Multiple sequence alignment - TraesCS6A01G409600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G409600 chr6A 100.000 5069 0 0 1 5069 613361541 613356473 0.000000e+00 9361.0
1 TraesCS6A01G409600 chr6B 83.983 2410 210 84 2091 4417 712272129 712269813 0.000000e+00 2150.0
2 TraesCS6A01G409600 chr6B 89.945 1084 51 25 623 1663 712273971 712272903 0.000000e+00 1345.0
3 TraesCS6A01G409600 chr6B 90.299 402 36 3 1692 2092 712272572 712272173 1.620000e-144 523.0
4 TraesCS6A01G409600 chr6B 91.692 325 25 2 1066 1390 677498273 677497951 2.780000e-122 449.0
5 TraesCS6A01G409600 chr6B 87.356 348 43 1 1746 2092 712313886 712313539 1.020000e-106 398.0
6 TraesCS6A01G409600 chr6B 80.556 396 59 14 4403 4785 712269862 712269472 6.420000e-74 289.0
7 TraesCS6A01G409600 chr6B 82.558 258 38 6 2091 2342 712313484 712313228 2.380000e-53 220.0
8 TraesCS6A01G409600 chr6B 90.909 99 8 1 1893 1991 712315385 712315288 1.150000e-26 132.0
9 TraesCS6A01G409600 chr6B 97.778 45 1 0 25 69 22912046 22912090 1.510000e-10 78.7
10 TraesCS6A01G409600 chr6B 87.324 71 2 2 5004 5067 712269085 712269015 1.960000e-09 75.0
11 TraesCS6A01G409600 chr6D 95.623 1051 39 7 3174 4220 467094154 467093107 0.000000e+00 1679.0
12 TraesCS6A01G409600 chr6D 83.937 1712 154 62 8 1667 467097945 467096303 0.000000e+00 1526.0
13 TraesCS6A01G409600 chr6D 78.481 1106 137 45 2091 3156 467095518 467094474 9.260000e-177 630.0
14 TraesCS6A01G409600 chr6D 91.272 401 33 2 1692 2092 467095962 467095564 3.450000e-151 545.0
15 TraesCS6A01G409600 chr6D 85.010 507 60 10 4403 4898 467092986 467092485 7.580000e-138 501.0
16 TraesCS6A01G409600 chr6D 94.083 169 8 2 4236 4404 467093122 467092956 6.510000e-64 255.0
17 TraesCS6A01G409600 chr6D 75.620 242 55 3 346 585 464021598 464021359 3.210000e-22 117.0
18 TraesCS6A01G409600 chr6D 100.000 46 0 0 5022 5067 467092358 467092313 9.040000e-13 86.1
19 TraesCS6A01G409600 chr5D 96.085 281 5 1 1094 1368 41010920 41010640 2.150000e-123 453.0
20 TraesCS6A01G409600 chr5D 89.247 93 8 2 1962 2053 8029768 8029677 1.150000e-21 115.0
21 TraesCS6A01G409600 chr5D 95.652 46 0 2 25 69 12229669 12229625 7.040000e-09 73.1
22 TraesCS6A01G409600 chr5D 80.952 84 12 4 487 568 388058395 388058476 4.240000e-06 63.9
23 TraesCS6A01G409600 chr5B 92.079 303 24 0 1066 1368 606641215 606640913 1.300000e-115 427.0
24 TraesCS6A01G409600 chr7A 94.161 274 10 1 1101 1368 592018493 592018766 3.650000e-111 412.0
25 TraesCS6A01G409600 chr7A 90.476 63 5 1 22 83 146754227 146754165 1.170000e-11 82.4
26 TraesCS6A01G409600 chr4B 91.391 302 25 1 1067 1368 549622236 549621936 3.650000e-111 412.0
27 TraesCS6A01G409600 chr7B 93.040 273 14 2 1101 1368 493210480 493210752 1.320000e-105 394.0
28 TraesCS6A01G409600 chr7B 76.995 213 47 2 359 569 626600985 626600773 2.480000e-23 121.0
29 TraesCS6A01G409600 chrUn 80.519 385 47 19 1700 2078 224651734 224651372 2.330000e-68 270.0
30 TraesCS6A01G409600 chrUn 78.641 206 38 5 416 615 62916521 62916316 1.150000e-26 132.0
31 TraesCS6A01G409600 chr2B 91.558 154 7 1 1221 1368 727306660 727306813 1.850000e-49 207.0
32 TraesCS6A01G409600 chr2B 77.727 220 46 3 397 614 500655653 500655871 1.150000e-26 132.0
33 TraesCS6A01G409600 chr2B 92.982 57 3 1 22 77 10694789 10694733 1.170000e-11 82.4
34 TraesCS6A01G409600 chr1B 82.447 188 30 3 2306 2493 44907023 44906839 1.460000e-35 161.0
35 TraesCS6A01G409600 chr1B 84.444 135 17 4 2242 2374 44810600 44810468 4.120000e-26 130.0
36 TraesCS6A01G409600 chr5A 94.805 77 4 0 1066 1142 515721985 515721909 2.480000e-23 121.0
37 TraesCS6A01G409600 chr4D 84.906 106 14 2 510 614 43355490 43355386 6.940000e-19 106.0
38 TraesCS6A01G409600 chr3B 82.474 97 16 1 514 610 631494022 631494117 3.250000e-12 84.2
39 TraesCS6A01G409600 chr2D 91.525 59 5 0 25 83 443745236 443745294 1.170000e-11 82.4
40 TraesCS6A01G409600 chr2A 87.931 58 6 1 396 453 113375428 113375484 3.280000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G409600 chr6A 613356473 613361541 5068 True 9361.000000 9361 100.000000 1 5069 1 chr6A.!!$R1 5068
1 TraesCS6A01G409600 chr6B 712269015 712273971 4956 True 876.400000 2150 86.421400 623 5067 5 chr6B.!!$R2 4444
2 TraesCS6A01G409600 chr6B 712313228 712315385 2157 True 250.000000 398 86.941000 1746 2342 3 chr6B.!!$R3 596
3 TraesCS6A01G409600 chr6D 467092313 467097945 5632 True 746.014286 1679 89.772286 8 5067 7 chr6D.!!$R2 5059

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
504 517 0.035458 CCTCCCACTGGCCGAATATC 59.965 60.0 0.0 0.0 0.00 1.63 F
1417 1495 0.662619 TTCAGTCAGTTTTGCCTGCG 59.337 50.0 0.0 0.0 30.52 5.18 F
2857 3359 0.036010 GGTGTGCCTGTGTAGCTCAT 60.036 55.0 0.0 0.0 36.28 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1697 2100 0.106819 ATGCTCTTCAGGCCATCACC 60.107 55.0 5.01 0.0 0.00 4.02 R
2867 3369 0.244994 CACTAGCAGTTGCCTCGACT 59.755 55.0 0.00 0.0 43.38 4.18 R
4146 4987 0.038166 ACCGCTGGACACAATGGATT 59.962 50.0 1.50 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 3.426159 CGGTGATGCAGTAAAATGTGGTC 60.426 47.826 0.00 0.00 0.00 4.02
67 68 5.097529 GTGATGCAGTAAAATGTGGTCATG 58.902 41.667 0.00 0.00 34.19 3.07
73 74 5.336690 GCAGTAAAATGTGGTCATGGTCATT 60.337 40.000 0.00 0.00 34.19 2.57
77 78 8.865090 AGTAAAATGTGGTCATGGTCATTAAAA 58.135 29.630 0.00 0.00 34.19 1.52
109 110 3.817148 AAAAGTATTACAACGCACGGG 57.183 42.857 0.00 0.00 0.00 5.28
111 112 0.741927 AGTATTACAACGCACGGGCC 60.742 55.000 2.82 0.00 36.38 5.80
120 121 2.753849 GCACGGGCCCATTTGCTA 60.754 61.111 25.92 0.00 32.00 3.49
128 129 2.159099 GGGCCCATTTGCTAGTTAAAGC 60.159 50.000 19.95 0.00 43.08 3.51
133 134 6.264518 GGCCCATTTGCTAGTTAAAGCTAATA 59.735 38.462 8.02 0.00 43.13 0.98
178 180 2.029649 CCGGAGAAACGAAGACCTTACA 60.030 50.000 0.00 0.00 35.47 2.41
195 197 4.202326 CCTTACATCTAACCCGGCTATTGT 60.202 45.833 0.00 0.00 0.00 2.71
236 245 6.803154 AGAGAGGAAAATAAAGAACAACCG 57.197 37.500 0.00 0.00 0.00 4.44
244 253 4.637483 ATAAAGAACAACCGCCATCATG 57.363 40.909 0.00 0.00 0.00 3.07
248 257 1.750778 GAACAACCGCCATCATGGATT 59.249 47.619 8.30 0.00 40.96 3.01
273 282 9.861138 TTGAAGAATTTGTTTTGCATATTTTCG 57.139 25.926 0.00 0.00 30.68 3.46
284 295 6.676237 TTGCATATTTTCGCAGACTGATAA 57.324 33.333 6.65 0.00 39.75 1.75
287 298 6.482973 TGCATATTTTCGCAGACTGATAATGA 59.517 34.615 6.65 0.00 34.32 2.57
288 299 7.014115 GCATATTTTCGCAGACTGATAATGAG 58.986 38.462 6.65 0.00 34.32 2.90
298 309 5.118817 CAGACTGATAATGAGTGATGCATCG 59.881 44.000 21.34 5.35 0.00 3.84
346 357 7.909777 TCGAAAATCGAAGTGACTCATATAC 57.090 36.000 0.00 0.00 46.90 1.47
348 359 8.135529 TCGAAAATCGAAGTGACTCATATACAT 58.864 33.333 0.00 0.00 46.90 2.29
349 360 9.394477 CGAAAATCGAAGTGACTCATATACATA 57.606 33.333 0.00 0.00 43.74 2.29
353 364 9.631452 AATCGAAGTGACTCATATACATACATG 57.369 33.333 0.00 0.00 0.00 3.21
354 365 8.391075 TCGAAGTGACTCATATACATACATGA 57.609 34.615 0.00 0.00 0.00 3.07
356 367 8.906693 CGAAGTGACTCATATACATACATGAAC 58.093 37.037 0.00 0.00 31.04 3.18
357 368 8.803201 AAGTGACTCATATACATACATGAACG 57.197 34.615 0.00 0.00 31.04 3.95
358 369 7.941919 AGTGACTCATATACATACATGAACGT 58.058 34.615 0.00 0.00 31.04 3.99
361 372 8.842280 TGACTCATATACATACATGAACGTACA 58.158 33.333 0.00 0.00 31.04 2.90
363 374 8.847196 ACTCATATACATACATGAACGTACACT 58.153 33.333 0.00 0.00 31.04 3.55
369 380 3.299340 ACATGAACGTACACTCACCTC 57.701 47.619 0.00 0.00 0.00 3.85
373 384 4.696899 TGAACGTACACTCACCTCTATG 57.303 45.455 0.00 0.00 0.00 2.23
376 387 4.698583 ACGTACACTCACCTCTATGAAC 57.301 45.455 0.00 0.00 0.00 3.18
378 389 3.126514 CGTACACTCACCTCTATGAACGT 59.873 47.826 0.00 0.00 28.96 3.99
380 391 5.007430 CGTACACTCACCTCTATGAACGTAT 59.993 44.000 0.00 0.00 28.96 3.06
384 395 4.342378 ACTCACCTCTATGAACGTATGCAT 59.658 41.667 3.79 3.79 0.00 3.96
386 397 6.209589 ACTCACCTCTATGAACGTATGCATAT 59.790 38.462 10.16 0.00 0.00 1.78
388 399 8.293699 TCACCTCTATGAACGTATGCATATAT 57.706 34.615 10.16 0.00 0.00 0.86
390 401 9.452065 CACCTCTATGAACGTATGCATATATAC 57.548 37.037 10.16 0.00 0.00 1.47
394 405 8.630037 TCTATGAACGTATGCATATATACCCTG 58.370 37.037 10.16 0.00 31.33 4.45
396 407 6.627243 TGAACGTATGCATATATACCCTGTC 58.373 40.000 10.16 0.00 31.33 3.51
410 421 2.703007 ACCCTGTCCTTATGAGCATCTC 59.297 50.000 0.00 0.00 34.92 2.75
412 423 4.155709 CCCTGTCCTTATGAGCATCTCTA 58.844 47.826 0.00 0.00 34.92 2.43
413 424 4.590647 CCCTGTCCTTATGAGCATCTCTAA 59.409 45.833 0.00 0.00 34.92 2.10
414 425 5.070981 CCCTGTCCTTATGAGCATCTCTAAA 59.929 44.000 0.00 0.00 34.92 1.85
431 442 2.489938 AAAAGACTGAGCCGGCATAA 57.510 45.000 31.54 12.67 0.00 1.90
432 443 2.717639 AAAGACTGAGCCGGCATAAT 57.282 45.000 31.54 11.59 0.00 1.28
435 446 4.357918 AAGACTGAGCCGGCATAATATT 57.642 40.909 31.54 13.61 0.00 1.28
439 450 3.569701 ACTGAGCCGGCATAATATTTTGG 59.430 43.478 31.54 4.68 0.00 3.28
440 451 2.890311 TGAGCCGGCATAATATTTTGGG 59.110 45.455 31.54 3.25 0.00 4.12
442 453 3.763897 GAGCCGGCATAATATTTTGGGAT 59.236 43.478 31.54 0.06 0.00 3.85
443 454 4.159557 AGCCGGCATAATATTTTGGGATT 58.840 39.130 31.54 0.00 0.00 3.01
448 459 7.437748 CCGGCATAATATTTTGGGATTTTACA 58.562 34.615 7.83 0.00 0.00 2.41
459 470 5.975693 TGGGATTTTACAAAGTCATCACC 57.024 39.130 0.52 0.00 0.00 4.02
461 472 4.142469 GGGATTTTACAAAGTCATCACCGG 60.142 45.833 0.00 0.00 0.00 5.28
469 480 3.645660 TCATCACCGGGGCTTGCA 61.646 61.111 6.32 0.00 0.00 4.08
470 481 3.136123 CATCACCGGGGCTTGCAG 61.136 66.667 6.32 0.00 0.00 4.41
471 482 3.650950 ATCACCGGGGCTTGCAGT 61.651 61.111 6.32 0.00 0.00 4.40
479 490 2.357034 GGCTTGCAGTCGACGGAA 60.357 61.111 20.25 15.45 0.00 4.30
480 491 1.741770 GGCTTGCAGTCGACGGAAT 60.742 57.895 20.25 0.00 0.00 3.01
481 492 1.421485 GCTTGCAGTCGACGGAATG 59.579 57.895 20.25 12.27 41.06 2.67
495 508 0.394899 GGAATGCTTCCTCCCACTGG 60.395 60.000 7.46 0.00 46.57 4.00
498 511 4.785453 GCTTCCTCCCACTGGCCG 62.785 72.222 0.00 0.00 0.00 6.13
504 517 0.035458 CCTCCCACTGGCCGAATATC 59.965 60.000 0.00 0.00 0.00 1.63
505 518 0.758734 CTCCCACTGGCCGAATATCA 59.241 55.000 0.00 0.00 0.00 2.15
506 519 1.349026 CTCCCACTGGCCGAATATCAT 59.651 52.381 0.00 0.00 0.00 2.45
561 579 5.171339 AGCACCAATGTCAAGTCTAAGAT 57.829 39.130 0.00 0.00 0.00 2.40
569 587 8.244113 CCAATGTCAAGTCTAAGATTTAAACCC 58.756 37.037 0.00 0.00 0.00 4.11
576 594 7.086685 AGTCTAAGATTTAAACCCTGGTTGA 57.913 36.000 1.58 0.00 38.47 3.18
580 598 4.407365 AGATTTAAACCCTGGTTGACTGG 58.593 43.478 1.58 0.00 38.47 4.00
588 606 3.449746 CCTGGTTGACTGGGGATTTTA 57.550 47.619 0.00 0.00 34.73 1.52
605 623 7.014326 GGGGATTTTATTGTCCTTCTAACCATC 59.986 40.741 0.00 0.00 34.84 3.51
608 626 9.136323 GATTTTATTGTCCTTCTAACCATCCAT 57.864 33.333 0.00 0.00 0.00 3.41
609 627 8.519799 TTTTATTGTCCTTCTAACCATCCATC 57.480 34.615 0.00 0.00 0.00 3.51
610 628 4.503714 TTGTCCTTCTAACCATCCATCC 57.496 45.455 0.00 0.00 0.00 3.51
612 630 3.199946 TGTCCTTCTAACCATCCATCCAC 59.800 47.826 0.00 0.00 0.00 4.02
613 631 3.199946 GTCCTTCTAACCATCCATCCACA 59.800 47.826 0.00 0.00 0.00 4.17
614 632 4.047166 TCCTTCTAACCATCCATCCACAT 58.953 43.478 0.00 0.00 0.00 3.21
616 634 5.851693 TCCTTCTAACCATCCATCCACATAT 59.148 40.000 0.00 0.00 0.00 1.78
617 635 5.942236 CCTTCTAACCATCCATCCACATATG 59.058 44.000 0.00 0.00 0.00 1.78
619 637 3.889859 AACCATCCATCCACATATGCT 57.110 42.857 1.58 0.00 0.00 3.79
637 661 4.503741 TGCTTTCAGTTGTATCCAAAGC 57.496 40.909 7.58 7.58 46.03 3.51
660 684 7.838771 GCCTTTGCTCAGAAATTAAATTGAT 57.161 32.000 0.00 0.00 33.53 2.57
661 685 7.903062 GCCTTTGCTCAGAAATTAAATTGATC 58.097 34.615 0.00 0.00 33.53 2.92
662 686 7.546667 GCCTTTGCTCAGAAATTAAATTGATCA 59.453 33.333 0.00 0.00 33.53 2.92
663 687 9.084164 CCTTTGCTCAGAAATTAAATTGATCAG 57.916 33.333 0.00 0.00 0.00 2.90
664 688 9.850628 CTTTGCTCAGAAATTAAATTGATCAGA 57.149 29.630 0.00 0.00 0.00 3.27
792 841 1.559965 TTGGATGCTCTGCTCTGCCT 61.560 55.000 0.00 0.00 0.00 4.75
822 872 1.690985 CCAACTCTCCTCCCCTCCC 60.691 68.421 0.00 0.00 0.00 4.30
823 873 1.690985 CAACTCTCCTCCCCTCCCC 60.691 68.421 0.00 0.00 0.00 4.81
824 874 1.869452 AACTCTCCTCCCCTCCCCT 60.869 63.158 0.00 0.00 0.00 4.79
825 875 1.892441 AACTCTCCTCCCCTCCCCTC 61.892 65.000 0.00 0.00 0.00 4.30
827 877 4.179599 CTCCTCCCCTCCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
911 961 1.758514 CTCCTCTGCTCGGGCCTAA 60.759 63.158 3.94 0.00 37.74 2.69
930 980 1.760405 AGGGACTGGGATTGGAAACT 58.240 50.000 0.00 0.00 37.18 2.66
1378 1443 1.307084 AAGCAGGTCCCTAGTCCCC 60.307 63.158 0.00 0.00 0.00 4.81
1379 1444 3.155167 GCAGGTCCCTAGTCCCCG 61.155 72.222 0.00 0.00 0.00 5.73
1417 1495 0.662619 TTCAGTCAGTTTTGCCTGCG 59.337 50.000 0.00 0.00 30.52 5.18
1428 1506 4.503314 GCCTGCGCTTTCATGCCC 62.503 66.667 9.73 0.00 0.00 5.36
1441 1520 1.003580 TCATGCCCCTGAACTCTGAAC 59.996 52.381 0.00 0.00 0.00 3.18
1489 1570 4.517285 TGAGACCAAATCTTATGGACAGC 58.483 43.478 0.00 0.00 40.56 4.40
1496 1577 2.042686 TCTTATGGACAGCACATGCC 57.957 50.000 0.00 0.00 43.38 4.40
1522 1609 4.820173 ACATCATCACATCCACTGCTTATG 59.180 41.667 0.00 0.00 0.00 1.90
1539 1626 6.953101 TGCTTATGTAACACCTGAATCCTTA 58.047 36.000 0.00 0.00 0.00 2.69
1557 1644 5.057149 TCCTTAGTTTCACTGCTTGAAGTC 58.943 41.667 0.00 1.52 45.22 3.01
1570 1657 5.938322 TGCTTGAAGTCAACCGATAATTTC 58.062 37.500 0.00 0.00 0.00 2.17
1584 1671 4.950278 CGATAATTTCGTCGAAAACAGAGC 59.050 41.667 23.11 10.94 43.01 4.09
1631 1718 4.869297 CAGCTTCTTGTTGATCTACTCAGG 59.131 45.833 8.74 0.00 34.68 3.86
1663 1750 8.159344 AGCTGTAAAATATAGGATGAAAGTGC 57.841 34.615 0.00 0.00 0.00 4.40
1667 1754 9.905713 TGTAAAATATAGGATGAAAGTGCTCTT 57.094 29.630 0.00 0.00 35.14 2.85
1669 1756 8.457238 AAAATATAGGATGAAAGTGCTCTTCC 57.543 34.615 0.74 0.00 39.07 3.46
1671 1758 3.347077 AGGATGAAAGTGCTCTTCCTG 57.653 47.619 6.05 0.00 44.35 3.86
1673 1760 2.617532 GGATGAAAGTGCTCTTCCTGCT 60.618 50.000 0.74 0.00 36.93 4.24
1674 1761 1.888215 TGAAAGTGCTCTTCCTGCTG 58.112 50.000 0.74 0.00 32.90 4.41
1676 1763 2.158769 TGAAAGTGCTCTTCCTGCTGAA 60.159 45.455 0.74 0.00 32.90 3.02
1678 1765 2.875094 AGTGCTCTTCCTGCTGAATT 57.125 45.000 0.00 0.00 31.06 2.17
1679 1766 3.988976 AGTGCTCTTCCTGCTGAATTA 57.011 42.857 0.00 0.00 31.06 1.40
1681 1768 3.262915 AGTGCTCTTCCTGCTGAATTAGT 59.737 43.478 0.00 0.00 31.06 2.24
1682 1769 4.006319 GTGCTCTTCCTGCTGAATTAGTT 58.994 43.478 0.00 0.00 31.06 2.24
1683 1770 4.005650 TGCTCTTCCTGCTGAATTAGTTG 58.994 43.478 0.00 0.00 31.06 3.16
1684 1771 3.181502 GCTCTTCCTGCTGAATTAGTTGC 60.182 47.826 0.00 0.00 31.06 4.17
1685 1772 4.260170 CTCTTCCTGCTGAATTAGTTGCT 58.740 43.478 0.00 0.00 31.06 3.91
1689 1776 5.165961 TCCTGCTGAATTAGTTGCTTACT 57.834 39.130 0.00 0.00 41.04 2.24
1697 2100 8.268738 GCTGAATTAGTTGCTTACTTTGTTTTG 58.731 33.333 0.00 0.00 38.33 2.44
1703 2106 6.042143 AGTTGCTTACTTTGTTTTGGTGATG 58.958 36.000 0.00 0.00 31.29 3.07
1712 2115 2.238521 GTTTTGGTGATGGCCTGAAGA 58.761 47.619 3.32 0.00 0.00 2.87
1719 2122 0.822532 GATGGCCTGAAGAGCATGGG 60.823 60.000 3.32 0.00 0.00 4.00
1757 2161 2.751166 TCCTGCTGACTTAGTTGCTC 57.249 50.000 11.22 0.00 0.00 4.26
1764 2168 3.608008 GCTGACTTAGTTGCTCACTTTGC 60.608 47.826 4.54 0.00 36.88 3.68
1786 2190 7.265647 TGCTTAACATAGTTGTGTTTGCTTA 57.734 32.000 14.79 1.40 42.08 3.09
1789 2193 7.534239 GCTTAACATAGTTGTGTTTGCTTAGAC 59.466 37.037 0.00 0.00 42.08 2.59
1884 2288 5.012239 TCATGAAGAATGAGAACAAAGGGG 58.988 41.667 0.00 0.00 40.50 4.79
1889 2293 2.770164 ATGAGAACAAAGGGGAGACG 57.230 50.000 0.00 0.00 0.00 4.18
1890 2294 0.685097 TGAGAACAAAGGGGAGACGG 59.315 55.000 0.00 0.00 0.00 4.79
2029 2433 2.180017 GCATTGCTCAACTGGCCG 59.820 61.111 0.16 0.00 0.00 6.13
2071 2476 8.125448 TCAAAGGTTTGTTTTTGTTTGTTCTTG 58.875 29.630 2.49 0.00 39.18 3.02
2073 2478 7.561021 AGGTTTGTTTTTGTTTGTTCTTGTT 57.439 28.000 0.00 0.00 0.00 2.83
2083 2488 7.624360 TTGTTTGTTCTTGTTAGATGTCAGT 57.376 32.000 0.00 0.00 0.00 3.41
2112 2573 2.666022 GGTTTTTATCATTGCACACGGC 59.334 45.455 0.00 0.00 45.13 5.68
2113 2574 3.574614 GTTTTTATCATTGCACACGGCT 58.425 40.909 0.00 0.00 45.15 5.52
2118 2579 2.917701 TCATTGCACACGGCTATTTG 57.082 45.000 0.00 0.00 45.15 2.32
2119 2580 2.431454 TCATTGCACACGGCTATTTGA 58.569 42.857 0.00 0.00 45.15 2.69
2123 2584 1.804151 TGCACACGGCTATTTGAGTTC 59.196 47.619 0.00 0.00 45.15 3.01
2124 2585 1.130561 GCACACGGCTATTTGAGTTCC 59.869 52.381 0.00 0.00 40.25 3.62
2125 2586 2.422597 CACACGGCTATTTGAGTTCCA 58.577 47.619 0.00 0.00 0.00 3.53
2126 2587 2.159627 CACACGGCTATTTGAGTTCCAC 59.840 50.000 0.00 0.00 0.00 4.02
2127 2588 2.038557 ACACGGCTATTTGAGTTCCACT 59.961 45.455 0.00 0.00 0.00 4.00
2128 2589 3.259876 ACACGGCTATTTGAGTTCCACTA 59.740 43.478 0.00 0.00 0.00 2.74
2129 2590 3.865745 CACGGCTATTTGAGTTCCACTAG 59.134 47.826 0.00 0.00 0.00 2.57
2131 2592 4.406003 ACGGCTATTTGAGTTCCACTAGAT 59.594 41.667 0.00 0.00 0.00 1.98
2132 2593 4.985409 CGGCTATTTGAGTTCCACTAGATC 59.015 45.833 0.00 0.00 0.00 2.75
2133 2594 5.451937 CGGCTATTTGAGTTCCACTAGATCA 60.452 44.000 0.00 0.00 0.00 2.92
2136 2597 7.500559 GGCTATTTGAGTTCCACTAGATCATTT 59.499 37.037 0.00 0.00 0.00 2.32
2139 2600 7.452880 TTTGAGTTCCACTAGATCATTTTGG 57.547 36.000 0.00 0.00 0.00 3.28
2141 2605 6.173339 TGAGTTCCACTAGATCATTTTGGTC 58.827 40.000 0.00 0.00 0.00 4.02
2144 2608 5.160607 TCCACTAGATCATTTTGGTCGTT 57.839 39.130 0.00 0.00 31.44 3.85
2146 2610 4.032900 CCACTAGATCATTTTGGTCGTTCG 59.967 45.833 0.00 0.00 31.44 3.95
2152 2616 6.772078 AGATCATTTTGGTCGTTCGAATAAC 58.228 36.000 0.00 2.56 31.44 1.89
2158 2622 2.296752 TGGTCGTTCGAATAACCACTGA 59.703 45.455 23.26 7.67 36.88 3.41
2159 2623 2.921754 GGTCGTTCGAATAACCACTGAG 59.078 50.000 20.84 0.00 0.00 3.35
2178 2643 7.187480 CACTGAGACTGATGCATCTTTTATTG 58.813 38.462 26.32 14.19 0.00 1.90
2212 2677 6.919775 AACTGATGGGTACTAGTATGGATC 57.080 41.667 5.75 8.15 0.00 3.36
2350 2819 1.331214 CCTGCAAAAGACCACCACAT 58.669 50.000 0.00 0.00 0.00 3.21
2351 2820 1.000060 CCTGCAAAAGACCACCACATG 60.000 52.381 0.00 0.00 0.00 3.21
2356 2825 1.593196 AAAGACCACCACATGACACG 58.407 50.000 0.00 0.00 0.00 4.49
2361 2830 0.787787 CCACCACATGACACGTTACG 59.212 55.000 2.19 2.19 0.00 3.18
2362 2831 1.603425 CCACCACATGACACGTTACGA 60.603 52.381 13.03 0.00 0.00 3.43
2363 2832 1.454276 CACCACATGACACGTTACGAC 59.546 52.381 13.03 3.17 0.00 4.34
2364 2833 1.065358 CCACATGACACGTTACGACC 58.935 55.000 13.03 0.22 0.00 4.79
2365 2834 1.603425 CCACATGACACGTTACGACCA 60.603 52.381 13.03 6.36 0.00 4.02
2366 2835 2.128821 CACATGACACGTTACGACCAA 58.871 47.619 13.03 0.00 0.00 3.67
2367 2836 2.540516 CACATGACACGTTACGACCAAA 59.459 45.455 13.03 0.00 0.00 3.28
2368 2837 2.540931 ACATGACACGTTACGACCAAAC 59.459 45.455 13.03 0.00 0.00 2.93
2369 2838 2.582728 TGACACGTTACGACCAAACT 57.417 45.000 13.03 0.00 0.00 2.66
2370 2839 2.195096 TGACACGTTACGACCAAACTG 58.805 47.619 13.03 0.00 0.00 3.16
2371 2840 2.195922 GACACGTTACGACCAAACTGT 58.804 47.619 13.03 2.86 0.00 3.55
2372 2841 2.195922 ACACGTTACGACCAAACTGTC 58.804 47.619 13.03 0.00 0.00 3.51
2373 2842 2.195096 CACGTTACGACCAAACTGTCA 58.805 47.619 13.03 0.00 34.88 3.58
2374 2843 2.034339 CACGTTACGACCAAACTGTCAC 60.034 50.000 13.03 0.00 34.88 3.67
2375 2844 2.195096 CGTTACGACCAAACTGTCACA 58.805 47.619 0.00 0.00 34.88 3.58
2376 2845 2.217847 CGTTACGACCAAACTGTCACAG 59.782 50.000 2.22 2.22 34.88 3.66
2377 2846 1.860676 TACGACCAAACTGTCACAGC 58.139 50.000 4.13 0.00 34.37 4.40
2378 2847 0.814010 ACGACCAAACTGTCACAGCC 60.814 55.000 4.13 0.00 34.37 4.85
2379 2848 1.507141 CGACCAAACTGTCACAGCCC 61.507 60.000 4.13 0.00 34.37 5.19
2380 2849 1.507141 GACCAAACTGTCACAGCCCG 61.507 60.000 4.13 0.00 34.37 6.13
2381 2850 1.525995 CCAAACTGTCACAGCCCGT 60.526 57.895 4.13 0.00 34.37 5.28
2383 2852 2.186826 AAACTGTCACAGCCCGTGC 61.187 57.895 4.13 0.00 45.92 5.34
2384 2853 4.626081 ACTGTCACAGCCCGTGCC 62.626 66.667 4.13 0.00 45.92 5.01
2387 2856 3.702048 GTCACAGCCCGTGCCCTA 61.702 66.667 0.00 0.00 45.92 3.53
2403 2872 2.816337 GCCCTACCCTGTTTACTTTGCA 60.816 50.000 0.00 0.00 0.00 4.08
2407 2876 4.082245 CCTACCCTGTTTACTTTGCAATGG 60.082 45.833 15.92 7.68 0.00 3.16
2426 2896 3.857549 GGATTTTCTCCACCTTGAAGC 57.142 47.619 0.00 0.00 44.26 3.86
2430 2900 1.338107 TTCTCCACCTTGAAGCGAGA 58.662 50.000 0.00 2.09 0.00 4.04
2431 2901 1.561643 TCTCCACCTTGAAGCGAGAT 58.438 50.000 0.00 0.00 0.00 2.75
2433 2903 3.300388 TCTCCACCTTGAAGCGAGATAT 58.700 45.455 0.00 0.00 0.00 1.63
2434 2904 3.706594 TCTCCACCTTGAAGCGAGATATT 59.293 43.478 0.00 0.00 0.00 1.28
2443 2913 3.070159 TGAAGCGAGATATTTCCTGGAGG 59.930 47.826 0.00 0.00 0.00 4.30
2481 2951 4.471904 TCGACTAATGGTTCTGATTGCT 57.528 40.909 0.00 0.00 0.00 3.91
2517 2987 2.057137 TGCACTTCAAGGCTTCAACT 57.943 45.000 0.00 0.00 0.00 3.16
2529 2999 2.675348 GGCTTCAACTACTAAGCTGCAG 59.325 50.000 10.11 10.11 45.87 4.41
2545 3015 0.681733 GCAGTCACTCTCCAAGACCA 59.318 55.000 0.00 0.00 32.82 4.02
2549 3019 1.689273 GTCACTCTCCAAGACCACTGT 59.311 52.381 0.00 0.00 0.00 3.55
2575 3045 8.375608 GGCATTATATATCACTGCCTTATGAG 57.624 38.462 18.85 0.00 46.97 2.90
2578 3048 3.710209 ATATCACTGCCTTATGAGCCC 57.290 47.619 0.00 0.00 0.00 5.19
2579 3049 1.216064 ATCACTGCCTTATGAGCCCA 58.784 50.000 0.00 0.00 0.00 5.36
2583 3053 1.849039 ACTGCCTTATGAGCCCATTCT 59.151 47.619 0.00 0.00 34.31 2.40
2600 3070 4.205587 CATTCTAGGCATTCCAGAGCTTT 58.794 43.478 0.00 0.00 33.74 3.51
2613 3083 2.873288 GCTTTGGCTTCCTCTGCG 59.127 61.111 0.00 0.00 35.22 5.18
2618 3088 1.257750 TTGGCTTCCTCTGCGCTAGA 61.258 55.000 9.73 9.17 0.00 2.43
2640 3118 0.321653 AGAGTTTCCCATGCCACGAC 60.322 55.000 0.00 0.00 0.00 4.34
2644 3122 0.887247 TTTCCCATGCCACGACAATG 59.113 50.000 0.00 0.00 0.00 2.82
2649 3127 2.287769 CCATGCCACGACAATGACATA 58.712 47.619 0.00 0.00 0.00 2.29
2659 3137 5.066375 CACGACAATGACATACCCATTCATT 59.934 40.000 0.00 0.00 39.95 2.57
2685 3163 2.115910 CACCACACCCCATGCTGT 59.884 61.111 0.00 0.00 0.00 4.40
2688 3166 1.114722 ACCACACCCCATGCTGTTTG 61.115 55.000 0.00 0.00 0.00 2.93
2705 3183 4.446371 TGTTTGTTTTGTATTGCCAAGGG 58.554 39.130 0.00 0.00 0.00 3.95
2718 3196 0.890683 CCAAGGGAACTGGCATCAAC 59.109 55.000 0.00 0.00 42.68 3.18
2732 3210 4.523943 TGGCATCAACATTCAGTTTTAGCT 59.476 37.500 0.00 0.00 38.74 3.32
2737 3215 4.700213 TCAACATTCAGTTTTAGCTAGCCC 59.300 41.667 12.13 0.00 38.74 5.19
2740 3218 2.961526 TCAGTTTTAGCTAGCCCTCG 57.038 50.000 12.13 0.00 0.00 4.63
2747 3225 0.465824 TAGCTAGCCCTCGTCTGGAC 60.466 60.000 12.13 0.00 0.00 4.02
2762 3241 4.320870 GTCTGGACGTTTTCAGGGATTTA 58.679 43.478 12.37 0.00 0.00 1.40
2765 3244 6.007703 TCTGGACGTTTTCAGGGATTTAATT 58.992 36.000 12.37 0.00 0.00 1.40
2766 3245 6.019779 TGGACGTTTTCAGGGATTTAATTG 57.980 37.500 0.00 0.00 0.00 2.32
2784 3263 1.761449 TGTCAGCCAGAAGTTTGCAA 58.239 45.000 0.00 0.00 0.00 4.08
2792 3271 3.217626 CCAGAAGTTTGCAAGACTCCTT 58.782 45.455 12.60 6.09 0.00 3.36
2793 3272 3.251972 CCAGAAGTTTGCAAGACTCCTTC 59.748 47.826 12.60 12.74 0.00 3.46
2794 3273 4.133078 CAGAAGTTTGCAAGACTCCTTCT 58.867 43.478 15.58 15.58 39.24 2.85
2822 3324 4.342359 TGGTACTCAGTAGGTTCTTCTCC 58.658 47.826 0.00 0.00 0.00 3.71
2840 3342 5.171541 TCTCCCCTCCTTTATATCTTGGT 57.828 43.478 0.00 0.00 0.00 3.67
2842 3344 4.641868 TCCCCTCCTTTATATCTTGGTGT 58.358 43.478 0.00 0.00 0.00 4.16
2843 3345 4.412199 TCCCCTCCTTTATATCTTGGTGTG 59.588 45.833 0.00 0.00 0.00 3.82
2844 3346 4.137543 CCCTCCTTTATATCTTGGTGTGC 58.862 47.826 0.00 0.00 0.00 4.57
2845 3347 4.137543 CCTCCTTTATATCTTGGTGTGCC 58.862 47.826 0.00 0.00 0.00 5.01
2846 3348 4.141390 CCTCCTTTATATCTTGGTGTGCCT 60.141 45.833 0.00 0.00 35.27 4.75
2847 3349 4.780815 TCCTTTATATCTTGGTGTGCCTG 58.219 43.478 0.00 0.00 35.27 4.85
2848 3350 4.227300 TCCTTTATATCTTGGTGTGCCTGT 59.773 41.667 0.00 0.00 35.27 4.00
2849 3351 4.336433 CCTTTATATCTTGGTGTGCCTGTG 59.664 45.833 0.00 0.00 35.27 3.66
2850 3352 4.568072 TTATATCTTGGTGTGCCTGTGT 57.432 40.909 0.00 0.00 35.27 3.72
2851 3353 5.685520 TTATATCTTGGTGTGCCTGTGTA 57.314 39.130 0.00 0.00 35.27 2.90
2852 3354 2.479566 ATCTTGGTGTGCCTGTGTAG 57.520 50.000 0.00 0.00 35.27 2.74
2853 3355 0.250295 TCTTGGTGTGCCTGTGTAGC 60.250 55.000 0.00 0.00 35.27 3.58
2854 3356 0.250467 CTTGGTGTGCCTGTGTAGCT 60.250 55.000 0.00 0.00 35.27 3.32
2855 3357 0.250295 TTGGTGTGCCTGTGTAGCTC 60.250 55.000 0.00 0.00 35.27 4.09
2856 3358 1.371183 GGTGTGCCTGTGTAGCTCA 59.629 57.895 0.00 0.00 0.00 4.26
2857 3359 0.036010 GGTGTGCCTGTGTAGCTCAT 60.036 55.000 0.00 0.00 36.28 2.90
2858 3360 1.081892 GTGTGCCTGTGTAGCTCATG 58.918 55.000 0.00 0.00 36.28 3.07
2859 3361 0.975887 TGTGCCTGTGTAGCTCATGA 59.024 50.000 0.00 0.00 0.00 3.07
2860 3362 1.066645 TGTGCCTGTGTAGCTCATGAG 60.067 52.381 18.84 18.84 0.00 2.90
2861 3363 0.538584 TGCCTGTGTAGCTCATGAGG 59.461 55.000 23.89 6.92 33.94 3.86
2862 3364 0.826715 GCCTGTGTAGCTCATGAGGA 59.173 55.000 23.89 0.00 33.12 3.71
2863 3365 1.208052 GCCTGTGTAGCTCATGAGGAA 59.792 52.381 23.89 0.00 33.12 3.36
2864 3366 2.741228 GCCTGTGTAGCTCATGAGGAAG 60.741 54.545 23.89 0.00 33.12 3.46
2865 3367 2.499289 CCTGTGTAGCTCATGAGGAAGT 59.501 50.000 23.89 0.00 33.12 3.01
2866 3368 3.055530 CCTGTGTAGCTCATGAGGAAGTT 60.056 47.826 23.89 0.00 33.12 2.66
2867 3369 4.160439 CCTGTGTAGCTCATGAGGAAGTTA 59.840 45.833 23.89 0.00 33.12 2.24
2868 3370 5.330455 TGTGTAGCTCATGAGGAAGTTAG 57.670 43.478 23.89 0.00 0.00 2.34
2869 3371 4.772624 TGTGTAGCTCATGAGGAAGTTAGT 59.227 41.667 23.89 0.00 0.00 2.24
2870 3372 5.105716 TGTGTAGCTCATGAGGAAGTTAGTC 60.106 44.000 23.89 4.09 0.00 2.59
2871 3373 3.791973 AGCTCATGAGGAAGTTAGTCG 57.208 47.619 23.89 0.00 0.00 4.18
2872 3374 3.357203 AGCTCATGAGGAAGTTAGTCGA 58.643 45.455 23.89 0.00 0.00 4.20
2873 3375 3.380004 AGCTCATGAGGAAGTTAGTCGAG 59.620 47.826 23.89 0.00 0.00 4.04
2874 3376 3.490078 GCTCATGAGGAAGTTAGTCGAGG 60.490 52.174 23.89 0.00 0.00 4.63
2875 3377 2.427453 TCATGAGGAAGTTAGTCGAGGC 59.573 50.000 0.00 0.00 0.00 4.70
2876 3378 1.919240 TGAGGAAGTTAGTCGAGGCA 58.081 50.000 0.00 0.00 0.00 4.75
2877 3379 2.244695 TGAGGAAGTTAGTCGAGGCAA 58.755 47.619 0.00 0.00 0.00 4.52
2878 3380 2.029290 TGAGGAAGTTAGTCGAGGCAAC 60.029 50.000 0.00 0.00 0.00 4.17
2900 3402 1.871080 CTAGTGCATCCCCTTTAGCG 58.129 55.000 0.00 0.00 0.00 4.26
2903 3405 1.004277 AGTGCATCCCCTTTAGCGAAA 59.996 47.619 0.00 0.00 0.00 3.46
2914 3419 5.931724 CCCCTTTAGCGAAAAACATCATTTT 59.068 36.000 0.00 0.00 35.29 1.82
2920 3425 3.120580 GCGAAAAACATCATTTTGCAGGG 60.121 43.478 6.40 0.00 43.55 4.45
2940 3450 1.079405 CCAAGCATGCTGCCAAAGG 60.079 57.895 23.48 12.49 46.52 3.11
2947 3457 2.376109 CATGCTGCCAAAGGAAGAGAT 58.624 47.619 0.00 0.00 26.79 2.75
2948 3458 2.592102 TGCTGCCAAAGGAAGAGATT 57.408 45.000 0.00 0.00 26.79 2.40
2951 3461 2.163211 GCTGCCAAAGGAAGAGATTCAC 59.837 50.000 0.00 0.00 26.79 3.18
2953 3463 3.679389 TGCCAAAGGAAGAGATTCACTC 58.321 45.455 0.00 0.00 45.22 3.51
2968 3478 0.752658 CACTCGCATATCACCTGGGA 59.247 55.000 0.00 0.00 34.78 4.37
3012 3524 2.345876 CATTCATGGCGTGAGTACACA 58.654 47.619 9.70 0.00 46.20 3.72
3020 3532 0.242286 CGTGAGTACACAGCTGCTCT 59.758 55.000 15.27 6.94 46.20 4.09
3083 3595 1.814394 GTCATCACTGCATGGAAGCAA 59.186 47.619 0.00 0.00 45.13 3.91
3088 3600 1.884579 CACTGCATGGAAGCAACTCTT 59.115 47.619 0.00 0.00 45.13 2.85
3112 3640 8.856153 TTGTATAAGTTGGAAGCACATTTCTA 57.144 30.769 0.00 0.00 0.00 2.10
3113 3641 8.492673 TGTATAAGTTGGAAGCACATTTCTAG 57.507 34.615 0.00 0.00 0.00 2.43
3211 4042 4.899352 AAGGCTTCTATCACTCACAAGT 57.101 40.909 0.00 0.00 35.60 3.16
3235 4066 9.425577 AGTTGAGCACTAGAAGTAACTATTTTC 57.574 33.333 0.00 0.00 31.97 2.29
3429 4261 9.054922 CCTCAAAATAGCCAAAAAGAAAATTGA 57.945 29.630 0.00 0.00 0.00 2.57
3437 4269 8.735692 AGCCAAAAAGAAAATTGATTCTTGAA 57.264 26.923 6.00 0.00 46.25 2.69
3502 4334 2.009774 CTACGCCAATGGTTCTCAAGG 58.990 52.381 0.00 0.00 0.00 3.61
3608 4441 1.187087 GAGAGGTCGATGGTGGAACT 58.813 55.000 0.00 0.00 36.74 3.01
3652 4485 1.753649 AGCAGTGATCACGTATGCTCT 59.246 47.619 26.77 12.77 43.46 4.09
3655 4488 3.489229 GCAGTGATCACGTATGCTCTGTA 60.489 47.826 23.97 0.00 36.20 2.74
3663 4496 2.182825 CGTATGCTCTGTAACACGTCC 58.817 52.381 0.00 0.00 0.00 4.79
3720 4553 7.313646 GTCATAGAAGCACAGTAGTACTCAAA 58.686 38.462 0.00 0.00 0.00 2.69
3721 4554 7.976734 GTCATAGAAGCACAGTAGTACTCAAAT 59.023 37.037 0.00 0.00 0.00 2.32
3772 4608 2.160822 ATGCTCATAACTAGCGCTGG 57.839 50.000 22.90 21.51 43.11 4.85
3817 4655 5.929058 TTCTGTGACTTCATCTGAGCTAT 57.071 39.130 0.00 0.00 0.00 2.97
4083 4923 5.294356 GTCCTGTAACTGTTCACACATGTA 58.706 41.667 0.00 0.00 30.39 2.29
4103 4944 5.802064 TGTACATTCAAATAAATCGCGACC 58.198 37.500 12.93 0.00 0.00 4.79
4126 4967 2.617308 CAGATGCTCCTACCATTTGCAG 59.383 50.000 0.00 0.00 37.07 4.41
4146 4987 6.594744 TGCAGATGAAAATAAGGAGATGCTA 58.405 36.000 0.00 0.00 0.00 3.49
4220 5061 5.188751 TGTTTCTGAATTTGGGTGGAAACTT 59.811 36.000 14.45 0.00 41.39 2.66
4221 5062 5.529581 TTCTGAATTTGGGTGGAAACTTC 57.470 39.130 0.00 0.00 0.00 3.01
4222 5063 4.803452 TCTGAATTTGGGTGGAAACTTCT 58.197 39.130 0.00 0.00 0.00 2.85
4223 5064 5.208121 TCTGAATTTGGGTGGAAACTTCTT 58.792 37.500 0.00 0.00 0.00 2.52
4224 5065 5.660864 TCTGAATTTGGGTGGAAACTTCTTT 59.339 36.000 0.00 0.00 0.00 2.52
4225 5066 6.156083 TCTGAATTTGGGTGGAAACTTCTTTT 59.844 34.615 0.00 0.00 0.00 2.27
4226 5067 6.716284 TGAATTTGGGTGGAAACTTCTTTTT 58.284 32.000 0.00 0.00 0.00 1.94
4246 5087 5.683876 TTTTTGAGACAAATTTGGGTGGA 57.316 34.783 21.74 2.82 0.00 4.02
4247 5088 5.683876 TTTTGAGACAAATTTGGGTGGAA 57.316 34.783 21.74 8.43 0.00 3.53
4248 5089 5.683876 TTTGAGACAAATTTGGGTGGAAA 57.316 34.783 21.74 10.73 0.00 3.13
4249 5090 4.664150 TGAGACAAATTTGGGTGGAAAC 57.336 40.909 21.74 5.55 0.00 2.78
4250 5091 4.285863 TGAGACAAATTTGGGTGGAAACT 58.714 39.130 21.74 7.79 0.00 2.66
4314 5163 2.622011 TTTAGCTGGGCCGCAAACG 61.622 57.895 19.61 0.00 39.67 3.60
4330 5179 2.203209 CGGGCTTGTAGATGGGCC 60.203 66.667 0.00 0.00 43.42 5.80
4359 5208 0.458889 CCAACATGCCTGAATTGCCG 60.459 55.000 0.00 0.00 0.00 5.69
4381 5230 4.744631 CGCAAATTCAACCAGCTTAACTTT 59.255 37.500 0.00 0.00 0.00 2.66
4382 5231 5.918011 CGCAAATTCAACCAGCTTAACTTTA 59.082 36.000 0.00 0.00 0.00 1.85
4383 5232 6.586082 CGCAAATTCAACCAGCTTAACTTTAT 59.414 34.615 0.00 0.00 0.00 1.40
4384 5233 7.410728 CGCAAATTCAACCAGCTTAACTTTATG 60.411 37.037 0.00 0.00 0.00 1.90
4385 5234 7.148590 GCAAATTCAACCAGCTTAACTTTATGG 60.149 37.037 0.00 0.00 37.07 2.74
4386 5235 7.775053 AATTCAACCAGCTTAACTTTATGGA 57.225 32.000 0.00 0.00 34.99 3.41
4387 5236 6.569179 TTCAACCAGCTTAACTTTATGGAC 57.431 37.500 0.00 0.00 34.99 4.02
4388 5237 5.876357 TCAACCAGCTTAACTTTATGGACT 58.124 37.500 0.00 0.00 34.99 3.85
4389 5238 7.011499 TCAACCAGCTTAACTTTATGGACTA 57.989 36.000 0.00 0.00 34.99 2.59
4390 5239 7.630082 TCAACCAGCTTAACTTTATGGACTAT 58.370 34.615 0.00 0.00 34.99 2.12
4391 5240 8.107095 TCAACCAGCTTAACTTTATGGACTATT 58.893 33.333 0.00 0.00 34.99 1.73
4392 5241 7.865706 ACCAGCTTAACTTTATGGACTATTG 57.134 36.000 0.00 0.00 34.99 1.90
4393 5242 7.402862 ACCAGCTTAACTTTATGGACTATTGT 58.597 34.615 0.00 0.00 34.99 2.71
4394 5243 7.553044 ACCAGCTTAACTTTATGGACTATTGTC 59.447 37.037 0.00 0.00 42.22 3.18
4395 5244 7.770897 CCAGCTTAACTTTATGGACTATTGTCT 59.229 37.037 7.24 0.00 42.54 3.41
4396 5245 9.817809 CAGCTTAACTTTATGGACTATTGTCTA 57.182 33.333 7.24 1.35 42.54 2.59
4426 5275 9.569122 AAAGCTTAACTTATGGACTGTTTCTTA 57.431 29.630 0.00 0.00 37.75 2.10
4427 5276 9.740710 AAGCTTAACTTATGGACTGTTTCTTAT 57.259 29.630 0.00 0.00 36.62 1.73
4459 5308 8.585189 AAAAGTTTAACTTACTGGAGTACTCG 57.415 34.615 16.56 6.52 37.47 4.18
4463 5312 6.899393 TTAACTTACTGGAGTACTCGGAAA 57.101 37.500 16.56 7.44 0.00 3.13
4469 5318 4.282496 ACTGGAGTACTCGGAAATCAGAT 58.718 43.478 23.21 10.57 0.00 2.90
4472 5322 6.551601 ACTGGAGTACTCGGAAATCAGATAAT 59.448 38.462 23.21 5.88 0.00 1.28
4473 5323 6.749139 TGGAGTACTCGGAAATCAGATAATG 58.251 40.000 16.56 0.00 0.00 1.90
4478 5328 2.711009 TCGGAAATCAGATAATGCCCCT 59.289 45.455 0.00 0.00 0.00 4.79
4479 5329 3.907474 TCGGAAATCAGATAATGCCCCTA 59.093 43.478 0.00 0.00 0.00 3.53
4480 5330 4.536090 TCGGAAATCAGATAATGCCCCTAT 59.464 41.667 0.00 0.00 0.00 2.57
4481 5331 4.637534 CGGAAATCAGATAATGCCCCTATG 59.362 45.833 0.00 0.00 0.00 2.23
4482 5332 4.400567 GGAAATCAGATAATGCCCCTATGC 59.599 45.833 0.00 0.00 0.00 3.14
4483 5333 3.659183 ATCAGATAATGCCCCTATGCC 57.341 47.619 0.00 0.00 0.00 4.40
4484 5334 1.635487 TCAGATAATGCCCCTATGCCC 59.365 52.381 0.00 0.00 0.00 5.36
4516 5370 5.725551 ATTTAGACATCCCCATACACCAA 57.274 39.130 0.00 0.00 0.00 3.67
4535 5389 2.749076 CAAACATTTGGAGCCATCTCGA 59.251 45.455 0.00 0.00 40.26 4.04
4545 5399 2.728839 GAGCCATCTCGAAAGCTATTCG 59.271 50.000 18.78 18.78 42.74 3.34
4572 5432 2.028925 CTTGCAAAACCCCCACGC 59.971 61.111 0.00 0.00 0.00 5.34
4577 5437 2.840572 AAAACCCCCACGCCCAAC 60.841 61.111 0.00 0.00 0.00 3.77
4632 5499 4.736896 GGTCGCCGCCGAAGACTT 62.737 66.667 10.66 0.00 46.34 3.01
4633 5500 2.180017 GTCGCCGCCGAAGACTTA 59.820 61.111 0.00 0.00 46.34 2.24
4636 5503 1.026182 TCGCCGCCGAAGACTTAGTA 61.026 55.000 0.00 0.00 41.17 1.82
4669 5536 1.217882 ACTTTCTCTTCAACCGTGCG 58.782 50.000 0.00 0.00 0.00 5.34
4810 5695 1.172812 GGTGCGAGGTTTTTGCTCCT 61.173 55.000 0.00 0.00 43.58 3.69
4818 5703 4.659115 GAGGTTTTTGCTCCTAAAGGGTA 58.341 43.478 0.00 0.00 33.83 3.69
4834 5719 1.202891 GGGTAAGGCACAACTGTCCTT 60.203 52.381 14.13 14.13 38.33 3.36
4840 5725 1.604278 GGCACAACTGTCCTTCACTTC 59.396 52.381 0.00 0.00 0.00 3.01
4846 5731 1.891060 CTGTCCTTCACTTCACGCGC 61.891 60.000 5.73 0.00 0.00 6.86
4856 5741 1.413767 CTTCACGCGCGCTCTAATGT 61.414 55.000 32.58 15.70 0.00 2.71
4884 5798 0.454285 CACATTAAAGCCGTGTGCCG 60.454 55.000 0.00 0.00 42.71 5.69
4899 5813 2.032071 CCGAACCACACACCCTCC 59.968 66.667 0.00 0.00 0.00 4.30
4965 5987 5.760253 GGTTAGTATGGTCTTCATGGATGTG 59.240 44.000 0.00 0.00 37.30 3.21
4974 5996 6.119536 GGTCTTCATGGATGTGTATTTGGTA 58.880 40.000 0.00 0.00 0.00 3.25
4978 6000 5.444176 TCATGGATGTGTATTTGGTATGCA 58.556 37.500 0.00 0.00 0.00 3.96
4979 6001 5.532032 TCATGGATGTGTATTTGGTATGCAG 59.468 40.000 0.00 0.00 0.00 4.41
4996 6018 7.446931 TGGTATGCAGTTAATGTGAGAAAAGAA 59.553 33.333 0.00 0.00 0.00 2.52
4998 6020 6.072112 TGCAGTTAATGTGAGAAAAGAACC 57.928 37.500 0.00 0.00 0.00 3.62
4999 6021 5.827797 TGCAGTTAATGTGAGAAAAGAACCT 59.172 36.000 0.00 0.00 0.00 3.50
5000 6022 6.017109 TGCAGTTAATGTGAGAAAAGAACCTC 60.017 38.462 0.00 0.00 0.00 3.85
5001 6023 6.205658 GCAGTTAATGTGAGAAAAGAACCTCT 59.794 38.462 0.00 0.00 0.00 3.69
5005 6050 8.621286 GTTAATGTGAGAAAAGAACCTCTGAAA 58.379 33.333 0.00 0.00 0.00 2.69
5008 6053 7.088589 TGTGAGAAAAGAACCTCTGAAAAAG 57.911 36.000 0.00 0.00 0.00 2.27
5067 6118 2.032860 ATCCCGTGGATCTCGCCAAG 62.033 60.000 0.05 0.00 38.09 3.61
5068 6119 2.579201 CCGTGGATCTCGCCAAGT 59.421 61.111 0.00 0.00 40.20 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.454573 AATGCATGTGCGGCCCAG 61.455 61.111 0.00 0.00 45.83 4.45
1 2 3.761140 CAATGCATGTGCGGCCCA 61.761 61.111 0.00 0.00 45.83 5.36
12 13 5.640783 CACTATCACTCTCTTTCACAATGCA 59.359 40.000 0.00 0.00 0.00 3.96
14 15 8.939201 ATACACTATCACTCTCTTTCACAATG 57.061 34.615 0.00 0.00 0.00 2.82
40 41 3.378112 CCACATTTTACTGCATCACCGAT 59.622 43.478 0.00 0.00 0.00 4.18
42 43 2.487762 ACCACATTTTACTGCATCACCG 59.512 45.455 0.00 0.00 0.00 4.94
88 89 3.609879 GCCCGTGCGTTGTAATACTTTTT 60.610 43.478 0.00 0.00 0.00 1.94
89 90 2.095617 GCCCGTGCGTTGTAATACTTTT 60.096 45.455 0.00 0.00 0.00 2.27
91 92 1.081094 GCCCGTGCGTTGTAATACTT 58.919 50.000 0.00 0.00 0.00 2.24
92 93 0.741927 GGCCCGTGCGTTGTAATACT 60.742 55.000 0.00 0.00 38.85 2.12
94 95 1.449956 GGGCCCGTGCGTTGTAATA 60.450 57.895 5.69 0.00 38.85 0.98
105 106 0.621609 TAACTAGCAAATGGGCCCGT 59.378 50.000 19.37 15.91 0.00 5.28
109 110 5.576447 TTAGCTTTAACTAGCAAATGGGC 57.424 39.130 0.00 0.00 43.68 5.36
111 112 9.722056 CAGTTATTAGCTTTAACTAGCAAATGG 57.278 33.333 16.85 4.18 43.68 3.16
133 134 7.497909 CGGTTATTACCAAGTCCATATTCAGTT 59.502 37.037 1.20 0.00 45.31 3.16
149 150 4.564372 GTCTTCGTTTCTCCGGTTATTACC 59.436 45.833 0.00 0.00 41.33 2.85
170 172 1.761198 AGCCGGGTTAGATGTAAGGTC 59.239 52.381 0.00 0.00 0.00 3.85
178 180 2.158667 CCCAACAATAGCCGGGTTAGAT 60.159 50.000 13.43 0.00 33.67 1.98
211 213 7.094933 GCGGTTGTTCTTTATTTTCCTCTCTTA 60.095 37.037 0.00 0.00 0.00 2.10
213 215 5.181433 GCGGTTGTTCTTTATTTTCCTCTCT 59.819 40.000 0.00 0.00 0.00 3.10
214 216 5.391449 GCGGTTGTTCTTTATTTTCCTCTC 58.609 41.667 0.00 0.00 0.00 3.20
236 245 5.667466 ACAAATTCTTCAATCCATGATGGC 58.333 37.500 6.59 0.00 38.03 4.40
248 257 8.008844 GCGAAAATATGCAAAACAAATTCTTCA 58.991 29.630 0.00 0.00 0.00 3.02
273 282 4.124970 TGCATCACTCATTATCAGTCTGC 58.875 43.478 0.00 0.00 33.22 4.26
284 295 2.034104 AACAGCGATGCATCACTCAT 57.966 45.000 25.70 9.52 0.00 2.90
329 340 8.391075 TCATGTATGTATATGAGTCACTTCGA 57.609 34.615 0.00 0.00 31.48 3.71
330 341 8.906693 GTTCATGTATGTATATGAGTCACTTCG 58.093 37.037 0.00 0.00 35.66 3.79
331 342 8.906693 CGTTCATGTATGTATATGAGTCACTTC 58.093 37.037 0.00 0.00 35.66 3.01
332 343 8.414003 ACGTTCATGTATGTATATGAGTCACTT 58.586 33.333 0.00 0.00 35.66 3.16
333 344 7.941919 ACGTTCATGTATGTATATGAGTCACT 58.058 34.615 0.00 0.00 35.66 3.41
334 345 9.114965 GTACGTTCATGTATGTATATGAGTCAC 57.885 37.037 7.56 0.00 35.66 3.67
335 346 8.842280 TGTACGTTCATGTATGTATATGAGTCA 58.158 33.333 7.56 0.00 35.66 3.41
336 347 9.114965 GTGTACGTTCATGTATGTATATGAGTC 57.885 37.037 7.56 0.00 35.66 3.36
338 349 9.331106 GAGTGTACGTTCATGTATGTATATGAG 57.669 37.037 7.56 0.00 35.66 2.90
342 353 7.283807 AGGTGAGTGTACGTTCATGTATGTATA 59.716 37.037 7.56 2.88 0.00 1.47
343 354 6.096423 AGGTGAGTGTACGTTCATGTATGTAT 59.904 38.462 7.56 0.00 0.00 2.29
344 355 5.416639 AGGTGAGTGTACGTTCATGTATGTA 59.583 40.000 0.00 0.62 0.00 2.29
346 357 4.744570 AGGTGAGTGTACGTTCATGTATG 58.255 43.478 0.00 0.00 0.00 2.39
348 359 4.077108 AGAGGTGAGTGTACGTTCATGTA 58.923 43.478 0.00 0.00 0.00 2.29
349 360 2.891580 AGAGGTGAGTGTACGTTCATGT 59.108 45.455 0.00 0.00 0.00 3.21
350 361 3.577649 AGAGGTGAGTGTACGTTCATG 57.422 47.619 0.00 0.00 0.00 3.07
351 362 4.948004 TCATAGAGGTGAGTGTACGTTCAT 59.052 41.667 0.00 0.00 0.00 2.57
353 364 4.959596 TCATAGAGGTGAGTGTACGTTC 57.040 45.455 0.00 0.00 0.00 3.95
354 365 4.379186 CGTTCATAGAGGTGAGTGTACGTT 60.379 45.833 0.00 0.00 0.00 3.99
356 367 3.126514 ACGTTCATAGAGGTGAGTGTACG 59.873 47.826 0.00 0.00 35.73 3.67
357 368 4.698583 ACGTTCATAGAGGTGAGTGTAC 57.301 45.455 0.00 0.00 0.00 2.90
358 369 5.220989 GCATACGTTCATAGAGGTGAGTGTA 60.221 44.000 0.00 0.00 0.00 2.90
361 372 3.699538 TGCATACGTTCATAGAGGTGAGT 59.300 43.478 0.00 0.00 0.00 3.41
363 374 4.937201 ATGCATACGTTCATAGAGGTGA 57.063 40.909 0.00 0.00 0.00 4.02
369 380 8.414003 ACAGGGTATATATGCATACGTTCATAG 58.586 37.037 8.99 0.00 33.04 2.23
373 384 6.040878 GGACAGGGTATATATGCATACGTTC 58.959 44.000 8.99 0.72 33.04 3.95
376 387 5.854010 AGGACAGGGTATATATGCATACG 57.146 43.478 8.99 0.00 33.04 3.06
378 389 9.147732 CTCATAAGGACAGGGTATATATGCATA 57.852 37.037 9.27 9.27 0.00 3.14
380 391 6.127054 GCTCATAAGGACAGGGTATATATGCA 60.127 42.308 3.10 0.00 0.00 3.96
384 395 7.422512 AGATGCTCATAAGGACAGGGTATATA 58.577 38.462 0.00 0.00 0.00 0.86
386 397 5.655394 AGATGCTCATAAGGACAGGGTATA 58.345 41.667 0.00 0.00 0.00 1.47
388 399 3.898123 GAGATGCTCATAAGGACAGGGTA 59.102 47.826 0.00 0.00 0.00 3.69
390 401 2.971330 AGAGATGCTCATAAGGACAGGG 59.029 50.000 0.00 0.00 32.06 4.45
394 405 7.437862 CAGTCTTTTAGAGATGCTCATAAGGAC 59.562 40.741 11.91 11.91 36.61 3.85
396 407 7.495901 TCAGTCTTTTAGAGATGCTCATAAGG 58.504 38.462 0.00 0.00 36.61 2.69
410 421 2.029838 ATGCCGGCTCAGTCTTTTAG 57.970 50.000 29.70 0.00 0.00 1.85
412 423 2.489938 TTATGCCGGCTCAGTCTTTT 57.510 45.000 29.70 3.51 0.00 2.27
413 424 2.717639 ATTATGCCGGCTCAGTCTTT 57.282 45.000 29.70 4.59 0.00 2.52
414 425 4.357918 AATATTATGCCGGCTCAGTCTT 57.642 40.909 29.70 11.77 0.00 3.01
432 443 9.921637 GTGATGACTTTGTAAAATCCCAAAATA 57.078 29.630 0.00 0.00 30.75 1.40
435 446 6.515862 CGGTGATGACTTTGTAAAATCCCAAA 60.516 38.462 0.00 0.00 0.00 3.28
439 450 4.142469 CCCGGTGATGACTTTGTAAAATCC 60.142 45.833 0.00 0.00 0.00 3.01
440 451 4.142469 CCCCGGTGATGACTTTGTAAAATC 60.142 45.833 0.00 0.00 0.00 2.17
442 453 3.150767 CCCCGGTGATGACTTTGTAAAA 58.849 45.455 0.00 0.00 0.00 1.52
443 454 2.785562 CCCCGGTGATGACTTTGTAAA 58.214 47.619 0.00 0.00 0.00 2.01
448 459 0.609131 CAAGCCCCGGTGATGACTTT 60.609 55.000 0.00 0.00 0.00 2.66
461 472 3.876589 TTCCGTCGACTGCAAGCCC 62.877 63.158 14.70 0.00 37.60 5.19
479 490 2.679716 GCCAGTGGGAGGAAGCAT 59.320 61.111 12.15 0.00 35.59 3.79
480 491 3.650950 GGCCAGTGGGAGGAAGCA 61.651 66.667 12.15 0.00 35.59 3.91
481 492 4.785453 CGGCCAGTGGGAGGAAGC 62.785 72.222 12.15 0.00 35.59 3.86
483 494 0.619255 TATTCGGCCAGTGGGAGGAA 60.619 55.000 12.15 0.00 35.59 3.36
524 537 7.385267 ACATTGGTGCTTGCATTATTTTTAGA 58.615 30.769 0.00 0.00 0.00 2.10
525 538 7.331440 TGACATTGGTGCTTGCATTATTTTTAG 59.669 33.333 0.00 0.00 0.00 1.85
527 540 5.996513 TGACATTGGTGCTTGCATTATTTTT 59.003 32.000 0.00 0.00 0.00 1.94
530 543 4.804868 TGACATTGGTGCTTGCATTATT 57.195 36.364 0.00 0.00 0.00 1.40
532 545 3.573538 ACTTGACATTGGTGCTTGCATTA 59.426 39.130 0.00 0.00 0.00 1.90
533 546 2.366266 ACTTGACATTGGTGCTTGCATT 59.634 40.909 0.00 0.00 0.00 3.56
537 550 4.756642 TCTTAGACTTGACATTGGTGCTTG 59.243 41.667 0.00 0.00 0.00 4.01
538 551 4.973168 TCTTAGACTTGACATTGGTGCTT 58.027 39.130 0.00 0.00 0.00 3.91
542 555 8.793592 GGTTTAAATCTTAGACTTGACATTGGT 58.206 33.333 0.00 0.00 0.00 3.67
543 556 8.244113 GGGTTTAAATCTTAGACTTGACATTGG 58.756 37.037 0.00 0.00 0.00 3.16
544 557 9.014297 AGGGTTTAAATCTTAGACTTGACATTG 57.986 33.333 0.00 0.00 0.00 2.82
561 579 2.425102 CCCCAGTCAACCAGGGTTTAAA 60.425 50.000 0.00 0.00 41.16 1.52
569 587 4.772100 ACAATAAAATCCCCAGTCAACCAG 59.228 41.667 0.00 0.00 0.00 4.00
576 594 5.536497 AGAAGGACAATAAAATCCCCAGT 57.464 39.130 0.00 0.00 35.38 4.00
580 598 7.014326 GGATGGTTAGAAGGACAATAAAATCCC 59.986 40.741 0.00 0.00 35.38 3.85
585 603 7.060421 GGATGGATGGTTAGAAGGACAATAAA 58.940 38.462 0.00 0.00 0.00 1.40
588 606 4.478317 TGGATGGATGGTTAGAAGGACAAT 59.522 41.667 0.00 0.00 0.00 2.71
605 623 4.400251 ACAACTGAAAGCATATGTGGATGG 59.600 41.667 4.29 0.00 37.60 3.51
608 626 5.822519 GGATACAACTGAAAGCATATGTGGA 59.177 40.000 4.29 0.00 37.60 4.02
609 627 6.064846 GGATACAACTGAAAGCATATGTGG 57.935 41.667 4.29 0.00 37.60 4.17
637 661 8.991243 TGATCAATTTAATTTCTGAGCAAAGG 57.009 30.769 0.00 0.00 31.73 3.11
672 696 9.010029 ACACTTTTCACTTTTTCAGACTCTTAA 57.990 29.630 0.00 0.00 0.00 1.85
673 697 8.561738 ACACTTTTCACTTTTTCAGACTCTTA 57.438 30.769 0.00 0.00 0.00 2.10
686 710 6.332630 CCACAAATCTCAACACTTTTCACTT 58.667 36.000 0.00 0.00 0.00 3.16
691 715 4.709397 TCACCCACAAATCTCAACACTTTT 59.291 37.500 0.00 0.00 0.00 2.27
692 716 4.277476 TCACCCACAAATCTCAACACTTT 58.723 39.130 0.00 0.00 0.00 2.66
693 717 3.885297 CTCACCCACAAATCTCAACACTT 59.115 43.478 0.00 0.00 0.00 3.16
694 718 3.480470 CTCACCCACAAATCTCAACACT 58.520 45.455 0.00 0.00 0.00 3.55
733 782 6.721704 TGTATCGTCTCACTCCTACTACTA 57.278 41.667 0.00 0.00 0.00 1.82
735 784 5.816777 AGTTGTATCGTCTCACTCCTACTAC 59.183 44.000 0.00 0.00 0.00 2.73
736 785 5.987098 AGTTGTATCGTCTCACTCCTACTA 58.013 41.667 0.00 0.00 0.00 1.82
792 841 2.604686 AGTTGGGGAGAGCGCTGA 60.605 61.111 18.48 0.00 0.00 4.26
911 961 1.355720 CAGTTTCCAATCCCAGTCCCT 59.644 52.381 0.00 0.00 0.00 4.20
930 980 1.839747 AGTACCGGCACTTGTCCCA 60.840 57.895 0.00 0.00 0.00 4.37
1378 1443 2.363788 TCAAGGTGAAATCGAGGACG 57.636 50.000 0.00 0.00 41.26 4.79
1379 1444 4.253685 TGAATCAAGGTGAAATCGAGGAC 58.746 43.478 0.00 0.00 0.00 3.85
1417 1495 0.813821 GAGTTCAGGGGCATGAAAGC 59.186 55.000 0.00 0.00 40.72 3.51
1428 1506 3.993081 CAGCTAACAGTTCAGAGTTCAGG 59.007 47.826 0.00 0.00 0.00 3.86
1441 1520 4.816385 TCTGAACTTTGTTCCAGCTAACAG 59.184 41.667 7.81 0.00 40.29 3.16
1489 1570 1.819903 TGTGATGATGTTGGGCATGTG 59.180 47.619 0.00 0.00 38.06 3.21
1496 1577 2.098607 GCAGTGGATGTGATGATGTTGG 59.901 50.000 0.00 0.00 0.00 3.77
1522 1609 7.130303 GTGAAACTAAGGATTCAGGTGTTAC 57.870 40.000 0.00 0.00 35.46 2.50
1539 1626 4.622701 GTTGACTTCAAGCAGTGAAACT 57.377 40.909 0.00 0.00 45.67 2.66
1570 1657 1.858458 TGTTCAGCTCTGTTTTCGACG 59.142 47.619 0.00 0.00 0.00 5.12
1584 1671 4.843220 AATTGAGCTGGTTTCTGTTCAG 57.157 40.909 0.00 0.00 34.69 3.02
1650 1737 3.369892 GCAGGAAGAGCACTTTCATCCTA 60.370 47.826 4.90 0.00 41.92 2.94
1663 1750 4.260170 AGCAACTAATTCAGCAGGAAGAG 58.740 43.478 0.00 0.00 39.30 2.85
1667 1754 5.165961 AGTAAGCAACTAATTCAGCAGGA 57.834 39.130 0.00 0.00 36.36 3.86
1668 1755 5.886960 AAGTAAGCAACTAATTCAGCAGG 57.113 39.130 0.00 0.00 37.50 4.85
1669 1756 6.672147 ACAAAGTAAGCAACTAATTCAGCAG 58.328 36.000 0.00 0.00 37.50 4.24
1671 1758 7.930513 AAACAAAGTAAGCAACTAATTCAGC 57.069 32.000 0.00 0.00 37.50 4.26
1673 1760 8.254508 ACCAAAACAAAGTAAGCAACTAATTCA 58.745 29.630 0.00 0.00 37.50 2.57
1674 1761 8.539674 CACCAAAACAAAGTAAGCAACTAATTC 58.460 33.333 0.00 0.00 37.50 2.17
1676 1763 7.777095 TCACCAAAACAAAGTAAGCAACTAAT 58.223 30.769 0.00 0.00 37.50 1.73
1678 1765 6.761099 TCACCAAAACAAAGTAAGCAACTA 57.239 33.333 0.00 0.00 37.50 2.24
1679 1766 5.652994 TCACCAAAACAAAGTAAGCAACT 57.347 34.783 0.00 0.00 41.49 3.16
1681 1768 5.355596 CCATCACCAAAACAAAGTAAGCAA 58.644 37.500 0.00 0.00 0.00 3.91
1682 1769 4.739137 GCCATCACCAAAACAAAGTAAGCA 60.739 41.667 0.00 0.00 0.00 3.91
1683 1770 3.740832 GCCATCACCAAAACAAAGTAAGC 59.259 43.478 0.00 0.00 0.00 3.09
1684 1771 4.039124 AGGCCATCACCAAAACAAAGTAAG 59.961 41.667 5.01 0.00 0.00 2.34
1685 1772 3.964031 AGGCCATCACCAAAACAAAGTAA 59.036 39.130 5.01 0.00 0.00 2.24
1689 1776 2.392662 TCAGGCCATCACCAAAACAAA 58.607 42.857 5.01 0.00 0.00 2.83
1697 2100 0.106819 ATGCTCTTCAGGCCATCACC 60.107 55.000 5.01 0.00 0.00 4.02
1703 2106 1.751927 CACCCATGCTCTTCAGGCC 60.752 63.158 0.00 0.00 0.00 5.19
1712 2115 1.228245 AAACGCAGACACCCATGCT 60.228 52.632 0.00 0.00 40.34 3.79
1719 2122 3.105937 GGAAGAAAACAAACGCAGACAC 58.894 45.455 0.00 0.00 0.00 3.67
1757 2161 7.515059 GCAAACACAACTATGTTAAGCAAAGTG 60.515 37.037 9.68 0.00 42.01 3.16
1764 2168 8.774586 AGTCTAAGCAAACACAACTATGTTAAG 58.225 33.333 0.00 0.00 42.01 1.85
1786 2190 5.183904 ACAAAAGAGAACTTGCAAACAGTCT 59.816 36.000 0.00 0.44 36.39 3.24
1789 2193 7.992180 ATTACAAAAGAGAACTTGCAAACAG 57.008 32.000 0.00 0.00 36.39 3.16
1846 2250 6.304356 TCTTCATGACAAAACTTAGCAGTG 57.696 37.500 0.00 0.00 31.60 3.66
1884 2288 2.143122 TCACACATTTCTTGCCGTCTC 58.857 47.619 0.00 0.00 0.00 3.36
1889 2293 4.936891 ACTTTCTTCACACATTTCTTGCC 58.063 39.130 0.00 0.00 0.00 4.52
1890 2294 6.892310 AAACTTTCTTCACACATTTCTTGC 57.108 33.333 0.00 0.00 0.00 4.01
2029 2433 0.827507 TTGAGGCAAAGGTTCCCTGC 60.828 55.000 5.32 5.32 32.13 4.85
2041 2445 4.278975 ACAAAAACAAACCTTTGAGGCA 57.721 36.364 4.77 0.00 39.63 4.75
2044 2448 7.860613 AGAACAAACAAAAACAAACCTTTGAG 58.139 30.769 4.77 0.00 40.55 3.02
2058 2463 8.050778 ACTGACATCTAACAAGAACAAACAAA 57.949 30.769 0.00 0.00 0.00 2.83
2071 2476 7.907214 AAACCTGACATTACTGACATCTAAC 57.093 36.000 0.00 0.00 0.00 2.34
2078 2483 9.559958 CAATGATAAAAACCTGACATTACTGAC 57.440 33.333 0.00 0.00 0.00 3.51
2083 2488 7.812191 GTGTGCAATGATAAAAACCTGACATTA 59.188 33.333 0.00 0.00 0.00 1.90
2098 2559 3.016031 TCAAATAGCCGTGTGCAATGAT 58.984 40.909 0.00 0.00 44.83 2.45
2123 2584 4.032900 CGAACGACCAAAATGATCTAGTGG 59.967 45.833 0.00 0.00 35.39 4.00
2124 2585 4.862574 TCGAACGACCAAAATGATCTAGTG 59.137 41.667 0.00 0.00 0.00 2.74
2125 2586 5.068234 TCGAACGACCAAAATGATCTAGT 57.932 39.130 0.00 0.00 0.00 2.57
2126 2587 6.589830 ATTCGAACGACCAAAATGATCTAG 57.410 37.500 0.00 0.00 0.00 2.43
2127 2588 7.010738 GGTTATTCGAACGACCAAAATGATCTA 59.989 37.037 20.98 0.00 32.41 1.98
2128 2589 6.183360 GGTTATTCGAACGACCAAAATGATCT 60.183 38.462 20.98 0.00 32.41 2.75
2129 2590 5.963586 GGTTATTCGAACGACCAAAATGATC 59.036 40.000 20.98 0.00 32.41 2.92
2131 2592 4.755629 TGGTTATTCGAACGACCAAAATGA 59.244 37.500 24.48 7.32 39.11 2.57
2132 2593 4.849383 GTGGTTATTCGAACGACCAAAATG 59.151 41.667 26.92 0.00 43.25 2.32
2133 2594 4.758165 AGTGGTTATTCGAACGACCAAAAT 59.242 37.500 26.92 17.17 43.25 1.82
2136 2597 3.061322 CAGTGGTTATTCGAACGACCAA 58.939 45.455 26.92 14.23 43.25 3.67
2138 2599 2.921754 CTCAGTGGTTATTCGAACGACC 59.078 50.000 19.73 19.73 30.55 4.79
2139 2600 3.607209 GTCTCAGTGGTTATTCGAACGAC 59.393 47.826 0.00 1.72 0.00 4.34
2141 2605 3.608506 CAGTCTCAGTGGTTATTCGAACG 59.391 47.826 0.00 0.00 0.00 3.95
2144 2608 4.678044 GCATCAGTCTCAGTGGTTATTCGA 60.678 45.833 0.00 0.00 0.00 3.71
2146 2610 4.507710 TGCATCAGTCTCAGTGGTTATTC 58.492 43.478 0.00 0.00 0.00 1.75
2152 2616 2.983907 AGATGCATCAGTCTCAGTGG 57.016 50.000 27.81 0.00 0.00 4.00
2178 2643 6.058183 AGTACCCATCAGTTATTCAGATTGC 58.942 40.000 0.00 0.00 0.00 3.56
2183 2648 8.307483 CCATACTAGTACCCATCAGTTATTCAG 58.693 40.741 4.31 0.00 0.00 3.02
2193 2658 9.877178 CAATTAAGATCCATACTAGTACCCATC 57.123 37.037 4.31 6.70 0.00 3.51
2239 2704 8.741603 AGTACAACACCAGTTACAAAAATAGT 57.258 30.769 0.00 0.00 35.85 2.12
2248 2713 9.442033 GTTTCAAATTAGTACAACACCAGTTAC 57.558 33.333 0.00 0.00 35.85 2.50
2249 2714 9.175312 TGTTTCAAATTAGTACAACACCAGTTA 57.825 29.630 0.00 0.00 35.85 2.24
2295 2764 1.198637 GTGTGTTGGCTGAGATTCTGC 59.801 52.381 0.00 0.00 40.10 4.26
2301 2770 2.346766 AACATGTGTGTTGGCTGAGA 57.653 45.000 0.00 0.00 46.43 3.27
2350 2819 2.195096 CAGTTTGGTCGTAACGTGTCA 58.805 47.619 0.00 0.00 0.00 3.58
2351 2820 2.195922 ACAGTTTGGTCGTAACGTGTC 58.804 47.619 0.00 0.00 0.00 3.67
2356 2825 2.033151 GCTGTGACAGTTTGGTCGTAAC 60.033 50.000 14.82 0.00 40.72 2.50
2361 2830 1.507141 CGGGCTGTGACAGTTTGGTC 61.507 60.000 14.82 0.00 38.29 4.02
2362 2831 1.525995 CGGGCTGTGACAGTTTGGT 60.526 57.895 14.82 0.00 33.43 3.67
2363 2832 1.525995 ACGGGCTGTGACAGTTTGG 60.526 57.895 14.82 4.21 33.43 3.28
2364 2833 4.141144 ACGGGCTGTGACAGTTTG 57.859 55.556 14.82 6.51 33.43 2.93
2377 2846 1.555477 TAAACAGGGTAGGGCACGGG 61.555 60.000 0.00 0.00 0.00 5.28
2378 2847 0.392060 GTAAACAGGGTAGGGCACGG 60.392 60.000 0.00 0.00 0.00 4.94
2379 2848 0.611714 AGTAAACAGGGTAGGGCACG 59.388 55.000 0.00 0.00 0.00 5.34
2380 2849 2.817844 CAAAGTAAACAGGGTAGGGCAC 59.182 50.000 0.00 0.00 0.00 5.01
2381 2850 2.816337 GCAAAGTAAACAGGGTAGGGCA 60.816 50.000 0.00 0.00 0.00 5.36
2382 2851 1.816835 GCAAAGTAAACAGGGTAGGGC 59.183 52.381 0.00 0.00 0.00 5.19
2383 2852 3.149005 TGCAAAGTAAACAGGGTAGGG 57.851 47.619 0.00 0.00 0.00 3.53
2384 2853 4.082245 CCATTGCAAAGTAAACAGGGTAGG 60.082 45.833 1.71 0.00 0.00 3.18
2385 2854 4.764823 TCCATTGCAAAGTAAACAGGGTAG 59.235 41.667 1.71 0.00 0.00 3.18
2386 2855 4.730966 TCCATTGCAAAGTAAACAGGGTA 58.269 39.130 1.71 0.00 0.00 3.69
2387 2856 3.571590 TCCATTGCAAAGTAAACAGGGT 58.428 40.909 1.71 0.00 0.00 4.34
2407 2876 3.074412 TCGCTTCAAGGTGGAGAAAATC 58.926 45.455 0.00 0.00 0.00 2.17
2450 2920 5.634020 AGAACCATTAGTCGAAGAAACGAAG 59.366 40.000 0.00 0.00 43.75 3.79
2453 2923 4.921515 TCAGAACCATTAGTCGAAGAAACG 59.078 41.667 0.00 0.00 39.69 3.60
2461 2931 4.183865 TCAGCAATCAGAACCATTAGTCG 58.816 43.478 0.00 0.00 0.00 4.18
2464 2934 6.748333 TCTTTCAGCAATCAGAACCATTAG 57.252 37.500 0.00 0.00 0.00 1.73
2481 2951 1.276138 TGCAAGGCGAGAGATCTTTCA 59.724 47.619 13.26 0.00 0.00 2.69
2517 2987 2.755655 GGAGAGTGACTGCAGCTTAGTA 59.244 50.000 15.27 0.00 36.93 1.82
2529 2999 1.689273 ACAGTGGTCTTGGAGAGTGAC 59.311 52.381 0.00 0.00 0.00 3.67
2578 3048 3.488778 AGCTCTGGAATGCCTAGAATG 57.511 47.619 0.00 0.00 34.31 2.67
2579 3049 4.205587 CAAAGCTCTGGAATGCCTAGAAT 58.794 43.478 0.00 0.00 34.31 2.40
2583 3053 1.683011 GCCAAAGCTCTGGAATGCCTA 60.683 52.381 11.25 0.00 38.96 3.93
2600 3070 1.257750 TTCTAGCGCAGAGGAAGCCA 61.258 55.000 11.47 0.00 33.83 4.75
2613 3083 2.680339 GCATGGGAAACTCTGTTCTAGC 59.320 50.000 0.00 0.00 0.00 3.42
2618 3088 1.620822 GTGGCATGGGAAACTCTGTT 58.379 50.000 0.00 0.00 0.00 3.16
2640 3118 6.509656 CAGGAAATGAATGGGTATGTCATTG 58.490 40.000 0.00 0.00 40.28 2.82
2644 3122 3.953612 TGCAGGAAATGAATGGGTATGTC 59.046 43.478 0.00 0.00 0.00 3.06
2649 3127 1.188863 GCTGCAGGAAATGAATGGGT 58.811 50.000 17.12 0.00 0.00 4.51
2659 3137 2.203337 GGTGTGGTGCTGCAGGAA 60.203 61.111 17.12 0.00 0.00 3.36
2685 3163 5.104735 AGTTCCCTTGGCAATACAAAACAAA 60.105 36.000 0.00 0.00 0.00 2.83
2688 3166 4.306600 CAGTTCCCTTGGCAATACAAAAC 58.693 43.478 0.00 2.03 0.00 2.43
2705 3183 4.510038 AACTGAATGTTGATGCCAGTTC 57.490 40.909 0.00 0.00 42.36 3.01
2712 3190 6.261118 GGCTAGCTAAAACTGAATGTTGATG 58.739 40.000 15.72 0.00 39.13 3.07
2714 3192 4.700213 GGGCTAGCTAAAACTGAATGTTGA 59.300 41.667 15.72 0.00 39.13 3.18
2718 3196 3.557595 CGAGGGCTAGCTAAAACTGAATG 59.442 47.826 15.72 0.00 0.00 2.67
2740 3218 2.474410 ATCCCTGAAAACGTCCAGAC 57.526 50.000 12.36 0.00 32.37 3.51
2747 3225 5.572896 GCTGACAATTAAATCCCTGAAAACG 59.427 40.000 0.00 0.00 0.00 3.60
2752 3230 4.018506 TCTGGCTGACAATTAAATCCCTGA 60.019 41.667 0.00 0.00 0.00 3.86
2755 3233 4.706962 ACTTCTGGCTGACAATTAAATCCC 59.293 41.667 0.00 0.00 0.00 3.85
2762 3241 2.694628 TGCAAACTTCTGGCTGACAATT 59.305 40.909 0.00 0.00 0.00 2.32
2765 3244 1.677576 CTTGCAAACTTCTGGCTGACA 59.322 47.619 0.00 0.00 0.00 3.58
2766 3245 1.949525 TCTTGCAAACTTCTGGCTGAC 59.050 47.619 0.00 0.00 0.00 3.51
2797 3276 6.039605 GGAGAAGAACCTACTGAGTACCATAC 59.960 46.154 0.00 0.00 0.00 2.39
2803 3282 3.596956 AGGGGAGAAGAACCTACTGAGTA 59.403 47.826 0.00 0.00 31.53 2.59
2809 3288 2.553911 AGGAGGGGAGAAGAACCTAC 57.446 55.000 0.00 0.00 35.35 3.18
2813 3292 7.220740 CAAGATATAAAGGAGGGGAGAAGAAC 58.779 42.308 0.00 0.00 0.00 3.01
2815 3294 5.846714 CCAAGATATAAAGGAGGGGAGAAGA 59.153 44.000 0.00 0.00 0.00 2.87
2822 3324 4.137543 GCACACCAAGATATAAAGGAGGG 58.862 47.826 0.00 0.00 0.00 4.30
2840 3342 0.975887 TCATGAGCTACACAGGCACA 59.024 50.000 0.00 0.00 35.12 4.57
2842 3344 0.538584 CCTCATGAGCTACACAGGCA 59.461 55.000 17.76 0.00 0.00 4.75
2843 3345 0.826715 TCCTCATGAGCTACACAGGC 59.173 55.000 17.76 0.00 33.94 4.85
2844 3346 2.499289 ACTTCCTCATGAGCTACACAGG 59.501 50.000 17.76 1.95 34.75 4.00
2845 3347 3.883830 ACTTCCTCATGAGCTACACAG 57.116 47.619 17.76 8.06 0.00 3.66
2846 3348 4.772624 ACTAACTTCCTCATGAGCTACACA 59.227 41.667 17.76 0.07 0.00 3.72
2847 3349 5.331876 ACTAACTTCCTCATGAGCTACAC 57.668 43.478 17.76 0.00 0.00 2.90
2848 3350 4.096532 CGACTAACTTCCTCATGAGCTACA 59.903 45.833 17.76 0.00 0.00 2.74
2849 3351 4.335874 TCGACTAACTTCCTCATGAGCTAC 59.664 45.833 17.76 0.41 0.00 3.58
2850 3352 4.524053 TCGACTAACTTCCTCATGAGCTA 58.476 43.478 17.76 4.53 0.00 3.32
2851 3353 3.357203 TCGACTAACTTCCTCATGAGCT 58.643 45.455 17.76 0.00 0.00 4.09
2852 3354 3.490078 CCTCGACTAACTTCCTCATGAGC 60.490 52.174 17.76 0.00 0.00 4.26
2853 3355 3.490078 GCCTCGACTAACTTCCTCATGAG 60.490 52.174 16.24 16.24 0.00 2.90
2854 3356 2.427453 GCCTCGACTAACTTCCTCATGA 59.573 50.000 0.00 0.00 0.00 3.07
2855 3357 2.166459 TGCCTCGACTAACTTCCTCATG 59.834 50.000 0.00 0.00 0.00 3.07
2856 3358 2.457598 TGCCTCGACTAACTTCCTCAT 58.542 47.619 0.00 0.00 0.00 2.90
2857 3359 1.919240 TGCCTCGACTAACTTCCTCA 58.081 50.000 0.00 0.00 0.00 3.86
2858 3360 2.231721 AGTTGCCTCGACTAACTTCCTC 59.768 50.000 0.00 0.00 30.98 3.71
2859 3361 2.028930 CAGTTGCCTCGACTAACTTCCT 60.029 50.000 2.43 0.00 32.69 3.36
2860 3362 2.338500 CAGTTGCCTCGACTAACTTCC 58.662 52.381 2.43 0.00 32.69 3.46
2861 3363 1.727335 GCAGTTGCCTCGACTAACTTC 59.273 52.381 2.43 0.00 32.69 3.01
2862 3364 1.344763 AGCAGTTGCCTCGACTAACTT 59.655 47.619 0.00 0.00 43.38 2.66
2863 3365 0.969894 AGCAGTTGCCTCGACTAACT 59.030 50.000 0.00 0.00 43.38 2.24
2864 3366 2.094649 ACTAGCAGTTGCCTCGACTAAC 60.095 50.000 0.00 0.00 43.38 2.34
2865 3367 2.094700 CACTAGCAGTTGCCTCGACTAA 60.095 50.000 0.00 0.00 43.38 2.24
2866 3368 1.472878 CACTAGCAGTTGCCTCGACTA 59.527 52.381 0.00 0.00 43.38 2.59
2867 3369 0.244994 CACTAGCAGTTGCCTCGACT 59.755 55.000 0.00 0.00 43.38 4.18
2868 3370 1.355066 GCACTAGCAGTTGCCTCGAC 61.355 60.000 0.00 0.00 43.38 4.20
2869 3371 1.079819 GCACTAGCAGTTGCCTCGA 60.080 57.895 0.00 0.00 43.38 4.04
2870 3372 3.479370 GCACTAGCAGTTGCCTCG 58.521 61.111 0.00 0.00 43.38 4.63
2880 3382 1.598882 GCTAAAGGGGATGCACTAGC 58.401 55.000 0.00 0.00 42.57 3.42
2881 3383 1.412710 TCGCTAAAGGGGATGCACTAG 59.587 52.381 0.00 0.00 31.76 2.57
2882 3384 1.491668 TCGCTAAAGGGGATGCACTA 58.508 50.000 0.00 0.00 31.76 2.74
2900 3402 3.189080 GCCCCTGCAAAATGATGTTTTTC 59.811 43.478 0.00 0.00 37.47 2.29
2903 3405 1.003464 GGCCCCTGCAAAATGATGTTT 59.997 47.619 0.00 0.00 40.13 2.83
2932 3442 3.679389 GAGTGAATCTCTTCCTTTGGCA 58.321 45.455 0.00 0.00 39.86 4.92
2935 3445 3.329386 TGCGAGTGAATCTCTTCCTTTG 58.671 45.455 0.00 0.00 40.75 2.77
2936 3446 3.685139 TGCGAGTGAATCTCTTCCTTT 57.315 42.857 0.00 0.00 40.75 3.11
2940 3450 4.683781 GGTGATATGCGAGTGAATCTCTTC 59.316 45.833 0.00 0.00 40.75 2.87
2947 3457 1.138859 CCCAGGTGATATGCGAGTGAA 59.861 52.381 0.00 0.00 0.00 3.18
2948 3458 0.752658 CCCAGGTGATATGCGAGTGA 59.247 55.000 0.00 0.00 0.00 3.41
2951 3461 0.319040 CGTCCCAGGTGATATGCGAG 60.319 60.000 0.00 0.00 0.00 5.03
2953 3463 1.956170 GCGTCCCAGGTGATATGCG 60.956 63.158 0.00 0.00 0.00 4.73
2954 3464 0.882042 CAGCGTCCCAGGTGATATGC 60.882 60.000 0.00 0.00 41.72 3.14
2955 3465 0.465705 ACAGCGTCCCAGGTGATATG 59.534 55.000 3.10 0.00 41.72 1.78
2956 3466 0.753262 GACAGCGTCCCAGGTGATAT 59.247 55.000 3.10 0.00 41.72 1.63
2957 3467 1.327690 GGACAGCGTCCCAGGTGATA 61.328 60.000 14.46 0.00 46.19 2.15
2958 3468 2.660064 GGACAGCGTCCCAGGTGAT 61.660 63.158 14.46 0.00 46.19 3.06
2959 3469 3.311110 GGACAGCGTCCCAGGTGA 61.311 66.667 14.46 0.00 46.19 4.02
3002 3513 2.029470 AGAAGAGCAGCTGTGTACTCAC 60.029 50.000 16.64 10.83 44.08 3.51
3012 3524 2.456627 TTCCACCAGAAGAGCAGCT 58.543 52.632 0.00 0.00 0.00 4.24
3020 3532 1.494721 AGGTTTGAGCTTCCACCAGAA 59.505 47.619 10.76 0.00 0.00 3.02
3046 3558 5.880332 GTGATGACATAAACAAAGGCTCCTA 59.120 40.000 0.00 0.00 0.00 2.94
3083 3595 5.865085 TGTGCTTCCAACTTATACAAGAGT 58.135 37.500 0.00 0.00 35.60 3.24
3088 3600 7.552687 CCTAGAAATGTGCTTCCAACTTATACA 59.447 37.037 0.00 0.00 0.00 2.29
3112 3640 1.001406 CAGAACCGAAGCAGAAGACCT 59.999 52.381 0.00 0.00 0.00 3.85
3113 3641 1.270358 ACAGAACCGAAGCAGAAGACC 60.270 52.381 0.00 0.00 0.00 3.85
3211 4042 9.424319 CTGAAAATAGTTACTTCTAGTGCTCAA 57.576 33.333 0.00 0.00 0.00 3.02
3235 4066 3.209410 ACAGCAAGTTCTTTCCTCACTG 58.791 45.455 0.00 0.00 0.00 3.66
3429 4261 7.446625 AGCACAGTAAAAGAGATGTTCAAGAAT 59.553 33.333 0.00 0.00 0.00 2.40
3437 4269 3.499918 GCACAGCACAGTAAAAGAGATGT 59.500 43.478 0.00 0.00 0.00 3.06
3485 4317 1.200020 GAACCTTGAGAACCATTGGCG 59.800 52.381 1.54 0.00 0.00 5.69
3608 4441 4.943705 GGTAAATCCAAGCAGATTGTCTCA 59.056 41.667 0.00 0.00 36.59 3.27
3663 4496 7.010023 GCAGTCTACTGAAAATAAGAAACACG 58.990 38.462 14.21 0.00 46.59 4.49
3772 4608 0.457443 GGAGCCAAACCATAGCTTGC 59.543 55.000 0.00 0.00 36.87 4.01
3817 4655 3.719268 AGACAGAAACCATGGCATGTA 57.281 42.857 24.80 0.00 0.00 2.29
3900 4739 5.368989 ACTTTCTTGATCACCTTCGACTTT 58.631 37.500 0.00 0.00 0.00 2.66
4083 4923 3.066203 GGGGTCGCGATTTATTTGAATGT 59.934 43.478 14.06 0.00 0.00 2.71
4097 4937 4.899239 GGAGCATCTGGGGTCGCG 62.899 72.222 0.00 0.00 36.17 5.87
4103 4944 2.579873 CAAATGGTAGGAGCATCTGGG 58.420 52.381 0.00 0.00 34.88 4.45
4126 4967 8.627208 TGGATTAGCATCTCCTTATTTTCATC 57.373 34.615 0.00 0.00 32.47 2.92
4146 4987 0.038166 ACCGCTGGACACAATGGATT 59.962 50.000 1.50 0.00 0.00 3.01
4224 5065 5.683876 TCCACCCAAATTTGTCTCAAAAA 57.316 34.783 16.73 0.00 0.00 1.94
4225 5066 5.683876 TTCCACCCAAATTTGTCTCAAAA 57.316 34.783 16.73 2.01 0.00 2.44
4226 5067 5.188751 AGTTTCCACCCAAATTTGTCTCAAA 59.811 36.000 16.73 6.48 0.00 2.69
4227 5068 4.714308 AGTTTCCACCCAAATTTGTCTCAA 59.286 37.500 16.73 0.88 0.00 3.02
4228 5069 4.099266 CAGTTTCCACCCAAATTTGTCTCA 59.901 41.667 16.73 0.00 0.00 3.27
4229 5070 4.340950 TCAGTTTCCACCCAAATTTGTCTC 59.659 41.667 16.73 0.00 0.00 3.36
4230 5071 4.285863 TCAGTTTCCACCCAAATTTGTCT 58.714 39.130 16.73 0.00 0.00 3.41
4231 5072 4.664150 TCAGTTTCCACCCAAATTTGTC 57.336 40.909 16.73 0.00 0.00 3.18
4232 5073 4.469586 AGTTCAGTTTCCACCCAAATTTGT 59.530 37.500 16.73 0.00 0.00 2.83
4233 5074 4.810491 CAGTTCAGTTTCCACCCAAATTTG 59.190 41.667 11.40 11.40 0.00 2.32
4234 5075 4.141733 CCAGTTCAGTTTCCACCCAAATTT 60.142 41.667 0.00 0.00 0.00 1.82
4235 5076 3.387699 CCAGTTCAGTTTCCACCCAAATT 59.612 43.478 0.00 0.00 0.00 1.82
4236 5077 2.965147 CCAGTTCAGTTTCCACCCAAAT 59.035 45.455 0.00 0.00 0.00 2.32
4237 5078 2.291930 ACCAGTTCAGTTTCCACCCAAA 60.292 45.455 0.00 0.00 0.00 3.28
4238 5079 1.286553 ACCAGTTCAGTTTCCACCCAA 59.713 47.619 0.00 0.00 0.00 4.12
4239 5080 0.923358 ACCAGTTCAGTTTCCACCCA 59.077 50.000 0.00 0.00 0.00 4.51
4240 5081 2.067365 AACCAGTTCAGTTTCCACCC 57.933 50.000 0.00 0.00 0.00 4.61
4241 5082 4.023193 CACATAACCAGTTCAGTTTCCACC 60.023 45.833 0.00 0.00 0.00 4.61
4242 5083 4.578928 ACACATAACCAGTTCAGTTTCCAC 59.421 41.667 0.00 0.00 0.00 4.02
4243 5084 4.787551 ACACATAACCAGTTCAGTTTCCA 58.212 39.130 0.00 0.00 0.00 3.53
4244 5085 5.519722 CAACACATAACCAGTTCAGTTTCC 58.480 41.667 0.00 0.00 0.00 3.13
4245 5086 4.976116 GCAACACATAACCAGTTCAGTTTC 59.024 41.667 0.00 0.00 0.00 2.78
4246 5087 4.644685 AGCAACACATAACCAGTTCAGTTT 59.355 37.500 0.00 0.00 0.00 2.66
4247 5088 4.036734 CAGCAACACATAACCAGTTCAGTT 59.963 41.667 0.00 0.00 0.00 3.16
4248 5089 3.565482 CAGCAACACATAACCAGTTCAGT 59.435 43.478 0.00 0.00 0.00 3.41
4249 5090 3.058016 CCAGCAACACATAACCAGTTCAG 60.058 47.826 0.00 0.00 0.00 3.02
4250 5091 2.884012 CCAGCAACACATAACCAGTTCA 59.116 45.455 0.00 0.00 0.00 3.18
4314 5163 2.203209 CGGCCCATCTACAAGCCC 60.203 66.667 0.00 0.00 42.66 5.19
4330 5179 1.226101 GCATGTTGGTCGCATGACG 60.226 57.895 9.17 0.00 46.49 4.35
4359 5208 7.148590 CCATAAAGTTAAGCTGGTTGAATTTGC 60.149 37.037 16.45 0.00 0.00 3.68
4398 5247 8.914011 AGAAACAGTCCATAAGTTAAGCTTTTT 58.086 29.630 3.20 0.00 38.57 1.94
4399 5248 8.465273 AGAAACAGTCCATAAGTTAAGCTTTT 57.535 30.769 3.20 0.00 38.57 2.27
4400 5249 8.465273 AAGAAACAGTCCATAAGTTAAGCTTT 57.535 30.769 3.20 0.00 38.57 3.51
4401 5250 9.740710 ATAAGAAACAGTCCATAAGTTAAGCTT 57.259 29.630 3.48 3.48 41.05 3.74
4433 5282 8.697960 CGAGTACTCCAGTAAGTTAAACTTTTC 58.302 37.037 17.23 0.00 39.51 2.29
4437 5286 6.006449 TCCGAGTACTCCAGTAAGTTAAACT 58.994 40.000 17.23 0.00 31.52 2.66
4438 5287 6.259550 TCCGAGTACTCCAGTAAGTTAAAC 57.740 41.667 17.23 0.00 31.52 2.01
4441 5290 6.660521 TGATTTCCGAGTACTCCAGTAAGTTA 59.339 38.462 17.23 0.00 31.52 2.24
4448 5297 4.927978 ATCTGATTTCCGAGTACTCCAG 57.072 45.455 17.23 15.81 0.00 3.86
4459 5308 4.400567 GCATAGGGGCATTATCTGATTTCC 59.599 45.833 0.00 0.00 0.00 3.13
4463 5312 2.243221 GGGCATAGGGGCATTATCTGAT 59.757 50.000 0.00 0.00 45.66 2.90
4469 5318 3.600919 GGGGGCATAGGGGCATTA 58.399 61.111 0.00 0.00 45.66 1.90
4493 5343 5.725551 TGGTGTATGGGGATGTCTAAATT 57.274 39.130 0.00 0.00 0.00 1.82
4495 5345 5.222151 TGTTTGGTGTATGGGGATGTCTAAA 60.222 40.000 0.00 0.00 0.00 1.85
4496 5346 4.289934 TGTTTGGTGTATGGGGATGTCTAA 59.710 41.667 0.00 0.00 0.00 2.10
4516 5370 2.787473 TCGAGATGGCTCCAAATGTT 57.213 45.000 0.00 0.00 37.91 2.71
4526 5380 2.474816 ACGAATAGCTTTCGAGATGGC 58.525 47.619 26.61 0.00 43.97 4.40
4535 5389 6.373216 TGCAAGGTACATTTACGAATAGCTTT 59.627 34.615 0.00 0.00 0.00 3.51
4545 5399 4.561938 GGGGGTTTTGCAAGGTACATTTAC 60.562 45.833 0.00 0.00 0.00 2.01
4577 5437 2.753966 CCATCTTTCCACGCGGCAG 61.754 63.158 12.47 0.00 0.00 4.85
4580 5440 1.079127 AGACCATCTTTCCACGCGG 60.079 57.895 12.47 0.00 0.00 6.46
4582 5442 1.084370 CGGAGACCATCTTTCCACGC 61.084 60.000 0.00 0.00 0.00 5.34
4583 5443 0.460284 CCGGAGACCATCTTTCCACG 60.460 60.000 0.00 0.00 0.00 4.94
4584 5444 0.744771 GCCGGAGACCATCTTTCCAC 60.745 60.000 5.05 0.00 0.00 4.02
4585 5445 1.602237 GCCGGAGACCATCTTTCCA 59.398 57.895 5.05 0.00 0.00 3.53
4586 5446 1.521681 CGCCGGAGACCATCTTTCC 60.522 63.158 5.05 0.00 0.00 3.13
4625 5492 5.749620 TCGATTGCGATCTACTAAGTCTTC 58.250 41.667 12.19 0.00 42.51 2.87
4648 5515 2.031683 CGCACGGTTGAAGAGAAAGTTT 59.968 45.455 0.00 0.00 0.00 2.66
4669 5536 2.096248 TGTGTTTGGTGGTGGTTCTTC 58.904 47.619 0.00 0.00 0.00 2.87
4795 5666 2.488153 CCCTTTAGGAGCAAAAACCTCG 59.512 50.000 0.00 0.00 38.24 4.63
4810 5695 3.497227 GGACAGTTGTGCCTTACCCTTTA 60.497 47.826 0.00 0.00 0.00 1.85
4818 5703 1.212935 AGTGAAGGACAGTTGTGCCTT 59.787 47.619 12.65 12.65 44.32 4.35
4834 5719 2.466520 TTAGAGCGCGCGTGAAGTGA 62.467 55.000 32.35 8.95 0.00 3.41
4840 5725 2.317689 CACATTAGAGCGCGCGTG 59.682 61.111 32.35 21.80 0.00 5.34
4846 5731 1.756375 GCGAGGCACACATTAGAGCG 61.756 60.000 0.00 0.00 0.00 5.03
4872 5757 4.555709 TGGTTCGGCACACGGCTT 62.556 61.111 0.00 0.00 44.45 4.35
4899 5813 6.634837 TGCGCAAAATTATATGTAAATCACCG 59.365 34.615 8.16 0.00 0.00 4.94
4929 5940 5.815581 ACCATACTAACCATGACACACATT 58.184 37.500 0.00 0.00 37.07 2.71
4932 5943 5.086104 AGACCATACTAACCATGACACAC 57.914 43.478 0.00 0.00 0.00 3.82
4936 5947 5.760253 CCATGAAGACCATACTAACCATGAC 59.240 44.000 0.00 0.00 33.31 3.06
4941 5963 5.760253 CACATCCATGAAGACCATACTAACC 59.240 44.000 0.00 0.00 33.31 2.85
4965 5987 8.208718 TCTCACATTAACTGCATACCAAATAC 57.791 34.615 0.00 0.00 0.00 1.89
4974 5996 6.491403 AGGTTCTTTTCTCACATTAACTGCAT 59.509 34.615 0.00 0.00 0.00 3.96
4978 6000 7.509546 TCAGAGGTTCTTTTCTCACATTAACT 58.490 34.615 0.00 0.00 32.76 2.24
4979 6001 7.730364 TCAGAGGTTCTTTTCTCACATTAAC 57.270 36.000 0.00 0.00 32.76 2.01
4999 6021 3.879295 CACTTGTGCTCCTCTTTTTCAGA 59.121 43.478 0.00 0.00 0.00 3.27
5000 6022 3.629398 ACACTTGTGCTCCTCTTTTTCAG 59.371 43.478 0.10 0.00 0.00 3.02
5001 6023 3.620488 ACACTTGTGCTCCTCTTTTTCA 58.380 40.909 0.10 0.00 0.00 2.69
5005 6050 4.520492 CCAAATACACTTGTGCTCCTCTTT 59.480 41.667 0.10 0.00 0.00 2.52
5008 6053 2.749621 CCCAAATACACTTGTGCTCCTC 59.250 50.000 0.10 0.00 0.00 3.71
5019 6064 1.621317 CCAACCCCAACCCAAATACAC 59.379 52.381 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.