.108	40.000	0.00	0.00	0.00	3.41
4096	7723	6.551601	ACATCTCGTTTCCTATTCCTACTCAT	59.448	38.462	0.00	0.00	0.00	2.90
4097	7724	7.724506	ACATCTCGTTTCCTATTCCTACTCATA	59.275	37.037	0.00	0.00	0.00	2.15
4098	7725	7.747155	TCTCGTTTCCTATTCCTACTCATAG	57.253	40.000	0.00	0.00	0.00	2.23
4115	7742	9.853555	CTACTCATAGGATTTGAGATACATGTC	57.146	37.037	0.00	0.00	42.63	3.06
4116	7743	8.255111	ACTCATAGGATTTGAGATACATGTCA	57.745	34.615	0.00	0.00	42.63	3.58
4117	7744	8.878211	ACTCATAGGATTTGAGATACATGTCAT	58.122	33.333	0.00	0.00	42.63	3.06
4118	7745	9.368674	CTCATAGGATTTGAGATACATGTCATC	57.631	37.037	0.00	4.47	42.63	2.92
4119	7746	9.097946	TCATAGGATTTGAGATACATGTCATCT	57.902	33.333	0.00	9.42	35.43	2.90
4120	7747	9.368674	CATAGGATTTGAGATACATGTCATCTC	57.631	37.037	24.04	24.04	45.76	2.75
4129	7756	8.755696	GAGATACATGTCATCTCATTTCCTAC	57.244	38.462	24.95	8.46	45.17	3.18
4130	7757	8.255111	AGATACATGTCATCTCATTTCCTACA	57.745	34.615	0.00	0.00	0.00	2.74
4131	7758	8.708378	AGATACATGTCATCTCATTTCCTACAA	58.292	33.333	0.00	0.00	0.00	2.41
4132	7759	9.330063	GATACATGTCATCTCATTTCCTACAAA	57.670	33.333	0.00	0.00	0.00	2.83
4133	7760	9.685276	ATACATGTCATCTCATTTCCTACAAAA	57.315	29.630	0.00	0.00	0.00	2.44
4134	7761	8.585471	ACATGTCATCTCATTTCCTACAAAAT	57.415	30.769	0.00	0.00	0.00	1.82
4135	7762	9.028284	ACATGTCATCTCATTTCCTACAAAATT	57.972	29.630	0.00	0.00	0.00	1.82
4136	7763	9.512435	CATGTCATCTCATTTCCTACAAAATTC	57.488	33.333	0.00	0.00	0.00	2.17
4137	7764	8.055279	TGTCATCTCATTTCCTACAAAATTCC	57.945	34.615	0.00	0.00	0.00	3.01
4138	7765	7.890127	TGTCATCTCATTTCCTACAAAATTCCT	59.110	33.333	0.00	0.00	0.00	3.36
4139	7766	9.396022	GTCATCTCATTTCCTACAAAATTCCTA	57.604	33.333	0.00	0.00	0.00	2.94
4143	7770	9.408648	TCTCATTTCCTACAAAATTCCTATTCC	57.591	33.333	0.00	0.00	0.00	3.01
4144	7771	9.413734	CTCATTTCCTACAAAATTCCTATTCCT	57.586	33.333	0.00	0.00	0.00	3.36
4147	7774	8.726870	TTTCCTACAAAATTCCTATTCCTACG	57.273	34.615	0.00	0.00	0.00	3.51
4148	7775	7.664552	TCCTACAAAATTCCTATTCCTACGA	57.335	36.000	0.00	0.00	0.00	3.43
4149	7776	8.258850	TCCTACAAAATTCCTATTCCTACGAT	57.741	34.615	0.00	0.00	0.00	3.73
4150	7777	9.370930	TCCTACAAAATTCCTATTCCTACGATA	57.629	33.333	0.00	0.00	0.00	2.92
4151	7778	9.991906	CCTACAAAATTCCTATTCCTACGATAA	57.008	33.333	0.00	0.00	0.00	1.75
4154	7781	9.503399	ACAAAATTCCTATTCCTACGATAATCC	57.497	33.333	0.00	0.00	0.00	3.01
4155	7782	9.726438	CAAAATTCCTATTCCTACGATAATCCT	57.274	33.333	0.00	0.00	0.00	3.24
4159	7786	8.763984	TTCCTATTCCTACGATAATCCTATCC	57.236	38.462	0.00	0.00	31.68	2.59
4160	7787	8.115490	TCCTATTCCTACGATAATCCTATCCT	57.885	38.462	0.00	0.00	31.68	3.24
4161	7788	9.234086	TCCTATTCCTACGATAATCCTATCCTA	57.766	37.037	0.00	0.00	31.68	2.94
4165	7792	9.937876	ATTCCTACGATAATCCTATCCTATGAA	57.062	33.333	0.00	0.00	31.68	2.57
4166	7793	8.749026	TCCTACGATAATCCTATCCTATGAAC	57.251	38.462	0.00	0.00	31.68	3.18
4167	7794	7.778853	TCCTACGATAATCCTATCCTATGAACC	59.221	40.741	0.00	0.00	31.68	3.62
4168	7795	7.560262	CCTACGATAATCCTATCCTATGAACCA	59.440	40.741	0.00	0.00	31.68	3.67
4169	7796	7.792364	ACGATAATCCTATCCTATGAACCAA	57.208	36.000	0.00	0.00	31.68	3.67
4170	7797	8.202461	ACGATAATCCTATCCTATGAACCAAA	57.798	34.615	0.00	0.00	31.68	3.28
4171	7798	8.656806	ACGATAATCCTATCCTATGAACCAAAA	58.343	33.333	0.00	0.00	31.68	2.44
4172	7799	9.155975	CGATAATCCTATCCTATGAACCAAAAG	57.844	37.037	0.00	0.00	31.68	2.27
4175	7802	6.500589	TCCTATCCTATGAACCAAAAGAGG	57.499	41.667	0.00	0.00	0.00	3.69
4176	7803	5.066593	CCTATCCTATGAACCAAAAGAGGC	58.933	45.833	0.00	0.00	0.00	4.70
4177	7804	3.366052	TCCTATGAACCAAAAGAGGCC	57.634	47.619	0.00	0.00	0.00	5.19
4202	7829	1.847737	TGGGTCTGGTTTACCACAAGT	59.152	47.619	0.00	0.00	42.01	3.16
4203	7830	3.047115	TGGGTCTGGTTTACCACAAGTA	58.953	45.455	0.00	0.00	42.01	2.24
4204	7831	3.181452	TGGGTCTGGTTTACCACAAGTAC	60.181	47.826	0.00	0.00	42.01	2.73
4207	7834	3.811497	GTCTGGTTTACCACAAGTACCAC	59.189	47.826	0.00	0.00	42.01	4.16
4222	8137	4.056050	AGTACCACTAGCACGTTTCTTTG	58.944	43.478	0.00	0.00	0.00	2.77
4231	9495	4.359706	AGCACGTTTCTTTGAAATGTTCC	58.640	39.130	13.26	8.90	0.00	3.62
4232	9496	3.489416	GCACGTTTCTTTGAAATGTTCCC	59.511	43.478	13.26	4.38	0.00	3.97
4249	9514	5.676552	TGTTCCCGCTAGCTATTAAATTGA	58.323	37.500	13.93	0.00	0.00	2.57
4252	9517	7.386848	TGTTCCCGCTAGCTATTAAATTGATAC	59.613	37.037	13.93	0.00	0.00	2.24
4297	9565	8.934023	AAAGTATCTCTAGTCTATTCCCTCTG	57.066	38.462	0.00	0.00	0.00	3.35
4298	9566	7.642094	AGTATCTCTAGTCTATTCCCTCTGT	57.358	40.000	0.00	0.00	0.00	3.41
4299	9567	7.686434	AGTATCTCTAGTCTATTCCCTCTGTC	58.314	42.308	0.00	0.00	0.00	3.51
4300	9568	5.313280	TCTCTAGTCTATTCCCTCTGTCC	57.687	47.826	0.00	0.00	0.00	4.02
4301	9569	4.979039	TCTCTAGTCTATTCCCTCTGTCCT	59.021	45.833	0.00	0.00	0.00	3.85
4302	9570	5.433712	TCTCTAGTCTATTCCCTCTGTCCTT	59.566	44.000	0.00	0.00	0.00	3.36
4303	9571	6.620267	TCTCTAGTCTATTCCCTCTGTCCTTA	59.380	42.308	0.00	0.00	0.00	2.69
4304	9572	7.129038	TCTCTAGTCTATTCCCTCTGTCCTTAA	59.871	40.741	0.00	0.00	0.00	1.85
4305	9573	7.649715	TCTAGTCTATTCCCTCTGTCCTTAAA	58.350	38.462	0.00	0.00	0.00	1.52
4306	9574	8.120538	TCTAGTCTATTCCCTCTGTCCTTAAAA	58.879	37.037	0.00	0.00	0.00	1.52
4307	9575	7.569599	AGTCTATTCCCTCTGTCCTTAAAAA	57.430	36.000	0.00	0.00	0.00	1.94
4333	9601	9.594478	AAGTGTACTTTTAATTTTGTTGGAAGG	57.406	29.630	0.00	0.00	30.82	3.46
4334	9602	8.755028	AGTGTACTTTTAATTTTGTTGGAAGGT	58.245	29.630	0.00	0.00	0.00	3.50
4335	9603	9.027129	GTGTACTTTTAATTTTGTTGGAAGGTC	57.973	33.333	0.00	0.00	0.00	3.85
4336	9604	8.750298	TGTACTTTTAATTTTGTTGGAAGGTCA	58.250	29.630	0.00	0.00	0.00	4.02
4337	9605	9.589111	GTACTTTTAATTTTGTTGGAAGGTCAA	57.411	29.630	0.00	0.00	0.00	3.18
4339	9607	8.941977	ACTTTTAATTTTGTTGGAAGGTCAAAC	58.058	29.630	0.00	0.00	32.08	2.93
4340	9608	9.161629	CTTTTAATTTTGTTGGAAGGTCAAACT	57.838	29.630	0.00	0.00	32.08	2.66
4343	9611	9.974980	TTAATTTTGTTGGAAGGTCAAACTATC	57.025	29.630	0.00	0.00	32.08	2.08
4344	9612	7.839680	ATTTTGTTGGAAGGTCAAACTATCT	57.160	32.000	0.00	0.00	32.08	1.98
4345	9613	6.877611	TTTGTTGGAAGGTCAAACTATCTC	57.122	37.500	0.00	0.00	0.00	2.75
4346	9614	5.560722	TGTTGGAAGGTCAAACTATCTCA	57.439	39.130	0.00	0.00	0.00	3.27
4347	9615	5.935945	TGTTGGAAGGTCAAACTATCTCAA	58.064	37.500	0.00	0.00	0.00	3.02
4348	9616	6.361433	TGTTGGAAGGTCAAACTATCTCAAA	58.639	36.000	0.00	0.00	0.00	2.69
4349	9617	6.831353	TGTTGGAAGGTCAAACTATCTCAAAA	59.169	34.615	0.00	0.00	0.00	2.44
4350	9618	7.505585	TGTTGGAAGGTCAAACTATCTCAAAAT	59.494	33.333	0.00	0.00	0.00	1.82
4351	9619	8.360390	GTTGGAAGGTCAAACTATCTCAAAATT	58.640	33.333	0.00	0.00	0.00	1.82
4352	9620	8.477419	TGGAAGGTCAAACTATCTCAAAATTT	57.523	30.769	0.00	0.00	0.00	1.82
4353	9621	8.359642	TGGAAGGTCAAACTATCTCAAAATTTG	58.640	33.333	0.00	0.00	0.00	2.32
4354	9622	8.576442	GGAAGGTCAAACTATCTCAAAATTTGA	58.424	33.333	8.25	8.25	37.03	2.69
4359	9627	9.185192	GTCAAACTATCTCAAAATTTGACCAAG	57.815	33.333	14.32	4.90	46.95	3.61
4360	9628	8.912988	TCAAACTATCTCAAAATTTGACCAAGT	58.087	29.630	4.03	5.48	35.05	3.16
4361	9629	9.533253	CAAACTATCTCAAAATTTGACCAAGTT	57.467	29.630	4.03	10.61	34.03	2.66
4363	9631	9.533253	AACTATCTCAAAATTTGACCAAGTTTG	57.467	29.630	4.03	5.99	35.46	2.93
4364	9632	8.695456	ACTATCTCAAAATTTGACCAAGTTTGT	58.305	29.630	4.03	0.00	35.46	2.83
4365	9633	7.775397	ATCTCAAAATTTGACCAAGTTTGTG	57.225	32.000	4.03	9.07	35.46	3.33
4366	9634	5.580297	TCTCAAAATTTGACCAAGTTTGTGC	59.420	36.000	4.03	0.00	35.46	4.57
4367	9635	5.240891	TCAAAATTTGACCAAGTTTGTGCA	58.759	33.333	4.03	0.00	34.08	4.57
4368	9636	5.121454	TCAAAATTTGACCAAGTTTGTGCAC	59.879	36.000	10.75	10.75	34.08	4.57
4369	9637	3.883830	ATTTGACCAAGTTTGTGCACA	57.116	38.095	17.42	17.42	0.00	4.57
4370	9638	3.667497	TTTGACCAAGTTTGTGCACAA	57.333	38.095	27.96	27.96	0.00	3.33
4371	9639	3.667497	TTGACCAAGTTTGTGCACAAA	57.333	38.095	35.10	35.10	42.90	2.83
4372	9640	3.883830	TGACCAAGTTTGTGCACAAAT	57.116	38.095	39.08	26.83	46.12	2.32
4373	9641	4.991153	TGACCAAGTTTGTGCACAAATA	57.009	36.364	39.08	22.05	46.12	1.40
4374	9642	5.528043	TGACCAAGTTTGTGCACAAATAT	57.472	34.783	39.08	29.51	46.12	1.28
4375	9643	6.641169	TGACCAAGTTTGTGCACAAATATA	57.359	33.333	39.08	21.00	46.12	0.86
4376	9644	7.225784	TGACCAAGTTTGTGCACAAATATAT	57.774	32.000	39.08	26.11	46.12	0.86
4377	9645	7.312154	TGACCAAGTTTGTGCACAAATATATC	58.688	34.615	39.08	30.57	46.12	1.63
4378	9646	7.040132	TGACCAAGTTTGTGCACAAATATATCA	60.040	33.333	39.08	32.16	46.12	2.15
4379	9647	7.665690	ACCAAGTTTGTGCACAAATATATCAA	58.334	30.769	39.08	18.54	46.12	2.57
4380	9648	8.313292	ACCAAGTTTGTGCACAAATATATCAAT	58.687	29.630	39.08	18.37	46.12	2.57
4381	9649	8.597227	CCAAGTTTGTGCACAAATATATCAATG	58.403	33.333	39.08	26.88	46.12	2.82
4382	9650	7.760131	AGTTTGTGCACAAATATATCAATGC	57.240	32.000	39.08	24.86	46.12	3.56
4383	9651	7.549839	AGTTTGTGCACAAATATATCAATGCT	58.450	30.769	39.08	26.35	46.12	3.79
4384	9652	8.036575	AGTTTGTGCACAAATATATCAATGCTT	58.963	29.630	39.08	12.95	46.12	3.91
4385	9653	7.758613	TTGTGCACAAATATATCAATGCTTG	57.241	32.000	29.36	4.50	34.18	4.01
4386	9654	6.865411	TGTGCACAAATATATCAATGCTTGT	58.135	32.000	19.28	5.01	34.18	3.16
4387	9655	6.752815	TGTGCACAAATATATCAATGCTTGTG	59.247	34.615	19.28	16.30	44.02	3.33
4388	9656	6.974048	GTGCACAAATATATCAATGCTTGTGA	59.026	34.615	21.60	9.87	43.95	3.58
4389	9657	7.488792	GTGCACAAATATATCAATGCTTGTGAA	59.511	33.333	21.60	13.27	43.95	3.18
4390	9658	8.033626	TGCACAAATATATCAATGCTTGTGAAA	58.966	29.630	21.60	11.10	43.95	2.69
4391	9659	8.323140	GCACAAATATATCAATGCTTGTGAAAC	58.677	33.333	21.60	7.50	43.95	2.78
4392	9660	8.810427	CACAAATATATCAATGCTTGTGAAACC	58.190	33.333	15.85	0.00	43.95	3.27
4393	9661	8.530311	ACAAATATATCAATGCTTGTGAAACCA	58.470	29.630	0.00	0.00	34.36	3.67
4394	9662	9.368674	CAAATATATCAATGCTTGTGAAACCAA	57.631	29.630	0.00	0.00	34.36	3.67
4395	9663	9.941325	AAATATATCAATGCTTGTGAAACCAAA	57.059	25.926	0.00	0.00	34.36	3.28
4399	9667	6.647334	TCAATGCTTGTGAAACCAAATAGA	57.353	33.333	0.00	0.00	34.36	1.98
4400	9668	7.230849	TCAATGCTTGTGAAACCAAATAGAT	57.769	32.000	0.00	0.00	34.36	1.98
4401	9669	8.347004	TCAATGCTTGTGAAACCAAATAGATA	57.653	30.769	0.00	0.00	34.36	1.98
4402	9670	8.970020	TCAATGCTTGTGAAACCAAATAGATAT	58.030	29.630	0.00	0.00	34.36	1.63
4406	9674	9.625747	TGCTTGTGAAACCAAATAGATATATGA	57.374	29.630	0.00	0.00	34.36	2.15
4407	9675	9.884465	GCTTGTGAAACCAAATAGATATATGAC	57.116	33.333	0.00	0.00	34.36	3.06
4520	9788	8.716646	AAAGTTTGACTTTCCAATAAAGTTGG	57.283	30.769	4.75	0.38	44.47	3.77
4521	9789	7.654022	AGTTTGACTTTCCAATAAAGTTGGA	57.346	32.000	5.45	5.45	46.08	3.53
4531	9799	7.074653	TCCAATAAAGTTGGAAGTACACTCT	57.925	36.000	7.03	0.00	44.90	3.24
4532	9800	7.514721	TCCAATAAAGTTGGAAGTACACTCTT	58.485	34.615	7.03	0.00	44.90	2.85
4533	9801	7.996644	TCCAATAAAGTTGGAAGTACACTCTTT	59.003	33.333	7.03	0.00	44.90	2.52
4534	9802	8.290325	CCAATAAAGTTGGAAGTACACTCTTTC	58.710	37.037	0.52	0.00	42.06	2.62
4535	9803	8.836413	CAATAAAGTTGGAAGTACACTCTTTCA	58.164	33.333	0.00	0.00	31.87	2.69
4536	9804	8.974060	ATAAAGTTGGAAGTACACTCTTTCAA	57.026	30.769	0.00	0.00	39.65	2.69
4537	9805	6.927294	AAGTTGGAAGTACACTCTTTCAAG	57.073	37.500	0.00	0.00	41.68	3.02
4538	9806	5.368989	AGTTGGAAGTACACTCTTTCAAGG	58.631	41.667	0.00	0.00	41.68	3.61
4539	9807	5.130477	AGTTGGAAGTACACTCTTTCAAGGA	59.870	40.000	0.00	0.00	41.68	3.36
4540	9808	4.957296	TGGAAGTACACTCTTTCAAGGAC	58.043	43.478	0.00	0.00	30.93	3.85
4541	9809	3.988517	GGAAGTACACTCTTTCAAGGACG	59.011	47.826	0.00	0.00	0.00	4.79
4542	9810	3.662247	AGTACACTCTTTCAAGGACGG	57.338	47.619	0.00	0.00	0.00	4.79
4543	9811	3.228453	AGTACACTCTTTCAAGGACGGA	58.772	45.455	0.00	0.00	0.00	4.69
4544	9812	2.821991	ACACTCTTTCAAGGACGGAG	57.178	50.000	0.00	0.00	0.00	4.63
4545	9813	1.344763	ACACTCTTTCAAGGACGGAGG	59.655	52.381	0.00	0.00	0.00	4.30
4546	9814	0.977395	ACTCTTTCAAGGACGGAGGG	59.023	55.000	0.00	0.00	0.00	4.30
4547	9815	1.267121	CTCTTTCAAGGACGGAGGGA	58.733	55.000	0.00	0.00	0.00	4.20
4548	9816	1.205893	CTCTTTCAAGGACGGAGGGAG	59.794	57.143	0.00	0.00	0.00	4.30
4549	9817	0.977395	CTTTCAAGGACGGAGGGAGT	59.023	55.000	0.00	0.00	0.00	3.85
4550	9818	2.176889	CTTTCAAGGACGGAGGGAGTA	58.823	52.381	0.00	0.00	0.00	2.59
4551	9819	1.553706	TTCAAGGACGGAGGGAGTAC	58.446	55.000	0.00	0.00	0.00	2.73
4596	9864	6.426328	CCATGCTCCTAATGTAACTTCTCATC	59.574	42.308	0.00	0.00	0.00	2.92
4650	9921	2.785540	TTCCATCTGCAGCATACACA	57.214	45.000	9.47	0.00	0.00	3.72
4907	10199	2.861935	CGGTGGTAAGTTATACAAGCGG	59.138	50.000	6.68	0.00	38.33	5.52
5196	10497	2.158871	AGGTAAACACGCTCCAACTTCA	60.159	45.455	0.00	0.00	0.00	3.02
5202	10503	3.740115	ACACGCTCCAACTTCAATTACT	58.260	40.909	0.00	0.00	0.00	2.24
5203	10504	4.134563	ACACGCTCCAACTTCAATTACTT	58.865	39.130	0.00	0.00	0.00	2.24
5487	12273	6.746120	AGGTACATTACGCTAAATGACTAGG	58.254	40.000	13.08	0.00	38.84	3.02
5490	12276	4.809426	ACATTACGCTAAATGACTAGGCAC	59.191	41.667	0.00	0.00	38.84	5.01
5499	12289	1.153745	GACTAGGCACGCACCAGAG	60.154	63.158	0.00	0.00	0.00	3.35
5510	12302	1.337260	CGCACCAGAGCTAGAGTTTGT	60.337	52.381	0.00	0.00	0.00	2.83
5594	12415	2.224606	GCTGGATACCACCATCATGTG	58.775	52.381	0.00	0.00	39.34	3.21
5660	12482	6.851222	ATACATGCTGATAAACTTCCGAAG	57.149	37.500	6.59	6.59	0.00	3.79
5717	12545	2.091541	TCGCCTCATGGAAATGGAAAC	58.908	47.619	0.00	0.00	34.57	2.78
5725	12556	6.148150	CCTCATGGAAATGGAAACAAAATGTG	59.852	38.462	0.00	0.00	39.05	3.21
5912	12781	2.290960	GGTGACCTAGCTTTGGTTCCAT	60.291	50.000	11.63	0.00	38.03	3.41
5913	12782	2.749621	GTGACCTAGCTTTGGTTCCATG	59.250	50.000	11.63	0.00	38.03	3.66
5919	12788	5.010282	CCTAGCTTTGGTTCCATGTTTACT	58.990	41.667	0.00	0.00	0.00	2.24
5920	12789	6.177610	CCTAGCTTTGGTTCCATGTTTACTA	58.822	40.000	0.00	0.00	0.00	1.82
5921	12790	5.959618	AGCTTTGGTTCCATGTTTACTAC	57.040	39.130	0.00	0.00	0.00	2.73
5922	12791	5.631119	AGCTTTGGTTCCATGTTTACTACT	58.369	37.500	0.00	0.00	0.00	2.57
5923	12792	6.775708	AGCTTTGGTTCCATGTTTACTACTA	58.224	36.000	0.00	0.00	0.00	1.82
5924	12793	6.653740	AGCTTTGGTTCCATGTTTACTACTAC	59.346	38.462	0.00	0.00	0.00	2.73
5925	12794	6.653740	GCTTTGGTTCCATGTTTACTACTACT	59.346	38.462	0.00	0.00	0.00	2.57
5926	12795	7.820872	GCTTTGGTTCCATGTTTACTACTACTA	59.179	37.037	0.00	0.00	0.00	1.82
5927	12796	9.148104	CTTTGGTTCCATGTTTACTACTACTAC	57.852	37.037	0.00	0.00	0.00	2.73
5928	12797	7.174107	TGGTTCCATGTTTACTACTACTACC	57.826	40.000	0.00	0.00	0.00	3.18
5929	12798	6.955851	TGGTTCCATGTTTACTACTACTACCT	59.044	38.462	0.00	0.00	0.00	3.08
5930	12799	7.123247	TGGTTCCATGTTTACTACTACTACCTC	59.877	40.741	0.00	0.00	0.00	3.85
5931	12800	7.417229	GGTTCCATGTTTACTACTACTACCTCC	60.417	44.444	0.00	0.00	0.00	4.30
5932	12801	5.824624	TCCATGTTTACTACTACTACCTCCG	59.175	44.000	0.00	0.00	0.00	4.63
5933	12802	5.591877	CCATGTTTACTACTACTACCTCCGT	59.408	44.000	0.00	0.00	0.00	4.69
5934	12803	6.096001	CCATGTTTACTACTACTACCTCCGTT	59.904	42.308	0.00	0.00	0.00	4.44
5935	12804	7.363268	CCATGTTTACTACTACTACCTCCGTTT	60.363	40.741	0.00	0.00	0.00	3.60
5936	12805	7.145932	TGTTTACTACTACTACCTCCGTTTC	57.854	40.000	0.00	0.00	0.00	2.78
5937	12806	6.714810	TGTTTACTACTACTACCTCCGTTTCA	59.285	38.462	0.00	0.00	0.00	2.69
5938	12807	6.992063	TTACTACTACTACCTCCGTTTCAG	57.008	41.667	0.00	0.00	0.00	3.02
5939	12808	4.916183	ACTACTACTACCTCCGTTTCAGT	58.084	43.478	0.00	0.00	0.00	3.41
5940	12809	5.320277	ACTACTACTACCTCCGTTTCAGTT	58.680	41.667	0.00	0.00	0.00	3.16
5941	12810	5.772169	ACTACTACTACCTCCGTTTCAGTTT	59.228	40.000	0.00	0.00	0.00	2.66
5942	12811	6.942576	ACTACTACTACCTCCGTTTCAGTTTA	59.057	38.462	0.00	0.00	0.00	2.01
5943	12812	6.018589	ACTACTACCTCCGTTTCAGTTTAC	57.981	41.667	0.00	0.00	0.00	2.01
5944	12813	4.942761	ACTACCTCCGTTTCAGTTTACA	57.057	40.909	0.00	0.00	0.00	2.41
5945	12814	5.280654	ACTACCTCCGTTTCAGTTTACAA	57.719	39.130	0.00	0.00	0.00	2.41
5946	12815	5.295152	ACTACCTCCGTTTCAGTTTACAAG	58.705	41.667	0.00	0.00	0.00	3.16
5947	12816	4.146745	ACCTCCGTTTCAGTTTACAAGT	57.853	40.909	0.00	0.00	0.00	3.16
5948	12817	4.124970	ACCTCCGTTTCAGTTTACAAGTC	58.875	43.478	0.00	0.00	0.00	3.01
5949	12818	3.497262	CCTCCGTTTCAGTTTACAAGTCC	59.503	47.826	0.00	0.00	0.00	3.85
5950	12819	4.377897	CTCCGTTTCAGTTTACAAGTCCT	58.622	43.478	0.00	0.00	0.00	3.85
5951	12820	4.124238	TCCGTTTCAGTTTACAAGTCCTG	58.876	43.478	0.00	0.00	0.00	3.86
5952	12821	3.303791	CCGTTTCAGTTTACAAGTCCTGC	60.304	47.826	0.00	0.00	0.00	4.85
5953	12822	3.311322	CGTTTCAGTTTACAAGTCCTGCA	59.689	43.478	0.00	0.00	0.00	4.41
5954	12823	4.598062	GTTTCAGTTTACAAGTCCTGCAC	58.402	43.478	0.00	0.00	0.00	4.57
5955	12824	2.479837	TCAGTTTACAAGTCCTGCACG	58.520	47.619	0.00	0.00	0.00	5.34
5956	12825	2.159014	TCAGTTTACAAGTCCTGCACGT	60.159	45.455	0.00	0.00	0.00	4.49
5957	12826	3.068448	TCAGTTTACAAGTCCTGCACGTA	59.932	43.478	0.00	0.00	0.00	3.57
5958	12827	3.994392	CAGTTTACAAGTCCTGCACGTAT	59.006	43.478	0.00	0.00	0.00	3.06
5959	12828	5.047872	TCAGTTTACAAGTCCTGCACGTATA	60.048	40.000	0.00	0.00	0.00	1.47
5960	12829	5.061808	CAGTTTACAAGTCCTGCACGTATAC	59.938	44.000	0.00	0.00	0.00	1.47
5961	12830	2.667473	ACAAGTCCTGCACGTATACC	57.333	50.000	0.00	0.00	0.00	2.73
5962	12831	2.176889	ACAAGTCCTGCACGTATACCT	58.823	47.619	0.00	0.00	0.00	3.08
5963	12832	3.359033	ACAAGTCCTGCACGTATACCTA	58.641	45.455	0.00	0.00	0.00	3.08
5964	12833	3.380637	ACAAGTCCTGCACGTATACCTAG	59.619	47.826	0.00	0.00	0.00	3.02
5965	12834	3.572632	AGTCCTGCACGTATACCTAGA	57.427	47.619	0.00	0.00	0.00	2.43
5966	12835	4.101645	AGTCCTGCACGTATACCTAGAT	57.898	45.455	0.00	0.00	0.00	1.98
5967	12836	4.471548	AGTCCTGCACGTATACCTAGATT	58.528	43.478	0.00	0.00	0.00	2.40
5968	12837	4.278669	AGTCCTGCACGTATACCTAGATTG	59.721	45.833	0.00	0.00	0.00	2.67
5969	12838	4.037684	GTCCTGCACGTATACCTAGATTGT	59.962	45.833	0.00	0.00	0.00	2.71
5970	12839	4.277672	TCCTGCACGTATACCTAGATTGTC	59.722	45.833	0.00	0.00	0.00	3.18
5971	12840	4.037565	CCTGCACGTATACCTAGATTGTCA	59.962	45.833	0.00	0.00	0.00	3.58
5972	12841	5.451381	CCTGCACGTATACCTAGATTGTCAA	60.451	44.000	0.00	0.00	0.00	3.18
5973	12842	6.156748	TGCACGTATACCTAGATTGTCAAT	57.843	37.500	0.00	0.00	0.00	2.57
5974	12843	6.578944	TGCACGTATACCTAGATTGTCAATT	58.421	36.000	0.00	0.00	0.00	2.32
5975	12844	7.045416	TGCACGTATACCTAGATTGTCAATTT	58.955	34.615	0.00	0.00	0.00	1.82
5976	12845	7.551262	TGCACGTATACCTAGATTGTCAATTTT	59.449	33.333	0.00	0.00	0.00	1.82
5977	12846	9.037737	GCACGTATACCTAGATTGTCAATTTTA	57.962	33.333	0.00	0.00	0.00	1.52
5979	12848	9.538508	ACGTATACCTAGATTGTCAATTTTACC	57.461	33.333	0.00	0.00	0.00	2.85
5980	12849	9.537192	CGTATACCTAGATTGTCAATTTTACCA	57.463	33.333	0.00	0.00	0.00	3.25
5983	12852	7.881775	ACCTAGATTGTCAATTTTACCATCC	57.118	36.000	0.00	0.00	0.00	3.51
5984	12853	7.643123	ACCTAGATTGTCAATTTTACCATCCT	58.357	34.615	0.00	0.00	0.00	3.24
5985	12854	8.778059	ACCTAGATTGTCAATTTTACCATCCTA	58.222	33.333	0.00	0.00	0.00	2.94
5986	12855	9.627123	CCTAGATTGTCAATTTTACCATCCTAA	57.373	33.333	0.00	0.00	0.00	2.69
6037	12906	9.783081	ATACCTTTTAAAAGTAGAAACTCCGAA	57.217	29.630	23.04	0.00	33.75	4.30
6038	12907	8.151141	ACCTTTTAAAAGTAGAAACTCCGAAG	57.849	34.615	23.04	7.98	33.75	3.79
6039	12908	7.772292	ACCTTTTAAAAGTAGAAACTCCGAAGT	59.228	33.333	23.04	8.52	33.75	3.01
6040	12909	8.618677	CCTTTTAAAAGTAGAAACTCCGAAGTT	58.381	33.333	23.04	0.00	39.62	2.66
6055	12924	9.457436	AACTCCGAAGTTTATGTTGGTATATTT	57.543	29.630	0.00	0.00	43.28	1.40
6056	12925	9.457436	ACTCCGAAGTTTATGTTGGTATATTTT	57.543	29.630	0.00	0.00	28.74	1.82
6096	12965	8.932791	ACTTGTACTAGGTTGATCAAATTAACG	58.067	33.333	10.35	0.00	30.27	3.18
6097	12966	9.146984	CTTGTACTAGGTTGATCAAATTAACGA	57.853	33.333	10.35	3.67	30.27	3.85
6098	12967	8.470040	TGTACTAGGTTGATCAAATTAACGAC	57.530	34.615	10.35	4.41	30.27	4.34
6099	12968	6.980051	ACTAGGTTGATCAAATTAACGACC	57.020	37.500	10.35	5.23	37.15	4.79
6100	12969	6.708285	ACTAGGTTGATCAAATTAACGACCT	58.292	36.000	10.35	12.75	45.55	3.85
6101	12970	7.844009	ACTAGGTTGATCAAATTAACGACCTA	58.156	34.615	10.35	13.20	42.98	3.08
6103	12972	6.113411	AGGTTGATCAAATTAACGACCTAGG	58.887	40.000	10.35	7.41	42.98	3.02
6104	12973	5.878669	GGTTGATCAAATTAACGACCTAGGT	59.121	40.000	16.26	16.26	34.88	3.08
6105	12974	6.183360	GGTTGATCAAATTAACGACCTAGGTG	60.183	42.308	22.10	14.16	34.88	4.00
6106	12975	6.045072	TGATCAAATTAACGACCTAGGTGT	57.955	37.500	22.10	14.85	0.00	4.16
6107	12976	7.172868	TGATCAAATTAACGACCTAGGTGTA	57.827	36.000	22.10	5.78	0.00	2.90
6108	12977	7.037438	TGATCAAATTAACGACCTAGGTGTAC	58.963	38.462	22.10	3.75	0.00	2.90
6109	12978	5.401550	TCAAATTAACGACCTAGGTGTACG	58.598	41.667	22.10	19.26	0.00	3.67
6110	12979	2.919666	TTAACGACCTAGGTGTACGC	57.080	50.000	22.10	2.89	0.00	4.42
6111	12980	0.726827	TAACGACCTAGGTGTACGCG	59.273	55.000	22.10	18.47	0.00	6.01
6112	12981	2.277756	CGACCTAGGTGTACGCGC	60.278	66.667	22.10	1.21	0.00	6.86
6113	12982	2.879907	GACCTAGGTGTACGCGCA	59.120	61.111	22.10	0.00	0.00	6.09
6114	12983	1.515736	GACCTAGGTGTACGCGCAC	60.516	63.158	22.10	3.42	38.56	5.34
6116	12985	3.245315	CTAGGTGTACGCGCACGC	61.245	66.667	14.59	14.59	45.53	5.34
6122	12991	4.781959	GTACGCGCACGCCCTGTA	62.782	66.667	5.73	3.39	45.53	2.74
6123	12992	4.053526	TACGCGCACGCCCTGTAA	62.054	61.111	5.73	0.00	45.53	2.41
6124	12993	3.570621	TACGCGCACGCCCTGTAAA	62.571	57.895	5.73	0.00	45.53	2.01
6125	12994	4.439472	CGCGCACGCCCTGTAAAC	62.439	66.667	8.75	0.00	37.98	2.01
6126	12995	3.047877	GCGCACGCCCTGTAAACT	61.048	61.111	0.30	0.00	34.56	2.66
6127	12996	2.860293	CGCACGCCCTGTAAACTG	59.140	61.111	0.00	0.00	0.00	3.16
6128	12997	1.666553	CGCACGCCCTGTAAACTGA	60.667	57.895	0.00	0.00	0.00	3.41
6129	12998	1.626654	CGCACGCCCTGTAAACTGAG	61.627	60.000	0.00	0.00	0.00	3.35
6130	12999	1.912371	GCACGCCCTGTAAACTGAGC	61.912	60.000	0.00	0.00	0.00	4.26
6131	13000	3.474806	CGCCCTGTAAACTGAGCG	58.525	61.111	1.92	1.92	37.39	5.03
6132	13001	1.080093	CGCCCTGTAAACTGAGCGA	60.080	57.895	9.67	0.00	46.03	4.93
6133	13002	1.078759	CGCCCTGTAAACTGAGCGAG	61.079	60.000	9.67	0.00	46.03	5.03
6134	13003	0.246635	GCCCTGTAAACTGAGCGAGA	59.753	55.000	0.00	0.00	0.00	4.04
6135	13004	1.737363	GCCCTGTAAACTGAGCGAGAG	60.737	57.143	0.00	0.00	0.00	3.20
6136	13005	1.134965	CCCTGTAAACTGAGCGAGAGG	60.135	57.143	0.00	0.00	0.00	3.69
6139	13008	3.181495	CCTGTAAACTGAGCGAGAGGTAG	60.181	52.174	0.00	0.00	45.11	3.18
6156	13025	7.169982	CGAGAGGTAGTAATTATTTTCAGGCAG	59.830	40.741	0.00	0.00	0.00	4.85
6159	13028	6.889722	AGGTAGTAATTATTTTCAGGCAGCAA	59.110	34.615	0.00	0.00	0.00	3.91
6350	13229	6.626181	CGCAGTCTTCTCTTAGGTAAGTCATT	60.626	42.308	0.00	0.00	34.93	2.57
6449	13337	3.832527	AGGTATCGGAATTGGAATTGGG	58.167	45.455	0.00	0.00	0.00	4.12
6455	13343	2.256306	GGAATTGGAATTGGGTGTGGT	58.744	47.619	0.00	0.00	0.00	4.16
6475	13363	3.632145	GGTCTTGGTGCCATAATACTTGG	59.368	47.826	0.00	0.00	37.31	3.61
6485	13373	5.312178	TGCCATAATACTTGGGCTAGGTATT	59.688	40.000	19.36	19.36	46.53	1.89
6486	13374	5.648092	GCCATAATACTTGGGCTAGGTATTG	59.352	44.000	22.76	11.58	40.51	1.90
6500	13388	4.240881	AGGTATTGTGGCATTCATCAGT	57.759	40.909	0.00	0.00	0.00	3.41
6560	13448	7.667219	AGAGCATACTTCAAGAAAAATCAAGGA	59.333	33.333	0.00	0.00	0.00	3.36
6914	13802	7.117523	GGCACACTATATGATCTTCTTCACATC	59.882	40.741	0.00	0.00	0.00	3.06
7313	14202	2.164422	GGCTCATTACTTTGTGGAAGGC	59.836	50.000	0.00	0.00	39.79	4.35
7370	14259	2.227388	CCAAGTTGCAGAAGAAGCGAAT	59.773	45.455	0.00	0.00	33.85	3.34
7517	14406	5.501156	AGTCAACTTCCTCCCATAAATGAC	58.499	41.667	0.00	0.00	35.95	3.06
7542	14431	0.247736	GATCGAGTCACTTGGGTGCT	59.752	55.000	0.00	0.00	42.72	4.40
7646	14535	8.135382	AGTATAGTCTGGAGCAAGAGTTTTTA	57.865	34.615	0.00	0.00	32.10	1.52
7672	14561	1.375908	CCAGCTTTCCACGCTAGCA	60.376	57.895	16.45	0.00	37.37	3.49
7812	14707	4.328536	ACCATGTAAACGCCTGAATTGTA	58.671	39.130	0.00	0.00	0.00	2.41
7817	14712	5.157781	TGTAAACGCCTGAATTGTATTTGC	58.842	37.500	0.00	0.00	0.00	3.68
7896	14793	5.446741	CGGTGGTGAATAAAGGTATTTCACG	60.447	44.000	8.43	0.00	33.32	4.35
7905	14803	8.582433	AATAAAGGTATTTCACGGTGTTTTTG	57.418	30.769	8.17	0.00	0.00	2.44
7912	14810	6.787085	ATTTCACGGTGTTTTTGTTTTGAA	57.213	29.167	8.17	0.00	0.00	2.69
7913	14811	5.577860	TTCACGGTGTTTTTGTTTTGAAC	57.422	34.783	8.17	0.00	0.00	3.18
8005	14910	2.243810	CGAAATGTTTTCCCTTCCCCA	58.756	47.619	0.00	0.00	0.00	4.96
8052	14957	2.464459	CCGCGAAGGGTGATGCTTC	61.464	63.158	8.23	0.00	39.56	3.86
8059	14964	0.687354	AGGGTGATGCTTCTCGTTGT	59.313	50.000	0.88	0.00	0.00	3.32
8060	14965	1.079503	GGGTGATGCTTCTCGTTGTC	58.920	55.000	0.88	0.00	0.00	3.18
8061	14966	0.716108	GGTGATGCTTCTCGTTGTCG	59.284	55.000	0.88	0.00	38.55	4.35
8064	14969	1.005037	ATGCTTCTCGTTGTCGCCA	60.005	52.632	0.00	0.00	36.96	5.69
8069	14974	4.717629	CTCGTTGTCGCCAGCCGA	62.718	66.667	0.00	0.00	45.15	5.54
8081	14986	0.031857	CCAGCCGATAGAGTGCTCTG	59.968	60.000	11.63	0.00	40.71	3.35
8083	14988	0.754957	AGCCGATAGAGTGCTCTGCT	60.755	55.000	11.63	8.60	40.71	4.24
8084	14989	0.597118	GCCGATAGAGTGCTCTGCTG	60.597	60.000	11.63	2.48	40.71	4.41
8087	14992	0.249826	GATAGAGTGCTCTGCTGGGC	60.250	60.000	8.78	8.78	40.71	5.36
8088	14993	0.979709	ATAGAGTGCTCTGCTGGGCA	60.980	55.000	14.93	14.93	40.71	5.36
8274	16301	4.778427	TGTGTACTTTTCTTTGGGGGTTTT	59.222	37.500	0.00	0.00	0.00	2.43
8275	16302	5.248705	TGTGTACTTTTCTTTGGGGGTTTTT	59.751	36.000	0.00	0.00	0.00	1.94
8276	16303	6.439692	TGTGTACTTTTCTTTGGGGGTTTTTA	59.560	34.615	0.00	0.00	0.00	1.52
8277	16304	6.982141	GTGTACTTTTCTTTGGGGGTTTTTAG	59.018	38.462	0.00	0.00	0.00	1.85
8278	16305	5.623956	ACTTTTCTTTGGGGGTTTTTAGG	57.376	39.130	0.00	0.00	0.00	2.69
8292	16319	5.533903	GGGTTTTTAGGCTAAATAGTAGGCC	59.466	44.000	19.65	11.63	44.38	5.19
8355	16382	9.677567	GCTATGTACAAAAATGAAAAGACTGAA	57.322	29.630	0.00	0.00	0.00	3.02
8442	16469	2.304180	ACTCCCTCTGTCCAGAAATGTG	59.696	50.000	0.00	0.00	36.94	3.21
8455	16484	2.069273	GAAATGTGACGTCTCTGTGGG	58.931	52.381	17.92	0.00	0.00	4.61
8468	16497	5.360591	GTCTCTGTGGGGTACATCTTTATG	58.639	45.833	0.00	0.00	38.92	1.90
8495	16524	1.685765	GGGCAAAATGGGAGGGGAC	60.686	63.158	0.00	0.00	0.00	4.46
8530	16560	1.423921	GAAAAAGGAGGAGGGGTCACA	59.576	52.381	0.00	0.00	0.00	3.58
8539	16569	2.242196	AGGAGGGGTCACATGTAATTGG	59.758	50.000	0.00	0.00	0.00	3.16
8554	16584	1.900501	ATTGGGGATGGGGTGCCATT	61.901	55.000	0.00	0.00	40.78	3.16
8558	16588	0.111253	GGGATGGGGTGCCATTAGAG	59.889	60.000	0.00	0.00	38.41	2.43
8564	16594	0.179081	GGGTGCCATTAGAGGACGAC	60.179	60.000	0.00	0.00	0.00	4.34
8565	16595	0.824759	GGTGCCATTAGAGGACGACT	59.175	55.000	0.00	0.00	0.00	4.18
8566	16596	2.029623	GGTGCCATTAGAGGACGACTA	58.970	52.381	0.00	0.00	0.00	2.59
8567	16597	2.628657	GGTGCCATTAGAGGACGACTAT	59.371	50.000	0.00	0.00	0.00	2.12
8568	16598	3.069729	GGTGCCATTAGAGGACGACTATT	59.930	47.826	0.00	0.00	0.00	1.73
8569	16599	4.443034	GGTGCCATTAGAGGACGACTATTT	60.443	45.833	0.00	0.00	0.00	1.40
8574	16604	6.985059	GCCATTAGAGGACGACTATTTTACTT	59.015	38.462	0.00	0.00	0.00	2.24
8575	16605	7.494952	GCCATTAGAGGACGACTATTTTACTTT	59.505	37.037	0.00	0.00	0.00	2.66
8582	16612	7.621796	AGGACGACTATTTTACTTTCTCCATT	58.378	34.615	0.00	0.00	0.00	3.16
8584	16614	8.175716	GGACGACTATTTTACTTTCTCCATTTG	58.824	37.037	0.00	0.00	0.00	2.32
8601	16631	8.567948	TCTCCATTTGAAAATAAGTGTCTCAAC	58.432	33.333	0.00	0.00	0.00	3.18
8616	16646	6.525121	TGTCTCAACACTTATTTTCAGACG	57.475	37.500	0.00	0.00	33.20	4.18
8617	16647	6.277605	TGTCTCAACACTTATTTTCAGACGA	58.722	36.000	0.00	0.00	33.20	4.20
8618	16648	6.759356	TGTCTCAACACTTATTTTCAGACGAA	59.241	34.615	0.00	0.00	33.20	3.85
8619	16649	7.279090	TGTCTCAACACTTATTTTCAGACGAAA	59.721	33.333	0.00	0.00	39.38	3.46

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
36	37	5.489792	AGTTTTTCTAGACTCATGAGGCA	57.510	39.130	30.08	14.93	39.50	4.75
39	40	9.658799	TCCATTAAGTTTTTCTAGACTCATGAG	57.341	33.333	21.37	21.37	0.00	2.90
83	84	9.270576	CATATTCATCAACTTTTCTCAAACTCG	57.729	33.333	0.00	0.00	0.00	4.18
210	299	1.136305	TGCTCCTTATCTTCGGGTTCG	59.864	52.381	0.00	0.00	37.82	3.95
211	300	2.483889	CCTGCTCCTTATCTTCGGGTTC	60.484	54.545	0.00	0.00	0.00	3.62
234	674	2.203209	CAATGGACCTAGGGCCGC	60.203	66.667	29.30	6.55	0.00	6.53
256	696	6.046593	TGAAGTATATGGTTTGGTTAGCTCG	58.953	40.000	0.00	0.00	0.00	5.03
261	701	8.041919	TCAACGATGAAGTATATGGTTTGGTTA	58.958	33.333	0.00	0.00	30.99	2.85
281	862	1.901464	GGGCTGGGCTTTTCAACGA	60.901	57.895	0.00	0.00	0.00	3.85
289	870	1.381851	CAAAGAGAGGGCTGGGCTT	59.618	57.895	0.00	0.00	0.00	4.35
333	915	3.134985	TGGTTTGTGCCTAGACTTGTACA	59.865	43.478	0.00	0.00	0.00	2.90
334	916	3.735591	TGGTTTGTGCCTAGACTTGTAC	58.264	45.455	0.00	0.00	0.00	2.90
335	917	4.141574	ACTTGGTTTGTGCCTAGACTTGTA	60.142	41.667	0.00	0.00	35.75	2.41
336	918	3.214328	CTTGGTTTGTGCCTAGACTTGT	58.786	45.455	0.00	0.00	34.09	3.16
337	919	3.214328	ACTTGGTTTGTGCCTAGACTTG	58.786	45.455	0.00	0.00	35.75	3.16
344	926	1.944709	GACGTTACTTGGTTTGTGCCT	59.055	47.619	0.00	0.00	0.00	4.75
356	938	2.417933	CCACTACTACTGCGACGTTACT	59.582	50.000	0.00	0.00	0.00	2.24
362	944	2.097142	CAGGTACCACTACTACTGCGAC	59.903	54.545	15.94	0.00	0.00	5.19
368	3063	3.375299	CACGTACCAGGTACCACTACTAC	59.625	52.174	22.14	5.10	35.81	2.73
369	3064	3.263170	TCACGTACCAGGTACCACTACTA	59.737	47.826	22.14	0.73	35.81	1.82
375	3070	1.259609	CCTTCACGTACCAGGTACCA	58.740	55.000	22.14	5.51	35.81	3.25
376	3071	0.533951	CCCTTCACGTACCAGGTACC	59.466	60.000	22.14	2.73	35.81	3.34
377	3072	0.108472	GCCCTTCACGTACCAGGTAC	60.108	60.000	18.85	18.85	35.86	3.34
378	3073	0.542467	TGCCCTTCACGTACCAGGTA	60.542	55.000	0.00	0.00	0.00	3.08
379	3074	1.839747	TGCCCTTCACGTACCAGGT	60.840	57.895	0.00	0.00	0.00	4.00
380	3075	1.375523	GTGCCCTTCACGTACCAGG	60.376	63.158	0.00	0.00	35.76	4.45
381	3076	4.278956	GTGCCCTTCACGTACCAG	57.721	61.111	0.00	0.00	35.76	4.00
420	3115	2.405061	TTCCACACGTACGTCCACCG	62.405	60.000	19.94	9.64	44.03	4.94
462	3167	1.375523	GTGCCAATCGACGGGTCTT	60.376	57.895	4.94	0.00	0.00	3.01
503	3211	2.107552	GGACCATCCAATTAATCCCCGA	59.892	50.000	0.00	0.00	36.28	5.14
538	3246	2.901840	CTTGTGGCCGTGCAGTGT	60.902	61.111	0.00	0.00	0.00	3.55
633	3346	3.433615	GCTGATATGATGGTAGCCGTTTC	59.566	47.826	0.00	0.00	0.00	2.78
684	3514	1.592400	CCTGAGCGGTCGTCACCTTA	61.592	60.000	10.46	0.00	41.17	2.69
699	3530	4.758251	CGTGCATGACCCGCCTGA	62.758	66.667	0.00	0.00	0.00	3.86
838	3704	3.423123	CGATCGCATATTAAAAGCCGGAC	60.423	47.826	5.05	0.00	0.00	4.79
842	3708	4.091424	GCATCGATCGCATATTAAAAGCC	58.909	43.478	11.09	0.00	0.00	4.35
853	3720	0.317020	CTCTGTACGCATCGATCGCA	60.317	55.000	11.09	0.00	0.00	5.10
913	3781	9.770097	GGCAATAGCATCAATAATAGCTAGATA	57.230	33.333	0.00	0.00	42.21	1.98
919	3790	5.183713	TGGTGGCAATAGCATCAATAATAGC	59.816	40.000	0.00	0.00	44.61	2.97
931	3802	4.448537	TTTGTGTTATGGTGGCAATAGC	57.551	40.909	0.00	0.00	41.10	2.97
936	3819	2.388735	TGGTTTTGTGTTATGGTGGCA	58.611	42.857	0.00	0.00	0.00	4.92
950	3840	4.158949	GTCTAGGTGTTGGTTGTTGGTTTT	59.841	41.667	0.00	0.00	0.00	2.43
959	3849	3.945640	AGTTTGGTCTAGGTGTTGGTT	57.054	42.857	0.00	0.00	0.00	3.67
973	3869	4.038080	GACGGCGGGCAAGTTTGG	62.038	66.667	13.24	0.00	0.00	3.28
989	3885	4.193334	CGCTCATCGTGGCTCCGA	62.193	66.667	2.55	2.55	41.73	4.55
1168	4064	4.858680	GAAGCAGCCCGGCCCTAC	62.859	72.222	5.55	0.00	0.00	3.18
1254	4205	4.398358	CGATACAACTCAAGGACCTCAGTA	59.602	45.833	6.51	0.00	0.00	2.74
1277	4228	0.887933	TCCAAGCCAATTTTCTCCGC	59.112	50.000	0.00	0.00	0.00	5.54
1324	4275	4.003648	GTGTCCTTCATACCTGGTTTGAG	58.996	47.826	17.45	12.49	0.00	3.02
1326	4277	4.021102	AGTGTCCTTCATACCTGGTTTG	57.979	45.455	3.84	7.94	0.00	2.93
1341	4292	5.680619	TCCCATGACATGTTATAAGTGTCC	58.319	41.667	20.17	9.26	41.09	4.02
1347	4298	3.181434	GGGCCTCCCATGACATGTTATAA	60.181	47.826	14.26	0.00	44.65	0.98
1398	4352	5.105554	ACAACCAACAATGAACAAGCTTGTA	60.106	36.000	31.31	18.08	41.31	2.41
1411	4365	1.118838	CCCACACCACAACCAACAAT	58.881	50.000	0.00	0.00	0.00	2.71
1540	4501	1.780309	GTATCCCATCCCAACATCCCA	59.220	52.381	0.00	0.00	0.00	4.37
1541	4502	2.065799	AGTATCCCATCCCAACATCCC	58.934	52.381	0.00	0.00	0.00	3.85
1542	4503	2.443255	ACAGTATCCCATCCCAACATCC	59.557	50.000	0.00	0.00	0.00	3.51
1651	4615	7.958088	ACTTTGATACTATTAGAGAGCCCTTC	58.042	38.462	0.00	0.00	0.00	3.46
1677	4644	3.973206	TCGTAATATCCCGCCATGAAT	57.027	42.857	0.00	0.00	0.00	2.57
1681	4648	4.647611	TGAAATTCGTAATATCCCGCCAT	58.352	39.130	0.00	0.00	0.00	4.40
1690	4657	6.274579	TGTCAGCCGTATGAAATTCGTAATA	58.725	36.000	0.00	0.00	35.18	0.98
1696	4663	7.171508	TGAATAGATGTCAGCCGTATGAAATTC	59.828	37.037	0.00	0.00	26.77	2.17
1792	4759	6.395426	TGACATGTTCTTCTGAGCATTTTT	57.605	33.333	0.00	0.00	41.20	1.94
1886	4853	3.443099	TCTCATCATCTGCGTAACTGG	57.557	47.619	0.00	0.00	0.00	4.00
1902	4869	4.866921	CGTCCATAATGTACGGATTCTCA	58.133	43.478	0.00	0.00	33.13	3.27
2016	4991	8.398491	GTGCAAAAGTCACCATAATATTCAAG	57.602	34.615	0.00	0.00	0.00	3.02
2031	5009	2.788786	CGACAACATTGGTGCAAAAGTC	59.211	45.455	0.45	0.00	0.00	3.01
2033	5011	3.077229	TCGACAACATTGGTGCAAAAG	57.923	42.857	0.45	0.00	0.00	2.27
2063	5041	6.414109	GGCGAACTTTAAACAGAGAAGAAAAC	59.586	38.462	0.00	0.00	0.00	2.43
2167	5152	5.578336	TGAGTCTTGAGCGAGAATACAATTG	59.422	40.000	3.24	3.24	0.00	2.32
2182	5168	4.206375	TGACAGGCAATTTTGAGTCTTGA	58.794	39.130	0.00	0.00	31.66	3.02
2211	5197	1.267806	AGGTGCGTGCTGATTTTTGAG	59.732	47.619	0.00	0.00	0.00	3.02
2296	5294	0.958382	GCGAAGTAACCCATGTGCCA	60.958	55.000	0.00	0.00	0.00	4.92
2297	5295	0.958382	TGCGAAGTAACCCATGTGCC	60.958	55.000	0.00	0.00	0.00	5.01
2348	5355	5.584551	AAAGGGAGTAGAAGGTTGTCAAT	57.415	39.130	0.00	0.00	0.00	2.57
2371	5404	5.402054	TTGCCCAACTTATATTCCCATCT	57.598	39.130	0.00	0.00	0.00	2.90
2376	5409	7.112452	AGAACATTTGCCCAACTTATATTCC	57.888	36.000	0.00	0.00	0.00	3.01
2389	5422	5.376854	TCAAAGAGCTAAGAACATTTGCC	57.623	39.130	0.00	0.00	0.00	4.52
2393	5426	8.401490	AGTCAAATCAAAGAGCTAAGAACATT	57.599	30.769	0.00	0.00	0.00	2.71
2395	5428	7.118390	GCTAGTCAAATCAAAGAGCTAAGAACA	59.882	37.037	0.00	0.00	0.00	3.18
2404	5437	6.228273	TGTTTCGCTAGTCAAATCAAAGAG	57.772	37.500	0.00	0.00	0.00	2.85
2449	5482	9.078990	TGGACGATGAATCTTAAGATGTAGTAT	57.921	33.333	18.61	8.81	34.49	2.12
2450	5483	8.350722	GTGGACGATGAATCTTAAGATGTAGTA	58.649	37.037	18.61	4.62	34.49	1.82
2451	5484	7.068839	AGTGGACGATGAATCTTAAGATGTAGT	59.931	37.037	18.61	13.20	34.49	2.73
2452	5485	7.380870	CAGTGGACGATGAATCTTAAGATGTAG	59.619	40.741	18.61	10.49	34.49	2.74
2461	5494	4.543590	ACTTCAGTGGACGATGAATCTT	57.456	40.909	0.00	0.00	35.04	2.40
2465	5498	4.336889	AGAAACTTCAGTGGACGATGAA	57.663	40.909	0.00	0.00	34.41	2.57
2498	5531	6.258727	AGCAAAGCATGTGTACTATATCACAC	59.741	38.462	9.12	9.12	45.26	3.82
2514	5547	4.022416	TCGTCAATTTAACCAGCAAAGCAT	60.022	37.500	0.00	0.00	0.00	3.79
2524	5557	6.346040	CGGGATATTACGTCGTCAATTTAACC	60.346	42.308	0.00	0.00	0.00	2.85
2539	5572	0.677842	AGTCGGGCACGGGATATTAC	59.322	55.000	9.32	0.00	41.39	1.89
2546	5579	1.508632	CAATATAAGTCGGGCACGGG	58.491	55.000	9.32	0.00	41.39	5.28
2552	5585	1.876416	CGGGTGGCAATATAAGTCGGG	60.876	57.143	0.00	0.00	0.00	5.14
2563	5596	1.980052	CTCTTACTCCGGGTGGCAA	59.020	57.895	0.00	0.00	34.14	4.52
2565	5598	2.180159	TTGCTCTTACTCCGGGTGGC	62.180	60.000	0.00	3.85	34.14	5.01
2571	5604	3.313526	CCATTGGAATTGCTCTTACTCCG	59.686	47.826	0.00	0.00	0.00	4.63
2615	5649	4.974989	GCCGACCCAAACCGACGT	62.975	66.667	0.00	0.00	0.00	4.34
2714	5759	2.379634	CGCGCCGACACAAATCAGA	61.380	57.895	0.00	0.00	0.00	3.27
2748	5793	3.529341	AAGATGGCGACCGCACACA	62.529	57.895	16.47	5.57	44.11	3.72
2755	5806	0.744771	GGTGAGGAAAGATGGCGACC	60.745	60.000	0.00	0.00	0.00	4.79
2756	5807	1.084370	CGGTGAGGAAAGATGGCGAC	61.084	60.000	0.00	0.00	0.00	5.19
2916	5968	0.456995	GAGTCGGAGTCAGAAAGCGG	60.457	60.000	7.96	0.00	0.00	5.52
2944	5996	0.677098	CCTTCAGACGTCGGAGGAGA	60.677	60.000	25.27	8.29	0.00	3.71
2989	6041	3.068590	AGAAACGTCGGGTTGAGACTTTA	59.931	43.478	0.00	0.00	39.30	1.85
3180	6232	1.809869	CCATCGCAGAGAAGGACGA	59.190	57.895	0.00	0.00	43.63	4.20
3243	6295	0.393537	CCTCTCCTGCGGCTTTTCAT	60.394	55.000	0.00	0.00	0.00	2.57
3255	6307	3.394836	GGAACAGGCGCCTCTCCT	61.395	66.667	33.31	18.32	0.00	3.69
3285	6337	7.973388	GGATATGAATTTTTCCAACATGTCGAA	59.027	33.333	0.00	1.12	32.63	3.71
3298	6350	3.564225	GCCTCGTCGGGATATGAATTTTT	59.436	43.478	0.00	0.00	0.00	1.94
3523	6597	2.267324	GCTCCCTCCACACTCTGC	59.733	66.667	0.00	0.00	0.00	4.26
3626	6703	2.800736	GCGCGCATGGGAGAAAAT	59.199	55.556	29.10	0.00	0.00	1.82
3627	6704	3.798650	CGCGCGCATGGGAGAAAA	61.799	61.111	32.61	0.00	0.00	2.29
3802	6961	0.170784	AAACGGACGGCGTTTTTGTT	59.829	45.000	16.19	13.63	36.32	2.83
3831	6991	4.689612	AGTCTTTAGAGCAACTCCAACA	57.310	40.909	0.00	0.00	0.00	3.33
3880	7507	2.171003	CCAAACCAAAGGAGGCCTAAG	58.829	52.381	4.42	0.00	31.13	2.18
3881	7508	1.783979	TCCAAACCAAAGGAGGCCTAA	59.216	47.619	4.42	0.00	31.13	2.69
3882	7509	1.354368	CTCCAAACCAAAGGAGGCCTA	59.646	52.381	4.42	0.00	46.11	3.93
3883	7510	0.113190	CTCCAAACCAAAGGAGGCCT	59.887	55.000	3.86	3.86	46.11	5.19
3884	7511	2.658548	CTCCAAACCAAAGGAGGCC	58.341	57.895	0.00	0.00	46.11	5.19
3888	7515	6.377912	TCTAAAATTCCTCCAAACCAAAGGA	58.622	36.000	0.00	0.00	37.42	3.36
3889	7516	6.295292	CCTCTAAAATTCCTCCAAACCAAAGG	60.295	42.308	0.00	0.00	0.00	3.11
3890	7517	6.493458	TCCTCTAAAATTCCTCCAAACCAAAG	59.507	38.462	0.00	0.00	0.00	2.77
3891	7518	6.377912	TCCTCTAAAATTCCTCCAAACCAAA	58.622	36.000	0.00	0.00	0.00	3.28
3892	7519	5.959512	TCCTCTAAAATTCCTCCAAACCAA	58.040	37.500	0.00	0.00	0.00	3.67
3893	7520	5.592587	TCCTCTAAAATTCCTCCAAACCA	57.407	39.130	0.00	0.00	0.00	3.67
3894	7521	6.773200	CCTATCCTCTAAAATTCCTCCAAACC	59.227	42.308	0.00	0.00	0.00	3.27
3895	7522	7.574607	TCCTATCCTCTAAAATTCCTCCAAAC	58.425	38.462	0.00	0.00	0.00	2.93
3896	7523	7.765149	TCCTATCCTCTAAAATTCCTCCAAA	57.235	36.000	0.00	0.00	0.00	3.28
3897	7524	7.954539	ATCCTATCCTCTAAAATTCCTCCAA	57.045	36.000	0.00	0.00	0.00	3.53
3898	7525	7.796637	AGAATCCTATCCTCTAAAATTCCTCCA	59.203	37.037	0.00	0.00	0.00	3.86
3899	7526	8.213489	AGAATCCTATCCTCTAAAATTCCTCC	57.787	38.462	0.00	0.00	0.00	4.30
3934	7561	6.155393	TGAAACAAAGGGCTCTAAAGGAAAAA	59.845	34.615	0.00	0.00	0.00	1.94
3935	7562	5.659079	TGAAACAAAGGGCTCTAAAGGAAAA	59.341	36.000	0.00	0.00	0.00	2.29
3936	7563	5.205056	TGAAACAAAGGGCTCTAAAGGAAA	58.795	37.500	0.00	0.00	0.00	3.13
3937	7564	4.798882	TGAAACAAAGGGCTCTAAAGGAA	58.201	39.130	0.00	0.00	0.00	3.36
3938	7565	4.447138	TGAAACAAAGGGCTCTAAAGGA	57.553	40.909	0.00	0.00	0.00	3.36
3939	7566	5.358160	CCTATGAAACAAAGGGCTCTAAAGG	59.642	44.000	0.00	0.00	0.00	3.11
3940	7567	6.180472	TCCTATGAAACAAAGGGCTCTAAAG	58.820	40.000	0.00	0.00	0.00	1.85
3941	7568	6.134535	TCCTATGAAACAAAGGGCTCTAAA	57.865	37.500	0.00	0.00	0.00	1.85
3942	7569	5.772393	TCCTATGAAACAAAGGGCTCTAA	57.228	39.130	0.00	0.00	0.00	2.10
3943	7570	5.772393	TTCCTATGAAACAAAGGGCTCTA	57.228	39.130	0.00	0.00	0.00	2.43
3944	7571	4.657814	TTCCTATGAAACAAAGGGCTCT	57.342	40.909	0.00	0.00	0.00	4.09
3945	7572	4.098501	CCATTCCTATGAAACAAAGGGCTC	59.901	45.833	0.00	0.00	33.32	4.70
3946	7573	4.026052	CCATTCCTATGAAACAAAGGGCT	58.974	43.478	0.00	0.00	33.32	5.19
3947	7574	4.023291	TCCATTCCTATGAAACAAAGGGC	58.977	43.478	0.00	0.00	33.32	5.19
3948	7575	6.796785	AATCCATTCCTATGAAACAAAGGG	57.203	37.500	0.00	0.00	33.32	3.95
3987	7614	4.713792	ATGTGGAGGATAGGAACCAATC	57.286	45.455	0.00	0.00	34.11	2.67
3988	7615	5.044179	TGAAATGTGGAGGATAGGAACCAAT	60.044	40.000	0.00	0.00	34.11	3.16
3989	7616	4.290985	TGAAATGTGGAGGATAGGAACCAA	59.709	41.667	0.00	0.00	34.11	3.67
3990	7617	3.849574	TGAAATGTGGAGGATAGGAACCA	59.150	43.478	0.00	0.00	0.00	3.67
3991	7618	4.503714	TGAAATGTGGAGGATAGGAACC	57.496	45.455	0.00	0.00	0.00	3.62
3992	7619	6.043243	TCCTATGAAATGTGGAGGATAGGAAC	59.957	42.308	0.00	0.00	38.86	3.62
3993	7620	6.150332	TCCTATGAAATGTGGAGGATAGGAA	58.850	40.000	0.00	0.00	38.86	3.36
3994	7621	5.726560	TCCTATGAAATGTGGAGGATAGGA	58.273	41.667	0.00	0.00	39.29	2.94
3995	7622	6.439636	TTCCTATGAAATGTGGAGGATAGG	57.560	41.667	0.00	0.00	36.22	2.57
3996	7623	8.930846	ATTTTCCTATGAAATGTGGAGGATAG	57.069	34.615	0.00	0.00	40.08	2.08
3998	7625	9.713684	TTTATTTTCCTATGAAATGTGGAGGAT	57.286	29.630	0.00	0.00	40.08	3.24
3999	7626	9.540538	TTTTATTTTCCTATGAAATGTGGAGGA	57.459	29.630	0.00	0.00	40.08	3.71
4013	7640	9.614792	GAGTCTAGGCTCATTTTTATTTTCCTA	57.385	33.333	19.57	0.00	35.67	2.94
4014	7641	8.109634	TGAGTCTAGGCTCATTTTTATTTTCCT	58.890	33.333	23.07	0.00	40.23	3.36
4015	7642	8.281212	TGAGTCTAGGCTCATTTTTATTTTCC	57.719	34.615	23.07	0.00	40.23	3.13
4028	7655	6.370433	GAATTTTTCCATGAGTCTAGGCTC	57.630	41.667	17.74	17.74	36.12	4.70
4039	7666	8.854031	GGTTGACACCAAAGGAATTTTTCCATG	61.854	40.741	8.87	6.99	46.88	3.66
4040	7667	6.911529	GGTTGACACCAAAGGAATTTTTCCAT	60.912	38.462	8.87	0.00	46.88	3.41
4041	7668	5.627968	GGTTGACACCAAAGGAATTTTTCCA	60.628	40.000	8.87	0.00	46.88	3.53
4042	7669	4.814234	GGTTGACACCAAAGGAATTTTTCC	59.186	41.667	0.00	0.00	45.80	3.13
4043	7670	5.984233	GGTTGACACCAAAGGAATTTTTC	57.016	39.130	0.00	0.00	43.61	2.29
4059	7686	4.749245	AACGAGATGTCATTTGGTTGAC	57.251	40.909	3.39	0.00	45.05	3.18
4060	7687	4.215399	GGAAACGAGATGTCATTTGGTTGA	59.785	41.667	4.80	0.00	0.00	3.18
4061	7688	4.216257	AGGAAACGAGATGTCATTTGGTTG	59.784	41.667	4.80	0.00	0.00	3.77
4062	7689	4.398319	AGGAAACGAGATGTCATTTGGTT	58.602	39.130	0.00	0.00	0.00	3.67
4063	7690	4.021102	AGGAAACGAGATGTCATTTGGT	57.979	40.909	0.00	0.00	0.00	3.67
4064	7691	6.238484	GGAATAGGAAACGAGATGTCATTTGG	60.238	42.308	0.00	0.00	0.00	3.28
4065	7692	6.540189	AGGAATAGGAAACGAGATGTCATTTG	59.460	38.462	0.00	0.00	0.00	2.32
4066	7693	6.653989	AGGAATAGGAAACGAGATGTCATTT	58.346	36.000	0.00	0.00	0.00	2.32
4067	7694	6.240549	AGGAATAGGAAACGAGATGTCATT	57.759	37.500	0.00	0.00	0.00	2.57
4068	7695	5.878406	AGGAATAGGAAACGAGATGTCAT	57.122	39.130	0.00	0.00	0.00	3.06
4069	7696	5.892119	AGTAGGAATAGGAAACGAGATGTCA	59.108	40.000	0.00	0.00	0.00	3.58
4070	7697	6.039493	TGAGTAGGAATAGGAAACGAGATGTC	59.961	42.308	0.00	0.00	0.00	3.06
4071	7698	5.892119	TGAGTAGGAATAGGAAACGAGATGT	59.108	40.000	0.00	0.00	0.00	3.06
4072	7699	6.392625	TGAGTAGGAATAGGAAACGAGATG	57.607	41.667	0.00	0.00	0.00	2.90
4073	7700	8.343168	CTATGAGTAGGAATAGGAAACGAGAT	57.657	38.462	0.00	0.00	0.00	2.75
4074	7701	7.747155	CTATGAGTAGGAATAGGAAACGAGA	57.253	40.000	0.00	0.00	0.00	4.04
4089	7716	9.853555	GACATGTATCTCAAATCCTATGAGTAG	57.146	37.037	0.00	0.00	43.77	2.57
4090	7717	9.367160	TGACATGTATCTCAAATCCTATGAGTA	57.633	33.333	0.00	0.00	43.77	2.59
4091	7718	8.255111	TGACATGTATCTCAAATCCTATGAGT	57.745	34.615	0.00	0.00	43.77	3.41
4092	7719	9.368674	GATGACATGTATCTCAAATCCTATGAG	57.631	37.037	0.00	0.00	44.53	2.90
4093	7720	9.097946	AGATGACATGTATCTCAAATCCTATGA	57.902	33.333	0.00	0.00	29.05	2.15
4094	7721	9.368674	GAGATGACATGTATCTCAAATCCTATG	57.631	37.037	24.95	0.00	46.22	2.23
4104	7731	8.363390	TGTAGGAAATGAGATGACATGTATCTC	58.637	37.037	24.04	24.04	46.82	2.75
4105	7732	8.255111	TGTAGGAAATGAGATGACATGTATCT	57.745	34.615	14.05	14.05	37.59	1.98
4106	7733	8.893219	TTGTAGGAAATGAGATGACATGTATC	57.107	34.615	0.00	2.87	0.00	2.24
4107	7734	9.685276	TTTTGTAGGAAATGAGATGACATGTAT	57.315	29.630	0.00	0.00	0.00	2.29
4108	7735	9.685276	ATTTTGTAGGAAATGAGATGACATGTA	57.315	29.630	0.00	0.00	0.00	2.29
4109	7736	8.585471	ATTTTGTAGGAAATGAGATGACATGT	57.415	30.769	0.00	0.00	0.00	3.21
4110	7737	9.512435	GAATTTTGTAGGAAATGAGATGACATG	57.488	33.333	0.00	0.00	30.06	3.21
4111	7738	8.689972	GGAATTTTGTAGGAAATGAGATGACAT	58.310	33.333	0.00	0.00	30.06	3.06
4112	7739	7.890127	AGGAATTTTGTAGGAAATGAGATGACA	59.110	33.333	0.00	0.00	30.06	3.58
4113	7740	8.286191	AGGAATTTTGTAGGAAATGAGATGAC	57.714	34.615	0.00	0.00	30.06	3.06
4117	7744	9.408648	GGAATAGGAATTTTGTAGGAAATGAGA	57.591	33.333	0.00	0.00	30.06	3.27
4118	7745	9.413734	AGGAATAGGAATTTTGTAGGAAATGAG	57.586	33.333	0.00	0.00	30.06	2.90
4121	7748	9.338622	CGTAGGAATAGGAATTTTGTAGGAAAT	57.661	33.333	0.00	0.00	0.00	2.17
4122	7749	8.542080	TCGTAGGAATAGGAATTTTGTAGGAAA	58.458	33.333	0.00	0.00	0.00	3.13
4123	7750	8.081517	TCGTAGGAATAGGAATTTTGTAGGAA	57.918	34.615	0.00	0.00	0.00	3.36
4124	7751	7.664552	TCGTAGGAATAGGAATTTTGTAGGA	57.335	36.000	0.00	0.00	0.00	2.94
4125	7752	9.991906	TTATCGTAGGAATAGGAATTTTGTAGG	57.008	33.333	0.00	0.00	0.00	3.18
4128	7755	9.503399	GGATTATCGTAGGAATAGGAATTTTGT	57.497	33.333	0.00	0.00	0.00	2.83
4129	7756	9.726438	AGGATTATCGTAGGAATAGGAATTTTG	57.274	33.333	0.00	0.00	0.00	2.44
4133	7760	9.369672	GGATAGGATTATCGTAGGAATAGGAAT	57.630	37.037	1.23	0.00	37.20	3.01
4134	7761	8.566979	AGGATAGGATTATCGTAGGAATAGGAA	58.433	37.037	1.23	0.00	37.20	3.36
4135	7762	8.115490	AGGATAGGATTATCGTAGGAATAGGA	57.885	38.462	1.23	0.00	37.20	2.94
4139	7766	9.937876	TTCATAGGATAGGATTATCGTAGGAAT	57.062	33.333	14.87	0.00	44.20	3.01
4140	7767	9.186837	GTTCATAGGATAGGATTATCGTAGGAA	57.813	37.037	14.87	14.87	45.40	3.36
4141	7768	7.778853	GGTTCATAGGATAGGATTATCGTAGGA	59.221	40.741	7.24	7.24	41.67	2.94
4142	7769	7.560262	TGGTTCATAGGATAGGATTATCGTAGG	59.440	40.741	1.23	3.78	39.00	3.18
4143	7770	8.521170	TGGTTCATAGGATAGGATTATCGTAG	57.479	38.462	1.23	0.00	39.00	3.51
4144	7771	8.888836	TTGGTTCATAGGATAGGATTATCGTA	57.111	34.615	0.00	0.00	39.58	3.43
4145	7772	7.792364	TTGGTTCATAGGATAGGATTATCGT	57.208	36.000	0.00	0.00	37.20	3.73
4146	7773	9.155975	CTTTTGGTTCATAGGATAGGATTATCG	57.844	37.037	0.00	0.00	37.20	2.92
4149	7776	8.660435	CCTCTTTTGGTTCATAGGATAGGATTA	58.340	37.037	0.00	0.00	28.27	1.75
4150	7777	7.521669	CCTCTTTTGGTTCATAGGATAGGATT	58.478	38.462	0.00	0.00	28.27	3.01
4151	7778	6.466470	GCCTCTTTTGGTTCATAGGATAGGAT	60.466	42.308	0.00	0.00	28.27	3.24
4152	7779	5.163195	GCCTCTTTTGGTTCATAGGATAGGA	60.163	44.000	0.00	0.00	0.00	2.94
4153	7780	5.066593	GCCTCTTTTGGTTCATAGGATAGG	58.933	45.833	0.00	0.00	0.00	2.57
4154	7781	5.066593	GGCCTCTTTTGGTTCATAGGATAG	58.933	45.833	0.00	0.00	0.00	2.08
4155	7782	4.726825	AGGCCTCTTTTGGTTCATAGGATA	59.273	41.667	0.00	0.00	0.00	2.59
4156	7783	3.529319	AGGCCTCTTTTGGTTCATAGGAT	59.471	43.478	0.00	0.00	0.00	3.24
4157	7784	2.919602	AGGCCTCTTTTGGTTCATAGGA	59.080	45.455	0.00	0.00	0.00	2.94
4158	7785	3.372440	AGGCCTCTTTTGGTTCATAGG	57.628	47.619	0.00	0.00	0.00	2.57
4159	7786	6.183360	CCATTAAGGCCTCTTTTGGTTCATAG	60.183	42.308	5.23	0.00	33.73	2.23
4160	7787	5.656416	CCATTAAGGCCTCTTTTGGTTCATA	59.344	40.000	5.23	0.00	33.73	2.15
4161	7788	4.467438	CCATTAAGGCCTCTTTTGGTTCAT	59.533	41.667	5.23	0.00	33.73	2.57
4162	7789	3.831911	CCATTAAGGCCTCTTTTGGTTCA	59.168	43.478	5.23	0.00	33.73	3.18
4163	7790	3.195610	CCCATTAAGGCCTCTTTTGGTTC	59.804	47.826	5.23	0.00	35.23	3.62
4164	7791	3.173151	CCCATTAAGGCCTCTTTTGGTT	58.827	45.455	5.23	0.00	35.23	3.67
4165	7792	2.111792	ACCCATTAAGGCCTCTTTTGGT	59.888	45.455	5.23	8.17	35.23	3.67
4166	7793	2.760650	GACCCATTAAGGCCTCTTTTGG	59.239	50.000	5.23	11.32	36.04	3.28
4167	7794	3.445096	CAGACCCATTAAGGCCTCTTTTG	59.555	47.826	5.23	1.43	34.59	2.44
4168	7795	3.564352	CCAGACCCATTAAGGCCTCTTTT	60.564	47.826	5.23	0.00	34.59	2.27
4169	7796	2.024941	CCAGACCCATTAAGGCCTCTTT	60.025	50.000	5.23	0.00	34.59	2.52
4170	7797	1.566231	CCAGACCCATTAAGGCCTCTT	59.434	52.381	5.23	0.00	37.03	2.85
4171	7798	1.216990	CCAGACCCATTAAGGCCTCT	58.783	55.000	5.23	0.00	35.39	3.69
4172	7799	0.919710	ACCAGACCCATTAAGGCCTC	59.080	55.000	5.23	0.00	35.39	4.70
4173	7800	1.382914	AACCAGACCCATTAAGGCCT	58.617	50.000	0.00	0.00	35.39	5.19
4174	7801	2.231716	AAACCAGACCCATTAAGGCC	57.768	50.000	0.00	0.00	35.39	5.19
4175	7802	3.021695	GGTAAACCAGACCCATTAAGGC	58.978	50.000	0.00	0.00	33.78	4.35
4176	7803	4.310022	TGGTAAACCAGACCCATTAAGG	57.690	45.455	0.00	0.00	42.01	2.69
4202	7829	4.325028	TCAAAGAAACGTGCTAGTGGTA	57.675	40.909	0.00	0.00	0.00	3.25
4203	7830	3.188159	TCAAAGAAACGTGCTAGTGGT	57.812	42.857	0.00	0.00	0.00	4.16
4204	7831	4.545823	TTTCAAAGAAACGTGCTAGTGG	57.454	40.909	0.00	0.00	0.00	4.00
4207	7834	5.625311	GGAACATTTCAAAGAAACGTGCTAG	59.375	40.000	0.00	0.00	0.00	3.42
4222	8137	6.613755	TTTAATAGCTAGCGGGAACATTTC	57.386	37.500	9.55	0.00	0.00	2.17
4231	9495	7.849804	ATGGTATCAATTTAATAGCTAGCGG	57.150	36.000	9.55	0.00	0.00	5.52
4307	9575	9.594478	CCTTCCAACAAAATTAAAAGTACACTT	57.406	29.630	0.00	0.00	37.91	3.16
4308	9576	8.755028	ACCTTCCAACAAAATTAAAAGTACACT	58.245	29.630	0.00	0.00	0.00	3.55
4309	9577	8.936070	ACCTTCCAACAAAATTAAAAGTACAC	57.064	30.769	0.00	0.00	0.00	2.90
4310	9578	8.750298	TGACCTTCCAACAAAATTAAAAGTACA	58.250	29.630	0.00	0.00	0.00	2.90
4311	9579	9.589111	TTGACCTTCCAACAAAATTAAAAGTAC	57.411	29.630	0.00	0.00	0.00	2.73
4313	9581	8.941977	GTTTGACCTTCCAACAAAATTAAAAGT	58.058	29.630	0.00	0.00	35.74	2.66
4314	9582	9.161629	AGTTTGACCTTCCAACAAAATTAAAAG	57.838	29.630	0.00	0.00	35.74	2.27
4317	9585	9.974980	GATAGTTTGACCTTCCAACAAAATTAA	57.025	29.630	0.00	0.00	35.74	1.40
4318	9586	9.362151	AGATAGTTTGACCTTCCAACAAAATTA	57.638	29.630	0.00	0.00	35.74	1.40
4319	9587	8.250143	AGATAGTTTGACCTTCCAACAAAATT	57.750	30.769	0.00	0.00	35.74	1.82
4320	9588	7.505585	TGAGATAGTTTGACCTTCCAACAAAAT	59.494	33.333	0.00	0.00	35.74	1.82
4321	9589	6.831353	TGAGATAGTTTGACCTTCCAACAAAA	59.169	34.615	0.00	0.00	35.74	2.44
4322	9590	6.361433	TGAGATAGTTTGACCTTCCAACAAA	58.639	36.000	0.00	0.00	0.00	2.83
4323	9591	5.935945	TGAGATAGTTTGACCTTCCAACAA	58.064	37.500	0.00	0.00	0.00	2.83
4324	9592	5.560722	TGAGATAGTTTGACCTTCCAACA	57.439	39.130	0.00	0.00	0.00	3.33
4325	9593	6.877611	TTTGAGATAGTTTGACCTTCCAAC	57.122	37.500	0.00	0.00	0.00	3.77
4326	9594	8.477419	AATTTTGAGATAGTTTGACCTTCCAA	57.523	30.769	0.00	0.00	0.00	3.53
4327	9595	8.359642	CAAATTTTGAGATAGTTTGACCTTCCA	58.640	33.333	2.88	0.00	32.93	3.53
4328	9596	8.576442	TCAAATTTTGAGATAGTTTGACCTTCC	58.424	33.333	7.74	0.00	34.82	3.46
4329	9597	9.399403	GTCAAATTTTGAGATAGTTTGACCTTC	57.601	33.333	12.02	0.00	46.32	3.46
4334	9602	8.912988	ACTTGGTCAAATTTTGAGATAGTTTGA	58.087	29.630	12.02	0.00	41.01	2.69
4335	9603	9.533253	AACTTGGTCAAATTTTGAGATAGTTTG	57.467	29.630	12.02	0.00	41.01	2.93
4337	9605	9.533253	CAAACTTGGTCAAATTTTGAGATAGTT	57.467	29.630	12.02	15.82	41.01	2.24
4338	9606	8.695456	ACAAACTTGGTCAAATTTTGAGATAGT	58.305	29.630	12.02	11.61	41.01	2.12
4339	9607	8.971321	CACAAACTTGGTCAAATTTTGAGATAG	58.029	33.333	12.02	11.07	41.01	2.08
4340	9608	7.437862	GCACAAACTTGGTCAAATTTTGAGATA	59.562	33.333	12.02	0.00	41.01	1.98
4341	9609	6.258507	GCACAAACTTGGTCAAATTTTGAGAT	59.741	34.615	12.02	0.00	41.01	2.75
4342	9610	5.580297	GCACAAACTTGGTCAAATTTTGAGA	59.420	36.000	12.02	0.00	41.01	3.27
4343	9611	5.350914	TGCACAAACTTGGTCAAATTTTGAG	59.649	36.000	12.02	13.00	41.01	3.02
4344	9612	5.121454	GTGCACAAACTTGGTCAAATTTTGA	59.879	36.000	13.17	7.74	37.33	2.69
4345	9613	5.106791	TGTGCACAAACTTGGTCAAATTTTG	60.107	36.000	19.28	2.59	33.20	2.44
4346	9614	4.999950	TGTGCACAAACTTGGTCAAATTTT	59.000	33.333	19.28	0.00	0.00	1.82
4347	9615	4.573900	TGTGCACAAACTTGGTCAAATTT	58.426	34.783	19.28	0.00	0.00	1.82
4348	9616	4.199432	TGTGCACAAACTTGGTCAAATT	57.801	36.364	19.28	0.00	0.00	1.82
4349	9617	3.883830	TGTGCACAAACTTGGTCAAAT	57.116	38.095	19.28	0.00	0.00	2.32
4350	9618	3.667497	TTGTGCACAAACTTGGTCAAA	57.333	38.095	29.36	2.24	32.11	2.69
4351	9619	3.667497	TTTGTGCACAAACTTGGTCAA	57.333	38.095	35.10	14.92	40.55	3.18
4380	9648	9.625747	TCATATATCTATTTGGTTTCACAAGCA	57.374	29.630	0.00	0.00	38.66	3.91
4381	9649	9.884465	GTCATATATCTATTTGGTTTCACAAGC	57.116	33.333	0.00	0.00	0.00	4.01
4496	9764	8.073467	TCCAACTTTATTGGAAAGTCAAACTT	57.927	30.769	5.91	0.00	44.90	2.66
4497	9765	7.654022	TCCAACTTTATTGGAAAGTCAAACT	57.346	32.000	5.91	0.00	44.90	2.66
4507	9775	7.074653	AGAGTGTACTTCCAACTTTATTGGA	57.925	36.000	4.24	4.24	46.08	3.53
4508	9776	7.745620	AAGAGTGTACTTCCAACTTTATTGG	57.254	36.000	0.00	0.00	40.87	3.16
4509	9777	8.836413	TGAAAGAGTGTACTTCCAACTTTATTG	58.164	33.333	0.00	0.00	0.00	1.90
4510	9778	8.974060	TGAAAGAGTGTACTTCCAACTTTATT	57.026	30.769	0.00	0.00	0.00	1.40
4511	9779	8.974060	TTGAAAGAGTGTACTTCCAACTTTAT	57.026	30.769	0.00	0.00	0.00	1.40
4512	9780	7.497909	CCTTGAAAGAGTGTACTTCCAACTTTA	59.502	37.037	0.00	0.00	0.00	1.85
4513	9781	6.318900	CCTTGAAAGAGTGTACTTCCAACTTT	59.681	38.462	0.00	0.00	0.00	2.66
4514	9782	5.823045	CCTTGAAAGAGTGTACTTCCAACTT	59.177	40.000	0.00	0.00	0.00	2.66
4515	9783	5.130477	TCCTTGAAAGAGTGTACTTCCAACT	59.870	40.000	0.00	0.00	0.00	3.16
4516	9784	5.236695	GTCCTTGAAAGAGTGTACTTCCAAC	59.763	44.000	0.00	0.00	0.00	3.77
4517	9785	5.365619	GTCCTTGAAAGAGTGTACTTCCAA	58.634	41.667	0.00	0.00	0.00	3.53
4518	9786	4.500887	CGTCCTTGAAAGAGTGTACTTCCA	60.501	45.833	0.00	0.00	0.00	3.53
4519	9787	3.988517	CGTCCTTGAAAGAGTGTACTTCC	59.011	47.826	0.00	0.00	0.00	3.46
4520	9788	3.988517	CCGTCCTTGAAAGAGTGTACTTC	59.011	47.826	0.00	0.00	0.00	3.01
4521	9789	3.640029	TCCGTCCTTGAAAGAGTGTACTT	59.360	43.478	0.00	0.00	0.00	2.24
4522	9790	3.228453	TCCGTCCTTGAAAGAGTGTACT	58.772	45.455	0.00	0.00	0.00	2.73
4523	9791	3.576648	CTCCGTCCTTGAAAGAGTGTAC	58.423	50.000	0.00	0.00	0.00	2.90
4524	9792	2.561419	CCTCCGTCCTTGAAAGAGTGTA	59.439	50.000	0.00	0.00	0.00	2.90
4525	9793	1.344763	CCTCCGTCCTTGAAAGAGTGT	59.655	52.381	0.00	0.00	0.00	3.55
4526	9794	1.338200	CCCTCCGTCCTTGAAAGAGTG	60.338	57.143	0.00	0.00	0.00	3.51
4527	9795	0.977395	CCCTCCGTCCTTGAAAGAGT	59.023	55.000	0.00	0.00	0.00	3.24
4528	9796	1.205893	CTCCCTCCGTCCTTGAAAGAG	59.794	57.143	0.00	0.00	0.00	2.85
4529	9797	1.267121	CTCCCTCCGTCCTTGAAAGA	58.733	55.000	0.00	0.00	0.00	2.52
4530	9798	0.977395	ACTCCCTCCGTCCTTGAAAG	59.023	55.000	0.00	0.00	0.00	2.62
4531	9799	1.897802	GTACTCCCTCCGTCCTTGAAA	59.102	52.381	0.00	0.00	0.00	2.69
4532	9800	1.203087	TGTACTCCCTCCGTCCTTGAA	60.203	52.381	0.00	0.00	0.00	2.69
4533	9801	0.406750	TGTACTCCCTCCGTCCTTGA	59.593	55.000	0.00	0.00	0.00	3.02
4534	9802	1.486211	ATGTACTCCCTCCGTCCTTG	58.514	55.000	0.00	0.00	0.00	3.61
4535	9803	2.424523	CCTATGTACTCCCTCCGTCCTT	60.425	54.545	0.00	0.00	0.00	3.36
4536	9804	1.145325	CCTATGTACTCCCTCCGTCCT	59.855	57.143	0.00	0.00	0.00	3.85
4537	9805	1.144503	TCCTATGTACTCCCTCCGTCC	59.855	57.143	0.00	0.00	0.00	4.79
4538	9806	2.653234	TCCTATGTACTCCCTCCGTC	57.347	55.000	0.00	0.00	0.00	4.79
4539	9807	2.491086	CCATCCTATGTACTCCCTCCGT	60.491	54.545	0.00	0.00	0.00	4.69
4540	9808	2.171840	CCATCCTATGTACTCCCTCCG	58.828	57.143	0.00	0.00	0.00	4.63
4541	9809	1.903183	GCCATCCTATGTACTCCCTCC	59.097	57.143	0.00	0.00	0.00	4.30
4542	9810	1.903183	GGCCATCCTATGTACTCCCTC	59.097	57.143	0.00	0.00	0.00	4.30
4543	9811	1.223077	TGGCCATCCTATGTACTCCCT	59.777	52.381	0.00	0.00	0.00	4.20
4544	9812	1.729586	TGGCCATCCTATGTACTCCC	58.270	55.000	0.00	0.00	0.00	4.30
4545	9813	5.499004	TTAATGGCCATCCTATGTACTCC	57.501	43.478	21.08	0.00	0.00	3.85
4546	9814	6.599638	GGAATTAATGGCCATCCTATGTACTC	59.400	42.308	21.08	7.04	0.00	2.59
4547	9815	6.485171	GGAATTAATGGCCATCCTATGTACT	58.515	40.000	21.08	1.83	0.00	2.73
4548	9816	5.652452	GGGAATTAATGGCCATCCTATGTAC	59.348	44.000	21.08	5.74	0.00	2.90
4549	9817	5.314573	TGGGAATTAATGGCCATCCTATGTA	59.685	40.000	21.08	3.21	0.00	2.29
4550	9818	4.107798	TGGGAATTAATGGCCATCCTATGT	59.892	41.667	21.08	4.38	0.00	2.29
4551	9819	4.676109	TGGGAATTAATGGCCATCCTATG	58.324	43.478	21.08	0.00	0.00	2.23
4596	9864	2.758979	AGTTACACTGGGATACTGACCG	59.241	50.000	0.00	0.00	0.00	4.79
4650	9921	2.608623	CAACCTTCTTTGGGATTGGGT	58.391	47.619	0.00	0.00	0.00	4.51
4907	10199	0.623723	TTCTAGTTCCATGCCCCCAC	59.376	55.000	0.00	0.00	0.00	4.61
5100	10399	3.758088	ATAGCCGAGCTGCGTCGTG	62.758	63.158	16.25	10.83	40.10	4.35
5196	10497	4.953579	ACGGTTGGATGGCAATAAGTAATT	59.046	37.500	0.00	0.00	0.00	1.40
5202	10503	2.621055	GCATACGGTTGGATGGCAATAA	59.379	45.455	0.00	0.00	0.00	1.40
5203	10504	2.226330	GCATACGGTTGGATGGCAATA	58.774	47.619	0.00	0.00	0.00	1.90
5396	10710	4.637977	TGATGCACACAACTAAACTGAACA	59.362	37.500	0.00	0.00	0.00	3.18
5487	12273	1.518133	CTCTAGCTCTGGTGCGTGC	60.518	63.158	0.00	0.00	38.13	5.34
5490	12276	1.337260	ACAAACTCTAGCTCTGGTGCG	60.337	52.381	0.00	0.00	38.13	5.34
5510	12302	9.820725	CCTATTTTGGCATTTTCATGAATTAGA	57.179	29.630	9.40	0.00	31.07	2.10
5641	12462	3.878778	AGCTTCGGAAGTTTATCAGCAT	58.121	40.909	18.32	0.00	0.00	3.79
5645	12466	5.642063	CCACTAAAGCTTCGGAAGTTTATCA	59.358	40.000	18.26	7.78	31.33	2.15
5648	12470	3.749609	GCCACTAAAGCTTCGGAAGTTTA	59.250	43.478	18.26	17.47	31.33	2.01
5660	12482	2.426738	TGTATGCCATTGCCACTAAAGC	59.573	45.455	0.00	0.00	36.33	3.51
5868	12705	1.308998	GGCCTACCATTCATCCAACG	58.691	55.000	0.00	0.00	35.26	4.10
5912	12781	6.714810	TGAAACGGAGGTAGTAGTAGTAAACA	59.285	38.462	0.00	0.00	0.00	2.83
5913	12782	7.094592	ACTGAAACGGAGGTAGTAGTAGTAAAC	60.095	40.741	0.00	0.00	0.00	2.01
5919	12788	6.714810	TGTAAACTGAAACGGAGGTAGTAGTA	59.285	38.462	0.00	0.00	0.00	1.82
5920	12789	5.536161	TGTAAACTGAAACGGAGGTAGTAGT	59.464	40.000	0.00	0.00	0.00	2.73
5921	12790	6.017400	TGTAAACTGAAACGGAGGTAGTAG	57.983	41.667	0.00	0.00	0.00	2.57
5922	12791	6.040842	ACTTGTAAACTGAAACGGAGGTAGTA	59.959	38.462	0.00	0.00	0.00	1.82
5923	12792	4.942761	TGTAAACTGAAACGGAGGTAGT	57.057	40.909	0.00	0.00	0.00	2.73
5924	12793	5.295152	ACTTGTAAACTGAAACGGAGGTAG	58.705	41.667	0.00	0.00	0.00	3.18
5925	12794	5.280654	ACTTGTAAACTGAAACGGAGGTA	57.719	39.130	0.00	0.00	0.00	3.08
5926	12795	4.124970	GACTTGTAAACTGAAACGGAGGT	58.875	43.478	0.00	0.00	0.00	3.85
5927	12796	3.497262	GGACTTGTAAACTGAAACGGAGG	59.503	47.826	0.00	0.00	0.00	4.30
5928	12797	4.211374	CAGGACTTGTAAACTGAAACGGAG	59.789	45.833	0.00	0.00	32.86	4.63
5929	12798	4.124238	CAGGACTTGTAAACTGAAACGGA	58.876	43.478	0.00	0.00	32.86	4.69
5930	12799	3.303791	GCAGGACTTGTAAACTGAAACGG	60.304	47.826	0.00	0.00	32.86	4.44
5931	12800	3.311322	TGCAGGACTTGTAAACTGAAACG	59.689	43.478	0.00	0.00	32.86	3.60
5932	12801	4.598062	GTGCAGGACTTGTAAACTGAAAC	58.402	43.478	0.00	0.00	32.86	2.78
5933	12802	3.311322	CGTGCAGGACTTGTAAACTGAAA	59.689	43.478	0.00	0.00	32.86	2.69
5934	12803	2.869801	CGTGCAGGACTTGTAAACTGAA	59.130	45.455	0.00	0.00	32.86	3.02
5935	12804	2.159014	ACGTGCAGGACTTGTAAACTGA	60.159	45.455	14.38	0.00	32.86	3.41
5936	12805	2.210116	ACGTGCAGGACTTGTAAACTG	58.790	47.619	14.38	0.00	0.00	3.16
5937	12806	2.614829	ACGTGCAGGACTTGTAAACT	57.385	45.000	14.38	0.00	0.00	2.66
5938	12807	4.328169	GGTATACGTGCAGGACTTGTAAAC	59.672	45.833	14.38	0.06	0.00	2.01
5939	12808	4.221262	AGGTATACGTGCAGGACTTGTAAA	59.779	41.667	14.38	0.00	0.00	2.01
5940	12809	3.765511	AGGTATACGTGCAGGACTTGTAA	59.234	43.478	14.38	0.00	0.00	2.41
5941	12810	3.359033	AGGTATACGTGCAGGACTTGTA	58.641	45.455	14.38	0.00	0.00	2.41
5942	12811	2.176889	AGGTATACGTGCAGGACTTGT	58.823	47.619	14.38	0.00	0.00	3.16
5943	12812	2.961526	AGGTATACGTGCAGGACTTG	57.038	50.000	14.38	0.00	0.00	3.16
5944	12813	3.894759	TCTAGGTATACGTGCAGGACTT	58.105	45.455	14.38	0.00	0.00	3.01
5945	12814	3.572632	TCTAGGTATACGTGCAGGACT	57.427	47.619	14.38	5.63	0.00	3.85
5946	12815	4.037684	ACAATCTAGGTATACGTGCAGGAC	59.962	45.833	14.38	0.46	0.00	3.85
5947	12816	4.212716	ACAATCTAGGTATACGTGCAGGA	58.787	43.478	14.38	0.00	0.00	3.86
5948	12817	4.037565	TGACAATCTAGGTATACGTGCAGG	59.962	45.833	8.32	4.53	0.00	4.85
5949	12818	5.183014	TGACAATCTAGGTATACGTGCAG	57.817	43.478	8.32	0.00	0.00	4.41
5950	12819	5.585820	TTGACAATCTAGGTATACGTGCA	57.414	39.130	8.32	0.00	0.00	4.57
5951	12820	7.478520	AAATTGACAATCTAGGTATACGTGC	57.521	36.000	8.32	0.00	0.00	5.34
5953	12822	9.538508	GGTAAAATTGACAATCTAGGTATACGT	57.461	33.333	0.05	3.23	0.00	3.57
5954	12823	9.537192	TGGTAAAATTGACAATCTAGGTATACG	57.463	33.333	0.05	0.00	0.00	3.06
5957	12826	9.574516	GGATGGTAAAATTGACAATCTAGGTAT	57.425	33.333	0.05	0.00	29.35	2.73
5958	12827	8.778059	AGGATGGTAAAATTGACAATCTAGGTA	58.222	33.333	0.05	0.00	29.35	3.08
5959	12828	7.643123	AGGATGGTAAAATTGACAATCTAGGT	58.357	34.615	0.05	0.00	29.35	3.08
5960	12829	9.627123	TTAGGATGGTAAAATTGACAATCTAGG	57.373	33.333	0.05	0.00	29.35	3.02
6011	12880	9.783081	TTCGGAGTTTCTACTTTTAAAAGGTAT	57.217	29.630	27.23	12.51	40.31	2.73
6012	12881	9.264719	CTTCGGAGTTTCTACTTTTAAAAGGTA	57.735	33.333	27.23	17.04	40.31	3.08
6013	12882	7.772292	ACTTCGGAGTTTCTACTTTTAAAAGGT	59.228	33.333	27.23	16.86	34.81	3.50
6014	12883	8.151141	ACTTCGGAGTTTCTACTTTTAAAAGG	57.849	34.615	27.23	13.67	34.81	3.11
6030	12899	9.457436	AAAATATACCAACATAAACTTCGGAGT	57.543	29.630	0.00	0.00	37.87	3.85
6070	12939	8.932791	CGTTAATTTGATCAACCTAGTACAAGT	58.067	33.333	7.89	0.00	0.00	3.16
6071	12940	9.146984	TCGTTAATTTGATCAACCTAGTACAAG	57.853	33.333	7.89	0.00	0.00	3.16
6072	12941	8.928733	GTCGTTAATTTGATCAACCTAGTACAA	58.071	33.333	7.89	0.00	0.00	2.41
6073	12942	7.546667	GGTCGTTAATTTGATCAACCTAGTACA	59.453	37.037	7.89	0.00	0.00	2.90
6074	12943	7.763071	AGGTCGTTAATTTGATCAACCTAGTAC	59.237	37.037	7.89	1.91	34.22	2.73
6075	12944	7.844009	AGGTCGTTAATTTGATCAACCTAGTA	58.156	34.615	7.89	0.00	34.22	1.82
6076	12945	6.708285	AGGTCGTTAATTTGATCAACCTAGT	58.292	36.000	7.89	0.00	34.22	2.57
6077	12946	8.354011	CTAGGTCGTTAATTTGATCAACCTAG	57.646	38.462	22.45	22.45	44.99	3.02
6078	12947	7.093201	ACCTAGGTCGTTAATTTGATCAACCTA	60.093	37.037	9.21	12.34	37.15	3.08
6079	12948	6.113411	CCTAGGTCGTTAATTTGATCAACCT	58.887	40.000	7.89	11.84	39.19	3.50
6080	12949	5.878669	ACCTAGGTCGTTAATTTGATCAACC	59.121	40.000	9.21	4.13	0.00	3.77
6081	12950	6.370718	ACACCTAGGTCGTTAATTTGATCAAC	59.629	38.462	12.84	0.00	0.00	3.18
6082	12951	6.469410	ACACCTAGGTCGTTAATTTGATCAA	58.531	36.000	12.84	3.38	0.00	2.57
6083	12952	6.045072	ACACCTAGGTCGTTAATTTGATCA	57.955	37.500	12.84	0.00	0.00	2.92
6084	12953	6.197842	CGTACACCTAGGTCGTTAATTTGATC	59.802	42.308	12.84	0.00	0.00	2.92
6085	12954	6.038356	CGTACACCTAGGTCGTTAATTTGAT	58.962	40.000	12.84	0.00	0.00	2.57
6086	12955	5.401550	CGTACACCTAGGTCGTTAATTTGA	58.598	41.667	12.84	0.00	0.00	2.69
6087	12956	4.032104	GCGTACACCTAGGTCGTTAATTTG	59.968	45.833	12.84	0.00	0.00	2.32
6088	12957	4.176271	GCGTACACCTAGGTCGTTAATTT	58.824	43.478	12.84	0.00	0.00	1.82
6089	12958	3.731867	CGCGTACACCTAGGTCGTTAATT	60.732	47.826	12.84	0.00	0.00	1.40
6090	12959	2.223340	CGCGTACACCTAGGTCGTTAAT	60.223	50.000	12.84	0.00	0.00	1.40
6091	12960	1.130373	CGCGTACACCTAGGTCGTTAA	59.870	52.381	12.84	0.00	0.00	2.01
6092	12961	0.726827	CGCGTACACCTAGGTCGTTA	59.273	55.000	12.84	0.50	0.00	3.18
6093	12962	1.503542	CGCGTACACCTAGGTCGTT	59.496	57.895	12.84	1.58	0.00	3.85
6094	12963	3.044059	GCGCGTACACCTAGGTCGT	62.044	63.158	12.84	15.85	0.00	4.34
6095	12964	2.277756	GCGCGTACACCTAGGTCG	60.278	66.667	12.84	14.34	0.00	4.79
6096	12965	1.515736	GTGCGCGTACACCTAGGTC	60.516	63.158	22.80	0.00	34.35	3.85
6097	12966	2.570181	GTGCGCGTACACCTAGGT	59.430	61.111	22.80	9.21	34.35	3.08
6098	12967	2.578713	CGTGCGCGTACACCTAGG	60.579	66.667	26.55	7.41	37.25	3.02
6099	12968	3.245315	GCGTGCGCGTACACCTAG	61.245	66.667	26.55	11.17	40.81	3.02
6100	12969	4.781959	GGCGTGCGCGTACACCTA	62.782	66.667	24.50	0.00	43.06	3.08
6105	12974	4.781959	TACAGGGCGTGCGCGTAC	62.782	66.667	22.18	17.94	43.06	3.67
6106	12975	3.570621	TTTACAGGGCGTGCGCGTA	62.571	57.895	22.18	0.00	43.06	4.42
6107	12976	4.973055	TTTACAGGGCGTGCGCGT	62.973	61.111	22.18	2.94	43.06	6.01
6108	12977	4.439472	GTTTACAGGGCGTGCGCG	62.439	66.667	16.86	16.86	43.06	6.86
6109	12978	3.047877	AGTTTACAGGGCGTGCGC	61.048	61.111	7.17	8.17	41.06	6.09
6110	12979	1.626654	CTCAGTTTACAGGGCGTGCG	61.627	60.000	7.17	0.00	0.00	5.34
6111	12980	1.912371	GCTCAGTTTACAGGGCGTGC	61.912	60.000	7.17	0.00	0.00	5.34
6112	12981	1.626654	CGCTCAGTTTACAGGGCGTG	61.627	60.000	10.85	5.50	38.20	5.34
6113	12982	1.374252	CGCTCAGTTTACAGGGCGT	60.374	57.895	10.85	0.00	38.20	5.68
6114	12983	1.078759	CTCGCTCAGTTTACAGGGCG	61.079	60.000	12.58	12.58	43.22	6.13
6115	12984	0.246635	TCTCGCTCAGTTTACAGGGC	59.753	55.000	0.00	0.00	0.00	5.19
6116	12985	1.134965	CCTCTCGCTCAGTTTACAGGG	60.135	57.143	0.00	0.00	0.00	4.45
6117	12986	1.546476	ACCTCTCGCTCAGTTTACAGG	59.454	52.381	0.00	0.00	0.00	4.00
6118	12987	3.440872	ACTACCTCTCGCTCAGTTTACAG	59.559	47.826	0.00	0.00	0.00	2.74
6119	12988	3.418995	ACTACCTCTCGCTCAGTTTACA	58.581	45.455	0.00	0.00	0.00	2.41
6120	12989	5.557891	TTACTACCTCTCGCTCAGTTTAC	57.442	43.478	0.00	0.00	0.00	2.01
6121	12990	6.770746	AATTACTACCTCTCGCTCAGTTTA	57.229	37.500	0.00	0.00	0.00	2.01
6122	12991	5.662674	AATTACTACCTCTCGCTCAGTTT	57.337	39.130	0.00	0.00	0.00	2.66
6123	12992	6.963083	ATAATTACTACCTCTCGCTCAGTT	57.037	37.500	0.00	0.00	0.00	3.16
6124	12993	6.963083	AATAATTACTACCTCTCGCTCAGT	57.037	37.500	0.00	0.00	0.00	3.41
6125	12994	7.921214	TGAAAATAATTACTACCTCTCGCTCAG	59.079	37.037	0.00	0.00	0.00	3.35
6126	12995	7.778083	TGAAAATAATTACTACCTCTCGCTCA	58.222	34.615	0.00	0.00	0.00	4.26
6127	12996	7.382759	CCTGAAAATAATTACTACCTCTCGCTC	59.617	40.741	0.00	0.00	0.00	5.03
6128	12997	7.210873	CCTGAAAATAATTACTACCTCTCGCT	58.789	38.462	0.00	0.00	0.00	4.93
6129	12998	6.073711	GCCTGAAAATAATTACTACCTCTCGC	60.074	42.308	0.00	0.00	0.00	5.03
6130	12999	6.984474	TGCCTGAAAATAATTACTACCTCTCG	59.016	38.462	0.00	0.00	0.00	4.04
6131	13000	7.041712	GCTGCCTGAAAATAATTACTACCTCTC	60.042	40.741	0.00	0.00	0.00	3.20
6132	13001	6.768381	GCTGCCTGAAAATAATTACTACCTCT	59.232	38.462	0.00	0.00	0.00	3.69
6133	13002	6.542370	TGCTGCCTGAAAATAATTACTACCTC	59.458	38.462	0.00	0.00	0.00	3.85
6134	13003	6.423182	TGCTGCCTGAAAATAATTACTACCT	58.577	36.000	0.00	0.00	0.00	3.08
6135	13004	6.693315	TGCTGCCTGAAAATAATTACTACC	57.307	37.500	0.00	0.00	0.00	3.18
6136	13005	8.405531	TGATTGCTGCCTGAAAATAATTACTAC	58.594	33.333	0.00	0.00	0.00	2.73
6139	13008	8.545420	CAATGATTGCTGCCTGAAAATAATTAC	58.455	33.333	0.00	0.00	0.00	1.89
6159	13028	1.656652	GTAGGCACGTGAGCAATGAT	58.343	50.000	22.23	0.00	35.83	2.45
6404	13292	9.069082	CCTATACATCTAGTAGCAGTAGTTGTT	57.931	37.037	14.45	8.96	36.22	2.83
6406	13294	8.624367	ACCTATACATCTAGTAGCAGTAGTTG	57.376	38.462	0.00	0.00	35.85	3.16
6410	13298	8.202811	CCGATACCTATACATCTAGTAGCAGTA	58.797	40.741	0.00	0.00	35.85	2.74
6414	13302	8.680039	ATTCCGATACCTATACATCTAGTAGC	57.320	38.462	0.00	0.00	35.85	3.58
6449	13337	1.904287	TTATGGCACCAAGACCACAC	58.096	50.000	0.00	0.00	39.19	3.82
6455	13343	3.897239	CCCAAGTATTATGGCACCAAGA	58.103	45.455	0.00	0.00	36.58	3.02
6475	13363	2.930950	TGAATGCCACAATACCTAGCC	58.069	47.619	0.00	0.00	0.00	3.93
6485	13373	3.008923	TCCACTTACTGATGAATGCCACA	59.991	43.478	0.00	0.00	0.00	4.17
6486	13374	3.609853	TCCACTTACTGATGAATGCCAC	58.390	45.455	0.00	0.00	0.00	5.01
6500	13388	4.610333	TCTGTATGCCTCTCTTCCACTTA	58.390	43.478	0.00	0.00	0.00	2.24
6560	13448	9.256228	TCTGATATTAGTTGTTCCAAGAGTAGT	57.744	33.333	0.00	0.00	0.00	2.73
6914	13802	9.607285	AAAAGTAAGCATTTAACACTTACATCG	57.393	29.630	17.32	0.00	45.24	3.84
7280	14169	5.126396	AGTAATGAGCCAAGCTTTGTTTC	57.874	39.130	0.00	0.00	39.88	2.78
7313	14202	0.979665	TGAGAACTCCCTGCTGAAGG	59.020	55.000	0.00	0.00	46.94	3.46
7370	14259	8.070034	AGGCAATGTCATAAATTTCATTCTGA	57.930	30.769	0.00	0.00	0.00	3.27
7383	14272	2.009051	CGCAACTGAGGCAATGTCATA	58.991	47.619	0.00	0.00	0.00	2.15
7517	14406	1.064803	CCAAGTGACTCGATCTCTCCG	59.935	57.143	0.00	0.00	30.65	4.63
7542	14431	2.979814	TGAGAGCTAGCGCCATTTAA	57.020	45.000	15.37	0.00	36.60	1.52
7646	14535	1.150536	TGGAAAGCTGGCCGAGTTT	59.849	52.632	0.00	0.00	0.00	2.66
7672	14561	2.224843	TGATCATCCCACTGTGTGCTTT	60.225	45.455	7.08	0.00	31.34	3.51
7782	14675	3.965347	AGGCGTTTACATGGTATACTCCT	59.035	43.478	2.25	3.64	0.00	3.69
7800	14695	2.159338	AGCTGCAAATACAATTCAGGCG	60.159	45.455	1.02	0.00	0.00	5.52
7801	14696	3.515330	AGCTGCAAATACAATTCAGGC	57.485	42.857	1.02	0.00	0.00	4.85
7812	14707	6.764308	ACACACATAAGATAAGCTGCAAAT	57.236	33.333	1.02	0.00	0.00	2.32
7921	14819	6.775939	ATATGCGAGAAATGTGTACATCAG	57.224	37.500	0.00	0.00	35.10	2.90
7925	14823	9.715123	CATAAAAATATGCGAGAAATGTGTACA	57.285	29.630	0.00	0.00	0.00	2.90
7985	14890	2.243810	TGGGGAAGGGAAAACATTTCG	58.756	47.619	0.00	0.00	0.00	3.46
7991	14896	0.330267	TCGGATGGGGAAGGGAAAAC	59.670	55.000	0.00	0.00	0.00	2.43
8029	14934	3.376935	ATCACCCTTCGCGGCTCAG	62.377	63.158	6.13	0.00	0.00	3.35
8031	14936	2.892425	CATCACCCTTCGCGGCTC	60.892	66.667	6.13	0.00	0.00	4.70
8035	14940	1.424493	GAGAAGCATCACCCTTCGCG	61.424	60.000	0.00	0.00	42.63	5.87
8052	14957	4.717629	TCGGCTGGCGACAACGAG	62.718	66.667	22.89	0.00	42.50	4.18
8059	14964	3.120105	CACTCTATCGGCTGGCGA	58.880	61.111	28.27	28.27	0.00	5.54
8060	14965	2.659897	GCACTCTATCGGCTGGCG	60.660	66.667	18.26	18.26	0.00	5.69
8061	14966	1.300542	GAGCACTCTATCGGCTGGC	60.301	63.158	0.00	0.00	38.15	4.85
8064	14969	0.754957	AGCAGAGCACTCTATCGGCT	60.755	55.000	0.00	2.27	41.27	5.52
8069	14974	0.979709	TGCCCAGCAGAGCACTCTAT	60.980	55.000	0.00	0.00	37.98	1.98
8087	14992	2.046892	CAACCTGTCTCCGGCCTG	60.047	66.667	0.00	0.00	0.00	4.85
8088	14993	3.322466	CCAACCTGTCTCCGGCCT	61.322	66.667	0.00	0.00	0.00	5.19
8089	14994	4.410400	CCCAACCTGTCTCCGGCC	62.410	72.222	0.00	0.00	0.00	6.13
8091	14996	2.606519	TCCCCAACCTGTCTCCGG	60.607	66.667	0.00	0.00	0.00	5.14
8143	15053	2.937873	GCTATACTGTTTCCAACGGCCA	60.938	50.000	2.24	0.00	41.56	5.36
8147	15057	9.687210	TTACTATATGCTATACTGTTTCCAACG	57.313	33.333	0.00	0.00	0.00	4.10
8201	16227	7.584847	CGTTTTCTTGCGAGTTCATTTAGTTAA	59.415	33.333	0.00	0.00	0.00	2.01
8216	16243	3.184379	TGACTCATCTTCGTTTTCTTGCG	59.816	43.478	0.00	0.00	0.00	4.85
8274	16301	4.722781	TGGTTGGCCTACTATTTAGCCTAA	59.277	41.667	17.03	0.00	45.94	2.69
8275	16302	4.300345	TGGTTGGCCTACTATTTAGCCTA	58.700	43.478	17.03	0.00	45.94	3.93
8276	16303	3.120108	TGGTTGGCCTACTATTTAGCCT	58.880	45.455	17.03	0.00	45.94	4.58
8277	16304	3.477530	CTGGTTGGCCTACTATTTAGCC	58.522	50.000	17.03	0.00	45.96	3.93
8278	16305	2.879026	GCTGGTTGGCCTACTATTTAGC	59.121	50.000	17.03	13.97	35.27	3.09
8292	16319	2.529780	TTGGAAAATGCAGCTGGTTG	57.470	45.000	17.12	0.00	0.00	3.77
8385	16412	5.349824	GCAGTCAGCCTTGTATTATTAGC	57.650	43.478	0.00	0.00	37.23	3.09
8411	16438	1.912043	ACAGAGGGAGTCCATTCTTGG	59.088	52.381	12.30	5.30	45.15	3.61
8412	16439	3.258971	GACAGAGGGAGTCCATTCTTG	57.741	52.381	12.30	6.92	34.83	3.02
8420	16447	2.569404	ACATTTCTGGACAGAGGGAGTC	59.431	50.000	1.92	0.00	38.88	3.36
8435	16462	2.069273	CCCACAGAGACGTCACATTTC	58.931	52.381	19.50	5.96	0.00	2.17
8442	16469	1.134560	GATGTACCCCACAGAGACGTC	59.865	57.143	7.70	7.70	41.51	4.34
8455	16484	5.711976	CCCATCCAATCCATAAAGATGTACC	59.288	44.000	0.00	0.00	33.95	3.34
8468	16497	1.141455	CCCATTTTGCCCATCCAATCC	59.859	52.381	0.00	0.00	0.00	3.01
8530	16560	1.412937	GCACCCCATCCCCAATTACAT	60.413	52.381	0.00	0.00	0.00	2.29
8554	16584	7.613022	TGGAGAAAGTAAAATAGTCGTCCTCTA	59.387	37.037	0.00	0.00	0.00	2.43
8558	16588	7.845066	AATGGAGAAAGTAAAATAGTCGTCC	57.155	36.000	0.00	0.00	0.00	4.79
8574	16604	8.690203	TGAGACACTTATTTTCAAATGGAGAA	57.310	30.769	0.00	0.00	0.00	2.87
8575	16605	8.567948	GTTGAGACACTTATTTTCAAATGGAGA	58.432	33.333	0.00	0.00	30.43	3.71

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.