Multiple sequence alignment - TraesCS6A01G409700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G409700 chr6A 100.000 2818 0 0 1 2818 613365481 613368298 0.000000e+00 5204
1 TraesCS6A01G409700 chr6A 94.185 1909 99 6 1 1903 395871774 395869872 0.000000e+00 2900
2 TraesCS6A01G409700 chr6A 94.226 814 35 6 1 803 162276193 162275381 0.000000e+00 1232
3 TraesCS6A01G409700 chr6A 79.583 240 35 10 2386 2621 68557276 68557047 2.910000e-35 159
4 TraesCS6A01G409700 chr2B 94.958 2400 105 7 1 2386 77332786 77335183 0.000000e+00 3747
5 TraesCS6A01G409700 chr6D 94.142 2424 99 24 1 2386 15118196 15120614 0.000000e+00 3650
6 TraesCS6A01G409700 chr4D 94.103 2391 99 13 1 2382 386931287 386933644 0.000000e+00 3596
7 TraesCS6A01G409700 chr6B 93.119 2398 130 11 1 2388 171789834 171787462 0.000000e+00 3482
8 TraesCS6A01G409700 chr7B 97.930 1739 33 1 643 2381 228682905 228681170 0.000000e+00 3009
9 TraesCS6A01G409700 chr7B 94.063 1398 77 4 504 1897 499717348 499715953 0.000000e+00 2117
10 TraesCS6A01G409700 chr7B 78.992 238 44 3 2386 2621 99290307 99290540 1.050000e-34 158
11 TraesCS6A01G409700 chr1A 95.381 1667 64 6 1 1658 565154009 565155671 0.000000e+00 2639
12 TraesCS6A01G409700 chr3A 95.202 1563 71 3 822 2382 55445528 55447088 0.000000e+00 2468
13 TraesCS6A01G409700 chr3B 94.058 1279 61 7 1112 2386 188482130 188483397 0.000000e+00 1927
14 TraesCS6A01G409700 chr3B 80.769 182 25 6 2386 2565 357432735 357432562 1.760000e-27 134
15 TraesCS6A01G409700 chr5A 95.755 801 33 1 1 801 225611299 225612098 0.000000e+00 1290
16 TraesCS6A01G409700 chr5A 77.391 230 37 8 2388 2615 50773176 50773392 3.810000e-24 122
17 TraesCS6A01G409700 chr3D 94.919 807 34 3 1 801 61930537 61931342 0.000000e+00 1256
18 TraesCS6A01G409700 chr3D 81.818 209 30 5 2388 2594 101544332 101544130 4.830000e-38 169
19 TraesCS6A01G409700 chr2D 78.439 269 43 12 2386 2647 609556684 609556424 8.080000e-36 161
20 TraesCS6A01G409700 chr2D 76.098 205 39 7 2386 2586 494475521 494475719 6.420000e-17 99
21 TraesCS6A01G409700 chr7D 77.154 267 48 10 2386 2647 360196380 360196122 2.930000e-30 143
22 TraesCS6A01G409700 chr7A 80.769 182 28 4 2386 2565 727927377 727927201 4.900000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G409700 chr6A 613365481 613368298 2817 False 5204 5204 100.000 1 2818 1 chr6A.!!$F1 2817
1 TraesCS6A01G409700 chr6A 395869872 395871774 1902 True 2900 2900 94.185 1 1903 1 chr6A.!!$R3 1902
2 TraesCS6A01G409700 chr6A 162275381 162276193 812 True 1232 1232 94.226 1 803 1 chr6A.!!$R2 802
3 TraesCS6A01G409700 chr2B 77332786 77335183 2397 False 3747 3747 94.958 1 2386 1 chr2B.!!$F1 2385
4 TraesCS6A01G409700 chr6D 15118196 15120614 2418 False 3650 3650 94.142 1 2386 1 chr6D.!!$F1 2385
5 TraesCS6A01G409700 chr4D 386931287 386933644 2357 False 3596 3596 94.103 1 2382 1 chr4D.!!$F1 2381
6 TraesCS6A01G409700 chr6B 171787462 171789834 2372 True 3482 3482 93.119 1 2388 1 chr6B.!!$R1 2387
7 TraesCS6A01G409700 chr7B 228681170 228682905 1735 True 3009 3009 97.930 643 2381 1 chr7B.!!$R1 1738
8 TraesCS6A01G409700 chr7B 499715953 499717348 1395 True 2117 2117 94.063 504 1897 1 chr7B.!!$R2 1393
9 TraesCS6A01G409700 chr1A 565154009 565155671 1662 False 2639 2639 95.381 1 1658 1 chr1A.!!$F1 1657
10 TraesCS6A01G409700 chr3A 55445528 55447088 1560 False 2468 2468 95.202 822 2382 1 chr3A.!!$F1 1560
11 TraesCS6A01G409700 chr3B 188482130 188483397 1267 False 1927 1927 94.058 1112 2386 1 chr3B.!!$F1 1274
12 TraesCS6A01G409700 chr5A 225611299 225612098 799 False 1290 1290 95.755 1 801 1 chr5A.!!$F2 800
13 TraesCS6A01G409700 chr3D 61930537 61931342 805 False 1256 1256 94.919 1 801 1 chr3D.!!$F1 800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 49 3.087781 GGGTACGACTCTTACTCTTGGT 58.912 50.000 0.0 0.0 0.00 3.67 F
586 593 3.324846 TGCAAGTCACTACTGAATGGTCT 59.675 43.478 0.0 0.0 35.62 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1485 1544 0.035739 TCTGCAGCAATCTCAGCACA 59.964 50.0 9.47 0.0 32.87 4.57 R
2530 2594 0.039527 GGAACACACATGGCGGAAAC 60.040 55.0 0.00 0.0 0.00 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 49 3.087781 GGGTACGACTCTTACTCTTGGT 58.912 50.000 0.00 0.00 0.00 3.67
345 352 8.160765 TGACATAAAGGATCAGGTACAAAAAGA 58.839 33.333 0.00 0.00 0.00 2.52
553 560 6.420638 TGATGATCCAGATGATGACAACTTT 58.579 36.000 0.00 0.00 32.41 2.66
586 593 3.324846 TGCAAGTCACTACTGAATGGTCT 59.675 43.478 0.00 0.00 35.62 3.85
607 614 4.927425 TCTAACTTTAGGCAACAACTAGCG 59.073 41.667 0.00 0.00 41.41 4.26
713 723 6.627508 CGGTGGTCTTCTTTTGTATAGCTAGT 60.628 42.308 0.00 0.00 0.00 2.57
1485 1544 2.125512 GCGAGGGTGCGAAGACAT 60.126 61.111 0.00 0.00 0.00 3.06
1752 1812 3.895232 AGTTGGTACTCAATGATCGCT 57.105 42.857 0.00 0.00 37.73 4.93
2024 2084 9.119329 CATATTTGAGAGTACGTGCTATTAGTC 57.881 37.037 6.01 0.00 0.00 2.59
2398 2462 6.774354 ACGAAGCGTTAGAACAATTAAAGA 57.226 33.333 0.00 0.00 36.35 2.52
2399 2463 6.587651 ACGAAGCGTTAGAACAATTAAAGAC 58.412 36.000 0.00 0.00 36.35 3.01
2400 2464 6.423001 ACGAAGCGTTAGAACAATTAAAGACT 59.577 34.615 0.00 0.00 36.35 3.24
2401 2465 6.732392 CGAAGCGTTAGAACAATTAAAGACTG 59.268 38.462 0.00 0.00 0.00 3.51
2402 2466 7.492352 AAGCGTTAGAACAATTAAAGACTGT 57.508 32.000 0.00 0.00 0.00 3.55
2403 2467 6.888430 AGCGTTAGAACAATTAAAGACTGTG 58.112 36.000 0.00 0.00 0.00 3.66
2404 2468 6.073222 AGCGTTAGAACAATTAAAGACTGTGG 60.073 38.462 0.00 0.00 0.00 4.17
2405 2469 6.077838 CGTTAGAACAATTAAAGACTGTGGC 58.922 40.000 0.00 0.00 0.00 5.01
2406 2470 6.379386 GTTAGAACAATTAAAGACTGTGGCC 58.621 40.000 0.00 0.00 0.00 5.36
2407 2471 4.469657 AGAACAATTAAAGACTGTGGCCA 58.530 39.130 0.00 0.00 0.00 5.36
2408 2472 5.079643 AGAACAATTAAAGACTGTGGCCAT 58.920 37.500 9.72 0.00 0.00 4.40
2409 2473 4.789012 ACAATTAAAGACTGTGGCCATG 57.211 40.909 9.72 8.09 0.00 3.66
2410 2474 4.406456 ACAATTAAAGACTGTGGCCATGA 58.594 39.130 9.72 0.00 0.00 3.07
2411 2475 4.218417 ACAATTAAAGACTGTGGCCATGAC 59.782 41.667 9.72 5.86 0.00 3.06
2412 2476 3.500448 TTAAAGACTGTGGCCATGACA 57.500 42.857 9.72 0.32 0.00 3.58
2413 2477 2.592102 AAAGACTGTGGCCATGACAT 57.408 45.000 9.72 0.00 0.00 3.06
2414 2478 1.830279 AAGACTGTGGCCATGACATG 58.170 50.000 9.72 8.56 0.00 3.21
2415 2479 0.694771 AGACTGTGGCCATGACATGT 59.305 50.000 9.72 0.00 0.00 3.21
2416 2480 1.908619 AGACTGTGGCCATGACATGTA 59.091 47.619 9.72 0.00 0.00 2.29
2417 2481 2.305635 AGACTGTGGCCATGACATGTAA 59.694 45.455 9.72 0.00 0.00 2.41
2418 2482 3.081061 GACTGTGGCCATGACATGTAAA 58.919 45.455 9.72 0.00 0.00 2.01
2419 2483 3.696051 GACTGTGGCCATGACATGTAAAT 59.304 43.478 9.72 0.00 0.00 1.40
2420 2484 3.444742 ACTGTGGCCATGACATGTAAATG 59.555 43.478 9.72 6.17 0.00 2.32
2421 2485 2.166050 TGTGGCCATGACATGTAAATGC 59.834 45.455 9.72 9.46 0.00 3.56
2422 2486 1.755959 TGGCCATGACATGTAAATGCC 59.244 47.619 19.90 19.90 0.00 4.40
2423 2487 2.034124 GGCCATGACATGTAAATGCCT 58.966 47.619 19.59 0.00 0.00 4.75
2424 2488 3.221771 GGCCATGACATGTAAATGCCTA 58.778 45.455 19.59 0.00 0.00 3.93
2425 2489 3.828451 GGCCATGACATGTAAATGCCTAT 59.172 43.478 19.59 0.00 0.00 2.57
2426 2490 4.321452 GGCCATGACATGTAAATGCCTATG 60.321 45.833 19.59 5.07 0.00 2.23
2427 2491 4.279169 GCCATGACATGTAAATGCCTATGT 59.721 41.667 14.26 0.00 36.54 2.29
2428 2492 5.221303 GCCATGACATGTAAATGCCTATGTT 60.221 40.000 14.26 0.00 34.18 2.71
2429 2493 6.683610 GCCATGACATGTAAATGCCTATGTTT 60.684 38.462 14.26 0.00 34.18 2.83
2430 2494 7.267128 CCATGACATGTAAATGCCTATGTTTT 58.733 34.615 14.26 0.00 34.18 2.43
2431 2495 7.223193 CCATGACATGTAAATGCCTATGTTTTG 59.777 37.037 14.26 0.00 34.18 2.44
2432 2496 6.629128 TGACATGTAAATGCCTATGTTTTGG 58.371 36.000 0.00 0.00 34.18 3.28
2438 2502 2.462503 GCCTATGTTTTGGCGACGA 58.537 52.632 0.00 0.00 39.71 4.20
2439 2503 1.014352 GCCTATGTTTTGGCGACGAT 58.986 50.000 0.00 0.00 39.71 3.73
2440 2504 2.206750 GCCTATGTTTTGGCGACGATA 58.793 47.619 0.00 0.00 39.71 2.92
2441 2505 2.221055 GCCTATGTTTTGGCGACGATAG 59.779 50.000 0.00 0.00 39.71 2.08
2442 2506 4.289527 GCCTATGTTTTGGCGACGATAGT 61.290 47.826 0.00 0.00 46.85 2.12
2443 2507 5.737497 GCCTATGTTTTGGCGACGATAGTT 61.737 45.833 0.00 0.00 45.10 2.24
2444 2508 7.150581 GCCTATGTTTTGGCGACGATAGTTT 62.151 44.000 0.00 0.00 45.10 2.66
2445 2509 7.879573 GCCTATGTTTTGGCGACGATAGTTTA 61.880 42.308 0.00 0.00 45.10 2.01
2446 2510 9.756683 GCCTATGTTTTGGCGACGATAGTTTAC 62.757 44.444 0.00 0.00 45.10 2.01
2462 2526 9.603298 CGATAGTTTACTATGCACTCGTATAAA 57.397 33.333 7.12 0.00 39.14 1.40
2464 2528 7.998753 AGTTTACTATGCACTCGTATAAACC 57.001 36.000 0.00 0.00 33.52 3.27
2465 2529 7.549839 AGTTTACTATGCACTCGTATAAACCA 58.450 34.615 0.00 0.00 33.52 3.67
2466 2530 7.705325 AGTTTACTATGCACTCGTATAAACCAG 59.295 37.037 0.00 0.00 33.52 4.00
2467 2531 5.847111 ACTATGCACTCGTATAAACCAGA 57.153 39.130 0.00 0.00 0.00 3.86
2468 2532 6.216801 ACTATGCACTCGTATAAACCAGAA 57.783 37.500 0.00 0.00 0.00 3.02
2469 2533 6.040878 ACTATGCACTCGTATAAACCAGAAC 58.959 40.000 0.00 0.00 0.00 3.01
2470 2534 4.260139 TGCACTCGTATAAACCAGAACA 57.740 40.909 0.00 0.00 0.00 3.18
2471 2535 4.633175 TGCACTCGTATAAACCAGAACAA 58.367 39.130 0.00 0.00 0.00 2.83
2472 2536 4.688879 TGCACTCGTATAAACCAGAACAAG 59.311 41.667 0.00 0.00 0.00 3.16
2473 2537 4.689345 GCACTCGTATAAACCAGAACAAGT 59.311 41.667 0.00 0.00 0.00 3.16
2474 2538 5.865552 GCACTCGTATAAACCAGAACAAGTA 59.134 40.000 0.00 0.00 0.00 2.24
2475 2539 6.034683 GCACTCGTATAAACCAGAACAAGTAG 59.965 42.308 0.00 0.00 0.00 2.57
2476 2540 7.088905 CACTCGTATAAACCAGAACAAGTAGT 58.911 38.462 0.00 0.00 0.00 2.73
2477 2541 7.061905 CACTCGTATAAACCAGAACAAGTAGTG 59.938 40.741 0.00 0.00 0.00 2.74
2478 2542 5.865552 TCGTATAAACCAGAACAAGTAGTGC 59.134 40.000 0.00 0.00 0.00 4.40
2479 2543 5.867716 CGTATAAACCAGAACAAGTAGTGCT 59.132 40.000 0.00 0.00 36.12 4.40
2480 2544 6.034683 CGTATAAACCAGAACAAGTAGTGCTC 59.965 42.308 0.00 0.00 32.01 4.26
2481 2545 3.838244 AACCAGAACAAGTAGTGCTCA 57.162 42.857 0.00 0.00 32.01 4.26
2482 2546 3.838244 ACCAGAACAAGTAGTGCTCAA 57.162 42.857 0.00 0.00 32.01 3.02
2483 2547 4.150897 ACCAGAACAAGTAGTGCTCAAA 57.849 40.909 0.00 0.00 32.01 2.69
2484 2548 4.130118 ACCAGAACAAGTAGTGCTCAAAG 58.870 43.478 0.00 0.00 32.01 2.77
2485 2549 4.141711 ACCAGAACAAGTAGTGCTCAAAGA 60.142 41.667 0.00 0.00 32.01 2.52
2486 2550 4.999950 CCAGAACAAGTAGTGCTCAAAGAT 59.000 41.667 0.00 0.00 32.01 2.40
2487 2551 5.471456 CCAGAACAAGTAGTGCTCAAAGATT 59.529 40.000 0.00 0.00 32.01 2.40
2488 2552 6.650807 CCAGAACAAGTAGTGCTCAAAGATTA 59.349 38.462 0.00 0.00 32.01 1.75
2489 2553 7.335422 CCAGAACAAGTAGTGCTCAAAGATTAT 59.665 37.037 0.00 0.00 32.01 1.28
2490 2554 8.725148 CAGAACAAGTAGTGCTCAAAGATTATT 58.275 33.333 0.00 0.00 32.01 1.40
2491 2555 9.289782 AGAACAAGTAGTGCTCAAAGATTATTT 57.710 29.630 0.00 0.00 25.26 1.40
2523 2587 9.935682 TTTATTTATTTCATTCAGCATCGAGAC 57.064 29.630 0.00 0.00 0.00 3.36
2524 2588 6.983474 TTTATTTCATTCAGCATCGAGACA 57.017 33.333 0.00 0.00 0.00 3.41
2525 2589 7.558161 TTTATTTCATTCAGCATCGAGACAT 57.442 32.000 0.00 0.00 0.00 3.06
2526 2590 8.661352 TTTATTTCATTCAGCATCGAGACATA 57.339 30.769 0.00 0.00 0.00 2.29
2527 2591 8.837788 TTATTTCATTCAGCATCGAGACATAT 57.162 30.769 0.00 0.00 0.00 1.78
2528 2592 9.927668 TTATTTCATTCAGCATCGAGACATATA 57.072 29.630 0.00 0.00 0.00 0.86
2530 2594 7.823149 TTCATTCAGCATCGAGACATATATG 57.177 36.000 11.29 11.29 0.00 1.78
2531 2595 6.928520 TCATTCAGCATCGAGACATATATGT 58.071 36.000 18.31 18.31 45.16 2.29
2532 2596 7.381323 TCATTCAGCATCGAGACATATATGTT 58.619 34.615 19.19 9.54 41.95 2.71
2533 2597 7.874528 TCATTCAGCATCGAGACATATATGTTT 59.125 33.333 19.19 13.94 41.95 2.83
2534 2598 7.643528 TTCAGCATCGAGACATATATGTTTC 57.356 36.000 21.08 21.08 41.95 2.78
2535 2599 6.159293 TCAGCATCGAGACATATATGTTTCC 58.841 40.000 23.59 13.54 41.95 3.13
2536 2600 5.061435 CAGCATCGAGACATATATGTTTCCG 59.939 44.000 23.59 21.68 41.95 4.30
2537 2601 4.201628 GCATCGAGACATATATGTTTCCGC 60.202 45.833 23.59 20.09 41.95 5.54
2538 2602 3.909430 TCGAGACATATATGTTTCCGCC 58.091 45.455 23.59 10.28 41.95 6.13
2539 2603 3.319689 TCGAGACATATATGTTTCCGCCA 59.680 43.478 23.59 10.09 41.95 5.69
2540 2604 4.021456 TCGAGACATATATGTTTCCGCCAT 60.021 41.667 23.59 0.00 41.95 4.40
2541 2605 4.091945 CGAGACATATATGTTTCCGCCATG 59.908 45.833 23.59 10.17 41.95 3.66
2542 2606 4.973168 AGACATATATGTTTCCGCCATGT 58.027 39.130 19.19 0.00 41.95 3.21
2543 2607 4.756642 AGACATATATGTTTCCGCCATGTG 59.243 41.667 19.19 0.00 41.95 3.21
2544 2608 4.460263 ACATATATGTTTCCGCCATGTGT 58.540 39.130 12.75 0.00 37.90 3.72
2545 2609 4.275689 ACATATATGTTTCCGCCATGTGTG 59.724 41.667 12.75 0.00 37.90 3.82
2546 2610 2.192664 TATGTTTCCGCCATGTGTGT 57.807 45.000 0.00 0.00 0.00 3.72
2547 2611 1.327303 ATGTTTCCGCCATGTGTGTT 58.673 45.000 0.00 0.00 0.00 3.32
2548 2612 0.665835 TGTTTCCGCCATGTGTGTTC 59.334 50.000 0.00 0.00 0.00 3.18
2549 2613 0.039527 GTTTCCGCCATGTGTGTTCC 60.040 55.000 0.00 0.00 0.00 3.62
2550 2614 1.511318 TTTCCGCCATGTGTGTTCCG 61.511 55.000 0.00 0.00 0.00 4.30
2551 2615 2.358125 CCGCCATGTGTGTTCCGA 60.358 61.111 0.00 0.00 0.00 4.55
2552 2616 1.745115 CCGCCATGTGTGTTCCGAT 60.745 57.895 0.00 0.00 0.00 4.18
2553 2617 1.705337 CCGCCATGTGTGTTCCGATC 61.705 60.000 0.00 0.00 0.00 3.69
2554 2618 0.740868 CGCCATGTGTGTTCCGATCT 60.741 55.000 0.00 0.00 0.00 2.75
2555 2619 1.470805 CGCCATGTGTGTTCCGATCTA 60.471 52.381 0.00 0.00 0.00 1.98
2556 2620 2.803133 CGCCATGTGTGTTCCGATCTAT 60.803 50.000 0.00 0.00 0.00 1.98
2557 2621 2.545526 GCCATGTGTGTTCCGATCTATG 59.454 50.000 0.00 0.00 0.00 2.23
2558 2622 3.797039 CCATGTGTGTTCCGATCTATGT 58.203 45.455 0.00 0.00 0.00 2.29
2559 2623 4.739436 GCCATGTGTGTTCCGATCTATGTA 60.739 45.833 0.00 0.00 0.00 2.29
2560 2624 4.984785 CCATGTGTGTTCCGATCTATGTAG 59.015 45.833 0.00 0.00 0.00 2.74
2561 2625 5.451937 CCATGTGTGTTCCGATCTATGTAGT 60.452 44.000 0.00 0.00 0.00 2.73
2562 2626 5.244785 TGTGTGTTCCGATCTATGTAGTC 57.755 43.478 0.00 0.00 0.00 2.59
2563 2627 4.703093 TGTGTGTTCCGATCTATGTAGTCA 59.297 41.667 0.00 0.00 0.00 3.41
2564 2628 5.163652 TGTGTGTTCCGATCTATGTAGTCAG 60.164 44.000 0.00 0.00 0.00 3.51
2565 2629 4.338400 TGTGTTCCGATCTATGTAGTCAGG 59.662 45.833 0.00 0.00 0.00 3.86
2566 2630 4.579340 GTGTTCCGATCTATGTAGTCAGGA 59.421 45.833 0.00 0.00 0.00 3.86
2567 2631 5.241949 GTGTTCCGATCTATGTAGTCAGGAT 59.758 44.000 0.00 0.00 0.00 3.24
2568 2632 5.241728 TGTTCCGATCTATGTAGTCAGGATG 59.758 44.000 0.00 0.00 37.54 3.51
2585 2649 6.768483 TCAGGATGACTATGTCAAAAACAGA 58.232 36.000 4.46 0.00 45.96 3.41
2586 2650 7.223584 TCAGGATGACTATGTCAAAAACAGAA 58.776 34.615 4.46 0.00 45.96 3.02
2587 2651 7.719193 TCAGGATGACTATGTCAAAAACAGAAA 59.281 33.333 4.46 0.00 45.96 2.52
2588 2652 7.805071 CAGGATGACTATGTCAAAAACAGAAAC 59.195 37.037 4.46 0.00 45.96 2.78
2589 2653 7.502226 AGGATGACTATGTCAAAAACAGAAACA 59.498 33.333 4.46 0.00 45.96 2.83
2590 2654 7.805071 GGATGACTATGTCAAAAACAGAAACAG 59.195 37.037 4.46 0.00 45.96 3.16
2591 2655 7.857734 TGACTATGTCAAAAACAGAAACAGA 57.142 32.000 0.00 0.00 42.37 3.41
2592 2656 8.450578 TGACTATGTCAAAAACAGAAACAGAT 57.549 30.769 0.00 0.00 42.37 2.90
2593 2657 8.344831 TGACTATGTCAAAAACAGAAACAGATG 58.655 33.333 0.00 0.00 42.37 2.90
2594 2658 8.450578 ACTATGTCAAAAACAGAAACAGATGA 57.549 30.769 0.00 0.00 42.37 2.92
2595 2659 8.902806 ACTATGTCAAAAACAGAAACAGATGAA 58.097 29.630 0.00 0.00 42.37 2.57
2596 2660 9.734620 CTATGTCAAAAACAGAAACAGATGAAA 57.265 29.630 0.00 0.00 42.37 2.69
2598 2662 8.824159 TGTCAAAAACAGAAACAGATGAAAAA 57.176 26.923 0.00 0.00 32.81 1.94
2599 2663 8.707839 TGTCAAAAACAGAAACAGATGAAAAAC 58.292 29.630 0.00 0.00 32.81 2.43
2600 2664 8.925700 GTCAAAAACAGAAACAGATGAAAAACT 58.074 29.630 0.00 0.00 0.00 2.66
2606 2670 9.788960 AACAGAAACAGATGAAAAACTAACTTC 57.211 29.630 0.00 0.00 0.00 3.01
2607 2671 8.956426 ACAGAAACAGATGAAAAACTAACTTCA 58.044 29.630 0.00 0.00 36.08 3.02
2608 2672 9.787532 CAGAAACAGATGAAAAACTAACTTCAA 57.212 29.630 0.00 0.00 35.31 2.69
2613 2677 9.396022 ACAGATGAAAAACTAACTTCAAGAAGA 57.604 29.630 16.16 0.00 40.79 2.87
2628 2692 9.463443 ACTTCAAGAAGAAAATAAACCAAATCG 57.537 29.630 16.16 0.00 40.79 3.34
2629 2693 8.810652 TTCAAGAAGAAAATAAACCAAATCGG 57.189 30.769 0.00 0.00 35.14 4.18
2630 2694 8.417884 TTCAAGAAGAAAATAAACCAAATCGGT 58.582 29.630 0.00 0.00 41.35 4.69
2641 2705 2.801063 CCAAATCGGTCAATCATGTGC 58.199 47.619 0.00 0.00 0.00 4.57
2642 2706 2.164017 CCAAATCGGTCAATCATGTGCA 59.836 45.455 0.00 0.00 0.00 4.57
2643 2707 3.181484 CCAAATCGGTCAATCATGTGCAT 60.181 43.478 0.00 0.00 0.00 3.96
2644 2708 3.703286 AATCGGTCAATCATGTGCATG 57.297 42.857 5.86 5.86 40.09 4.06
2645 2709 2.112380 TCGGTCAATCATGTGCATGT 57.888 45.000 11.38 0.00 39.72 3.21
2646 2710 3.258971 TCGGTCAATCATGTGCATGTA 57.741 42.857 11.38 0.00 39.72 2.29
2647 2711 3.604582 TCGGTCAATCATGTGCATGTAA 58.395 40.909 11.38 0.00 39.72 2.41
2648 2712 4.006319 TCGGTCAATCATGTGCATGTAAA 58.994 39.130 11.38 0.00 39.72 2.01
2649 2713 4.097714 CGGTCAATCATGTGCATGTAAAC 58.902 43.478 11.38 6.62 39.72 2.01
2650 2714 4.142622 CGGTCAATCATGTGCATGTAAACT 60.143 41.667 11.38 0.00 39.72 2.66
2651 2715 5.064579 CGGTCAATCATGTGCATGTAAACTA 59.935 40.000 11.38 0.00 39.72 2.24
2652 2716 6.403092 CGGTCAATCATGTGCATGTAAACTAA 60.403 38.462 11.38 0.00 39.72 2.24
2653 2717 6.747280 GGTCAATCATGTGCATGTAAACTAAC 59.253 38.462 11.38 3.75 39.72 2.34
2654 2718 6.747280 GTCAATCATGTGCATGTAAACTAACC 59.253 38.462 11.38 0.00 39.72 2.85
2655 2719 6.432472 TCAATCATGTGCATGTAAACTAACCA 59.568 34.615 11.38 0.00 39.72 3.67
2656 2720 7.122501 TCAATCATGTGCATGTAAACTAACCAT 59.877 33.333 11.38 0.00 39.72 3.55
2657 2721 8.404765 CAATCATGTGCATGTAAACTAACCATA 58.595 33.333 11.38 0.00 39.72 2.74
2658 2722 7.929941 TCATGTGCATGTAAACTAACCATAA 57.070 32.000 11.38 0.00 39.72 1.90
2659 2723 8.341892 TCATGTGCATGTAAACTAACCATAAA 57.658 30.769 11.38 0.00 39.72 1.40
2660 2724 8.965819 TCATGTGCATGTAAACTAACCATAAAT 58.034 29.630 11.38 0.00 39.72 1.40
2705 2769 4.906065 AAAAAGTAGAACCAAACCCGTC 57.094 40.909 0.00 0.00 0.00 4.79
2706 2770 3.564053 AAAGTAGAACCAAACCCGTCA 57.436 42.857 0.00 0.00 0.00 4.35
2707 2771 3.564053 AAGTAGAACCAAACCCGTCAA 57.436 42.857 0.00 0.00 0.00 3.18
2708 2772 3.782656 AGTAGAACCAAACCCGTCAAT 57.217 42.857 0.00 0.00 0.00 2.57
2709 2773 4.094830 AGTAGAACCAAACCCGTCAATT 57.905 40.909 0.00 0.00 0.00 2.32
2710 2774 5.231702 AGTAGAACCAAACCCGTCAATTA 57.768 39.130 0.00 0.00 0.00 1.40
2711 2775 5.812286 AGTAGAACCAAACCCGTCAATTAT 58.188 37.500 0.00 0.00 0.00 1.28
2712 2776 5.646360 AGTAGAACCAAACCCGTCAATTATG 59.354 40.000 0.00 0.00 0.00 1.90
2713 2777 4.403734 AGAACCAAACCCGTCAATTATGT 58.596 39.130 0.00 0.00 0.00 2.29
2714 2778 4.217550 AGAACCAAACCCGTCAATTATGTG 59.782 41.667 0.00 0.00 0.00 3.21
2715 2779 2.230266 ACCAAACCCGTCAATTATGTGC 59.770 45.455 0.00 0.00 0.00 4.57
2716 2780 2.230025 CCAAACCCGTCAATTATGTGCA 59.770 45.455 0.00 0.00 0.00 4.57
2717 2781 3.119173 CCAAACCCGTCAATTATGTGCAT 60.119 43.478 0.00 0.00 0.00 3.96
2718 2782 3.781079 AACCCGTCAATTATGTGCATG 57.219 42.857 0.00 0.00 0.00 4.06
2719 2783 1.405105 ACCCGTCAATTATGTGCATGC 59.595 47.619 11.82 11.82 0.00 4.06
2720 2784 1.404748 CCCGTCAATTATGTGCATGCA 59.595 47.619 18.46 18.46 0.00 3.96
2721 2785 2.159268 CCCGTCAATTATGTGCATGCAA 60.159 45.455 24.58 13.36 0.00 4.08
2722 2786 3.491276 CCCGTCAATTATGTGCATGCAAT 60.491 43.478 24.58 19.25 0.00 3.56
2724 2788 3.487942 CGTCAATTATGTGCATGCAATGG 59.512 43.478 24.58 10.16 46.86 3.16
2725 2789 3.246699 GTCAATTATGTGCATGCAATGGC 59.753 43.478 24.58 10.76 46.86 4.40
2726 2790 2.143008 ATTATGTGCATGCAATGGCG 57.857 45.000 24.58 0.00 46.86 5.69
2727 2791 1.101331 TTATGTGCATGCAATGGCGA 58.899 45.000 24.58 3.72 46.86 5.54
2728 2792 0.664224 TATGTGCATGCAATGGCGAG 59.336 50.000 24.58 0.00 46.86 5.03
2729 2793 1.033202 ATGTGCATGCAATGGCGAGA 61.033 50.000 24.58 0.00 46.86 4.04
2730 2794 1.242665 TGTGCATGCAATGGCGAGAA 61.243 50.000 24.58 0.00 46.86 2.87
2731 2795 0.101759 GTGCATGCAATGGCGAGAAT 59.898 50.000 24.58 0.00 46.86 2.40
2732 2796 0.382873 TGCATGCAATGGCGAGAATC 59.617 50.000 20.30 0.00 46.86 2.52
2733 2797 0.382873 GCATGCAATGGCGAGAATCA 59.617 50.000 14.21 0.00 46.86 2.57
2734 2798 1.202325 GCATGCAATGGCGAGAATCAA 60.202 47.619 14.21 0.00 46.86 2.57
2735 2799 2.727777 CATGCAATGGCGAGAATCAAG 58.272 47.619 0.00 0.00 45.35 3.02
2736 2800 0.452987 TGCAATGGCGAGAATCAAGC 59.547 50.000 0.00 0.00 45.35 4.01
2737 2801 0.590732 GCAATGGCGAGAATCAAGCG 60.591 55.000 0.00 0.00 33.17 4.68
2738 2802 1.009078 CAATGGCGAGAATCAAGCGA 58.991 50.000 0.00 0.00 33.17 4.93
2739 2803 1.600957 CAATGGCGAGAATCAAGCGAT 59.399 47.619 0.00 0.00 33.17 4.58
2740 2804 1.959042 ATGGCGAGAATCAAGCGATT 58.041 45.000 0.00 0.00 44.75 3.34
2741 2805 1.737838 TGGCGAGAATCAAGCGATTT 58.262 45.000 0.00 0.00 42.06 2.17
2742 2806 2.899976 TGGCGAGAATCAAGCGATTTA 58.100 42.857 0.00 0.00 42.06 1.40
2743 2807 3.266636 TGGCGAGAATCAAGCGATTTAA 58.733 40.909 0.00 0.00 42.06 1.52
2744 2808 3.876914 TGGCGAGAATCAAGCGATTTAAT 59.123 39.130 0.00 0.00 42.06 1.40
2745 2809 4.024893 TGGCGAGAATCAAGCGATTTAATC 60.025 41.667 0.00 0.00 42.06 1.75
2746 2810 4.458708 GCGAGAATCAAGCGATTTAATCC 58.541 43.478 0.00 0.00 42.06 3.01
2747 2811 4.692135 CGAGAATCAAGCGATTTAATCCG 58.308 43.478 0.00 0.00 42.06 4.18
2748 2812 4.209288 CGAGAATCAAGCGATTTAATCCGT 59.791 41.667 0.00 0.00 42.06 4.69
2749 2813 5.409643 AGAATCAAGCGATTTAATCCGTG 57.590 39.130 0.00 2.08 42.06 4.94
2750 2814 3.609103 ATCAAGCGATTTAATCCGTGC 57.391 42.857 0.00 0.00 0.00 5.34
2751 2815 2.627945 TCAAGCGATTTAATCCGTGCT 58.372 42.857 0.00 0.04 0.00 4.40
2752 2816 2.351418 TCAAGCGATTTAATCCGTGCTG 59.649 45.455 6.59 3.07 32.14 4.41
2753 2817 2.309528 AGCGATTTAATCCGTGCTGA 57.690 45.000 5.31 0.00 0.00 4.26
2754 2818 2.627945 AGCGATTTAATCCGTGCTGAA 58.372 42.857 5.31 0.00 0.00 3.02
2755 2819 3.206150 AGCGATTTAATCCGTGCTGAAT 58.794 40.909 5.31 0.00 0.00 2.57
2756 2820 3.627577 AGCGATTTAATCCGTGCTGAATT 59.372 39.130 5.31 0.00 0.00 2.17
2757 2821 4.814234 AGCGATTTAATCCGTGCTGAATTA 59.186 37.500 5.31 0.00 0.00 1.40
2758 2822 5.295787 AGCGATTTAATCCGTGCTGAATTAA 59.704 36.000 5.31 0.00 0.00 1.40
2759 2823 6.017109 AGCGATTTAATCCGTGCTGAATTAAT 60.017 34.615 5.31 0.00 0.00 1.40
2760 2824 6.636850 GCGATTTAATCCGTGCTGAATTAATT 59.363 34.615 0.00 0.00 0.00 1.40
2761 2825 7.149128 GCGATTTAATCCGTGCTGAATTAATTC 60.149 37.037 19.37 19.37 37.31 2.17
2762 2826 8.070171 CGATTTAATCCGTGCTGAATTAATTCT 58.930 33.333 24.77 7.64 37.67 2.40
2763 2827 9.736023 GATTTAATCCGTGCTGAATTAATTCTT 57.264 29.630 24.77 12.92 37.67 2.52
2764 2828 9.736023 ATTTAATCCGTGCTGAATTAATTCTTC 57.264 29.630 24.77 17.33 37.67 2.87
2765 2829 8.506168 TTAATCCGTGCTGAATTAATTCTTCT 57.494 30.769 24.77 6.33 37.67 2.85
2766 2830 7.396540 AATCCGTGCTGAATTAATTCTTCTT 57.603 32.000 24.77 8.03 37.67 2.52
2767 2831 6.817765 TCCGTGCTGAATTAATTCTTCTTT 57.182 33.333 24.77 0.00 37.67 2.52
2768 2832 6.842163 TCCGTGCTGAATTAATTCTTCTTTC 58.158 36.000 24.77 11.86 37.67 2.62
2769 2833 6.030228 CCGTGCTGAATTAATTCTTCTTTCC 58.970 40.000 24.77 8.84 37.67 3.13
2770 2834 6.127897 CCGTGCTGAATTAATTCTTCTTTCCT 60.128 38.462 24.77 0.00 37.67 3.36
2771 2835 6.963805 CGTGCTGAATTAATTCTTCTTTCCTC 59.036 38.462 24.77 0.36 37.67 3.71
2772 2836 7.361201 CGTGCTGAATTAATTCTTCTTTCCTCA 60.361 37.037 24.77 4.71 37.67 3.86
2773 2837 8.465201 GTGCTGAATTAATTCTTCTTTCCTCAT 58.535 33.333 24.77 0.00 37.67 2.90
2774 2838 9.028284 TGCTGAATTAATTCTTCTTTCCTCATT 57.972 29.630 24.77 0.00 37.67 2.57
2775 2839 9.513727 GCTGAATTAATTCTTCTTTCCTCATTC 57.486 33.333 24.77 0.00 37.67 2.67
2782 2846 7.771927 ATTCTTCTTTCCTCATTCATGTTGT 57.228 32.000 0.00 0.00 0.00 3.32
2783 2847 7.587037 TTCTTCTTTCCTCATTCATGTTGTT 57.413 32.000 0.00 0.00 0.00 2.83
2784 2848 7.587037 TCTTCTTTCCTCATTCATGTTGTTT 57.413 32.000 0.00 0.00 0.00 2.83
2785 2849 8.690203 TCTTCTTTCCTCATTCATGTTGTTTA 57.310 30.769 0.00 0.00 0.00 2.01
2786 2850 8.567948 TCTTCTTTCCTCATTCATGTTGTTTAC 58.432 33.333 0.00 0.00 0.00 2.01
2787 2851 7.815840 TCTTTCCTCATTCATGTTGTTTACA 57.184 32.000 0.00 0.00 41.97 2.41
2788 2852 7.648142 TCTTTCCTCATTCATGTTGTTTACAC 58.352 34.615 0.00 0.00 40.19 2.90
2789 2853 5.605564 TCCTCATTCATGTTGTTTACACG 57.394 39.130 0.00 0.00 40.19 4.49
2790 2854 5.301555 TCCTCATTCATGTTGTTTACACGA 58.698 37.500 0.00 0.00 40.19 4.35
2791 2855 5.178623 TCCTCATTCATGTTGTTTACACGAC 59.821 40.000 0.00 0.00 40.19 4.34
2792 2856 5.012655 TCATTCATGTTGTTTACACGACG 57.987 39.130 0.00 0.00 39.95 5.12
2793 2857 4.745620 TCATTCATGTTGTTTACACGACGA 59.254 37.500 0.00 0.00 39.95 4.20
2794 2858 4.702247 TTCATGTTGTTTACACGACGAG 57.298 40.909 0.00 0.00 39.95 4.18
2795 2859 3.967401 TCATGTTGTTTACACGACGAGA 58.033 40.909 0.00 0.00 39.95 4.04
2796 2860 4.361420 TCATGTTGTTTACACGACGAGAA 58.639 39.130 0.00 0.00 39.95 2.87
2797 2861 4.986034 TCATGTTGTTTACACGACGAGAAT 59.014 37.500 0.00 0.00 39.95 2.40
2798 2862 4.959631 TGTTGTTTACACGACGAGAATC 57.040 40.909 0.00 0.00 39.95 2.52
2799 2863 4.361420 TGTTGTTTACACGACGAGAATCA 58.639 39.130 0.00 0.00 39.95 2.57
2800 2864 4.804665 TGTTGTTTACACGACGAGAATCAA 59.195 37.500 0.00 1.75 39.95 2.57
2801 2865 5.051307 TGTTGTTTACACGACGAGAATCAAG 60.051 40.000 0.00 0.00 39.95 3.02
2802 2866 3.427528 TGTTTACACGACGAGAATCAAGC 59.572 43.478 0.00 0.00 33.17 4.01
2803 2867 1.891178 TACACGACGAGAATCAAGCG 58.109 50.000 0.00 0.00 33.17 4.68
2804 2868 0.240145 ACACGACGAGAATCAAGCGA 59.760 50.000 0.00 0.00 33.17 4.93
2805 2869 1.135373 ACACGACGAGAATCAAGCGAT 60.135 47.619 0.00 0.00 33.17 4.58
2806 2870 1.920574 CACGACGAGAATCAAGCGATT 59.079 47.619 0.00 0.00 44.75 3.34
2813 2877 2.799176 AATCAAGCGATTCCAGCCC 58.201 52.632 0.00 0.00 37.25 5.19
2814 2878 1.097547 AATCAAGCGATTCCAGCCCG 61.098 55.000 0.00 0.00 37.25 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
528 535 5.997843 AGTTGTCATCATCTGGATCATCAA 58.002 37.500 0.00 0.00 32.57 2.57
586 593 3.998341 CCGCTAGTTGTTGCCTAAAGTTA 59.002 43.478 0.00 0.00 0.00 2.24
607 614 3.746492 GGTACTCGGCAAACATATCATCC 59.254 47.826 0.00 0.00 0.00 3.51
713 723 1.098712 ACAAAAGAAGACCGCCGCAA 61.099 50.000 0.00 0.00 0.00 4.85
1485 1544 0.035739 TCTGCAGCAATCTCAGCACA 59.964 50.000 9.47 0.00 32.87 4.57
2187 2251 8.292444 ACTTTGGAATTGCATAGCTACATTAA 57.708 30.769 15.49 0.00 0.00 1.40
2388 2452 4.218417 GTCATGGCCACAGTCTTTAATTGT 59.782 41.667 8.16 0.00 0.00 2.71
2389 2453 4.218200 TGTCATGGCCACAGTCTTTAATTG 59.782 41.667 8.16 0.00 0.00 2.32
2390 2454 4.406456 TGTCATGGCCACAGTCTTTAATT 58.594 39.130 8.16 0.00 0.00 1.40
2391 2455 4.032960 TGTCATGGCCACAGTCTTTAAT 57.967 40.909 8.16 0.00 0.00 1.40
2392 2456 3.500448 TGTCATGGCCACAGTCTTTAA 57.500 42.857 8.16 0.00 0.00 1.52
2393 2457 3.244875 ACATGTCATGGCCACAGTCTTTA 60.245 43.478 8.16 0.00 33.60 1.85
2394 2458 2.165167 CATGTCATGGCCACAGTCTTT 58.835 47.619 8.16 0.00 0.00 2.52
2395 2459 1.074405 ACATGTCATGGCCACAGTCTT 59.926 47.619 8.16 0.00 33.60 3.01
2396 2460 0.694771 ACATGTCATGGCCACAGTCT 59.305 50.000 8.16 0.00 33.60 3.24
2397 2461 2.401583 TACATGTCATGGCCACAGTC 57.598 50.000 8.16 1.92 33.60 3.51
2398 2462 2.877097 TTACATGTCATGGCCACAGT 57.123 45.000 8.16 2.98 33.60 3.55
2399 2463 3.735820 GCATTTACATGTCATGGCCACAG 60.736 47.826 8.16 3.52 32.28 3.66
2400 2464 2.166050 GCATTTACATGTCATGGCCACA 59.834 45.455 8.16 0.93 32.28 4.17
2401 2465 2.481795 GGCATTTACATGTCATGGCCAC 60.482 50.000 23.93 0.00 37.48 5.01
2402 2466 1.755959 GGCATTTACATGTCATGGCCA 59.244 47.619 23.93 8.56 37.48 5.36
2403 2467 2.034124 AGGCATTTACATGTCATGGCC 58.966 47.619 27.74 23.49 42.92 5.36
2404 2468 4.279169 ACATAGGCATTTACATGTCATGGC 59.721 41.667 25.71 25.71 37.49 4.40
2405 2469 6.395426 AACATAGGCATTTACATGTCATGG 57.605 37.500 17.08 0.06 37.49 3.66
2406 2470 7.223193 CCAAAACATAGGCATTTACATGTCATG 59.777 37.037 11.41 11.41 37.49 3.07
2407 2471 7.267128 CCAAAACATAGGCATTTACATGTCAT 58.733 34.615 0.00 0.00 37.49 3.06
2408 2472 6.629128 CCAAAACATAGGCATTTACATGTCA 58.371 36.000 0.00 0.00 37.49 3.58
2421 2485 3.454375 ACTATCGTCGCCAAAACATAGG 58.546 45.455 0.00 0.00 0.00 2.57
2422 2486 5.464965 AAACTATCGTCGCCAAAACATAG 57.535 39.130 0.00 0.00 0.00 2.23
2423 2487 6.101332 AGTAAACTATCGTCGCCAAAACATA 58.899 36.000 0.00 0.00 0.00 2.29
2424 2488 4.933400 AGTAAACTATCGTCGCCAAAACAT 59.067 37.500 0.00 0.00 0.00 2.71
2425 2489 4.309099 AGTAAACTATCGTCGCCAAAACA 58.691 39.130 0.00 0.00 0.00 2.83
2426 2490 4.916099 AGTAAACTATCGTCGCCAAAAC 57.084 40.909 0.00 0.00 0.00 2.43
2427 2491 5.005971 GCATAGTAAACTATCGTCGCCAAAA 59.994 40.000 0.00 0.00 37.07 2.44
2428 2492 4.505191 GCATAGTAAACTATCGTCGCCAAA 59.495 41.667 0.00 0.00 37.07 3.28
2429 2493 4.046462 GCATAGTAAACTATCGTCGCCAA 58.954 43.478 0.00 0.00 37.07 4.52
2430 2494 3.067040 TGCATAGTAAACTATCGTCGCCA 59.933 43.478 0.00 0.00 37.07 5.69
2431 2495 3.424529 GTGCATAGTAAACTATCGTCGCC 59.575 47.826 0.00 0.00 37.07 5.54
2432 2496 4.288531 AGTGCATAGTAAACTATCGTCGC 58.711 43.478 0.00 2.25 37.07 5.19
2433 2497 4.607646 CGAGTGCATAGTAAACTATCGTCG 59.392 45.833 0.00 3.54 37.07 5.12
2434 2498 5.508872 ACGAGTGCATAGTAAACTATCGTC 58.491 41.667 8.98 0.61 35.53 4.20
2435 2499 5.496133 ACGAGTGCATAGTAAACTATCGT 57.504 39.130 8.98 8.98 37.07 3.73
2436 2500 9.603298 TTTATACGAGTGCATAGTAAACTATCG 57.397 33.333 0.00 4.50 37.07 2.92
2438 2502 9.688592 GGTTTATACGAGTGCATAGTAAACTAT 57.311 33.333 0.00 0.00 39.61 2.12
2439 2503 8.685427 TGGTTTATACGAGTGCATAGTAAACTA 58.315 33.333 0.00 0.00 33.43 2.24
2440 2504 7.549839 TGGTTTATACGAGTGCATAGTAAACT 58.450 34.615 0.00 0.00 33.43 2.66
2441 2505 7.703621 TCTGGTTTATACGAGTGCATAGTAAAC 59.296 37.037 0.00 1.09 32.51 2.01
2442 2506 7.774134 TCTGGTTTATACGAGTGCATAGTAAA 58.226 34.615 0.00 0.00 32.51 2.01
2443 2507 7.337480 TCTGGTTTATACGAGTGCATAGTAA 57.663 36.000 0.00 0.00 32.51 2.24
2444 2508 6.947644 TCTGGTTTATACGAGTGCATAGTA 57.052 37.500 0.00 0.00 32.51 1.82
2445 2509 5.847111 TCTGGTTTATACGAGTGCATAGT 57.153 39.130 0.00 0.00 32.51 2.12
2446 2510 6.040247 TGTTCTGGTTTATACGAGTGCATAG 58.960 40.000 0.00 0.00 32.51 2.23
2447 2511 5.968254 TGTTCTGGTTTATACGAGTGCATA 58.032 37.500 0.00 0.00 32.51 3.14
2448 2512 4.827692 TGTTCTGGTTTATACGAGTGCAT 58.172 39.130 0.00 0.00 32.51 3.96
2449 2513 4.260139 TGTTCTGGTTTATACGAGTGCA 57.740 40.909 0.00 0.00 32.51 4.57
2450 2514 4.689345 ACTTGTTCTGGTTTATACGAGTGC 59.311 41.667 0.00 0.00 34.71 4.40
2451 2515 7.061905 CACTACTTGTTCTGGTTTATACGAGTG 59.938 40.741 0.00 0.00 36.27 3.51
2452 2516 7.088905 CACTACTTGTTCTGGTTTATACGAGT 58.911 38.462 0.00 0.00 38.46 4.18
2453 2517 6.034683 GCACTACTTGTTCTGGTTTATACGAG 59.965 42.308 0.00 0.00 0.00 4.18
2454 2518 5.865552 GCACTACTTGTTCTGGTTTATACGA 59.134 40.000 0.00 0.00 0.00 3.43
2455 2519 5.867716 AGCACTACTTGTTCTGGTTTATACG 59.132 40.000 0.00 0.00 0.00 3.06
2456 2520 6.872020 TGAGCACTACTTGTTCTGGTTTATAC 59.128 38.462 0.00 0.00 36.43 1.47
2457 2521 6.999950 TGAGCACTACTTGTTCTGGTTTATA 58.000 36.000 0.00 0.00 36.43 0.98
2458 2522 5.865085 TGAGCACTACTTGTTCTGGTTTAT 58.135 37.500 0.00 0.00 36.43 1.40
2459 2523 5.284861 TGAGCACTACTTGTTCTGGTTTA 57.715 39.130 0.00 0.00 36.43 2.01
2460 2524 4.150897 TGAGCACTACTTGTTCTGGTTT 57.849 40.909 0.00 0.00 36.43 3.27
2461 2525 3.838244 TGAGCACTACTTGTTCTGGTT 57.162 42.857 0.00 0.00 36.43 3.67
2462 2526 3.838244 TTGAGCACTACTTGTTCTGGT 57.162 42.857 0.00 0.00 36.43 4.00
2463 2527 4.380531 TCTTTGAGCACTACTTGTTCTGG 58.619 43.478 0.00 0.00 36.43 3.86
2464 2528 6.551385 AATCTTTGAGCACTACTTGTTCTG 57.449 37.500 0.00 0.00 36.43 3.02
2465 2529 8.854614 AATAATCTTTGAGCACTACTTGTTCT 57.145 30.769 0.00 0.00 36.43 3.01
2497 2561 9.935682 GTCTCGATGCTGAATGAAATAAATAAA 57.064 29.630 0.00 0.00 0.00 1.40
2498 2562 9.108284 TGTCTCGATGCTGAATGAAATAAATAA 57.892 29.630 0.00 0.00 0.00 1.40
2499 2563 8.661352 TGTCTCGATGCTGAATGAAATAAATA 57.339 30.769 0.00 0.00 0.00 1.40
2500 2564 7.558161 TGTCTCGATGCTGAATGAAATAAAT 57.442 32.000 0.00 0.00 0.00 1.40
2501 2565 6.983474 TGTCTCGATGCTGAATGAAATAAA 57.017 33.333 0.00 0.00 0.00 1.40
2502 2566 8.837788 ATATGTCTCGATGCTGAATGAAATAA 57.162 30.769 0.00 0.00 0.00 1.40
2504 2568 8.880750 CATATATGTCTCGATGCTGAATGAAAT 58.119 33.333 4.43 0.00 0.00 2.17
2505 2569 7.874528 ACATATATGTCTCGATGCTGAATGAAA 59.125 33.333 12.75 0.00 35.87 2.69
2506 2570 7.381323 ACATATATGTCTCGATGCTGAATGAA 58.619 34.615 12.75 0.00 35.87 2.57
2507 2571 6.928520 ACATATATGTCTCGATGCTGAATGA 58.071 36.000 12.75 0.00 35.87 2.57
2508 2572 7.592439 AACATATATGTCTCGATGCTGAATG 57.408 36.000 18.52 0.00 40.80 2.67
2509 2573 7.332926 GGAAACATATATGTCTCGATGCTGAAT 59.667 37.037 18.52 0.00 40.80 2.57
2510 2574 6.646653 GGAAACATATATGTCTCGATGCTGAA 59.353 38.462 18.52 0.00 40.80 3.02
2511 2575 6.159293 GGAAACATATATGTCTCGATGCTGA 58.841 40.000 18.52 0.00 40.80 4.26
2512 2576 5.061435 CGGAAACATATATGTCTCGATGCTG 59.939 44.000 18.52 3.13 40.80 4.41
2513 2577 5.164233 CGGAAACATATATGTCTCGATGCT 58.836 41.667 18.52 0.00 40.80 3.79
2514 2578 4.201628 GCGGAAACATATATGTCTCGATGC 60.202 45.833 25.70 19.09 40.80 3.91
2515 2579 4.327357 GGCGGAAACATATATGTCTCGATG 59.673 45.833 25.70 15.13 40.80 3.84
2516 2580 4.021456 TGGCGGAAACATATATGTCTCGAT 60.021 41.667 25.70 9.44 40.80 3.59
2517 2581 3.319689 TGGCGGAAACATATATGTCTCGA 59.680 43.478 25.70 12.46 40.80 4.04
2518 2582 3.649073 TGGCGGAAACATATATGTCTCG 58.351 45.455 18.52 20.09 40.80 4.04
2519 2583 4.997395 ACATGGCGGAAACATATATGTCTC 59.003 41.667 18.52 14.23 40.80 3.36
2520 2584 4.756642 CACATGGCGGAAACATATATGTCT 59.243 41.667 18.52 4.94 40.80 3.41
2521 2585 4.515191 ACACATGGCGGAAACATATATGTC 59.485 41.667 18.52 7.35 40.80 3.06
2522 2586 4.275689 CACACATGGCGGAAACATATATGT 59.724 41.667 12.75 12.75 44.20 2.29
2523 2587 4.275689 ACACACATGGCGGAAACATATATG 59.724 41.667 11.29 11.29 0.00 1.78
2524 2588 4.460263 ACACACATGGCGGAAACATATAT 58.540 39.130 0.00 0.00 0.00 0.86
2525 2589 3.879998 ACACACATGGCGGAAACATATA 58.120 40.909 0.00 0.00 0.00 0.86
2526 2590 2.722094 ACACACATGGCGGAAACATAT 58.278 42.857 0.00 0.00 0.00 1.78
2527 2591 2.192664 ACACACATGGCGGAAACATA 57.807 45.000 0.00 0.00 0.00 2.29
2528 2592 1.269448 GAACACACATGGCGGAAACAT 59.731 47.619 0.00 0.00 0.00 2.71
2529 2593 0.665835 GAACACACATGGCGGAAACA 59.334 50.000 0.00 0.00 0.00 2.83
2530 2594 0.039527 GGAACACACATGGCGGAAAC 60.040 55.000 0.00 0.00 0.00 2.78
2531 2595 1.511318 CGGAACACACATGGCGGAAA 61.511 55.000 0.00 0.00 0.00 3.13
2532 2596 1.963855 CGGAACACACATGGCGGAA 60.964 57.895 0.00 0.00 0.00 4.30
2533 2597 2.178876 ATCGGAACACACATGGCGGA 62.179 55.000 0.00 0.00 0.00 5.54
2534 2598 1.705337 GATCGGAACACACATGGCGG 61.705 60.000 0.00 0.00 0.00 6.13
2535 2599 0.740868 AGATCGGAACACACATGGCG 60.741 55.000 0.00 0.00 0.00 5.69
2536 2600 2.309528 TAGATCGGAACACACATGGC 57.690 50.000 0.00 0.00 0.00 4.40
2537 2601 3.797039 ACATAGATCGGAACACACATGG 58.203 45.455 0.00 0.00 0.00 3.66
2538 2602 5.592054 ACTACATAGATCGGAACACACATG 58.408 41.667 0.00 0.00 0.00 3.21
2539 2603 5.359860 TGACTACATAGATCGGAACACACAT 59.640 40.000 0.00 0.00 0.00 3.21
2540 2604 4.703093 TGACTACATAGATCGGAACACACA 59.297 41.667 0.00 0.00 0.00 3.72
2541 2605 5.244785 TGACTACATAGATCGGAACACAC 57.755 43.478 0.00 0.00 0.00 3.82
2542 2606 4.338400 CCTGACTACATAGATCGGAACACA 59.662 45.833 0.00 0.00 0.00 3.72
2543 2607 4.579340 TCCTGACTACATAGATCGGAACAC 59.421 45.833 0.00 0.00 0.00 3.32
2544 2608 4.788679 TCCTGACTACATAGATCGGAACA 58.211 43.478 0.00 0.00 0.00 3.18
2545 2609 5.473846 TCATCCTGACTACATAGATCGGAAC 59.526 44.000 0.00 0.00 0.00 3.62
2546 2610 5.473846 GTCATCCTGACTACATAGATCGGAA 59.526 44.000 0.07 0.00 43.73 4.30
2547 2611 5.004448 GTCATCCTGACTACATAGATCGGA 58.996 45.833 0.07 0.00 43.73 4.55
2548 2612 5.303747 GTCATCCTGACTACATAGATCGG 57.696 47.826 0.07 0.00 43.73 4.18
2559 2623 6.533730 TGTTTTTGACATAGTCATCCTGACT 58.466 36.000 13.77 13.77 45.71 3.41
2560 2624 6.650807 TCTGTTTTTGACATAGTCATCCTGAC 59.349 38.462 0.12 0.00 42.40 3.51
2561 2625 6.768483 TCTGTTTTTGACATAGTCATCCTGA 58.232 36.000 0.12 0.00 42.40 3.86
2562 2626 7.439157 TTCTGTTTTTGACATAGTCATCCTG 57.561 36.000 0.12 0.00 42.40 3.86
2563 2627 7.502226 TGTTTCTGTTTTTGACATAGTCATCCT 59.498 33.333 0.12 0.00 42.40 3.24
2564 2628 7.648142 TGTTTCTGTTTTTGACATAGTCATCC 58.352 34.615 0.12 0.00 42.40 3.51
2565 2629 8.559536 TCTGTTTCTGTTTTTGACATAGTCATC 58.440 33.333 0.12 0.00 42.40 2.92
2566 2630 8.450578 TCTGTTTCTGTTTTTGACATAGTCAT 57.549 30.769 0.12 0.00 42.40 3.06
2567 2631 7.857734 TCTGTTTCTGTTTTTGACATAGTCA 57.142 32.000 0.00 0.00 41.09 3.41
2568 2632 8.559536 TCATCTGTTTCTGTTTTTGACATAGTC 58.440 33.333 0.00 0.00 37.69 2.59
2569 2633 8.450578 TCATCTGTTTCTGTTTTTGACATAGT 57.549 30.769 0.00 0.00 37.69 2.12
2570 2634 9.734620 TTTCATCTGTTTCTGTTTTTGACATAG 57.265 29.630 0.00 0.00 37.69 2.23
2572 2636 9.434420 TTTTTCATCTGTTTCTGTTTTTGACAT 57.566 25.926 0.00 0.00 37.69 3.06
2573 2637 8.707839 GTTTTTCATCTGTTTCTGTTTTTGACA 58.292 29.630 0.00 0.00 36.65 3.58
2574 2638 8.925700 AGTTTTTCATCTGTTTCTGTTTTTGAC 58.074 29.630 0.00 0.00 0.00 3.18
2580 2644 9.788960 GAAGTTAGTTTTTCATCTGTTTCTGTT 57.211 29.630 0.00 0.00 0.00 3.16
2581 2645 8.956426 TGAAGTTAGTTTTTCATCTGTTTCTGT 58.044 29.630 0.00 0.00 0.00 3.41
2582 2646 9.787532 TTGAAGTTAGTTTTTCATCTGTTTCTG 57.212 29.630 0.00 0.00 33.68 3.02
2587 2651 9.396022 TCTTCTTGAAGTTAGTTTTTCATCTGT 57.604 29.630 9.80 0.00 33.68 3.41
2602 2666 9.463443 CGATTTGGTTTATTTTCTTCTTGAAGT 57.537 29.630 9.80 0.00 35.89 3.01
2603 2667 8.915654 CCGATTTGGTTTATTTTCTTCTTGAAG 58.084 33.333 4.13 4.13 35.89 3.02
2604 2668 8.810652 CCGATTTGGTTTATTTTCTTCTTGAA 57.189 30.769 0.00 0.00 0.00 2.69
2619 2683 8.988641 CATGCACATGATTGACCGATTTGGTT 62.989 42.308 4.57 0.00 46.17 3.67
2621 2685 2.164017 TGCACATGATTGACCGATTTGG 59.836 45.455 0.00 0.00 46.41 3.28
2622 2686 3.490800 TGCACATGATTGACCGATTTG 57.509 42.857 0.00 0.00 0.00 2.32
2623 2687 3.444742 ACATGCACATGATTGACCGATTT 59.555 39.130 17.19 0.00 41.20 2.17
2624 2688 3.018856 ACATGCACATGATTGACCGATT 58.981 40.909 17.19 0.00 41.20 3.34
2625 2689 2.646930 ACATGCACATGATTGACCGAT 58.353 42.857 17.19 0.00 41.20 4.18
2626 2690 2.112380 ACATGCACATGATTGACCGA 57.888 45.000 17.19 0.00 41.20 4.69
2627 2691 4.097714 GTTTACATGCACATGATTGACCG 58.902 43.478 17.19 0.00 41.20 4.79
2628 2692 5.314923 AGTTTACATGCACATGATTGACC 57.685 39.130 17.19 0.82 41.20 4.02
2629 2693 6.747280 GGTTAGTTTACATGCACATGATTGAC 59.253 38.462 17.19 9.49 41.20 3.18
2630 2694 6.432472 TGGTTAGTTTACATGCACATGATTGA 59.568 34.615 17.19 0.00 41.20 2.57
2631 2695 6.619744 TGGTTAGTTTACATGCACATGATTG 58.380 36.000 17.19 0.00 41.20 2.67
2632 2696 6.832520 TGGTTAGTTTACATGCACATGATT 57.167 33.333 17.19 0.00 41.20 2.57
2633 2697 8.518430 TTATGGTTAGTTTACATGCACATGAT 57.482 30.769 17.19 4.61 41.20 2.45
2634 2698 7.929941 TTATGGTTAGTTTACATGCACATGA 57.070 32.000 17.19 0.00 41.20 3.07
2684 2748 4.271661 TGACGGGTTTGGTTCTACTTTTT 58.728 39.130 0.00 0.00 0.00 1.94
2685 2749 3.888583 TGACGGGTTTGGTTCTACTTTT 58.111 40.909 0.00 0.00 0.00 2.27
2686 2750 3.564053 TGACGGGTTTGGTTCTACTTT 57.436 42.857 0.00 0.00 0.00 2.66
2687 2751 3.564053 TTGACGGGTTTGGTTCTACTT 57.436 42.857 0.00 0.00 0.00 2.24
2688 2752 3.782656 ATTGACGGGTTTGGTTCTACT 57.217 42.857 0.00 0.00 0.00 2.57
2689 2753 5.413523 ACATAATTGACGGGTTTGGTTCTAC 59.586 40.000 0.00 0.00 0.00 2.59
2690 2754 5.413213 CACATAATTGACGGGTTTGGTTCTA 59.587 40.000 0.00 0.00 0.00 2.10
2691 2755 4.217550 CACATAATTGACGGGTTTGGTTCT 59.782 41.667 0.00 0.00 0.00 3.01
2692 2756 4.481463 CACATAATTGACGGGTTTGGTTC 58.519 43.478 0.00 0.00 0.00 3.62
2693 2757 3.305744 GCACATAATTGACGGGTTTGGTT 60.306 43.478 0.00 0.00 0.00 3.67
2694 2758 2.230266 GCACATAATTGACGGGTTTGGT 59.770 45.455 0.00 0.00 0.00 3.67
2695 2759 2.230025 TGCACATAATTGACGGGTTTGG 59.770 45.455 0.00 0.00 0.00 3.28
2696 2760 3.567576 TGCACATAATTGACGGGTTTG 57.432 42.857 0.00 0.00 0.00 2.93
2697 2761 3.675775 GCATGCACATAATTGACGGGTTT 60.676 43.478 14.21 0.00 0.00 3.27
2698 2762 2.159254 GCATGCACATAATTGACGGGTT 60.159 45.455 14.21 0.00 0.00 4.11
2699 2763 1.405105 GCATGCACATAATTGACGGGT 59.595 47.619 14.21 0.00 0.00 5.28
2700 2764 1.404748 TGCATGCACATAATTGACGGG 59.595 47.619 18.46 0.00 0.00 5.28
2701 2765 2.847959 TGCATGCACATAATTGACGG 57.152 45.000 18.46 0.00 0.00 4.79
2702 2766 3.487942 CCATTGCATGCACATAATTGACG 59.512 43.478 22.58 0.00 0.00 4.35
2703 2767 3.246699 GCCATTGCATGCACATAATTGAC 59.753 43.478 22.58 0.38 37.47 3.18
2704 2768 3.459145 GCCATTGCATGCACATAATTGA 58.541 40.909 22.58 2.84 37.47 2.57
2705 2769 2.219903 CGCCATTGCATGCACATAATTG 59.780 45.455 22.58 8.33 37.32 2.32
2706 2770 2.101082 TCGCCATTGCATGCACATAATT 59.899 40.909 22.58 0.00 37.32 1.40
2707 2771 1.682323 TCGCCATTGCATGCACATAAT 59.318 42.857 22.58 8.52 37.32 1.28
2708 2772 1.065851 CTCGCCATTGCATGCACATAA 59.934 47.619 22.58 5.97 37.32 1.90
2709 2773 0.664224 CTCGCCATTGCATGCACATA 59.336 50.000 22.58 6.42 37.32 2.29
2710 2774 1.033202 TCTCGCCATTGCATGCACAT 61.033 50.000 22.58 14.22 37.32 3.21
2711 2775 1.242665 TTCTCGCCATTGCATGCACA 61.243 50.000 22.58 12.41 37.32 4.57
2712 2776 0.101759 ATTCTCGCCATTGCATGCAC 59.898 50.000 22.58 8.03 37.32 4.57
2713 2777 0.382873 GATTCTCGCCATTGCATGCA 59.617 50.000 18.46 18.46 37.32 3.96
2714 2778 0.382873 TGATTCTCGCCATTGCATGC 59.617 50.000 11.82 11.82 37.32 4.06
2715 2779 2.727777 CTTGATTCTCGCCATTGCATG 58.272 47.619 0.00 0.00 37.32 4.06
2716 2780 1.066605 GCTTGATTCTCGCCATTGCAT 59.933 47.619 0.00 0.00 37.32 3.96
2717 2781 0.452987 GCTTGATTCTCGCCATTGCA 59.547 50.000 0.00 0.00 37.32 4.08
2718 2782 0.590732 CGCTTGATTCTCGCCATTGC 60.591 55.000 0.00 0.00 0.00 3.56
2719 2783 1.009078 TCGCTTGATTCTCGCCATTG 58.991 50.000 0.00 0.00 0.00 2.82
2720 2784 1.959042 ATCGCTTGATTCTCGCCATT 58.041 45.000 0.00 0.00 0.00 3.16
2721 2785 1.959042 AATCGCTTGATTCTCGCCAT 58.041 45.000 0.00 0.00 37.83 4.40
2722 2786 1.737838 AAATCGCTTGATTCTCGCCA 58.262 45.000 0.00 0.00 41.45 5.69
2723 2787 3.944422 TTAAATCGCTTGATTCTCGCC 57.056 42.857 0.00 0.00 41.45 5.54
2724 2788 4.458708 GGATTAAATCGCTTGATTCTCGC 58.541 43.478 0.00 0.00 41.45 5.03
2725 2789 4.209288 ACGGATTAAATCGCTTGATTCTCG 59.791 41.667 0.00 0.00 41.45 4.04
2726 2790 5.435557 CACGGATTAAATCGCTTGATTCTC 58.564 41.667 0.00 0.00 41.45 2.87
2727 2791 4.260784 GCACGGATTAAATCGCTTGATTCT 60.261 41.667 0.00 0.00 41.45 2.40
2728 2792 3.968724 GCACGGATTAAATCGCTTGATTC 59.031 43.478 0.00 0.00 41.45 2.52
2729 2793 3.627577 AGCACGGATTAAATCGCTTGATT 59.372 39.130 0.00 0.00 44.16 2.57
2730 2794 3.002656 CAGCACGGATTAAATCGCTTGAT 59.997 43.478 0.00 0.00 0.00 2.57
2731 2795 2.351418 CAGCACGGATTAAATCGCTTGA 59.649 45.455 0.00 0.00 0.00 3.02
2732 2796 2.351418 TCAGCACGGATTAAATCGCTTG 59.649 45.455 0.00 0.00 0.00 4.01
2733 2797 2.627945 TCAGCACGGATTAAATCGCTT 58.372 42.857 0.00 0.00 0.00 4.68
2734 2798 2.309528 TCAGCACGGATTAAATCGCT 57.690 45.000 0.00 0.00 0.00 4.93
2735 2799 3.609103 ATTCAGCACGGATTAAATCGC 57.391 42.857 0.00 0.00 0.00 4.58
2736 2800 8.070171 AGAATTAATTCAGCACGGATTAAATCG 58.930 33.333 26.02 0.23 39.23 3.34
2737 2801 9.736023 AAGAATTAATTCAGCACGGATTAAATC 57.264 29.630 26.02 5.65 39.23 2.17
2738 2802 9.736023 GAAGAATTAATTCAGCACGGATTAAAT 57.264 29.630 26.02 1.71 39.23 1.40
2739 2803 8.956426 AGAAGAATTAATTCAGCACGGATTAAA 58.044 29.630 26.02 0.00 39.23 1.52
2740 2804 8.506168 AGAAGAATTAATTCAGCACGGATTAA 57.494 30.769 26.02 2.97 39.23 1.40
2741 2805 8.506168 AAGAAGAATTAATTCAGCACGGATTA 57.494 30.769 26.02 0.00 39.23 1.75
2742 2806 7.396540 AAGAAGAATTAATTCAGCACGGATT 57.603 32.000 26.02 11.64 39.23 3.01
2743 2807 7.396540 AAAGAAGAATTAATTCAGCACGGAT 57.603 32.000 26.02 4.08 39.23 4.18
2744 2808 6.128007 GGAAAGAAGAATTAATTCAGCACGGA 60.128 38.462 26.02 0.00 39.23 4.69
2745 2809 6.030228 GGAAAGAAGAATTAATTCAGCACGG 58.970 40.000 26.02 0.00 39.23 4.94
2746 2810 6.846350 AGGAAAGAAGAATTAATTCAGCACG 58.154 36.000 26.02 0.00 39.23 5.34
2747 2811 7.820648 TGAGGAAAGAAGAATTAATTCAGCAC 58.179 34.615 26.02 15.05 39.23 4.40
2748 2812 8.585471 ATGAGGAAAGAAGAATTAATTCAGCA 57.415 30.769 26.02 12.21 39.23 4.41
2749 2813 9.513727 GAATGAGGAAAGAAGAATTAATTCAGC 57.486 33.333 26.02 17.88 39.23 4.26
2756 2820 9.300681 ACAACATGAATGAGGAAAGAAGAATTA 57.699 29.630 0.00 0.00 0.00 1.40
2757 2821 8.186709 ACAACATGAATGAGGAAAGAAGAATT 57.813 30.769 0.00 0.00 0.00 2.17
2758 2822 7.771927 ACAACATGAATGAGGAAAGAAGAAT 57.228 32.000 0.00 0.00 0.00 2.40
2759 2823 7.587037 AACAACATGAATGAGGAAAGAAGAA 57.413 32.000 0.00 0.00 0.00 2.52
2760 2824 7.587037 AAACAACATGAATGAGGAAAGAAGA 57.413 32.000 0.00 0.00 0.00 2.87
2761 2825 8.352201 TGTAAACAACATGAATGAGGAAAGAAG 58.648 33.333 0.00 0.00 31.43 2.85
2762 2826 8.134895 GTGTAAACAACATGAATGAGGAAAGAA 58.865 33.333 0.00 0.00 41.10 2.52
2763 2827 7.519809 CGTGTAAACAACATGAATGAGGAAAGA 60.520 37.037 0.00 0.00 46.40 2.52
2764 2828 6.578545 CGTGTAAACAACATGAATGAGGAAAG 59.421 38.462 0.00 0.00 46.40 2.62
2765 2829 6.434596 CGTGTAAACAACATGAATGAGGAAA 58.565 36.000 0.00 0.00 46.40 3.13
2766 2830 5.996219 CGTGTAAACAACATGAATGAGGAA 58.004 37.500 0.00 0.00 46.40 3.36
2767 2831 5.605564 CGTGTAAACAACATGAATGAGGA 57.394 39.130 0.00 0.00 46.40 3.71
2775 2839 4.702247 TTCTCGTCGTGTAAACAACATG 57.298 40.909 0.00 0.00 45.08 3.21
2776 2840 4.986034 TGATTCTCGTCGTGTAAACAACAT 59.014 37.500 0.00 0.00 41.10 2.71
2777 2841 4.361420 TGATTCTCGTCGTGTAAACAACA 58.639 39.130 0.00 0.00 35.06 3.33
2778 2842 4.959631 TGATTCTCGTCGTGTAAACAAC 57.040 40.909 0.00 0.00 0.00 3.32
2779 2843 4.084745 GCTTGATTCTCGTCGTGTAAACAA 60.085 41.667 0.00 0.00 0.00 2.83
2780 2844 3.427528 GCTTGATTCTCGTCGTGTAAACA 59.572 43.478 0.00 0.00 0.00 2.83
2781 2845 3.479866 CGCTTGATTCTCGTCGTGTAAAC 60.480 47.826 0.00 0.00 0.00 2.01
2782 2846 2.659757 CGCTTGATTCTCGTCGTGTAAA 59.340 45.455 0.00 0.00 0.00 2.01
2783 2847 2.095617 TCGCTTGATTCTCGTCGTGTAA 60.096 45.455 0.00 0.00 0.00 2.41
2784 2848 1.465777 TCGCTTGATTCTCGTCGTGTA 59.534 47.619 0.00 0.00 0.00 2.90
2785 2849 0.240145 TCGCTTGATTCTCGTCGTGT 59.760 50.000 0.00 0.00 0.00 4.49
2786 2850 1.550065 ATCGCTTGATTCTCGTCGTG 58.450 50.000 0.00 0.00 0.00 4.35
2787 2851 2.279582 AATCGCTTGATTCTCGTCGT 57.720 45.000 0.00 0.00 37.83 4.34
2795 2859 1.097547 CGGGCTGGAATCGCTTGATT 61.098 55.000 0.00 0.00 44.93 2.57
2796 2860 1.524621 CGGGCTGGAATCGCTTGAT 60.525 57.895 0.00 0.00 0.00 2.57
2797 2861 2.125147 CGGGCTGGAATCGCTTGA 60.125 61.111 0.00 0.00 0.00 3.02
2798 2862 3.880846 GCGGGCTGGAATCGCTTG 61.881 66.667 0.00 0.00 45.16 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.