Multiple sequence alignment - TraesCS6A01G408300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G408300 chr6A 100.000 2988 0 0 1 2988 613239021 613236034 0.000000e+00 5518.0
1 TraesCS6A01G408300 chr6A 95.018 562 8 4 2446 2988 613171575 613171015 0.000000e+00 865.0
2 TraesCS6A01G408300 chr6A 96.970 495 10 5 2496 2988 613153393 613152902 0.000000e+00 826.0
3 TraesCS6A01G408300 chr6A 98.319 357 3 3 2634 2988 613190562 613190207 9.100000e-175 623.0
4 TraesCS6A01G408300 chr6A 93.506 154 8 2 2836 2988 613217925 613217773 8.330000e-56 228.0
5 TraesCS6A01G408300 chr6A 100.000 63 0 0 2446 2508 613153512 613153450 1.880000e-22 117.0
6 TraesCS6A01G408300 chr6A 100.000 63 0 0 2446 2508 613190682 613190620 1.880000e-22 117.0
7 TraesCS6A01G408300 chr6A 100.000 48 0 0 2500 2547 613190611 613190564 4.100000e-14 89.8
8 TraesCS6A01G408300 chr6D 93.365 2321 58 26 738 2988 466909464 466907170 0.000000e+00 3345.0
9 TraesCS6A01G408300 chr6D 85.338 607 52 12 43 646 466910149 466909577 7.130000e-166 593.0
10 TraesCS6A01G408300 chr6B 86.198 2420 193 75 121 2465 712102450 712104803 0.000000e+00 2488.0
11 TraesCS6A01G408300 chr7D 77.391 575 122 8 1403 1973 58829831 58830401 4.770000e-88 335.0
12 TraesCS6A01G408300 chr7D 77.345 565 110 13 1431 1980 31119665 31120226 4.810000e-83 318.0
13 TraesCS6A01G408300 chr7A 77.119 590 122 11 1399 1980 31592092 31592676 2.220000e-86 329.0
14 TraesCS6A01G408300 chr4A 77.514 547 115 8 1431 1973 675932638 675933180 3.720000e-84 322.0
15 TraesCS6A01G408300 chr1A 94.030 201 8 3 1405 1603 562042737 562042935 4.840000e-78 302.0
16 TraesCS6A01G408300 chr1D 93.532 201 9 3 1405 1603 469053086 469053284 2.250000e-76 296.0
17 TraesCS6A01G408300 chr3B 79.703 404 74 8 1403 1802 74762535 74762934 4.870000e-73 285.0
18 TraesCS6A01G408300 chr3A 80.697 373 66 6 1433 1802 60029366 60028997 4.870000e-73 285.0
19 TraesCS6A01G408300 chr3A 79.088 373 72 6 1433 1802 60006053 60005684 4.940000e-63 252.0
20 TraesCS6A01G408300 chr3D 79.839 372 71 4 1433 1802 47708363 47707994 4.910000e-68 268.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G408300 chr6A 613236034 613239021 2987 True 5518.0 5518 100.0000 1 2988 1 chr6A.!!$R3 2987
1 TraesCS6A01G408300 chr6A 613171015 613171575 560 True 865.0 865 95.0180 2446 2988 1 chr6A.!!$R1 542
2 TraesCS6A01G408300 chr6A 613152902 613153512 610 True 471.5 826 98.4850 2446 2988 2 chr6A.!!$R4 542
3 TraesCS6A01G408300 chr6D 466907170 466910149 2979 True 1969.0 3345 89.3515 43 2988 2 chr6D.!!$R1 2945
4 TraesCS6A01G408300 chr6B 712102450 712104803 2353 False 2488.0 2488 86.1980 121 2465 1 chr6B.!!$F1 2344
5 TraesCS6A01G408300 chr7D 58829831 58830401 570 False 335.0 335 77.3910 1403 1973 1 chr7D.!!$F2 570
6 TraesCS6A01G408300 chr7D 31119665 31120226 561 False 318.0 318 77.3450 1431 1980 1 chr7D.!!$F1 549
7 TraesCS6A01G408300 chr7A 31592092 31592676 584 False 329.0 329 77.1190 1399 1980 1 chr7A.!!$F1 581
8 TraesCS6A01G408300 chr4A 675932638 675933180 542 False 322.0 322 77.5140 1431 1973 1 chr4A.!!$F1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
723 795 0.461548 TCATCTCACCTCATGTCGCC 59.538 55.0 0.0 0.0 0.0 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2205 2332 1.484444 GCACACCACCCTTCTCCTCT 61.484 60.0 0.0 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 6.430616 TCATGTCTATGAAAATGTTCACAGCA 59.569 34.615 0.00 2.25 46.40 4.41
102 103 4.926238 TGAAAATGTTCACAGCAAAAACGT 59.074 33.333 0.00 0.00 38.88 3.99
137 138 7.703058 TTAAATCAAATCAGGAAGGGTTCTC 57.297 36.000 0.00 0.00 0.00 2.87
149 150 1.295423 GGTTCTCGCTAGTTGGCCA 59.705 57.895 0.00 0.00 0.00 5.36
178 179 2.603110 CGTAACTATGCGCAATGACAGT 59.397 45.455 17.11 10.13 0.00 3.55
182 183 2.610833 ACTATGCGCAATGACAGTGATG 59.389 45.455 17.11 0.00 0.00 3.07
203 207 3.327757 TGCATGTTACCTCCCTATCCATC 59.672 47.826 0.00 0.00 0.00 3.51
248 252 9.978740 GATCAACCGATCTCCTCCTTACAAAGG 62.979 48.148 0.00 0.00 45.72 3.11
270 274 7.759489 AGGTTAATTTATGTCAGCTGTTGAA 57.241 32.000 14.67 3.88 37.61 2.69
272 276 7.665559 AGGTTAATTTATGTCAGCTGTTGAAGA 59.334 33.333 14.67 0.00 37.61 2.87
274 279 6.882610 AATTTATGTCAGCTGTTGAAGACA 57.117 33.333 14.67 9.91 44.16 3.41
281 286 4.741676 GTCAGCTGTTGAAGACATTTTTGG 59.258 41.667 14.67 0.00 37.61 3.28
302 307 9.927668 TTTTGGAAAAGATAAATCCTGAACATC 57.072 29.630 0.00 0.00 34.24 3.06
308 313 5.799213 AGATAAATCCTGAACATCCGGATC 58.201 41.667 15.88 5.09 36.56 3.36
309 314 2.533266 AATCCTGAACATCCGGATCG 57.467 50.000 15.88 12.88 36.56 3.69
310 315 1.414158 ATCCTGAACATCCGGATCGT 58.586 50.000 15.88 13.56 32.17 3.73
332 338 2.223572 GCCCATAGCAAATCGAAGGTTG 60.224 50.000 0.00 0.00 42.97 3.77
337 343 6.183360 CCCATAGCAAATCGAAGGTTGTTATT 60.183 38.462 11.12 0.00 31.34 1.40
339 345 8.070171 CCATAGCAAATCGAAGGTTGTTATTAG 58.930 37.037 11.12 5.50 31.34 1.73
364 370 1.990799 TAGTTGTTGCGAGGATGACG 58.009 50.000 0.00 0.00 0.00 4.35
398 404 1.098050 GCATGGCGAATTTGTCCTCT 58.902 50.000 0.00 0.00 0.00 3.69
403 409 5.708948 CATGGCGAATTTGTCCTCTTTTTA 58.291 37.500 0.00 0.00 0.00 1.52
405 411 6.339587 TGGCGAATTTGTCCTCTTTTTATT 57.660 33.333 0.00 0.00 0.00 1.40
408 414 8.361139 TGGCGAATTTGTCCTCTTTTTATTTTA 58.639 29.630 0.00 0.00 0.00 1.52
495 516 3.581770 TGATTTGTCATGGGCAAAATCCA 59.418 39.130 16.24 12.63 38.98 3.41
498 519 3.399440 TGTCATGGGCAAAATCCAAAC 57.601 42.857 0.00 0.00 37.87 2.93
515 536 4.642445 CAAACGTTTGGGACTTAAGGTT 57.358 40.909 29.25 0.00 34.90 3.50
516 537 5.001237 CAAACGTTTGGGACTTAAGGTTT 57.999 39.130 29.25 2.28 39.82 3.27
526 547 7.342769 TGGGACTTAAGGTTTTCTTTTCTTC 57.657 36.000 7.53 0.00 36.93 2.87
601 623 1.227793 GCTAGCTGTGGGGATGCTC 60.228 63.158 7.70 0.00 38.15 4.26
647 669 1.852626 CAGGTCCCTTCCCTTGGGT 60.853 63.158 5.51 0.00 44.84 4.51
648 670 1.072143 AGGTCCCTTCCCTTGGGTT 60.072 57.895 5.51 0.00 44.84 4.11
650 672 1.002502 GTCCCTTCCCTTGGGTTCG 60.003 63.158 5.51 0.00 44.84 3.95
651 673 1.462627 TCCCTTCCCTTGGGTTCGT 60.463 57.895 5.51 0.00 44.84 3.85
668 740 2.764128 TGGCCCCCGTCTCATCTC 60.764 66.667 0.00 0.00 0.00 2.75
683 755 2.913054 ATCTCATGGCGCCGAGTGTG 62.913 60.000 24.88 20.87 0.00 3.82
691 763 2.357517 GCCGAGTGTGGTCTGGTG 60.358 66.667 0.00 0.00 0.00 4.17
692 764 2.357517 CCGAGTGTGGTCTGGTGC 60.358 66.667 0.00 0.00 0.00 5.01
693 765 2.734723 CGAGTGTGGTCTGGTGCG 60.735 66.667 0.00 0.00 0.00 5.34
695 767 4.969196 AGTGTGGTCTGGTGCGCG 62.969 66.667 0.00 0.00 0.00 6.86
709 781 4.498520 CGCGCCACCGTCTCATCT 62.499 66.667 0.00 0.00 36.67 2.90
711 783 2.885113 CGCCACCGTCTCATCTCA 59.115 61.111 0.00 0.00 0.00 3.27
713 785 1.153549 GCCACCGTCTCATCTCACC 60.154 63.158 0.00 0.00 0.00 4.02
714 786 1.608717 GCCACCGTCTCATCTCACCT 61.609 60.000 0.00 0.00 0.00 4.00
716 788 1.177401 CACCGTCTCATCTCACCTCA 58.823 55.000 0.00 0.00 0.00 3.86
717 789 1.753649 CACCGTCTCATCTCACCTCAT 59.246 52.381 0.00 0.00 0.00 2.90
718 790 1.753649 ACCGTCTCATCTCACCTCATG 59.246 52.381 0.00 0.00 0.00 3.07
719 791 1.753649 CCGTCTCATCTCACCTCATGT 59.246 52.381 0.00 0.00 0.00 3.21
720 792 2.223688 CCGTCTCATCTCACCTCATGTC 60.224 54.545 0.00 0.00 0.00 3.06
721 793 2.540565 CGTCTCATCTCACCTCATGTCG 60.541 54.545 0.00 0.00 0.00 4.35
722 794 1.406898 TCTCATCTCACCTCATGTCGC 59.593 52.381 0.00 0.00 0.00 5.19
723 795 0.461548 TCATCTCACCTCATGTCGCC 59.538 55.000 0.00 0.00 0.00 5.54
724 796 0.873312 CATCTCACCTCATGTCGCCG 60.873 60.000 0.00 0.00 0.00 6.46
726 798 1.226802 CTCACCTCATGTCGCCGAG 60.227 63.158 0.00 0.00 0.00 4.63
727 799 1.938657 CTCACCTCATGTCGCCGAGT 61.939 60.000 0.00 0.00 0.00 4.18
728 800 1.807165 CACCTCATGTCGCCGAGTG 60.807 63.158 0.00 0.00 0.00 3.51
729 801 2.887568 CCTCATGTCGCCGAGTGC 60.888 66.667 0.00 0.00 0.00 4.40
777 854 5.348451 GCTGCGTGATTCCAAAACATAAATT 59.652 36.000 0.00 0.00 0.00 1.82
779 856 5.636965 TGCGTGATTCCAAAACATAAATTGG 59.363 36.000 0.00 0.00 46.03 3.16
851 932 1.858091 CATTATCGAAGACGCTGCCT 58.142 50.000 0.00 0.00 42.51 4.75
1059 1146 2.507992 CTCGCCGTGAGCTTCCTG 60.508 66.667 0.00 0.00 38.03 3.86
1060 1147 3.997064 CTCGCCGTGAGCTTCCTGG 62.997 68.421 0.00 0.00 38.03 4.45
1149 1239 3.056328 GACGGCAAGGACAAGGGC 61.056 66.667 0.00 0.00 0.00 5.19
1287 1377 2.095161 CACAGTCACCTCCTTCTACGTC 60.095 54.545 0.00 0.00 0.00 4.34
1288 1378 2.160205 CAGTCACCTCCTTCTACGTCA 58.840 52.381 0.00 0.00 0.00 4.35
1290 1380 2.161030 GTCACCTCCTTCTACGTCAGT 58.839 52.381 0.00 0.00 0.00 3.41
1291 1381 3.008813 AGTCACCTCCTTCTACGTCAGTA 59.991 47.826 0.00 0.00 0.00 2.74
1303 1393 5.055642 CTACGTCAGTAGTTTCATCCACA 57.944 43.478 0.00 0.00 43.99 4.17
1309 1399 6.166279 GTCAGTAGTTTCATCCACATCTTCA 58.834 40.000 0.00 0.00 0.00 3.02
1318 1408 5.434408 TCATCCACATCTTCATCTTCCTTG 58.566 41.667 0.00 0.00 0.00 3.61
1330 1420 4.104738 TCATCTTCCTTGTTCCTTCCTTGT 59.895 41.667 0.00 0.00 0.00 3.16
1346 1436 2.548875 CTTGTGCTCTGCTGGATCTAC 58.451 52.381 0.00 0.00 0.00 2.59
1347 1437 0.826715 TGTGCTCTGCTGGATCTACC 59.173 55.000 0.00 0.00 39.54 3.18
1349 1439 2.311463 GTGCTCTGCTGGATCTACCTA 58.689 52.381 0.00 0.00 39.86 3.08
1353 1443 4.410228 TGCTCTGCTGGATCTACCTATTTT 59.590 41.667 0.00 0.00 39.86 1.82
1394 1484 9.590828 AAAAAGAATGGAAAATGGAAAATGGAT 57.409 25.926 0.00 0.00 0.00 3.41
1395 1485 8.570068 AAAGAATGGAAAATGGAAAATGGATG 57.430 30.769 0.00 0.00 0.00 3.51
2061 2169 9.162793 CGAGATTTCATTGATTAATTTCTTCCG 57.837 33.333 0.00 0.00 0.00 4.30
2205 2332 9.173021 TGTTTAGAAGAAATGTGAAGAAAGTGA 57.827 29.630 0.00 0.00 0.00 3.41
2211 2338 6.229733 AGAAATGTGAAGAAAGTGAGAGGAG 58.770 40.000 0.00 0.00 0.00 3.69
2236 2363 0.953471 TGGTGTGCGTGCCAATAGTC 60.953 55.000 0.00 0.00 0.00 2.59
2834 3072 8.353684 TGATAGAGAGGTTCGATTAAATCACTC 58.646 37.037 0.00 0.00 0.00 3.51
2845 3083 9.893305 TTCGATTAAATCACTCTTTTCCTTTTC 57.107 29.630 0.00 0.00 0.00 2.29
2955 3204 2.744202 GTCCTTGCACGAATGAACTCAT 59.256 45.455 0.00 0.00 38.41 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 9.246670 TGAACATTTTCATAGACATGAGGAATT 57.753 29.630 0.00 0.00 42.11 2.17
65 66 8.680903 GTGAACATTTTCATAGACATGAGGAAT 58.319 33.333 0.00 0.00 43.72 3.01
90 91 9.530633 TTAATTTGGTTTATACGTTTTTGCTGT 57.469 25.926 0.00 0.00 0.00 4.40
137 138 3.918253 TTGGGCTGGCCAACTAGCG 62.918 63.158 29.42 0.00 40.78 4.26
149 150 1.865865 CGCATAGTTACGATTGGGCT 58.134 50.000 0.00 0.00 0.00 5.19
178 179 3.327757 GGATAGGGAGGTAACATGCATCA 59.672 47.826 0.00 0.00 41.41 3.07
182 183 3.617531 CGATGGATAGGGAGGTAACATGC 60.618 52.174 0.00 0.00 41.41 4.06
203 207 3.364889 TCCTATTTGACGCATAGGTCG 57.635 47.619 6.87 0.00 42.85 4.79
248 252 8.289618 TGTCTTCAACAGCTGACATAAATTAAC 58.710 33.333 23.35 6.31 34.94 2.01
252 256 7.458409 AATGTCTTCAACAGCTGACATAAAT 57.542 32.000 23.35 0.88 45.74 1.40
270 274 9.933723 CAGGATTTATCTTTTCCAAAAATGTCT 57.066 29.630 0.00 0.00 31.65 3.41
281 286 6.542370 TCCGGATGTTCAGGATTTATCTTTTC 59.458 38.462 0.00 0.00 35.82 2.29
300 305 1.975327 CTATGGGCACGATCCGGAT 59.025 57.895 19.21 19.21 0.00 4.18
302 307 2.357517 GCTATGGGCACGATCCGG 60.358 66.667 0.00 0.00 41.35 5.14
332 338 7.955864 CCTCGCAACAACTAAAGTTCTAATAAC 59.044 37.037 0.00 0.00 35.83 1.89
337 343 5.204409 TCCTCGCAACAACTAAAGTTCTA 57.796 39.130 0.00 0.00 35.83 2.10
339 345 4.451096 TCATCCTCGCAACAACTAAAGTTC 59.549 41.667 0.00 0.00 35.83 3.01
351 357 0.609151 TAAACCCGTCATCCTCGCAA 59.391 50.000 0.00 0.00 0.00 4.85
364 370 4.577283 TCGCCATGCTTACTAATTAAACCC 59.423 41.667 0.00 0.00 0.00 4.11
468 489 4.686191 TTGCCCATGACAAATCAAACTT 57.314 36.364 0.00 0.00 38.69 2.66
469 490 4.686191 TTTGCCCATGACAAATCAAACT 57.314 36.364 9.10 0.00 38.69 2.66
495 516 5.419788 AGAAAACCTTAAGTCCCAAACGTTT 59.580 36.000 7.96 7.96 0.00 3.60
498 519 5.509716 AAGAAAACCTTAAGTCCCAAACG 57.490 39.130 0.97 0.00 32.24 3.60
511 532 7.227049 TCAACAACAGAAGAAAAGAAAACCT 57.773 32.000 0.00 0.00 0.00 3.50
512 533 7.883229 TTCAACAACAGAAGAAAAGAAAACC 57.117 32.000 0.00 0.00 0.00 3.27
526 547 4.037690 CGGAAAGCTCTTTTCAACAACAG 58.962 43.478 2.00 0.00 45.70 3.16
539 561 5.231357 CACCAAAAAGTAAAACGGAAAGCTC 59.769 40.000 0.00 0.00 0.00 4.09
601 623 2.705821 AAGGACTCTGCTCCGCGAG 61.706 63.158 8.23 4.18 35.20 5.03
650 672 3.083997 AGATGAGACGGGGGCCAC 61.084 66.667 4.39 0.00 0.00 5.01
651 673 2.764128 GAGATGAGACGGGGGCCA 60.764 66.667 4.39 0.00 0.00 5.36
656 728 1.300465 CGCCATGAGATGAGACGGG 60.300 63.158 0.00 0.00 0.00 5.28
692 764 4.498520 AGATGAGACGGTGGCGCG 62.499 66.667 0.00 0.00 0.00 6.86
693 765 2.583593 GAGATGAGACGGTGGCGC 60.584 66.667 0.00 0.00 0.00 6.53
695 767 1.153549 GGTGAGATGAGACGGTGGC 60.154 63.158 0.00 0.00 0.00 5.01
696 768 0.457851 GAGGTGAGATGAGACGGTGG 59.542 60.000 0.00 0.00 0.00 4.61
697 769 1.177401 TGAGGTGAGATGAGACGGTG 58.823 55.000 0.00 0.00 0.00 4.94
698 770 1.753649 CATGAGGTGAGATGAGACGGT 59.246 52.381 0.00 0.00 0.00 4.83
699 771 1.753649 ACATGAGGTGAGATGAGACGG 59.246 52.381 0.00 0.00 0.00 4.79
700 772 2.540565 CGACATGAGGTGAGATGAGACG 60.541 54.545 0.00 0.00 0.00 4.18
701 773 2.797792 GCGACATGAGGTGAGATGAGAC 60.798 54.545 0.00 0.00 0.00 3.36
702 774 1.406898 GCGACATGAGGTGAGATGAGA 59.593 52.381 0.00 0.00 0.00 3.27
703 775 1.537776 GGCGACATGAGGTGAGATGAG 60.538 57.143 0.00 0.00 0.00 2.90
704 776 0.461548 GGCGACATGAGGTGAGATGA 59.538 55.000 0.00 0.00 0.00 2.92
705 777 0.873312 CGGCGACATGAGGTGAGATG 60.873 60.000 0.00 0.00 0.00 2.90
706 778 1.037579 TCGGCGACATGAGGTGAGAT 61.038 55.000 4.99 0.00 0.00 2.75
707 779 1.657751 CTCGGCGACATGAGGTGAGA 61.658 60.000 4.99 0.00 0.00 3.27
708 780 1.226802 CTCGGCGACATGAGGTGAG 60.227 63.158 4.99 0.00 0.00 3.51
709 781 1.977009 ACTCGGCGACATGAGGTGA 60.977 57.895 4.99 0.00 36.53 4.02
711 783 2.573869 CACTCGGCGACATGAGGT 59.426 61.111 4.99 0.00 36.53 3.85
724 796 3.627218 GTTATCGCCGCCGCACTC 61.627 66.667 0.00 0.00 34.03 3.51
732 804 4.891727 AGCTGGCCGTTATCGCCG 62.892 66.667 0.00 0.00 36.55 6.46
733 805 2.967615 GAGCTGGCCGTTATCGCC 60.968 66.667 0.00 0.00 35.54 5.54
734 806 2.967615 GGAGCTGGCCGTTATCGC 60.968 66.667 0.00 0.00 35.54 4.58
735 807 1.592669 CTGGAGCTGGCCGTTATCG 60.593 63.158 0.00 0.00 0.00 2.92
736 808 1.889573 GCTGGAGCTGGCCGTTATC 60.890 63.158 0.00 0.00 38.21 1.75
1149 1239 1.515020 CTCCAGCGAGAACTCCTGG 59.485 63.158 21.88 21.88 43.40 4.45
1269 1359 4.863851 CTACTGACGTAGAAGGAGGTGACT 60.864 50.000 0.00 0.00 44.77 3.41
1287 1377 7.046652 AGATGAAGATGTGGATGAAACTACTG 58.953 38.462 0.00 0.00 0.00 2.74
1288 1378 7.192852 AGATGAAGATGTGGATGAAACTACT 57.807 36.000 0.00 0.00 0.00 2.57
1290 1380 7.050377 GGAAGATGAAGATGTGGATGAAACTA 58.950 38.462 0.00 0.00 0.00 2.24
1291 1381 5.884792 GGAAGATGAAGATGTGGATGAAACT 59.115 40.000 0.00 0.00 0.00 2.66
1292 1382 5.884792 AGGAAGATGAAGATGTGGATGAAAC 59.115 40.000 0.00 0.00 0.00 2.78
1293 1383 6.070951 AGGAAGATGAAGATGTGGATGAAA 57.929 37.500 0.00 0.00 0.00 2.69
1294 1384 5.705397 AGGAAGATGAAGATGTGGATGAA 57.295 39.130 0.00 0.00 0.00 2.57
1302 1392 5.356470 GGAAGGAACAAGGAAGATGAAGATG 59.644 44.000 0.00 0.00 0.00 2.90
1303 1393 5.252630 AGGAAGGAACAAGGAAGATGAAGAT 59.747 40.000 0.00 0.00 0.00 2.40
1309 1399 4.401925 CACAAGGAAGGAACAAGGAAGAT 58.598 43.478 0.00 0.00 0.00 2.40
1318 1408 0.877743 GCAGAGCACAAGGAAGGAAC 59.122 55.000 0.00 0.00 0.00 3.62
1330 1420 2.755952 TAGGTAGATCCAGCAGAGCA 57.244 50.000 0.00 0.00 39.02 4.26
1353 1443 7.012894 TCCATTCTTTTTAGCAACGAGAGAAAA 59.987 33.333 0.00 0.00 0.00 2.29
1371 1461 7.608761 CACATCCATTTTCCATTTTCCATTCTT 59.391 33.333 0.00 0.00 0.00 2.52
1373 1463 6.880529 ACACATCCATTTTCCATTTTCCATTC 59.119 34.615 0.00 0.00 0.00 2.67
1394 1484 3.755526 AAGTCAGCTGCGCCACACA 62.756 57.895 9.47 0.00 0.00 3.72
1395 1485 2.959357 GAAGTCAGCTGCGCCACAC 61.959 63.158 9.47 0.10 0.00 3.82
2138 2262 9.796120 AAATGAATGTACACGAAGAAAAGAAAA 57.204 25.926 0.00 0.00 0.00 2.29
2139 2263 9.796120 AAAATGAATGTACACGAAGAAAAGAAA 57.204 25.926 0.00 0.00 0.00 2.52
2140 2264 9.796120 AAAAATGAATGTACACGAAGAAAAGAA 57.204 25.926 0.00 0.00 0.00 2.52
2141 2265 9.232082 CAAAAATGAATGTACACGAAGAAAAGA 57.768 29.630 0.00 0.00 0.00 2.52
2142 2266 7.998212 GCAAAAATGAATGTACACGAAGAAAAG 59.002 33.333 0.00 0.00 0.00 2.27
2205 2332 1.484444 GCACACCACCCTTCTCCTCT 61.484 60.000 0.00 0.00 0.00 3.69
2211 2338 3.660111 GCACGCACACCACCCTTC 61.660 66.667 0.00 0.00 0.00 3.46
2236 2363 6.506147 TGTCAACAGATCAACCAAAAGATTG 58.494 36.000 0.00 0.00 36.25 2.67
2697 2906 6.112734 TCACCACATAAGATGCGAACTATTT 58.887 36.000 0.00 0.00 0.00 1.40
2708 2945 4.323792 CCTGGTCTGTTCACCACATAAGAT 60.324 45.833 0.00 0.00 41.84 2.40
2834 3072 6.803807 GTCGGATCATGAAAGAAAAGGAAAAG 59.196 38.462 0.00 0.00 0.00 2.27
2845 3083 4.248859 ACAGAAGTGTCGGATCATGAAAG 58.751 43.478 0.00 0.00 26.76 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.