Multiple sequence alignment - TraesCS6A01G407800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G407800 chr6A 100.000 5197 0 0 1 5197 612571554 612566358 0.000000e+00 9598.0
1 TraesCS6A01G407800 chr6A 93.279 2351 97 18 1110 3410 21312616 21310277 0.000000e+00 3410.0
2 TraesCS6A01G407800 chr6A 93.131 2271 122 19 1107 3356 26822352 26820095 0.000000e+00 3299.0
3 TraesCS6A01G407800 chr6A 92.319 1406 95 8 2013 3410 609029311 609030711 0.000000e+00 1986.0
4 TraesCS6A01G407800 chr6A 92.070 1425 74 20 2013 3409 24203167 24204580 0.000000e+00 1969.0
5 TraesCS6A01G407800 chr6A 92.168 1264 61 11 2176 3405 579153599 579154858 0.000000e+00 1751.0
6 TraesCS6A01G407800 chr6A 89.939 984 46 20 172 1110 613079553 613080528 0.000000e+00 1219.0
7 TraesCS6A01G407800 chr6A 91.084 886 73 4 3403 4288 613080521 613081400 0.000000e+00 1194.0
8 TraesCS6A01G407800 chr6A 81.375 902 129 28 164 1036 573636307 573637198 0.000000e+00 699.0
9 TraesCS6A01G407800 chr6A 80.842 903 134 29 164 1036 574222254 574221361 0.000000e+00 673.0
10 TraesCS6A01G407800 chr6A 87.065 603 47 13 2840 3414 9466386 9465787 0.000000e+00 652.0
11 TraesCS6A01G407800 chr6A 90.505 495 37 6 2927 3414 5556400 5555909 0.000000e+00 645.0
12 TraesCS6A01G407800 chr6A 89.474 399 42 0 3890 4288 613038420 613038818 6.010000e-139 505.0
13 TraesCS6A01G407800 chr6A 72.767 694 153 25 319 987 613094674 613095356 8.820000e-48 202.0
14 TraesCS6A01G407800 chr7A 93.643 2344 100 14 1109 3407 69232923 69230584 0.000000e+00 3458.0
15 TraesCS6A01G407800 chr7A 93.382 2342 116 5 1109 3414 63320230 63322568 0.000000e+00 3430.0
16 TraesCS6A01G407800 chr7A 93.174 2344 108 18 1109 3407 686008517 686010853 0.000000e+00 3395.0
17 TraesCS6A01G407800 chr7A 92.794 1235 55 11 2207 3411 734547681 734548911 0.000000e+00 1757.0
18 TraesCS6A01G407800 chr7A 91.702 1193 60 12 2262 3419 668038504 668039692 0.000000e+00 1618.0
19 TraesCS6A01G407800 chr7A 90.317 568 28 7 2867 3407 724903185 724902618 0.000000e+00 719.0
20 TraesCS6A01G407800 chr2A 93.152 2351 112 9 1107 3409 658903667 658906016 0.000000e+00 3404.0
21 TraesCS6A01G407800 chr2A 91.869 2349 121 16 1114 3410 16288468 16290798 0.000000e+00 3216.0
22 TraesCS6A01G407800 chr2A 100.000 31 0 0 4199 4229 18024144 18024174 2.020000e-04 58.4
23 TraesCS6A01G407800 chr3A 92.827 2356 111 24 1107 3410 477982596 477984945 0.000000e+00 3362.0
24 TraesCS6A01G407800 chr3A 87.191 445 47 6 2974 3410 720476675 720476233 1.000000e-136 497.0
25 TraesCS6A01G407800 chr4A 93.043 2343 91 19 1109 3413 603416809 603414501 0.000000e+00 3358.0
26 TraesCS6A01G407800 chr4A 90.966 1450 71 18 2013 3407 512535440 512536884 0.000000e+00 1897.0
27 TraesCS6A01G407800 chr4A 91.703 916 69 4 1107 2015 660689270 660688355 0.000000e+00 1264.0
28 TraesCS6A01G407800 chr4A 90.399 802 63 10 1107 1896 688887736 688886937 0.000000e+00 1042.0
29 TraesCS6A01G407800 chr4A 100.000 30 0 0 4201 4230 504200729 504200758 7.270000e-04 56.5
30 TraesCS6A01G407800 chr4A 96.970 33 1 0 4201 4233 667788172 667788140 7.270000e-04 56.5
31 TraesCS6A01G407800 chr2B 91.028 1449 87 18 1995 3409 30137583 30139022 0.000000e+00 1916.0
32 TraesCS6A01G407800 chrUn 89.591 1441 100 17 2013 3407 299905086 299906522 0.000000e+00 1784.0
33 TraesCS6A01G407800 chrUn 87.961 515 33 11 2924 3410 368714603 368715116 9.700000e-162 580.0
34 TraesCS6A01G407800 chrUn 86.248 509 36 16 2932 3410 47878686 47878182 5.960000e-144 521.0
35 TraesCS6A01G407800 chrUn 87.220 446 41 10 2971 3407 47837890 47837452 1.300000e-135 494.0
36 TraesCS6A01G407800 chrUn 88.981 363 29 6 3060 3414 51404646 51404287 6.180000e-119 438.0
37 TraesCS6A01G407800 chrUn 88.981 363 29 6 3060 3414 390752508 390752149 6.180000e-119 438.0
38 TraesCS6A01G407800 chrUn 88.430 363 31 6 3060 3414 398070874 398070515 1.340000e-115 427.0
39 TraesCS6A01G407800 chrUn 93.143 175 10 2 1 173 83928578 83928404 6.680000e-64 255.0
40 TraesCS6A01G407800 chrUn 92.899 169 11 1 1 168 60959837 60959669 1.450000e-60 244.0
41 TraesCS6A01G407800 chrUn 91.228 171 13 1 1 169 264394155 264394325 1.130000e-56 231.0
42 TraesCS6A01G407800 chrUn 90.854 164 13 1 4 165 429974950 429974787 8.760000e-53 219.0
43 TraesCS6A01G407800 chrUn 90.244 164 15 1 1 164 87720764 87720926 4.080000e-51 213.0
44 TraesCS6A01G407800 chrUn 89.474 171 14 3 2 168 319943007 319943177 4.080000e-51 213.0
45 TraesCS6A01G407800 chrUn 89.412 170 14 3 2 167 366048618 366048787 1.470000e-50 211.0
46 TraesCS6A01G407800 chr1A 89.576 1439 90 25 2013 3403 439729776 439728350 0.000000e+00 1772.0
47 TraesCS6A01G407800 chr1A 89.426 1447 96 25 2013 3407 572569653 572568212 0.000000e+00 1772.0
48 TraesCS6A01G407800 chr1A 88.690 1450 103 23 2013 3410 550785157 550786597 0.000000e+00 1712.0
49 TraesCS6A01G407800 chr1A 88.382 1446 111 24 2013 3411 99496194 99494759 0.000000e+00 1687.0
50 TraesCS6A01G407800 chr1A 100.000 30 0 0 4200 4229 62018579 62018550 7.270000e-04 56.5
51 TraesCS6A01G407800 chr1A 100.000 29 0 0 4202 4230 499190634 499190606 3.000000e-03 54.7
52 TraesCS6A01G407800 chr5B 90.739 1015 60 13 2409 3414 375645913 375646902 0.000000e+00 1323.0
53 TraesCS6A01G407800 chr5B 92.206 911 69 2 1107 2015 54845486 54846396 0.000000e+00 1288.0
54 TraesCS6A01G407800 chr5B 92.000 175 12 2 1 174 586917840 586917667 1.450000e-60 244.0
55 TraesCS6A01G407800 chr3B 92.670 914 65 2 1104 2015 10336261 10335348 0.000000e+00 1315.0
56 TraesCS6A01G407800 chr3B 91.597 357 24 6 3060 3412 20069751 20069397 6.050000e-134 488.0
57 TraesCS6A01G407800 chr3B 92.571 175 11 2 1 173 20422503 20422329 3.110000e-62 250.0
58 TraesCS6A01G407800 chr6B 92.519 909 64 4 1109 2015 657251197 657252103 0.000000e+00 1299.0
59 TraesCS6A01G407800 chr6B 90.971 886 76 3 3403 4288 711725052 711725933 0.000000e+00 1190.0
60 TraesCS6A01G407800 chr6B 89.275 979 53 22 176 1110 711724089 711725059 0.000000e+00 1179.0
61 TraesCS6A01G407800 chr6B 88.310 864 55 16 292 1110 711655466 711654604 0.000000e+00 994.0
62 TraesCS6A01G407800 chr6B 92.754 621 45 0 3742 4362 711636617 711635997 0.000000e+00 898.0
63 TraesCS6A01G407800 chr6B 84.025 795 104 9 3403 4197 710317969 710317198 0.000000e+00 743.0
64 TraesCS6A01G407800 chr6B 81.215 905 127 33 164 1036 645653480 645654373 0.000000e+00 689.0
65 TraesCS6A01G407800 chr6B 80.994 905 130 31 164 1036 646010196 646009302 0.000000e+00 680.0
66 TraesCS6A01G407800 chr6B 94.169 343 17 3 3403 3745 711654611 711654272 2.140000e-143 520.0
67 TraesCS6A01G407800 chr6B 90.708 226 10 3 4775 4999 711633779 711633564 1.830000e-74 291.0
68 TraesCS6A01G407800 chr6B 79.683 315 48 11 3403 3703 645654465 645654777 4.080000e-51 213.0
69 TraesCS6A01G407800 chr6B 73.047 653 140 25 360 987 711763264 711763905 1.140000e-46 198.0
70 TraesCS6A01G407800 chr7B 91.877 911 72 2 1107 2015 79398858 79397948 0.000000e+00 1271.0
71 TraesCS6A01G407800 chr7B 91.859 909 72 2 1109 2015 580156158 580157066 0.000000e+00 1267.0
72 TraesCS6A01G407800 chr7B 90.777 759 39 13 2682 3410 479235410 479234653 0.000000e+00 985.0
73 TraesCS6A01G407800 chr4B 91.776 912 63 9 1107 2015 626473013 626473915 0.000000e+00 1258.0
74 TraesCS6A01G407800 chr4B 91.475 915 71 4 1107 2015 419821825 419820912 0.000000e+00 1251.0
75 TraesCS6A01G407800 chr4B 87.748 604 43 11 2836 3410 28505994 28506595 0.000000e+00 676.0
76 TraesCS6A01G407800 chr1B 90.293 886 81 4 3403 4288 92325728 92324848 0.000000e+00 1155.0
77 TraesCS6A01G407800 chr1B 88.855 978 55 21 176 1110 92326687 92325721 0.000000e+00 1153.0
78 TraesCS6A01G407800 chr1B 100.000 29 0 0 4201 4229 442949244 442949272 3.000000e-03 54.7
79 TraesCS6A01G407800 chr1B 100.000 29 0 0 4201 4229 579558620 579558648 3.000000e-03 54.7
80 TraesCS6A01G407800 chr6D 84.151 795 103 10 3403 4197 465346869 465346098 0.000000e+00 749.0
81 TraesCS6A01G407800 chr6D 82.200 809 115 16 255 1038 462026490 462025686 0.000000e+00 669.0
82 TraesCS6A01G407800 chr6D 81.437 835 126 14 226 1038 465347787 465346960 0.000000e+00 656.0
83 TraesCS6A01G407800 chr6D 82.103 799 112 19 264 1036 461820156 461819363 0.000000e+00 654.0
84 TraesCS6A01G407800 chr6D 78.805 887 148 24 179 1036 110868467 110869342 1.260000e-155 560.0
85 TraesCS6A01G407800 chr6D 92.899 169 11 1 1 168 464465835 464466003 1.450000e-60 244.0
86 TraesCS6A01G407800 chr6D 92.262 168 12 1 3 170 450365713 450365547 2.420000e-58 237.0
87 TraesCS6A01G407800 chr6D 80.192 313 48 11 3403 3703 428961249 428961559 6.770000e-54 222.0
88 TraesCS6A01G407800 chr6D 86.885 61 4 4 4437 4495 465345965 465345907 1.210000e-06 65.8
89 TraesCS6A01G407800 chr6D 100.000 28 0 0 4202 4229 103006031 103006058 9.000000e-03 52.8
90 TraesCS6A01G407800 chr3D 93.064 173 11 1 1 172 577502083 577502255 8.640000e-63 252.0
91 TraesCS6A01G407800 chr3D 93.452 168 11 0 1 168 5040047 5039880 3.110000e-62 250.0
92 TraesCS6A01G407800 chr3D 93.023 172 10 2 1 170 582706219 582706390 3.110000e-62 250.0
93 TraesCS6A01G407800 chr3D 78.358 402 55 19 739 1110 464051507 464051906 1.130000e-56 231.0
94 TraesCS6A01G407800 chr3D 100.000 29 0 0 4201 4229 389633158 389633130 3.000000e-03 54.7
95 TraesCS6A01G407800 chr1D 93.452 168 10 1 1 167 404241685 404241852 1.120000e-61 248.0
96 TraesCS6A01G407800 chr2D 92.486 173 11 2 1 172 53792195 53792366 4.020000e-61 246.0
97 TraesCS6A01G407800 chr5D 92.899 169 10 2 1 168 530487886 530487719 1.450000e-60 244.0
98 TraesCS6A01G407800 chr5D 92.857 168 9 3 1 166 371278907 371278741 1.870000e-59 241.0
99 TraesCS6A01G407800 chr5D 100.000 28 0 0 4202 4229 335063672 335063699 9.000000e-03 52.8
100 TraesCS6A01G407800 chr4D 92.308 169 10 3 4 170 8274581 8274414 2.420000e-58 237.0
101 TraesCS6A01G407800 chr4D 92.262 168 12 1 1 167 47728874 47728707 2.420000e-58 237.0
102 TraesCS6A01G407800 chr4D 92.073 164 12 1 4 167 6226790 6226628 4.050000e-56 230.0
103 TraesCS6A01G407800 chr4D 100.000 30 0 0 4201 4230 92198025 92198054 7.270000e-04 56.5
104 TraesCS6A01G407800 chr7D 96.875 32 1 0 4200 4231 13695985 13696016 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G407800 chr6A 612566358 612571554 5196 True 9598.000000 9598 100.000000 1 5197 1 chr6A.!!$R6 5196
1 TraesCS6A01G407800 chr6A 21310277 21312616 2339 True 3410.000000 3410 93.279000 1110 3410 1 chr6A.!!$R3 2300
2 TraesCS6A01G407800 chr6A 26820095 26822352 2257 True 3299.000000 3299 93.131000 1107 3356 1 chr6A.!!$R4 2249
3 TraesCS6A01G407800 chr6A 609029311 609030711 1400 False 1986.000000 1986 92.319000 2013 3410 1 chr6A.!!$F4 1397
4 TraesCS6A01G407800 chr6A 24203167 24204580 1413 False 1969.000000 1969 92.070000 2013 3409 1 chr6A.!!$F1 1396
5 TraesCS6A01G407800 chr6A 579153599 579154858 1259 False 1751.000000 1751 92.168000 2176 3405 1 chr6A.!!$F3 1229
6 TraesCS6A01G407800 chr6A 613079553 613081400 1847 False 1206.500000 1219 90.511500 172 4288 2 chr6A.!!$F7 4116
7 TraesCS6A01G407800 chr6A 573636307 573637198 891 False 699.000000 699 81.375000 164 1036 1 chr6A.!!$F2 872
8 TraesCS6A01G407800 chr6A 574221361 574222254 893 True 673.000000 673 80.842000 164 1036 1 chr6A.!!$R5 872
9 TraesCS6A01G407800 chr6A 9465787 9466386 599 True 652.000000 652 87.065000 2840 3414 1 chr6A.!!$R2 574
10 TraesCS6A01G407800 chr6A 613094674 613095356 682 False 202.000000 202 72.767000 319 987 1 chr6A.!!$F6 668
11 TraesCS6A01G407800 chr7A 69230584 69232923 2339 True 3458.000000 3458 93.643000 1109 3407 1 chr7A.!!$R1 2298
12 TraesCS6A01G407800 chr7A 63320230 63322568 2338 False 3430.000000 3430 93.382000 1109 3414 1 chr7A.!!$F1 2305
13 TraesCS6A01G407800 chr7A 686008517 686010853 2336 False 3395.000000 3395 93.174000 1109 3407 1 chr7A.!!$F3 2298
14 TraesCS6A01G407800 chr7A 734547681 734548911 1230 False 1757.000000 1757 92.794000 2207 3411 1 chr7A.!!$F4 1204
15 TraesCS6A01G407800 chr7A 668038504 668039692 1188 False 1618.000000 1618 91.702000 2262 3419 1 chr7A.!!$F2 1157
16 TraesCS6A01G407800 chr7A 724902618 724903185 567 True 719.000000 719 90.317000 2867 3407 1 chr7A.!!$R2 540
17 TraesCS6A01G407800 chr2A 658903667 658906016 2349 False 3404.000000 3404 93.152000 1107 3409 1 chr2A.!!$F3 2302
18 TraesCS6A01G407800 chr2A 16288468 16290798 2330 False 3216.000000 3216 91.869000 1114 3410 1 chr2A.!!$F1 2296
19 TraesCS6A01G407800 chr3A 477982596 477984945 2349 False 3362.000000 3362 92.827000 1107 3410 1 chr3A.!!$F1 2303
20 TraesCS6A01G407800 chr4A 603414501 603416809 2308 True 3358.000000 3358 93.043000 1109 3413 1 chr4A.!!$R1 2304
21 TraesCS6A01G407800 chr4A 512535440 512536884 1444 False 1897.000000 1897 90.966000 2013 3407 1 chr4A.!!$F2 1394
22 TraesCS6A01G407800 chr4A 660688355 660689270 915 True 1264.000000 1264 91.703000 1107 2015 1 chr4A.!!$R2 908
23 TraesCS6A01G407800 chr4A 688886937 688887736 799 True 1042.000000 1042 90.399000 1107 1896 1 chr4A.!!$R4 789
24 TraesCS6A01G407800 chr2B 30137583 30139022 1439 False 1916.000000 1916 91.028000 1995 3409 1 chr2B.!!$F1 1414
25 TraesCS6A01G407800 chrUn 299905086 299906522 1436 False 1784.000000 1784 89.591000 2013 3407 1 chrUn.!!$F3 1394
26 TraesCS6A01G407800 chrUn 368714603 368715116 513 False 580.000000 580 87.961000 2924 3410 1 chrUn.!!$F6 486
27 TraesCS6A01G407800 chrUn 47878182 47878686 504 True 521.000000 521 86.248000 2932 3410 1 chrUn.!!$R2 478
28 TraesCS6A01G407800 chr1A 439728350 439729776 1426 True 1772.000000 1772 89.576000 2013 3403 1 chr1A.!!$R3 1390
29 TraesCS6A01G407800 chr1A 572568212 572569653 1441 True 1772.000000 1772 89.426000 2013 3407 1 chr1A.!!$R5 1394
30 TraesCS6A01G407800 chr1A 550785157 550786597 1440 False 1712.000000 1712 88.690000 2013 3410 1 chr1A.!!$F1 1397
31 TraesCS6A01G407800 chr1A 99494759 99496194 1435 True 1687.000000 1687 88.382000 2013 3411 1 chr1A.!!$R2 1398
32 TraesCS6A01G407800 chr5B 375645913 375646902 989 False 1323.000000 1323 90.739000 2409 3414 1 chr5B.!!$F2 1005
33 TraesCS6A01G407800 chr5B 54845486 54846396 910 False 1288.000000 1288 92.206000 1107 2015 1 chr5B.!!$F1 908
34 TraesCS6A01G407800 chr3B 10335348 10336261 913 True 1315.000000 1315 92.670000 1104 2015 1 chr3B.!!$R1 911
35 TraesCS6A01G407800 chr6B 657251197 657252103 906 False 1299.000000 1299 92.519000 1109 2015 1 chr6B.!!$F1 906
36 TraesCS6A01G407800 chr6B 711724089 711725933 1844 False 1184.500000 1190 90.123000 176 4288 2 chr6B.!!$F4 4112
37 TraesCS6A01G407800 chr6B 711654272 711655466 1194 True 757.000000 994 91.239500 292 3745 2 chr6B.!!$R4 3453
38 TraesCS6A01G407800 chr6B 710317198 710317969 771 True 743.000000 743 84.025000 3403 4197 1 chr6B.!!$R2 794
39 TraesCS6A01G407800 chr6B 646009302 646010196 894 True 680.000000 680 80.994000 164 1036 1 chr6B.!!$R1 872
40 TraesCS6A01G407800 chr6B 711633564 711636617 3053 True 594.500000 898 91.731000 3742 4999 2 chr6B.!!$R3 1257
41 TraesCS6A01G407800 chr6B 645653480 645654777 1297 False 451.000000 689 80.449000 164 3703 2 chr6B.!!$F3 3539
42 TraesCS6A01G407800 chr7B 79397948 79398858 910 True 1271.000000 1271 91.877000 1107 2015 1 chr7B.!!$R1 908
43 TraesCS6A01G407800 chr7B 580156158 580157066 908 False 1267.000000 1267 91.859000 1109 2015 1 chr7B.!!$F1 906
44 TraesCS6A01G407800 chr7B 479234653 479235410 757 True 985.000000 985 90.777000 2682 3410 1 chr7B.!!$R2 728
45 TraesCS6A01G407800 chr4B 626473013 626473915 902 False 1258.000000 1258 91.776000 1107 2015 1 chr4B.!!$F2 908
46 TraesCS6A01G407800 chr4B 419820912 419821825 913 True 1251.000000 1251 91.475000 1107 2015 1 chr4B.!!$R1 908
47 TraesCS6A01G407800 chr4B 28505994 28506595 601 False 676.000000 676 87.748000 2836 3410 1 chr4B.!!$F1 574
48 TraesCS6A01G407800 chr1B 92324848 92326687 1839 True 1154.000000 1155 89.574000 176 4288 2 chr1B.!!$R1 4112
49 TraesCS6A01G407800 chr6D 462025686 462026490 804 True 669.000000 669 82.200000 255 1038 1 chr6D.!!$R3 783
50 TraesCS6A01G407800 chr6D 461819363 461820156 793 True 654.000000 654 82.103000 264 1036 1 chr6D.!!$R2 772
51 TraesCS6A01G407800 chr6D 110868467 110869342 875 False 560.000000 560 78.805000 179 1036 1 chr6D.!!$F2 857
52 TraesCS6A01G407800 chr6D 465345907 465347787 1880 True 490.266667 749 84.157667 226 4495 3 chr6D.!!$R4 4269

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
82 83 0.097674 CGTCGTTAGGTGGTCTACGG 59.902 60.0 0.00 0.00 0.00 4.02 F
1640 1754 0.038159 CGGTGTTCCTCTTCTTCGCT 60.038 55.0 0.00 0.00 0.00 4.93 F
1826 1940 0.040067 CCTTCTTCGCCAACTTGTGC 60.040 55.0 0.00 0.00 0.00 4.57 F
3678 3917 1.072266 ATACTCCAAGGTGCACCCAA 58.928 50.0 32.29 14.02 36.42 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1864 1978 0.535335 GGAGACATACAAGCCGGACA 59.465 55.0 5.05 0.0 0.00 4.02 R
3474 3711 0.456824 CCTCTCCATGACACACGTCG 60.457 60.0 0.00 0.0 45.80 5.12 R
3711 3950 2.961526 TGGAGAATCGGTACAAGAGC 57.038 50.0 0.00 0.0 34.37 4.09 R
4828 6872 0.096976 CTAAGATTGTGCCGCGTTGG 59.903 55.0 4.92 0.0 42.50 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.278857 CGACTCCGGCGATGGAAG 60.279 66.667 9.30 0.00 37.64 3.46
18 19 2.107141 GACTCCGGCGATGGAAGG 59.893 66.667 9.30 0.00 37.64 3.46
19 20 3.447025 GACTCCGGCGATGGAAGGG 62.447 68.421 9.30 0.00 37.64 3.95
20 21 4.918201 CTCCGGCGATGGAAGGGC 62.918 72.222 9.30 0.00 37.64 5.19
24 25 2.974698 GGCGATGGAAGGGCGATG 60.975 66.667 0.00 0.00 0.00 3.84
25 26 2.108976 GCGATGGAAGGGCGATGA 59.891 61.111 0.00 0.00 0.00 2.92
26 27 2.247437 GCGATGGAAGGGCGATGAC 61.247 63.158 0.00 0.00 0.00 3.06
27 28 1.951130 CGATGGAAGGGCGATGACG 60.951 63.158 0.00 0.00 42.93 4.35
28 29 1.595382 GATGGAAGGGCGATGACGG 60.595 63.158 0.00 0.00 40.15 4.79
50 51 3.858989 GCGCCTTCAGCTCGCTTC 61.859 66.667 9.28 0.00 44.79 3.86
51 52 2.433145 CGCCTTCAGCTCGCTTCA 60.433 61.111 0.00 0.00 40.39 3.02
52 53 2.451167 CGCCTTCAGCTCGCTTCAG 61.451 63.158 0.00 0.00 40.39 3.02
53 54 1.375268 GCCTTCAGCTCGCTTCAGT 60.375 57.895 0.00 0.00 38.99 3.41
54 55 0.952984 GCCTTCAGCTCGCTTCAGTT 60.953 55.000 0.00 0.00 38.99 3.16
55 56 1.517242 CCTTCAGCTCGCTTCAGTTT 58.483 50.000 0.00 0.00 0.00 2.66
56 57 1.876156 CCTTCAGCTCGCTTCAGTTTT 59.124 47.619 0.00 0.00 0.00 2.43
57 58 2.291741 CCTTCAGCTCGCTTCAGTTTTT 59.708 45.455 0.00 0.00 0.00 1.94
58 59 3.294943 CTTCAGCTCGCTTCAGTTTTTG 58.705 45.455 0.00 0.00 0.00 2.44
59 60 2.288666 TCAGCTCGCTTCAGTTTTTGT 58.711 42.857 0.00 0.00 0.00 2.83
60 61 3.462982 TCAGCTCGCTTCAGTTTTTGTA 58.537 40.909 0.00 0.00 0.00 2.41
61 62 3.494626 TCAGCTCGCTTCAGTTTTTGTAG 59.505 43.478 0.00 0.00 0.00 2.74
62 63 3.248602 CAGCTCGCTTCAGTTTTTGTAGT 59.751 43.478 0.00 0.00 0.00 2.73
63 64 3.495001 AGCTCGCTTCAGTTTTTGTAGTC 59.505 43.478 0.00 0.00 0.00 2.59
64 65 3.661936 GCTCGCTTCAGTTTTTGTAGTCG 60.662 47.826 0.00 0.00 0.00 4.18
65 66 3.450578 TCGCTTCAGTTTTTGTAGTCGT 58.549 40.909 0.00 0.00 31.25 4.34
66 67 3.488310 TCGCTTCAGTTTTTGTAGTCGTC 59.512 43.478 0.00 0.00 31.25 4.20
67 68 3.658342 CGCTTCAGTTTTTGTAGTCGTCG 60.658 47.826 0.00 0.00 0.00 5.12
68 69 3.244579 GCTTCAGTTTTTGTAGTCGTCGT 59.755 43.478 0.00 0.00 0.00 4.34
69 70 4.260091 GCTTCAGTTTTTGTAGTCGTCGTT 60.260 41.667 0.00 0.00 0.00 3.85
70 71 5.051508 GCTTCAGTTTTTGTAGTCGTCGTTA 60.052 40.000 0.00 0.00 0.00 3.18
71 72 6.500775 TTCAGTTTTTGTAGTCGTCGTTAG 57.499 37.500 0.00 0.00 0.00 2.34
72 73 4.977963 TCAGTTTTTGTAGTCGTCGTTAGG 59.022 41.667 0.00 0.00 0.00 2.69
73 74 4.741676 CAGTTTTTGTAGTCGTCGTTAGGT 59.258 41.667 0.00 0.00 0.00 3.08
74 75 4.741676 AGTTTTTGTAGTCGTCGTTAGGTG 59.258 41.667 0.00 0.00 0.00 4.00
75 76 2.995466 TTGTAGTCGTCGTTAGGTGG 57.005 50.000 0.00 0.00 0.00 4.61
76 77 1.896220 TGTAGTCGTCGTTAGGTGGT 58.104 50.000 0.00 0.00 0.00 4.16
77 78 1.806542 TGTAGTCGTCGTTAGGTGGTC 59.193 52.381 0.00 0.00 0.00 4.02
78 79 2.079925 GTAGTCGTCGTTAGGTGGTCT 58.920 52.381 0.00 0.00 0.00 3.85
79 80 2.479566 AGTCGTCGTTAGGTGGTCTA 57.520 50.000 0.00 0.00 0.00 2.59
80 81 2.079925 AGTCGTCGTTAGGTGGTCTAC 58.920 52.381 0.00 0.00 0.00 2.59
81 82 1.078709 TCGTCGTTAGGTGGTCTACG 58.921 55.000 0.00 0.00 0.00 3.51
82 83 0.097674 CGTCGTTAGGTGGTCTACGG 59.902 60.000 0.00 0.00 0.00 4.02
83 84 1.453155 GTCGTTAGGTGGTCTACGGA 58.547 55.000 0.00 0.00 0.00 4.69
84 85 2.019984 GTCGTTAGGTGGTCTACGGAT 58.980 52.381 0.00 0.00 0.00 4.18
85 86 2.032675 GTCGTTAGGTGGTCTACGGATC 59.967 54.545 0.00 0.00 0.00 3.36
86 87 2.092753 TCGTTAGGTGGTCTACGGATCT 60.093 50.000 0.00 0.00 0.00 2.75
87 88 2.033049 CGTTAGGTGGTCTACGGATCTG 59.967 54.545 0.00 0.00 0.00 2.90
88 89 2.359981 TAGGTGGTCTACGGATCTGG 57.640 55.000 6.47 0.00 0.00 3.86
89 90 0.629596 AGGTGGTCTACGGATCTGGA 59.370 55.000 6.47 0.00 0.00 3.86
90 91 1.218196 AGGTGGTCTACGGATCTGGAT 59.782 52.381 6.47 0.00 0.00 3.41
91 92 1.341531 GGTGGTCTACGGATCTGGATG 59.658 57.143 6.47 0.00 0.00 3.51
92 93 2.032620 GTGGTCTACGGATCTGGATGT 58.967 52.381 6.47 0.00 0.00 3.06
93 94 3.220110 GTGGTCTACGGATCTGGATGTA 58.780 50.000 6.47 0.00 0.00 2.29
94 95 3.635373 GTGGTCTACGGATCTGGATGTAA 59.365 47.826 6.47 0.00 0.00 2.41
95 96 4.281182 GTGGTCTACGGATCTGGATGTAAT 59.719 45.833 6.47 0.00 0.00 1.89
96 97 4.899457 TGGTCTACGGATCTGGATGTAATT 59.101 41.667 6.47 0.00 0.00 1.40
97 98 5.365605 TGGTCTACGGATCTGGATGTAATTT 59.634 40.000 6.47 0.00 0.00 1.82
98 99 6.126883 TGGTCTACGGATCTGGATGTAATTTT 60.127 38.462 6.47 0.00 0.00 1.82
99 100 6.766467 GGTCTACGGATCTGGATGTAATTTTT 59.234 38.462 6.47 0.00 0.00 1.94
100 101 7.929785 GGTCTACGGATCTGGATGTAATTTTTA 59.070 37.037 6.47 0.00 0.00 1.52
101 102 9.490379 GTCTACGGATCTGGATGTAATTTTTAT 57.510 33.333 6.47 0.00 0.00 1.40
120 121 8.983307 TTTTTATTTTTGGTGTTCGTTGTACT 57.017 26.923 0.00 0.00 0.00 2.73
121 122 7.972623 TTTATTTTTGGTGTTCGTTGTACTG 57.027 32.000 0.00 0.00 0.00 2.74
122 123 3.408288 TTTTGGTGTTCGTTGTACTGC 57.592 42.857 0.00 0.00 0.00 4.40
123 124 1.301423 TTGGTGTTCGTTGTACTGCC 58.699 50.000 0.00 0.00 0.00 4.85
124 125 0.178301 TGGTGTTCGTTGTACTGCCA 59.822 50.000 0.00 0.00 0.00 4.92
125 126 1.202710 TGGTGTTCGTTGTACTGCCAT 60.203 47.619 0.00 0.00 0.00 4.40
126 127 1.196808 GGTGTTCGTTGTACTGCCATG 59.803 52.381 0.00 0.00 0.00 3.66
127 128 2.139917 GTGTTCGTTGTACTGCCATGA 58.860 47.619 0.00 0.00 0.00 3.07
128 129 2.742053 GTGTTCGTTGTACTGCCATGAT 59.258 45.455 0.00 0.00 0.00 2.45
129 130 3.188460 GTGTTCGTTGTACTGCCATGATT 59.812 43.478 0.00 0.00 0.00 2.57
130 131 3.188254 TGTTCGTTGTACTGCCATGATTG 59.812 43.478 0.00 0.00 0.00 2.67
131 132 3.326836 TCGTTGTACTGCCATGATTGA 57.673 42.857 0.00 0.00 0.00 2.57
132 133 3.669536 TCGTTGTACTGCCATGATTGAA 58.330 40.909 0.00 0.00 0.00 2.69
133 134 3.684305 TCGTTGTACTGCCATGATTGAAG 59.316 43.478 0.00 0.00 0.00 3.02
134 135 3.684305 CGTTGTACTGCCATGATTGAAGA 59.316 43.478 0.00 0.00 0.00 2.87
135 136 4.333649 CGTTGTACTGCCATGATTGAAGAT 59.666 41.667 0.00 0.00 0.00 2.40
136 137 5.575957 GTTGTACTGCCATGATTGAAGATG 58.424 41.667 0.00 0.00 0.00 2.90
137 138 5.101648 TGTACTGCCATGATTGAAGATGA 57.898 39.130 0.00 0.00 0.00 2.92
138 139 5.687780 TGTACTGCCATGATTGAAGATGAT 58.312 37.500 0.00 0.00 0.00 2.45
139 140 6.124340 TGTACTGCCATGATTGAAGATGATT 58.876 36.000 0.00 0.00 0.00 2.57
140 141 7.281841 TGTACTGCCATGATTGAAGATGATTA 58.718 34.615 0.00 0.00 0.00 1.75
141 142 6.879276 ACTGCCATGATTGAAGATGATTAG 57.121 37.500 0.00 0.00 0.00 1.73
142 143 6.598503 ACTGCCATGATTGAAGATGATTAGA 58.401 36.000 0.00 0.00 0.00 2.10
143 144 7.232188 ACTGCCATGATTGAAGATGATTAGAT 58.768 34.615 0.00 0.00 0.00 1.98
144 145 7.724506 ACTGCCATGATTGAAGATGATTAGATT 59.275 33.333 0.00 0.00 0.00 2.40
145 146 7.882179 TGCCATGATTGAAGATGATTAGATTG 58.118 34.615 0.00 0.00 0.00 2.67
146 147 7.039993 TGCCATGATTGAAGATGATTAGATTGG 60.040 37.037 0.00 0.00 0.00 3.16
147 148 7.176165 GCCATGATTGAAGATGATTAGATTGGA 59.824 37.037 0.00 0.00 0.00 3.53
148 149 9.074576 CCATGATTGAAGATGATTAGATTGGAA 57.925 33.333 0.00 0.00 0.00 3.53
150 151 9.863650 ATGATTGAAGATGATTAGATTGGAAGT 57.136 29.630 0.00 0.00 0.00 3.01
151 152 9.690913 TGATTGAAGATGATTAGATTGGAAGTT 57.309 29.630 0.00 0.00 0.00 2.66
155 156 9.745018 TGAAGATGATTAGATTGGAAGTTTTCT 57.255 29.630 0.00 0.00 0.00 2.52
157 158 9.745018 AAGATGATTAGATTGGAAGTTTTCTGA 57.255 29.630 0.00 0.00 0.00 3.27
158 159 9.745018 AGATGATTAGATTGGAAGTTTTCTGAA 57.255 29.630 0.00 0.00 0.00 3.02
242 244 9.595823 TTTTTGTCCGTGGAAAATATTAAAACA 57.404 25.926 0.00 0.00 0.00 2.83
243 245 8.576936 TTTGTCCGTGGAAAATATTAAAACAC 57.423 30.769 0.00 0.00 0.00 3.32
253 255 7.655732 GGAAAATATTAAAACACTGCACCTGTT 59.344 33.333 0.00 0.00 33.09 3.16
270 275 6.091441 GCACCTGTTATGAGACAGTAAGAAAG 59.909 42.308 4.54 0.00 44.34 2.62
288 294 6.705863 AGAAAGCAACTCTGATTTGTTTCT 57.294 33.333 19.77 19.77 41.15 2.52
554 564 2.990066 AGCAACCAGGAGCATACTAC 57.010 50.000 10.59 0.00 0.00 2.73
683 693 4.207019 CACAAAAAGTTGATTCGGTTGAGC 59.793 41.667 0.00 0.00 38.20 4.26
710 720 0.986992 CTTAACCGAAGTGCGTACCG 59.013 55.000 0.00 0.00 38.67 4.02
855 868 6.264518 TCAGACTTCCCCAAAATTTTCAGTAC 59.735 38.462 0.00 0.00 0.00 2.73
862 875 5.179182 CCCCAAAATTTTCAGTACATGCAAC 59.821 40.000 0.00 0.00 0.00 4.17
863 876 5.990996 CCCAAAATTTTCAGTACATGCAACT 59.009 36.000 0.00 0.00 0.00 3.16
864 877 6.146021 CCCAAAATTTTCAGTACATGCAACTC 59.854 38.462 0.00 0.00 0.00 3.01
865 878 6.146021 CCAAAATTTTCAGTACATGCAACTCC 59.854 38.462 0.00 0.00 0.00 3.85
900 930 0.620556 GGGGGATCTGTCTTTGCTGA 59.379 55.000 0.00 0.00 0.00 4.26
1038 1071 0.821711 TGACCCTTTCTGTTTGGGCG 60.822 55.000 0.00 0.00 44.56 6.13
1039 1072 2.142357 GACCCTTTCTGTTTGGGCGC 62.142 60.000 0.00 0.00 44.56 6.53
1041 1074 1.581447 CCTTTCTGTTTGGGCGCTC 59.419 57.895 7.64 2.47 0.00 5.03
1042 1075 1.207593 CTTTCTGTTTGGGCGCTCG 59.792 57.895 7.64 0.00 0.00 5.03
1158 1217 0.601558 CGCCTAAATAGAGCGGCCTA 59.398 55.000 0.00 0.00 45.88 3.93
1259 1320 5.348164 CAGGAAATTCAAACTTGGTCGTTT 58.652 37.500 0.00 0.00 37.58 3.60
1640 1754 0.038159 CGGTGTTCCTCTTCTTCGCT 60.038 55.000 0.00 0.00 0.00 4.93
1687 1801 3.042887 GTTTGATGGCGTTGTTCTTCAC 58.957 45.455 0.00 0.00 0.00 3.18
1775 1889 1.137675 CAATGCTCGATGGACTCCTGA 59.862 52.381 0.00 0.00 0.00 3.86
1787 1901 1.444553 CTCCTGAACTCGCGTGGTC 60.445 63.158 18.79 18.79 0.00 4.02
1826 1940 0.040067 CCTTCTTCGCCAACTTGTGC 60.040 55.000 0.00 0.00 0.00 4.57
1968 2083 1.537348 CGTGGAGGTGTTTGAAGTCGA 60.537 52.381 0.00 0.00 0.00 4.20
2112 2227 2.282816 CACGGCCCCAATGGTTCA 60.283 61.111 0.00 0.00 36.04 3.18
2171 2286 1.349067 AGTAGGGGTCAACGAGCTTT 58.651 50.000 0.00 0.00 0.00 3.51
2234 2349 4.124351 CTCTGGTTCGCGCCGGTA 62.124 66.667 1.90 0.00 36.33 4.02
2344 2462 1.814793 GCCCGCTTCTTCTTCTTCTT 58.185 50.000 0.00 0.00 0.00 2.52
2345 2463 1.735018 GCCCGCTTCTTCTTCTTCTTC 59.265 52.381 0.00 0.00 0.00 2.87
2346 2464 2.614229 GCCCGCTTCTTCTTCTTCTTCT 60.614 50.000 0.00 0.00 0.00 2.85
2606 2778 1.684734 ACGGTAGAGATGGGGCGTT 60.685 57.895 0.00 0.00 0.00 4.84
2614 2786 3.860930 GATGGGGCGTTGGTGTGGT 62.861 63.158 0.00 0.00 0.00 4.16
2865 3045 2.415608 GCCTGGTCGACCGATGAGA 61.416 63.158 28.70 9.96 39.43 3.27
3129 3339 2.812619 GGGAGAATGGCGGGAGGAG 61.813 68.421 0.00 0.00 0.00 3.69
3318 3529 3.199891 CCGGCGAAAATCGGGGTC 61.200 66.667 9.30 0.00 42.32 4.46
3345 3560 1.136774 GCGACTGGGCCGATTTTTC 59.863 57.895 0.00 0.00 0.00 2.29
3385 3607 1.306482 CCTGGAGAGGCCTTCCTGA 60.306 63.158 27.37 14.00 44.46 3.86
3471 3694 6.939730 TGAAGGTCTGCAACTAATGTTATCAA 59.060 34.615 0.00 0.00 34.60 2.57
3474 3711 7.593825 AGGTCTGCAACTAATGTTATCAAAAC 58.406 34.615 0.00 0.00 34.60 2.43
3678 3917 1.072266 ATACTCCAAGGTGCACCCAA 58.928 50.000 32.29 14.02 36.42 4.12
3682 3921 2.202395 CCAAGGTGCACCCAACCTG 61.202 63.158 32.29 19.78 36.42 4.00
3704 3943 6.191657 TGAAGGAACTATGCATCATGGTAT 57.808 37.500 0.19 0.00 38.49 2.73
3784 4023 7.790823 TGAATATGCAAATCGAATTCTCTCA 57.209 32.000 3.52 0.00 0.00 3.27
3840 4079 5.835280 AGGAGTTTTTGACCTGATTGAATGT 59.165 36.000 0.00 0.00 32.39 2.71
3848 4087 2.236146 ACCTGATTGAATGTAGGTGCGA 59.764 45.455 9.23 0.00 41.76 5.10
3879 4118 9.713684 ATTTATGTGAAATGATAAAGGGGAAGA 57.286 29.630 0.00 0.00 29.76 2.87
3933 4172 3.519913 GGACAAAGGACTAGAGTGGGAAT 59.480 47.826 0.00 0.00 0.00 3.01
3939 4178 4.479158 AGGACTAGAGTGGGAATCATCTC 58.521 47.826 0.00 0.00 0.00 2.75
3963 4202 3.007182 CCCTGATTTCAAGCACCACAATT 59.993 43.478 0.00 0.00 0.00 2.32
3966 4205 5.273674 TGATTTCAAGCACCACAATTTGA 57.726 34.783 2.79 0.00 0.00 2.69
3967 4206 5.668471 TGATTTCAAGCACCACAATTTGAA 58.332 33.333 2.79 0.00 37.66 2.69
3969 4208 6.424509 TGATTTCAAGCACCACAATTTGAATC 59.575 34.615 2.79 0.00 38.77 2.52
3971 4210 5.273674 TCAAGCACCACAATTTGAATCAA 57.726 34.783 2.79 0.00 0.00 2.57
3994 4233 3.895656 CTCAGTATCTATGGGTTTCGGGA 59.104 47.826 0.00 0.00 0.00 5.14
4008 4247 4.321008 GGTTTCGGGAAGAAGACAAATTCC 60.321 45.833 0.00 0.00 40.40 3.01
4056 4295 4.410400 CGGTGAACCTGGAGGCCC 62.410 72.222 0.00 0.00 39.32 5.80
4094 4333 0.597568 CAGGGCGTGAGAAATGCAAA 59.402 50.000 0.00 0.00 43.13 3.68
4096 4335 0.388520 GGGCGTGAGAAATGCAAACC 60.389 55.000 0.00 0.00 43.13 3.27
4100 4339 1.608590 CGTGAGAAATGCAAACCCACT 59.391 47.619 0.00 0.00 0.00 4.00
4199 4438 2.049433 CGCTTCCCGAGTTGACGT 60.049 61.111 0.00 0.00 40.02 4.34
4220 4459 4.384547 CGTGCGACAATTAATATGGATCGA 59.615 41.667 9.55 0.00 0.00 3.59
4251 4490 5.010282 ACCATCTCAAAATACACAGGTTCC 58.990 41.667 0.00 0.00 0.00 3.62
4259 4498 1.830279 TACACAGGTTCCTCGTCGAT 58.170 50.000 0.00 0.00 0.00 3.59
4266 4505 4.045104 CAGGTTCCTCGTCGATGATTAAG 58.955 47.826 7.99 0.00 0.00 1.85
4315 4554 4.033932 TCAGCGACAATTAATGTGAATCGG 59.966 41.667 0.00 0.00 44.12 4.18
4387 5655 7.173047 GTGTCAAGTATTTTGGCAAATGGAAAT 59.827 33.333 14.29 6.41 35.64 2.17
4395 6327 1.089112 GCAAATGGAAATTGCCAGCC 58.911 50.000 11.82 0.00 45.73 4.85
4396 6328 1.361793 CAAATGGAAATTGCCAGCCG 58.638 50.000 11.82 0.00 42.15 5.52
4397 6329 1.067000 CAAATGGAAATTGCCAGCCGA 60.067 47.619 11.82 0.00 42.15 5.54
4406 6338 1.462731 TTGCCAGCCGATGTTTGCTT 61.463 50.000 0.00 0.00 35.12 3.91
4408 6340 0.733909 GCCAGCCGATGTTTGCTTTC 60.734 55.000 0.00 0.00 35.12 2.62
4409 6341 0.454957 CCAGCCGATGTTTGCTTTCG 60.455 55.000 0.00 0.00 35.12 3.46
4411 6343 0.951558 AGCCGATGTTTGCTTTCGTT 59.048 45.000 0.00 0.00 32.94 3.85
4414 6346 2.043411 CCGATGTTTGCTTTCGTTGTG 58.957 47.619 0.00 0.00 0.00 3.33
4416 6348 3.358775 CGATGTTTGCTTTCGTTGTGAA 58.641 40.909 0.00 0.00 33.85 3.18
4417 6349 3.788694 CGATGTTTGCTTTCGTTGTGAAA 59.211 39.130 0.00 0.00 44.19 2.69
4422 6354 4.582701 TTGCTTTCGTTGTGAAATGGAT 57.417 36.364 0.00 0.00 45.21 3.41
4424 6356 4.297510 TGCTTTCGTTGTGAAATGGATTG 58.702 39.130 0.00 0.00 45.21 2.67
4425 6357 3.121778 GCTTTCGTTGTGAAATGGATTGC 59.878 43.478 0.00 0.00 45.21 3.56
4427 6359 3.998099 TCGTTGTGAAATGGATTGCAA 57.002 38.095 0.00 0.00 0.00 4.08
4429 6361 3.317711 TCGTTGTGAAATGGATTGCAAGT 59.682 39.130 4.94 0.00 0.00 3.16
4431 6363 4.507388 CGTTGTGAAATGGATTGCAAGTTT 59.493 37.500 4.94 3.56 0.00 2.66
4434 6366 6.154203 TGTGAAATGGATTGCAAGTTTGTA 57.846 33.333 4.94 0.00 0.00 2.41
4438 6370 6.478344 TGAAATGGATTGCAAGTTTGTAACAC 59.522 34.615 4.94 0.00 35.65 3.32
4439 6371 5.789643 ATGGATTGCAAGTTTGTAACACT 57.210 34.783 4.94 0.00 35.65 3.55
4441 6373 4.202101 TGGATTGCAAGTTTGTAACACTGG 60.202 41.667 4.94 0.00 35.65 4.00
4442 6374 2.861462 TGCAAGTTTGTAACACTGGC 57.139 45.000 0.00 0.00 41.10 4.85
4443 6375 1.064803 TGCAAGTTTGTAACACTGGCG 59.935 47.619 0.00 0.00 43.34 5.69
4445 6377 2.223386 GCAAGTTTGTAACACTGGCGAA 60.223 45.455 0.00 0.00 31.46 4.70
4446 6378 3.359654 CAAGTTTGTAACACTGGCGAAC 58.640 45.455 0.00 0.00 0.00 3.95
4450 6382 4.451096 AGTTTGTAACACTGGCGAACATAG 59.549 41.667 0.00 0.00 0.00 2.23
4451 6383 2.343101 TGTAACACTGGCGAACATAGC 58.657 47.619 0.00 0.00 0.00 2.97
4452 6384 1.323534 GTAACACTGGCGAACATAGCG 59.676 52.381 0.00 0.00 35.00 4.26
4454 6386 0.736325 ACACTGGCGAACATAGCGTC 60.736 55.000 0.00 0.00 35.00 5.19
4455 6387 0.458543 CACTGGCGAACATAGCGTCT 60.459 55.000 0.00 0.00 33.92 4.18
4457 6389 1.475280 ACTGGCGAACATAGCGTCTTA 59.525 47.619 0.00 0.00 33.92 2.10
4458 6390 2.120232 CTGGCGAACATAGCGTCTTAG 58.880 52.381 0.00 0.00 33.92 2.18
4459 6391 0.853419 GGCGAACATAGCGTCTTAGC 59.147 55.000 0.00 0.00 35.00 3.09
4462 6394 1.268386 CGAACATAGCGTCTTAGCCGA 60.268 52.381 0.00 0.00 38.01 5.54
4464 6396 3.381949 GAACATAGCGTCTTAGCCGAAT 58.618 45.455 0.00 0.00 38.01 3.34
4466 6398 2.061773 CATAGCGTCTTAGCCGAATGG 58.938 52.381 0.00 0.00 38.01 3.16
4495 6451 3.621794 GTGCAGACTGAACAATGAACAC 58.378 45.455 8.86 0.00 0.00 3.32
4496 6452 3.313526 GTGCAGACTGAACAATGAACACT 59.686 43.478 8.86 0.00 0.00 3.55
4497 6453 3.313249 TGCAGACTGAACAATGAACACTG 59.687 43.478 6.65 0.00 0.00 3.66
4498 6454 3.561310 GCAGACTGAACAATGAACACTGA 59.439 43.478 6.65 0.00 0.00 3.41
4500 6456 5.505286 CAGACTGAACAATGAACACTGAAC 58.495 41.667 0.00 0.00 0.00 3.18
4501 6457 5.065090 CAGACTGAACAATGAACACTGAACA 59.935 40.000 0.00 0.00 0.00 3.18
4502 6458 5.065218 AGACTGAACAATGAACACTGAACAC 59.935 40.000 0.00 0.00 0.00 3.32
4503 6459 4.943705 ACTGAACAATGAACACTGAACACT 59.056 37.500 0.00 0.00 0.00 3.55
4504 6460 5.415701 ACTGAACAATGAACACTGAACACTT 59.584 36.000 0.00 0.00 0.00 3.16
4507 6463 6.597672 TGAACAATGAACACTGAACACTTACT 59.402 34.615 0.00 0.00 0.00 2.24
4509 6465 7.391148 ACAATGAACACTGAACACTTACTTT 57.609 32.000 0.00 0.00 0.00 2.66
4511 6467 7.754924 ACAATGAACACTGAACACTTACTTTTG 59.245 33.333 0.00 0.00 0.00 2.44
4512 6468 7.624360 ATGAACACTGAACACTTACTTTTGA 57.376 32.000 0.00 0.00 0.00 2.69
4513 6469 6.837992 TGAACACTGAACACTTACTTTTGAC 58.162 36.000 0.00 0.00 0.00 3.18
4514 6470 6.428465 TGAACACTGAACACTTACTTTTGACA 59.572 34.615 0.00 0.00 0.00 3.58
4516 6472 8.500753 AACACTGAACACTTACTTTTGACATA 57.499 30.769 0.00 0.00 0.00 2.29
4517 6473 8.500753 ACACTGAACACTTACTTTTGACATAA 57.499 30.769 0.00 0.00 0.00 1.90
4518 6474 8.395633 ACACTGAACACTTACTTTTGACATAAC 58.604 33.333 0.00 0.00 0.00 1.89
4519 6475 8.394877 CACTGAACACTTACTTTTGACATAACA 58.605 33.333 0.00 0.00 0.00 2.41
4520 6476 9.120538 ACTGAACACTTACTTTTGACATAACAT 57.879 29.630 0.00 0.00 0.00 2.71
4521 6477 9.599322 CTGAACACTTACTTTTGACATAACATC 57.401 33.333 0.00 0.00 0.00 3.06
4526 6482 9.764870 CACTTACTTTTGACATAACATCATCTG 57.235 33.333 0.00 0.00 0.00 2.90
4527 6483 9.507329 ACTTACTTTTGACATAACATCATCTGT 57.493 29.630 0.00 0.00 40.84 3.41
4528 6484 9.979270 CTTACTTTTGACATAACATCATCTGTC 57.021 33.333 0.00 0.00 36.98 3.51
4530 6486 8.037382 ACTTTTGACATAACATCATCTGTCTG 57.963 34.615 0.00 0.00 38.98 3.51
4533 6489 6.973229 TGACATAACATCATCTGTCTGTTG 57.027 37.500 0.00 0.00 38.98 3.33
4535 6491 6.053632 ACATAACATCATCTGTCTGTTGGA 57.946 37.500 9.55 0.00 36.98 3.53
4536 6492 5.877012 ACATAACATCATCTGTCTGTTGGAC 59.123 40.000 9.55 0.00 44.70 4.02
4537 6493 4.630644 AACATCATCTGTCTGTTGGACT 57.369 40.909 0.00 0.00 44.74 3.85
4538 6494 4.630644 ACATCATCTGTCTGTTGGACTT 57.369 40.909 0.00 0.00 44.74 3.01
4539 6495 4.321718 ACATCATCTGTCTGTTGGACTTG 58.678 43.478 0.00 0.00 44.74 3.16
4540 6496 4.202398 ACATCATCTGTCTGTTGGACTTGT 60.202 41.667 0.00 0.00 44.74 3.16
4542 6498 4.380531 TCATCTGTCTGTTGGACTTGTTC 58.619 43.478 0.00 0.00 44.74 3.18
4543 6499 4.101585 TCATCTGTCTGTTGGACTTGTTCT 59.898 41.667 0.00 0.00 44.74 3.01
4544 6500 4.487714 TCTGTCTGTTGGACTTGTTCTT 57.512 40.909 0.00 0.00 44.74 2.52
4545 6501 4.843728 TCTGTCTGTTGGACTTGTTCTTT 58.156 39.130 0.00 0.00 44.74 2.52
4547 6503 5.710099 TCTGTCTGTTGGACTTGTTCTTTTT 59.290 36.000 0.00 0.00 44.74 1.94
4548 6504 5.708948 TGTCTGTTGGACTTGTTCTTTTTG 58.291 37.500 0.00 0.00 44.74 2.44
4549 6505 5.102313 GTCTGTTGGACTTGTTCTTTTTGG 58.898 41.667 0.00 0.00 41.46 3.28
4550 6506 4.770010 TCTGTTGGACTTGTTCTTTTTGGT 59.230 37.500 0.00 0.00 0.00 3.67
4551 6507 5.946972 TCTGTTGGACTTGTTCTTTTTGGTA 59.053 36.000 0.00 0.00 0.00 3.25
4552 6508 6.434652 TCTGTTGGACTTGTTCTTTTTGGTAA 59.565 34.615 0.00 0.00 0.00 2.85
4553 6509 6.626302 TGTTGGACTTGTTCTTTTTGGTAAG 58.374 36.000 0.00 0.00 0.00 2.34
4558 6514 7.776030 TGGACTTGTTCTTTTTGGTAAGATGTA 59.224 33.333 0.00 0.00 34.33 2.29
4559 6515 8.626526 GGACTTGTTCTTTTTGGTAAGATGTAA 58.373 33.333 0.00 0.00 34.33 2.41
4560 6516 9.447040 GACTTGTTCTTTTTGGTAAGATGTAAC 57.553 33.333 0.00 0.00 34.33 2.50
4562 6518 7.883391 TGTTCTTTTTGGTAAGATGTAACCA 57.117 32.000 0.00 0.00 43.99 3.67
4563 6519 7.936584 TGTTCTTTTTGGTAAGATGTAACCAG 58.063 34.615 0.00 0.00 46.11 4.00
4564 6520 7.013846 TGTTCTTTTTGGTAAGATGTAACCAGG 59.986 37.037 0.00 0.00 46.11 4.45
4566 6522 7.466804 TCTTTTTGGTAAGATGTAACCAGGAT 58.533 34.615 0.00 0.00 46.11 3.24
4567 6523 7.610305 TCTTTTTGGTAAGATGTAACCAGGATC 59.390 37.037 0.00 0.00 46.11 3.36
4568 6524 6.381498 TTTGGTAAGATGTAACCAGGATCA 57.619 37.500 0.00 0.00 46.11 2.92
4569 6525 6.575244 TTGGTAAGATGTAACCAGGATCAT 57.425 37.500 0.00 0.00 46.11 2.45
4570 6526 6.575244 TGGTAAGATGTAACCAGGATCATT 57.425 37.500 0.00 0.00 40.84 2.57
4572 6528 7.410174 TGGTAAGATGTAACCAGGATCATTTT 58.590 34.615 0.00 0.00 40.84 1.82
4573 6529 7.339212 TGGTAAGATGTAACCAGGATCATTTTG 59.661 37.037 0.00 0.00 40.84 2.44
4574 6530 7.339466 GGTAAGATGTAACCAGGATCATTTTGT 59.661 37.037 0.00 0.00 35.73 2.83
4575 6531 7.781324 AAGATGTAACCAGGATCATTTTGTT 57.219 32.000 0.00 0.00 0.00 2.83
4576 6532 8.877864 AAGATGTAACCAGGATCATTTTGTTA 57.122 30.769 0.00 0.00 0.00 2.41
4577 6533 8.281212 AGATGTAACCAGGATCATTTTGTTAC 57.719 34.615 13.39 13.39 38.82 2.50
4578 6534 6.827586 TGTAACCAGGATCATTTTGTTACC 57.172 37.500 15.85 0.00 38.02 2.85
4579 6535 5.712917 TGTAACCAGGATCATTTTGTTACCC 59.287 40.000 15.85 0.00 38.02 3.69
4581 6537 5.789574 ACCAGGATCATTTTGTTACCCTA 57.210 39.130 0.00 0.00 0.00 3.53
4582 6538 5.755849 ACCAGGATCATTTTGTTACCCTAG 58.244 41.667 0.00 0.00 0.00 3.02
4583 6539 5.491078 ACCAGGATCATTTTGTTACCCTAGA 59.509 40.000 0.00 0.00 0.00 2.43
4585 6541 6.543831 CCAGGATCATTTTGTTACCCTAGAAG 59.456 42.308 0.00 0.00 0.00 2.85
4586 6542 6.038714 CAGGATCATTTTGTTACCCTAGAAGC 59.961 42.308 0.00 0.00 0.00 3.86
4587 6543 5.885912 GGATCATTTTGTTACCCTAGAAGCA 59.114 40.000 0.00 0.00 0.00 3.91
4588 6544 6.038714 GGATCATTTTGTTACCCTAGAAGCAG 59.961 42.308 0.00 0.00 0.00 4.24
4597 6553 2.821991 CCTAGAAGCAGGGTATTCGG 57.178 55.000 0.00 0.00 31.47 4.30
4598 6554 1.344763 CCTAGAAGCAGGGTATTCGGG 59.655 57.143 0.00 0.00 31.47 5.14
4599 6555 0.756903 TAGAAGCAGGGTATTCGGGC 59.243 55.000 0.00 0.00 0.00 6.13
4600 6556 0.983378 AGAAGCAGGGTATTCGGGCT 60.983 55.000 0.00 0.00 36.13 5.19
4601 6557 0.533085 GAAGCAGGGTATTCGGGCTC 60.533 60.000 0.00 0.00 32.84 4.70
4602 6558 1.984288 AAGCAGGGTATTCGGGCTCC 61.984 60.000 0.00 0.00 32.84 4.70
4603 6559 2.829592 CAGGGTATTCGGGCTCCC 59.170 66.667 0.00 0.00 40.16 4.30
4604 6560 2.703430 AGGGTATTCGGGCTCCCT 59.297 61.111 3.11 0.00 44.62 4.20
4605 6561 2.829592 GGGTATTCGGGCTCCCTG 59.170 66.667 3.11 0.00 37.18 4.45
4606 6562 2.070650 GGGTATTCGGGCTCCCTGT 61.071 63.158 3.11 0.00 37.18 4.00
4607 6563 0.761702 GGGTATTCGGGCTCCCTGTA 60.762 60.000 3.11 0.00 37.18 2.74
4608 6564 1.349067 GGTATTCGGGCTCCCTGTAT 58.651 55.000 3.11 0.00 0.00 2.29
4609 6565 2.532843 GGTATTCGGGCTCCCTGTATA 58.467 52.381 3.11 0.00 0.00 1.47
4610 6566 3.105283 GGTATTCGGGCTCCCTGTATAT 58.895 50.000 3.11 0.00 27.84 0.86
4611 6567 3.118738 GGTATTCGGGCTCCCTGTATATG 60.119 52.174 3.11 0.00 27.84 1.78
4612 6568 0.685097 TTCGGGCTCCCTGTATATGC 59.315 55.000 3.11 0.00 0.00 3.14
4613 6569 0.471022 TCGGGCTCCCTGTATATGCA 60.471 55.000 3.11 0.00 0.00 3.96
4614 6570 0.320771 CGGGCTCCCTGTATATGCAC 60.321 60.000 3.11 0.00 0.00 4.57
4615 6571 0.036875 GGGCTCCCTGTATATGCACC 59.963 60.000 0.00 0.00 0.00 5.01
4617 6573 0.951040 GCTCCCTGTATATGCACCGC 60.951 60.000 0.00 0.00 0.00 5.68
4618 6574 0.667487 CTCCCTGTATATGCACCGCG 60.667 60.000 0.00 0.00 0.00 6.46
4619 6575 2.317609 CCCTGTATATGCACCGCGC 61.318 63.158 0.00 0.00 42.89 6.86
4636 6592 1.418373 CGCAAAGCAAGTAAAAGCCC 58.582 50.000 0.00 0.00 0.00 5.19
4637 6593 1.269517 CGCAAAGCAAGTAAAAGCCCA 60.270 47.619 0.00 0.00 0.00 5.36
4638 6594 2.801342 CGCAAAGCAAGTAAAAGCCCAA 60.801 45.455 0.00 0.00 0.00 4.12
4639 6595 3.202097 GCAAAGCAAGTAAAAGCCCAAA 58.798 40.909 0.00 0.00 0.00 3.28
4640 6596 3.248363 GCAAAGCAAGTAAAAGCCCAAAG 59.752 43.478 0.00 0.00 0.00 2.77
4643 6599 5.551305 AAGCAAGTAAAAGCCCAAAGAAT 57.449 34.783 0.00 0.00 0.00 2.40
4644 6600 5.551305 AGCAAGTAAAAGCCCAAAGAATT 57.449 34.783 0.00 0.00 0.00 2.17
4646 6602 4.083855 GCAAGTAAAAGCCCAAAGAATTGC 60.084 41.667 0.00 0.00 35.10 3.56
4647 6603 4.953940 AGTAAAAGCCCAAAGAATTGCA 57.046 36.364 0.00 0.00 35.10 4.08
4648 6604 4.631131 AGTAAAAGCCCAAAGAATTGCAC 58.369 39.130 0.00 0.00 35.10 4.57
4649 6605 2.549064 AAAGCCCAAAGAATTGCACC 57.451 45.000 0.00 0.00 35.10 5.01
4651 6607 0.827507 AGCCCAAAGAATTGCACCGT 60.828 50.000 0.00 0.00 35.10 4.83
4652 6608 0.388520 GCCCAAAGAATTGCACCGTC 60.389 55.000 0.00 0.00 35.10 4.79
4653 6609 0.109781 CCCAAAGAATTGCACCGTCG 60.110 55.000 0.00 0.00 35.10 5.12
4655 6611 0.871722 CAAAGAATTGCACCGTCGGA 59.128 50.000 20.51 0.00 0.00 4.55
4656 6612 1.468520 CAAAGAATTGCACCGTCGGAT 59.531 47.619 20.51 0.00 0.00 4.18
4658 6614 0.249120 AGAATTGCACCGTCGGATGA 59.751 50.000 20.51 0.84 0.00 2.92
4659 6615 0.373716 GAATTGCACCGTCGGATGAC 59.626 55.000 20.51 9.23 41.91 3.06
4660 6616 0.321210 AATTGCACCGTCGGATGACA 60.321 50.000 20.51 11.45 45.80 3.58
4661 6617 0.107703 ATTGCACCGTCGGATGACAT 60.108 50.000 20.51 5.51 45.80 3.06
4662 6618 0.533032 TTGCACCGTCGGATGACATA 59.467 50.000 20.51 4.48 45.80 2.29
4663 6619 0.179121 TGCACCGTCGGATGACATAC 60.179 55.000 20.51 0.53 45.80 2.39
4665 6621 1.864435 GCACCGTCGGATGACATACTC 60.864 57.143 20.51 0.00 45.80 2.59
4667 6623 1.404391 ACCGTCGGATGACATACTCAC 59.596 52.381 20.51 0.00 45.80 3.51
4669 6625 2.451132 CGTCGGATGACATACTCACAC 58.549 52.381 0.00 0.00 45.80 3.82
4670 6626 2.794981 CGTCGGATGACATACTCACACC 60.795 54.545 0.00 0.00 45.80 4.16
4671 6627 2.427453 GTCGGATGACATACTCACACCT 59.573 50.000 0.00 0.00 44.82 4.00
4672 6628 2.427095 TCGGATGACATACTCACACCTG 59.573 50.000 0.00 0.00 30.53 4.00
4674 6630 3.119137 CGGATGACATACTCACACCTGAA 60.119 47.826 0.00 0.00 30.53 3.02
4675 6631 4.620567 CGGATGACATACTCACACCTGAAA 60.621 45.833 0.00 0.00 30.53 2.69
4676 6632 4.631813 GGATGACATACTCACACCTGAAAC 59.368 45.833 0.00 0.00 0.00 2.78
4677 6633 4.681074 TGACATACTCACACCTGAAACA 57.319 40.909 0.00 0.00 0.00 2.83
4678 6634 4.631131 TGACATACTCACACCTGAAACAG 58.369 43.478 0.00 0.00 0.00 3.16
4679 6635 4.343814 TGACATACTCACACCTGAAACAGA 59.656 41.667 0.00 0.00 32.44 3.41
4680 6636 5.163353 TGACATACTCACACCTGAAACAGAA 60.163 40.000 0.00 0.00 32.44 3.02
4683 6639 3.950397 ACTCACACCTGAAACAGAAACA 58.050 40.909 0.00 0.00 32.44 2.83
4684 6640 3.689649 ACTCACACCTGAAACAGAAACAC 59.310 43.478 0.00 0.00 32.44 3.32
4685 6641 3.013921 TCACACCTGAAACAGAAACACC 58.986 45.455 0.00 0.00 32.44 4.16
4687 6643 2.291282 ACACCTGAAACAGAAACACCCA 60.291 45.455 0.00 0.00 32.44 4.51
4688 6644 2.757868 CACCTGAAACAGAAACACCCAA 59.242 45.455 0.00 0.00 32.44 4.12
4689 6645 2.758423 ACCTGAAACAGAAACACCCAAC 59.242 45.455 0.00 0.00 32.44 3.77
4690 6646 2.757868 CCTGAAACAGAAACACCCAACA 59.242 45.455 0.00 0.00 32.44 3.33
4693 6649 4.590918 TGAAACAGAAACACCCAACACTA 58.409 39.130 0.00 0.00 0.00 2.74
4694 6650 4.638421 TGAAACAGAAACACCCAACACTAG 59.362 41.667 0.00 0.00 0.00 2.57
4695 6651 3.926058 ACAGAAACACCCAACACTAGT 57.074 42.857 0.00 0.00 0.00 2.57
4696 6652 3.805207 ACAGAAACACCCAACACTAGTC 58.195 45.455 0.00 0.00 0.00 2.59
4698 6654 3.809832 CAGAAACACCCAACACTAGTCTG 59.190 47.826 0.00 0.00 0.00 3.51
4699 6655 2.256117 AACACCCAACACTAGTCTGC 57.744 50.000 0.00 0.00 0.00 4.26
4700 6656 1.128200 ACACCCAACACTAGTCTGCA 58.872 50.000 0.00 0.00 0.00 4.41
4701 6657 1.488812 ACACCCAACACTAGTCTGCAA 59.511 47.619 0.00 0.00 0.00 4.08
4702 6658 2.092646 ACACCCAACACTAGTCTGCAAA 60.093 45.455 0.00 0.00 0.00 3.68
4703 6659 3.149196 CACCCAACACTAGTCTGCAAAT 58.851 45.455 0.00 0.00 0.00 2.32
4704 6660 3.569701 CACCCAACACTAGTCTGCAAATT 59.430 43.478 0.00 0.00 0.00 1.82
4705 6661 4.037923 CACCCAACACTAGTCTGCAAATTT 59.962 41.667 0.00 0.00 0.00 1.82
4706 6662 5.240623 CACCCAACACTAGTCTGCAAATTTA 59.759 40.000 0.00 0.00 0.00 1.40
4707 6663 5.240844 ACCCAACACTAGTCTGCAAATTTAC 59.759 40.000 0.00 0.00 0.00 2.01
4708 6664 5.240623 CCCAACACTAGTCTGCAAATTTACA 59.759 40.000 0.00 0.00 0.00 2.41
4710 6666 7.023575 CCAACACTAGTCTGCAAATTTACATC 58.976 38.462 0.00 0.00 0.00 3.06
4711 6667 6.743575 ACACTAGTCTGCAAATTTACATCC 57.256 37.500 0.00 0.00 0.00 3.51
4712 6668 6.237901 ACACTAGTCTGCAAATTTACATCCA 58.762 36.000 0.00 0.00 0.00 3.41
4713 6669 6.714810 ACACTAGTCTGCAAATTTACATCCAA 59.285 34.615 0.00 0.00 0.00 3.53
4714 6670 7.023575 CACTAGTCTGCAAATTTACATCCAAC 58.976 38.462 0.00 0.00 0.00 3.77
4715 6671 6.714810 ACTAGTCTGCAAATTTACATCCAACA 59.285 34.615 0.00 0.00 0.00 3.33
4717 6673 6.996509 AGTCTGCAAATTTACATCCAACATT 58.003 32.000 0.00 0.00 0.00 2.71
4718 6674 8.121305 AGTCTGCAAATTTACATCCAACATTA 57.879 30.769 0.00 0.00 0.00 1.90
4719 6675 8.246180 AGTCTGCAAATTTACATCCAACATTAG 58.754 33.333 0.00 0.00 0.00 1.73
4720 6676 8.028938 GTCTGCAAATTTACATCCAACATTAGT 58.971 33.333 0.00 0.00 0.00 2.24
4721 6677 8.243426 TCTGCAAATTTACATCCAACATTAGTC 58.757 33.333 0.00 0.00 0.00 2.59
4722 6678 8.121305 TGCAAATTTACATCCAACATTAGTCT 57.879 30.769 0.00 0.00 0.00 3.24
4723 6679 8.028354 TGCAAATTTACATCCAACATTAGTCTG 58.972 33.333 0.00 0.00 0.00 3.51
4734 6690 7.745015 TCCAACATTAGTCTGTAAATTTACGC 58.255 34.615 20.51 14.00 36.45 4.42
4737 6693 9.901724 CAACATTAGTCTGTAAATTTACGCTAG 57.098 33.333 20.51 13.76 36.45 3.42
4739 6695 7.762615 ACATTAGTCTGTAAATTTACGCTAGCA 59.237 33.333 20.51 10.64 36.45 3.49
4740 6696 7.751047 TTAGTCTGTAAATTTACGCTAGCAG 57.249 36.000 20.51 12.60 36.45 4.24
4742 6698 5.577164 AGTCTGTAAATTTACGCTAGCAGTG 59.423 40.000 20.51 0.46 36.45 3.66
4744 6700 6.529125 GTCTGTAAATTTACGCTAGCAGTGTA 59.471 38.462 20.51 6.19 39.94 2.90
4746 6702 7.762615 TCTGTAAATTTACGCTAGCAGTGTATT 59.237 33.333 20.51 13.14 40.46 1.89
4747 6703 7.902032 TGTAAATTTACGCTAGCAGTGTATTC 58.098 34.615 20.51 7.53 40.46 1.75
4748 6704 7.762615 TGTAAATTTACGCTAGCAGTGTATTCT 59.237 33.333 20.51 10.03 40.46 2.40
4750 6706 5.578005 TTTACGCTAGCAGTGTATTCTCT 57.422 39.130 16.45 0.00 40.46 3.10
4751 6707 3.701532 ACGCTAGCAGTGTATTCTCTC 57.298 47.619 16.45 0.00 37.15 3.20
4752 6708 2.359531 ACGCTAGCAGTGTATTCTCTCC 59.640 50.000 16.45 0.00 37.15 3.71
4753 6709 2.359214 CGCTAGCAGTGTATTCTCTCCA 59.641 50.000 16.45 0.00 0.00 3.86
4754 6710 3.549827 CGCTAGCAGTGTATTCTCTCCAG 60.550 52.174 16.45 0.00 0.00 3.86
4757 6713 3.435275 AGCAGTGTATTCTCTCCAGTGA 58.565 45.455 0.00 0.00 32.48 3.41
4759 6715 3.929610 GCAGTGTATTCTCTCCAGTGAAC 59.070 47.826 0.00 0.00 32.48 3.18
4760 6716 4.561530 GCAGTGTATTCTCTCCAGTGAACA 60.562 45.833 0.00 0.00 32.48 3.18
4762 6718 6.628175 GCAGTGTATTCTCTCCAGTGAACATA 60.628 42.308 0.00 0.00 32.48 2.29
4763 6719 7.495901 CAGTGTATTCTCTCCAGTGAACATAT 58.504 38.462 0.00 0.00 32.48 1.78
4764 6720 7.984050 CAGTGTATTCTCTCCAGTGAACATATT 59.016 37.037 0.00 0.00 32.48 1.28
4765 6721 8.543774 AGTGTATTCTCTCCAGTGAACATATTT 58.456 33.333 0.00 0.00 31.45 1.40
4766 6722 8.607459 GTGTATTCTCTCCAGTGAACATATTTG 58.393 37.037 0.00 0.00 31.45 2.32
4767 6723 8.321353 TGTATTCTCTCCAGTGAACATATTTGT 58.679 33.333 0.00 0.00 37.82 2.83
4768 6724 9.817809 GTATTCTCTCCAGTGAACATATTTGTA 57.182 33.333 0.00 0.00 34.06 2.41
4770 6726 8.948631 TTCTCTCCAGTGAACATATTTGTATC 57.051 34.615 0.00 0.00 34.06 2.24
4771 6727 7.500992 TCTCTCCAGTGAACATATTTGTATCC 58.499 38.462 0.00 0.00 34.06 2.59
4772 6728 6.591935 TCTCCAGTGAACATATTTGTATCCC 58.408 40.000 0.00 0.00 34.06 3.85
4773 6729 5.690865 TCCAGTGAACATATTTGTATCCCC 58.309 41.667 0.00 0.00 34.06 4.81
4778 6822 5.531287 GTGAACATATTTGTATCCCCACTCC 59.469 44.000 0.00 0.00 34.06 3.85
4828 6872 8.197439 GCTAATATCCCCAACCAATTATATTGC 58.803 37.037 0.00 0.00 0.00 3.56
4831 6875 4.624913 TCCCCAACCAATTATATTGCCAA 58.375 39.130 0.00 0.00 0.00 4.52
4833 6877 4.367450 CCCAACCAATTATATTGCCAACG 58.633 43.478 0.00 0.00 0.00 4.10
4889 6933 7.595604 TGTATATGTATGATGCCATGCTTTTG 58.404 34.615 0.00 0.00 36.51 2.44
4946 6990 5.225642 CAGAAAATCCAAAAGACAGCTTCC 58.774 41.667 0.00 0.00 31.82 3.46
4947 6991 4.895297 AGAAAATCCAAAAGACAGCTTCCA 59.105 37.500 0.00 0.00 31.82 3.53
4950 6994 3.795688 TCCAAAAGACAGCTTCCAGAT 57.204 42.857 0.00 0.00 31.82 2.90
4962 7006 5.188555 ACAGCTTCCAGATACATCTTCTCAA 59.811 40.000 0.00 0.00 34.22 3.02
5012 7056 8.472683 TTTTTCTTTCATGAATTTGTGAACGT 57.527 26.923 9.40 0.00 34.34 3.99
5013 7057 8.472683 TTTTCTTTCATGAATTTGTGAACGTT 57.527 26.923 9.40 0.00 34.34 3.99
5014 7058 8.472683 TTTCTTTCATGAATTTGTGAACGTTT 57.527 26.923 9.40 0.00 34.34 3.60
5015 7059 9.574458 TTTCTTTCATGAATTTGTGAACGTTTA 57.426 25.926 9.40 0.00 34.34 2.01
5016 7060 9.743057 TTCTTTCATGAATTTGTGAACGTTTAT 57.257 25.926 9.40 0.00 34.34 1.40
5017 7061 9.179552 TCTTTCATGAATTTGTGAACGTTTATG 57.820 29.630 9.40 0.00 34.34 1.90
5018 7062 6.926280 TCATGAATTTGTGAACGTTTATGC 57.074 33.333 0.46 0.00 0.00 3.14
5019 7063 6.442112 TCATGAATTTGTGAACGTTTATGCA 58.558 32.000 0.46 0.00 0.00 3.96
5020 7064 6.920210 TCATGAATTTGTGAACGTTTATGCAA 59.080 30.769 0.46 3.12 0.00 4.08
5021 7065 7.598118 TCATGAATTTGTGAACGTTTATGCAAT 59.402 29.630 0.46 0.00 0.00 3.56
5022 7066 7.332003 TGAATTTGTGAACGTTTATGCAATC 57.668 32.000 0.46 2.80 0.00 2.67
5023 7067 7.144661 TGAATTTGTGAACGTTTATGCAATCT 58.855 30.769 0.46 0.00 0.00 2.40
5024 7068 6.932901 ATTTGTGAACGTTTATGCAATCTG 57.067 33.333 0.46 0.00 0.00 2.90
5025 7069 5.431420 TTGTGAACGTTTATGCAATCTGT 57.569 34.783 0.46 0.00 0.00 3.41
5026 7070 4.782156 TGTGAACGTTTATGCAATCTGTG 58.218 39.130 0.46 0.00 0.00 3.66
5027 7071 4.274705 TGTGAACGTTTATGCAATCTGTGT 59.725 37.500 0.46 0.00 0.00 3.72
5028 7072 5.467063 TGTGAACGTTTATGCAATCTGTGTA 59.533 36.000 0.46 0.00 0.00 2.90
5029 7073 6.148645 TGTGAACGTTTATGCAATCTGTGTAT 59.851 34.615 0.46 0.00 36.42 2.29
5030 7074 7.332182 TGTGAACGTTTATGCAATCTGTGTATA 59.668 33.333 0.46 0.00 34.06 1.47
5031 7075 8.335356 GTGAACGTTTATGCAATCTGTGTATAT 58.665 33.333 0.46 0.00 35.10 0.86
5032 7076 8.888716 TGAACGTTTATGCAATCTGTGTATATT 58.111 29.630 0.46 0.00 35.10 1.28
5033 7077 9.716507 GAACGTTTATGCAATCTGTGTATATTT 57.283 29.630 0.46 0.00 35.10 1.40
5035 7079 9.716507 ACGTTTATGCAATCTGTGTATATTTTC 57.283 29.630 0.00 0.00 35.10 2.29
5036 7080 9.715123 CGTTTATGCAATCTGTGTATATTTTCA 57.285 29.630 0.00 0.00 35.10 2.69
5055 7099 8.688747 ATTTTCAAAATTTGGACTATTTGCCA 57.311 26.923 5.83 0.00 33.81 4.92
5056 7100 8.688747 TTTTCAAAATTTGGACTATTTGCCAT 57.311 26.923 5.83 0.00 33.81 4.40
5057 7101 9.784531 TTTTCAAAATTTGGACTATTTGCCATA 57.215 25.926 5.83 0.00 33.81 2.74
5058 7102 9.956640 TTTCAAAATTTGGACTATTTGCCATAT 57.043 25.926 5.83 0.00 33.81 1.78
5059 7103 9.956640 TTCAAAATTTGGACTATTTGCCATATT 57.043 25.926 5.83 0.00 37.40 1.28
5060 7104 9.598517 TCAAAATTTGGACTATTTGCCATATTC 57.401 29.630 5.83 0.00 35.63 1.75
5061 7105 9.603921 CAAAATTTGGACTATTTGCCATATTCT 57.396 29.630 0.00 0.00 35.63 2.40
5063 7107 9.603921 AAATTTGGACTATTTGCCATATTCTTG 57.396 29.630 0.00 0.00 35.63 3.02
5064 7108 7.953005 TTTGGACTATTTGCCATATTCTTGA 57.047 32.000 0.00 0.00 33.46 3.02
5065 7109 7.953005 TTGGACTATTTGCCATATTCTTGAA 57.047 32.000 0.00 0.00 33.46 2.69
5066 7110 7.333528 TGGACTATTTGCCATATTCTTGAAC 57.666 36.000 0.00 0.00 0.00 3.18
5067 7111 6.889177 TGGACTATTTGCCATATTCTTGAACA 59.111 34.615 0.00 0.00 0.00 3.18
5068 7112 7.560991 TGGACTATTTGCCATATTCTTGAACAT 59.439 33.333 0.00 0.00 0.00 2.71
5069 7113 8.416329 GGACTATTTGCCATATTCTTGAACATT 58.584 33.333 0.00 0.00 0.00 2.71
5070 7114 9.807649 GACTATTTGCCATATTCTTGAACATTT 57.192 29.630 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.278857 CTTCCATCGCCGGAGTCG 60.279 66.667 5.05 0.00 36.12 4.18
2 3 3.470888 CCCTTCCATCGCCGGAGT 61.471 66.667 5.05 0.00 36.12 3.85
3 4 4.918201 GCCCTTCCATCGCCGGAG 62.918 72.222 5.05 0.00 36.12 4.63
10 11 1.595382 CCGTCATCGCCCTTCCATC 60.595 63.158 0.00 0.00 35.54 3.51
11 12 2.505982 CCGTCATCGCCCTTCCAT 59.494 61.111 0.00 0.00 35.54 3.41
12 13 4.467084 GCCGTCATCGCCCTTCCA 62.467 66.667 0.00 0.00 35.54 3.53
35 36 0.952984 AACTGAAGCGAGCTGAAGGC 60.953 55.000 0.00 0.00 42.19 4.35
36 37 1.517242 AAACTGAAGCGAGCTGAAGG 58.483 50.000 0.00 0.00 0.00 3.46
37 38 3.242870 ACAAAAACTGAAGCGAGCTGAAG 60.243 43.478 0.00 2.13 0.00 3.02
38 39 2.682856 ACAAAAACTGAAGCGAGCTGAA 59.317 40.909 0.00 0.00 0.00 3.02
39 40 2.288666 ACAAAAACTGAAGCGAGCTGA 58.711 42.857 0.00 0.00 0.00 4.26
40 41 2.763249 ACAAAAACTGAAGCGAGCTG 57.237 45.000 0.00 0.00 0.00 4.24
41 42 3.467803 ACTACAAAAACTGAAGCGAGCT 58.532 40.909 0.00 0.00 0.00 4.09
42 43 3.661936 CGACTACAAAAACTGAAGCGAGC 60.662 47.826 0.00 0.00 0.00 5.03
43 44 3.489785 ACGACTACAAAAACTGAAGCGAG 59.510 43.478 0.00 0.00 0.00 5.03
44 45 3.450578 ACGACTACAAAAACTGAAGCGA 58.549 40.909 0.00 0.00 0.00 4.93
45 46 3.658342 CGACGACTACAAAAACTGAAGCG 60.658 47.826 0.00 0.00 0.00 4.68
46 47 3.244579 ACGACGACTACAAAAACTGAAGC 59.755 43.478 0.00 0.00 0.00 3.86
47 48 5.385396 AACGACGACTACAAAAACTGAAG 57.615 39.130 0.00 0.00 0.00 3.02
48 49 5.459762 CCTAACGACGACTACAAAAACTGAA 59.540 40.000 0.00 0.00 0.00 3.02
49 50 4.977963 CCTAACGACGACTACAAAAACTGA 59.022 41.667 0.00 0.00 0.00 3.41
50 51 4.741676 ACCTAACGACGACTACAAAAACTG 59.258 41.667 0.00 0.00 0.00 3.16
51 52 4.741676 CACCTAACGACGACTACAAAAACT 59.258 41.667 0.00 0.00 0.00 2.66
52 53 4.084900 CCACCTAACGACGACTACAAAAAC 60.085 45.833 0.00 0.00 0.00 2.43
53 54 4.050553 CCACCTAACGACGACTACAAAAA 58.949 43.478 0.00 0.00 0.00 1.94
54 55 3.068024 ACCACCTAACGACGACTACAAAA 59.932 43.478 0.00 0.00 0.00 2.44
55 56 2.622942 ACCACCTAACGACGACTACAAA 59.377 45.455 0.00 0.00 0.00 2.83
56 57 2.226437 GACCACCTAACGACGACTACAA 59.774 50.000 0.00 0.00 0.00 2.41
57 58 1.806542 GACCACCTAACGACGACTACA 59.193 52.381 0.00 0.00 0.00 2.74
58 59 2.079925 AGACCACCTAACGACGACTAC 58.920 52.381 0.00 0.00 0.00 2.73
59 60 2.479566 AGACCACCTAACGACGACTA 57.520 50.000 0.00 0.00 0.00 2.59
60 61 2.079925 GTAGACCACCTAACGACGACT 58.920 52.381 0.00 0.00 0.00 4.18
61 62 1.201965 CGTAGACCACCTAACGACGAC 60.202 57.143 0.00 0.00 35.43 4.34
62 63 1.078709 CGTAGACCACCTAACGACGA 58.921 55.000 0.00 0.00 35.43 4.20
63 64 0.097674 CCGTAGACCACCTAACGACG 59.902 60.000 0.00 0.00 33.84 5.12
64 65 1.453155 TCCGTAGACCACCTAACGAC 58.547 55.000 0.00 0.00 0.00 4.34
65 66 2.092753 AGATCCGTAGACCACCTAACGA 60.093 50.000 0.00 0.00 0.00 3.85
66 67 2.033049 CAGATCCGTAGACCACCTAACG 59.967 54.545 0.00 0.00 0.00 3.18
67 68 2.361438 CCAGATCCGTAGACCACCTAAC 59.639 54.545 0.00 0.00 0.00 2.34
68 69 2.242965 TCCAGATCCGTAGACCACCTAA 59.757 50.000 0.00 0.00 0.00 2.69
69 70 1.848388 TCCAGATCCGTAGACCACCTA 59.152 52.381 0.00 0.00 0.00 3.08
70 71 0.629596 TCCAGATCCGTAGACCACCT 59.370 55.000 0.00 0.00 0.00 4.00
71 72 1.341531 CATCCAGATCCGTAGACCACC 59.658 57.143 0.00 0.00 0.00 4.61
72 73 2.032620 ACATCCAGATCCGTAGACCAC 58.967 52.381 0.00 0.00 0.00 4.16
73 74 2.454336 ACATCCAGATCCGTAGACCA 57.546 50.000 0.00 0.00 0.00 4.02
74 75 5.470047 AATTACATCCAGATCCGTAGACC 57.530 43.478 0.00 0.00 0.00 3.85
75 76 7.787725 AAAAATTACATCCAGATCCGTAGAC 57.212 36.000 0.00 0.00 0.00 2.59
94 95 9.589111 AGTACAACGAACACCAAAAATAAAAAT 57.411 25.926 0.00 0.00 0.00 1.82
95 96 8.861101 CAGTACAACGAACACCAAAAATAAAAA 58.139 29.630 0.00 0.00 0.00 1.94
96 97 7.009357 GCAGTACAACGAACACCAAAAATAAAA 59.991 33.333 0.00 0.00 0.00 1.52
97 98 6.472808 GCAGTACAACGAACACCAAAAATAAA 59.527 34.615 0.00 0.00 0.00 1.40
98 99 5.972382 GCAGTACAACGAACACCAAAAATAA 59.028 36.000 0.00 0.00 0.00 1.40
99 100 5.505985 GGCAGTACAACGAACACCAAAAATA 60.506 40.000 0.00 0.00 0.00 1.40
100 101 4.356289 GCAGTACAACGAACACCAAAAAT 58.644 39.130 0.00 0.00 0.00 1.82
101 102 3.427773 GGCAGTACAACGAACACCAAAAA 60.428 43.478 0.00 0.00 0.00 1.94
102 103 2.097791 GGCAGTACAACGAACACCAAAA 59.902 45.455 0.00 0.00 0.00 2.44
103 104 1.671845 GGCAGTACAACGAACACCAAA 59.328 47.619 0.00 0.00 0.00 3.28
104 105 1.301423 GGCAGTACAACGAACACCAA 58.699 50.000 0.00 0.00 0.00 3.67
105 106 0.178301 TGGCAGTACAACGAACACCA 59.822 50.000 0.00 0.00 0.00 4.17
106 107 1.196808 CATGGCAGTACAACGAACACC 59.803 52.381 0.00 0.00 0.00 4.16
107 108 2.139917 TCATGGCAGTACAACGAACAC 58.860 47.619 0.00 0.00 0.00 3.32
108 109 2.535012 TCATGGCAGTACAACGAACA 57.465 45.000 0.00 0.00 0.00 3.18
109 110 3.435327 TCAATCATGGCAGTACAACGAAC 59.565 43.478 0.00 0.00 0.00 3.95
110 111 3.669536 TCAATCATGGCAGTACAACGAA 58.330 40.909 0.00 0.00 0.00 3.85
111 112 3.326836 TCAATCATGGCAGTACAACGA 57.673 42.857 0.00 0.00 0.00 3.85
112 113 3.684305 TCTTCAATCATGGCAGTACAACG 59.316 43.478 0.00 0.00 0.00 4.10
113 114 5.355071 TCATCTTCAATCATGGCAGTACAAC 59.645 40.000 0.00 0.00 0.00 3.32
114 115 5.499313 TCATCTTCAATCATGGCAGTACAA 58.501 37.500 0.00 0.00 0.00 2.41
115 116 5.101648 TCATCTTCAATCATGGCAGTACA 57.898 39.130 0.00 0.00 0.00 2.90
116 117 6.630444 AATCATCTTCAATCATGGCAGTAC 57.370 37.500 0.00 0.00 0.00 2.73
117 118 7.738847 TCTAATCATCTTCAATCATGGCAGTA 58.261 34.615 0.00 0.00 0.00 2.74
118 119 6.598503 TCTAATCATCTTCAATCATGGCAGT 58.401 36.000 0.00 0.00 0.00 4.40
119 120 7.689446 ATCTAATCATCTTCAATCATGGCAG 57.311 36.000 0.00 0.00 0.00 4.85
120 121 7.039993 CCAATCTAATCATCTTCAATCATGGCA 60.040 37.037 0.00 0.00 0.00 4.92
121 122 7.176165 TCCAATCTAATCATCTTCAATCATGGC 59.824 37.037 0.00 0.00 0.00 4.40
122 123 8.631480 TCCAATCTAATCATCTTCAATCATGG 57.369 34.615 0.00 0.00 0.00 3.66
124 125 9.863650 ACTTCCAATCTAATCATCTTCAATCAT 57.136 29.630 0.00 0.00 0.00 2.45
125 126 9.690913 AACTTCCAATCTAATCATCTTCAATCA 57.309 29.630 0.00 0.00 0.00 2.57
129 130 9.745018 AGAAAACTTCCAATCTAATCATCTTCA 57.255 29.630 0.00 0.00 0.00 3.02
131 132 9.745018 TCAGAAAACTTCCAATCTAATCATCTT 57.255 29.630 0.00 0.00 0.00 2.40
132 133 9.745018 TTCAGAAAACTTCCAATCTAATCATCT 57.255 29.630 0.00 0.00 0.00 2.90
168 169 9.817365 CAGAAAGACACAATTTTGATAGTACAG 57.183 33.333 0.00 0.00 0.00 2.74
174 175 9.567776 TTCCTACAGAAAGACACAATTTTGATA 57.432 29.630 0.00 0.00 0.00 2.15
224 226 6.088883 GGTGCAGTGTTTTAATATTTTCCACG 59.911 38.462 0.00 0.00 0.00 4.94
242 244 3.325293 CTGTCTCATAACAGGTGCAGT 57.675 47.619 0.00 0.00 42.42 4.40
253 255 7.039714 TCAGAGTTGCTTTCTTACTGTCTCATA 60.040 37.037 0.00 0.00 0.00 2.15
301 308 2.146342 AGCCTGTCAACTTCATTGTCG 58.854 47.619 0.00 0.00 39.54 4.35
554 564 0.035458 AGACTTCCGGTCCTGCTTTG 59.965 55.000 0.00 0.00 45.54 2.77
683 693 2.222819 GCACTTCGGTTAAGATTGCGAG 60.223 50.000 0.00 0.00 38.67 5.03
710 720 2.281762 GCAGGTCATCGACGTAACAATC 59.718 50.000 0.00 0.00 32.65 2.67
855 868 0.514255 CACTGTCACGGAGTTGCATG 59.486 55.000 0.00 0.00 41.61 4.06
862 875 2.886859 GTGTCACACTGTCACGGAG 58.113 57.895 0.00 0.00 28.02 4.63
900 930 0.395173 AGTTGCGGGTGTTCCACTTT 60.395 50.000 0.00 0.00 34.40 2.66
1038 1071 5.007724 CCAAGAAAGACCAATATTACCGAGC 59.992 44.000 0.00 0.00 0.00 5.03
1039 1072 5.007724 GCCAAGAAAGACCAATATTACCGAG 59.992 44.000 0.00 0.00 0.00 4.63
1041 1074 4.638421 TGCCAAGAAAGACCAATATTACCG 59.362 41.667 0.00 0.00 0.00 4.02
1042 1075 5.417580 TGTGCCAAGAAAGACCAATATTACC 59.582 40.000 0.00 0.00 0.00 2.85
1259 1320 1.959226 GGCGTCTTTTGTGAGCGGA 60.959 57.895 0.00 0.00 0.00 5.54
1385 1472 3.214123 CCGATACCGCCGAGTCCA 61.214 66.667 0.00 0.00 0.00 4.02
1398 1485 2.185350 CACCGAAGCAGCTCCGAT 59.815 61.111 0.92 0.00 0.00 4.18
1460 1547 2.258726 AAGCCCAAACGACGCCTTC 61.259 57.895 0.00 0.00 0.00 3.46
1514 1628 2.049156 CTGAACGAGCTGCCGACA 60.049 61.111 15.53 13.04 0.00 4.35
1549 1663 1.972198 CTCAAGGCGTGGTACCTGA 59.028 57.895 14.36 6.28 37.67 3.86
1640 1754 4.394078 CTCCGGACGAACGTCGCA 62.394 66.667 18.57 6.37 45.12 5.10
1703 1817 1.883732 CGAAGAGAAGACCGAGGCA 59.116 57.895 0.00 0.00 0.00 4.75
1864 1978 0.535335 GGAGACATACAAGCCGGACA 59.465 55.000 5.05 0.00 0.00 4.02
1968 2083 2.280592 GGGCGACAACCAAGACGT 60.281 61.111 0.00 0.00 0.00 4.34
2112 2227 2.671070 CGGCTCCAAGGTGATGGT 59.329 61.111 0.00 0.00 41.46 3.55
2171 2286 2.127118 GCCGAGTTCGACGAACGA 60.127 61.111 29.29 0.00 45.96 3.85
2234 2349 3.063084 GTCTGCCTCGACCCGACT 61.063 66.667 0.00 0.00 0.00 4.18
2606 2778 4.367023 GCCTACGCGACCACACCA 62.367 66.667 15.93 0.00 0.00 4.17
2640 2812 1.470979 CGTGCAGTACCCTCCATACAC 60.471 57.143 0.00 0.00 0.00 2.90
3471 3694 1.067974 TCTCCATGACACACGTCGTTT 59.932 47.619 0.00 0.00 45.80 3.60
3474 3711 0.456824 CCTCTCCATGACACACGTCG 60.457 60.000 0.00 0.00 45.80 5.12
3526 3765 8.981659 CAAATCTACAAAAGAGGGGGATAATTT 58.018 33.333 0.00 0.00 37.74 1.82
3527 3766 7.565029 CCAAATCTACAAAAGAGGGGGATAATT 59.435 37.037 0.00 0.00 37.74 1.40
3545 3784 4.662278 CCTTCTGGTTTGACCCAAATCTA 58.338 43.478 4.59 0.00 37.50 1.98
3622 3861 6.577103 AGTCAGATCGCATTCTTCAGAAATA 58.423 36.000 0.00 0.00 37.61 1.40
3678 3917 4.458397 CATGATGCATAGTTCCTTCAGGT 58.542 43.478 0.00 0.00 36.34 4.00
3682 3921 8.798859 ATTATACCATGATGCATAGTTCCTTC 57.201 34.615 0.00 0.00 0.00 3.46
3704 3943 7.147794 TGGAGAATCGGTACAAGAGCTTAATTA 60.148 37.037 0.00 0.00 34.37 1.40
3711 3950 2.961526 TGGAGAATCGGTACAAGAGC 57.038 50.000 0.00 0.00 34.37 4.09
3806 4045 4.275196 GGTCAAAAACTCCTAACTGGTCAC 59.725 45.833 0.00 0.00 37.07 3.67
3840 4079 5.529581 TCACATAAATGATCTCGCACCTA 57.470 39.130 0.00 0.00 0.00 3.08
3879 4118 4.684485 GCTAAACTCATGCATGTACCTCCT 60.684 45.833 25.43 8.25 0.00 3.69
3933 4172 2.092212 GCTTGAAATCAGGGGGAGATGA 60.092 50.000 0.00 0.00 0.00 2.92
3939 4178 0.251742 TGGTGCTTGAAATCAGGGGG 60.252 55.000 0.00 0.00 0.00 5.40
3963 4202 7.437713 ACCCATAGATACTGAGTTGATTCAA 57.562 36.000 0.00 0.00 0.00 2.69
3966 4205 6.986817 CGAAACCCATAGATACTGAGTTGATT 59.013 38.462 0.00 0.00 0.00 2.57
3967 4206 6.463049 CCGAAACCCATAGATACTGAGTTGAT 60.463 42.308 0.00 0.00 0.00 2.57
3969 4208 5.050490 CCGAAACCCATAGATACTGAGTTG 58.950 45.833 0.00 0.00 0.00 3.16
3971 4210 3.641906 CCCGAAACCCATAGATACTGAGT 59.358 47.826 0.00 0.00 0.00 3.41
3994 4233 5.649831 GCATACCTCAGGAATTTGTCTTCTT 59.350 40.000 0.00 0.00 0.00 2.52
4008 4247 2.271800 GACGTTTCTGGCATACCTCAG 58.728 52.381 0.00 0.00 36.63 3.35
4080 4319 1.608590 AGTGGGTTTGCATTTCTCACG 59.391 47.619 9.52 0.00 0.00 4.35
4199 4438 5.408299 CCTTCGATCCATATTAATTGTCGCA 59.592 40.000 0.00 0.00 0.00 5.10
4220 4459 6.012858 TGTGTATTTTGAGATGGTACTCCCTT 60.013 38.462 0.00 0.00 36.22 3.95
4251 4490 2.217393 GCACTGCTTAATCATCGACGAG 59.783 50.000 3.01 0.00 0.00 4.18
4259 4498 5.003160 ACTGTTGTATGCACTGCTTAATCA 58.997 37.500 1.98 1.08 0.00 2.57
4266 4505 2.350522 AGCTACTGTTGTATGCACTGC 58.649 47.619 0.00 0.00 0.00 4.40
4315 4554 6.770746 TCATACTCAACTTAGTACACCCTC 57.229 41.667 0.00 0.00 34.87 4.30
4387 5655 1.462731 AAGCAAACATCGGCTGGCAA 61.463 50.000 1.08 0.00 40.93 4.52
4393 6325 1.052287 CAACGAAAGCAAACATCGGC 58.948 50.000 0.00 0.00 40.71 5.54
4394 6326 2.043411 CACAACGAAAGCAAACATCGG 58.957 47.619 0.00 0.00 40.71 4.18
4395 6327 2.980586 TCACAACGAAAGCAAACATCG 58.019 42.857 0.00 0.00 42.05 3.84
4396 6328 5.332506 CCATTTCACAACGAAAGCAAACATC 60.333 40.000 0.00 0.00 46.57 3.06
4397 6329 4.507388 CCATTTCACAACGAAAGCAAACAT 59.493 37.500 0.00 0.00 46.57 2.71
4406 6338 3.998099 TGCAATCCATTTCACAACGAA 57.002 38.095 0.00 0.00 0.00 3.85
4408 6340 3.641648 ACTTGCAATCCATTTCACAACG 58.358 40.909 0.00 0.00 0.00 4.10
4409 6341 5.294060 ACAAACTTGCAATCCATTTCACAAC 59.706 36.000 0.00 0.00 0.00 3.32
4411 6343 5.021033 ACAAACTTGCAATCCATTTCACA 57.979 34.783 0.00 0.00 0.00 3.58
4414 6346 6.701400 AGTGTTACAAACTTGCAATCCATTTC 59.299 34.615 0.00 0.00 0.00 2.17
4416 6348 5.984926 CAGTGTTACAAACTTGCAATCCATT 59.015 36.000 0.00 0.00 0.00 3.16
4417 6349 5.509501 CCAGTGTTACAAACTTGCAATCCAT 60.510 40.000 0.00 0.00 0.00 3.41
4422 6354 2.478709 CGCCAGTGTTACAAACTTGCAA 60.479 45.455 0.00 0.00 36.39 4.08
4424 6356 1.332375 TCGCCAGTGTTACAAACTTGC 59.668 47.619 0.00 0.00 33.99 4.01
4425 6357 3.181505 TGTTCGCCAGTGTTACAAACTTG 60.182 43.478 0.00 0.00 0.00 3.16
4427 6359 2.634600 TGTTCGCCAGTGTTACAAACT 58.365 42.857 0.00 0.00 0.00 2.66
4429 6361 3.187637 GCTATGTTCGCCAGTGTTACAAA 59.812 43.478 0.00 0.00 0.00 2.83
4431 6363 2.343101 GCTATGTTCGCCAGTGTTACA 58.657 47.619 0.00 0.00 0.00 2.41
4434 6366 0.320421 ACGCTATGTTCGCCAGTGTT 60.320 50.000 0.00 0.00 28.93 3.32
4438 6370 2.120232 CTAAGACGCTATGTTCGCCAG 58.880 52.381 0.00 0.00 0.00 4.85
4439 6371 1.801395 GCTAAGACGCTATGTTCGCCA 60.801 52.381 0.00 0.00 0.00 5.69
4441 6373 0.853419 GGCTAAGACGCTATGTTCGC 59.147 55.000 0.00 0.00 0.00 4.70
4442 6374 1.121240 CGGCTAAGACGCTATGTTCG 58.879 55.000 0.00 0.00 0.00 3.95
4443 6375 2.486951 TCGGCTAAGACGCTATGTTC 57.513 50.000 0.00 0.00 32.07 3.18
4445 6377 2.545952 CCATTCGGCTAAGACGCTATGT 60.546 50.000 0.00 0.00 32.07 2.29
4446 6378 2.061773 CCATTCGGCTAAGACGCTATG 58.938 52.381 0.00 0.00 32.07 2.23
4450 6382 0.459585 TGTCCATTCGGCTAAGACGC 60.460 55.000 0.00 0.00 32.07 5.19
4451 6383 2.225068 ATGTCCATTCGGCTAAGACG 57.775 50.000 0.00 0.00 34.09 4.18
4452 6384 3.001330 CGAAATGTCCATTCGGCTAAGAC 59.999 47.826 0.99 0.00 0.00 3.01
4454 6386 2.936498 ACGAAATGTCCATTCGGCTAAG 59.064 45.455 12.53 0.00 0.00 2.18
4455 6387 2.675844 CACGAAATGTCCATTCGGCTAA 59.324 45.455 12.53 0.00 0.00 3.09
4457 6389 1.086696 CACGAAATGTCCATTCGGCT 58.913 50.000 12.53 0.00 0.00 5.52
4458 6390 0.523335 GCACGAAATGTCCATTCGGC 60.523 55.000 12.53 9.19 0.00 5.54
4459 6391 0.801872 TGCACGAAATGTCCATTCGG 59.198 50.000 12.53 3.91 0.00 4.30
4462 6394 2.485426 CAGTCTGCACGAAATGTCCATT 59.515 45.455 0.00 0.00 0.00 3.16
4464 6396 1.069978 TCAGTCTGCACGAAATGTCCA 59.930 47.619 0.00 0.00 0.00 4.02
4466 6398 2.543848 TGTTCAGTCTGCACGAAATGTC 59.456 45.455 0.00 0.00 0.00 3.06
4495 6451 9.599322 GATGTTATGTCAAAAGTAAGTGTTCAG 57.401 33.333 0.00 0.00 0.00 3.02
4496 6452 9.114952 TGATGTTATGTCAAAAGTAAGTGTTCA 57.885 29.630 0.00 0.00 0.00 3.18
4500 6456 9.764870 CAGATGATGTTATGTCAAAAGTAAGTG 57.235 33.333 0.00 0.00 0.00 3.16
4501 6457 9.507329 ACAGATGATGTTATGTCAAAAGTAAGT 57.493 29.630 0.00 0.00 39.96 2.24
4502 6458 9.979270 GACAGATGATGTTATGTCAAAAGTAAG 57.021 33.333 0.00 0.00 44.17 2.34
4503 6459 9.725019 AGACAGATGATGTTATGTCAAAAGTAA 57.275 29.630 6.91 0.00 44.17 2.24
4504 6460 9.154847 CAGACAGATGATGTTATGTCAAAAGTA 57.845 33.333 6.91 0.00 44.17 2.24
4507 6463 7.984422 ACAGACAGATGATGTTATGTCAAAA 57.016 32.000 6.91 0.00 44.17 2.44
4509 6465 6.372381 CCAACAGACAGATGATGTTATGTCAA 59.628 38.462 6.91 0.00 44.17 3.18
4511 6467 6.036517 GTCCAACAGACAGATGATGTTATGTC 59.963 42.308 7.51 0.00 44.17 3.06
4512 6468 5.877012 GTCCAACAGACAGATGATGTTATGT 59.123 40.000 7.51 0.00 44.17 2.29
4513 6469 6.355397 GTCCAACAGACAGATGATGTTATG 57.645 41.667 7.51 4.26 44.17 1.90
4526 6482 5.102313 CCAAAAAGAACAAGTCCAACAGAC 58.898 41.667 0.00 0.00 46.71 3.51
4527 6483 4.770010 ACCAAAAAGAACAAGTCCAACAGA 59.230 37.500 0.00 0.00 0.00 3.41
4528 6484 5.072040 ACCAAAAAGAACAAGTCCAACAG 57.928 39.130 0.00 0.00 0.00 3.16
4530 6486 6.859017 TCTTACCAAAAAGAACAAGTCCAAC 58.141 36.000 0.00 0.00 32.59 3.77
4533 6489 7.039313 ACATCTTACCAAAAAGAACAAGTCC 57.961 36.000 0.00 0.00 38.90 3.85
4535 6491 8.410912 GGTTACATCTTACCAAAAAGAACAAGT 58.589 33.333 0.00 0.00 38.90 3.16
4536 6492 8.410141 TGGTTACATCTTACCAAAAAGAACAAG 58.590 33.333 0.00 0.00 41.30 3.16
4537 6493 8.294954 TGGTTACATCTTACCAAAAAGAACAA 57.705 30.769 0.00 0.00 41.30 2.83
4538 6494 7.013846 CCTGGTTACATCTTACCAAAAAGAACA 59.986 37.037 0.00 0.00 43.46 3.18
4539 6495 7.229907 TCCTGGTTACATCTTACCAAAAAGAAC 59.770 37.037 0.00 0.00 43.46 3.01
4540 6496 7.291566 TCCTGGTTACATCTTACCAAAAAGAA 58.708 34.615 0.00 0.00 43.46 2.52
4542 6498 7.393234 TGATCCTGGTTACATCTTACCAAAAAG 59.607 37.037 0.00 0.00 43.46 2.27
4543 6499 7.235079 TGATCCTGGTTACATCTTACCAAAAA 58.765 34.615 0.00 0.00 43.46 1.94
4544 6500 6.785076 TGATCCTGGTTACATCTTACCAAAA 58.215 36.000 0.00 0.00 43.46 2.44
4545 6501 6.381498 TGATCCTGGTTACATCTTACCAAA 57.619 37.500 0.00 0.00 43.46 3.28
4547 6503 6.575244 AATGATCCTGGTTACATCTTACCA 57.425 37.500 0.00 0.00 41.97 3.25
4548 6504 7.339466 ACAAAATGATCCTGGTTACATCTTACC 59.661 37.037 0.00 0.00 34.93 2.85
4549 6505 8.281212 ACAAAATGATCCTGGTTACATCTTAC 57.719 34.615 0.00 0.00 0.00 2.34
4550 6506 8.877864 AACAAAATGATCCTGGTTACATCTTA 57.122 30.769 0.00 0.00 0.00 2.10
4551 6507 7.781324 AACAAAATGATCCTGGTTACATCTT 57.219 32.000 0.00 0.00 0.00 2.40
4552 6508 7.339466 GGTAACAAAATGATCCTGGTTACATCT 59.661 37.037 17.21 0.00 41.22 2.90
4553 6509 7.416326 GGGTAACAAAATGATCCTGGTTACATC 60.416 40.741 17.21 9.91 41.22 3.06
4558 6514 5.010708 AGGGTAACAAAATGATCCTGGTT 57.989 39.130 0.00 0.00 39.74 3.67
4559 6515 4.675063 AGGGTAACAAAATGATCCTGGT 57.325 40.909 0.00 0.00 39.74 4.00
4560 6516 6.001449 TCTAGGGTAACAAAATGATCCTGG 57.999 41.667 0.00 0.00 39.74 4.45
4562 6518 6.122964 GCTTCTAGGGTAACAAAATGATCCT 58.877 40.000 0.00 0.00 39.74 3.24
4563 6519 5.885912 TGCTTCTAGGGTAACAAAATGATCC 59.114 40.000 0.00 0.00 39.74 3.36
4564 6520 6.038714 CCTGCTTCTAGGGTAACAAAATGATC 59.961 42.308 0.00 0.00 39.74 2.92
4566 6522 5.253330 CCTGCTTCTAGGGTAACAAAATGA 58.747 41.667 0.00 0.00 39.74 2.57
4567 6523 5.567138 CCTGCTTCTAGGGTAACAAAATG 57.433 43.478 0.00 0.00 39.74 2.32
4578 6534 1.344763 CCCGAATACCCTGCTTCTAGG 59.655 57.143 0.00 0.00 37.59 3.02
4579 6535 1.270358 GCCCGAATACCCTGCTTCTAG 60.270 57.143 0.00 0.00 0.00 2.43
4581 6537 0.983378 AGCCCGAATACCCTGCTTCT 60.983 55.000 0.00 0.00 0.00 2.85
4582 6538 0.533085 GAGCCCGAATACCCTGCTTC 60.533 60.000 0.00 0.00 31.23 3.86
4583 6539 1.527370 GAGCCCGAATACCCTGCTT 59.473 57.895 0.00 0.00 31.23 3.91
4585 6541 2.111251 GGAGCCCGAATACCCTGC 59.889 66.667 0.00 0.00 0.00 4.85
4586 6542 2.829592 GGGAGCCCGAATACCCTG 59.170 66.667 0.00 0.00 39.28 4.45
4587 6543 2.703430 AGGGAGCCCGAATACCCT 59.297 61.111 0.00 0.00 46.64 4.34
4588 6544 0.761702 TACAGGGAGCCCGAATACCC 60.762 60.000 0.00 0.00 41.95 3.69
4590 6546 3.679083 GCATATACAGGGAGCCCGAATAC 60.679 52.174 0.00 0.00 41.95 1.89
4591 6547 2.500098 GCATATACAGGGAGCCCGAATA 59.500 50.000 0.00 0.55 41.95 1.75
4592 6548 1.279271 GCATATACAGGGAGCCCGAAT 59.721 52.381 0.00 0.00 41.95 3.34
4593 6549 0.685097 GCATATACAGGGAGCCCGAA 59.315 55.000 0.00 0.00 41.95 4.30
4595 6551 0.320771 GTGCATATACAGGGAGCCCG 60.321 60.000 0.00 0.00 41.95 6.13
4597 6553 0.320771 CGGTGCATATACAGGGAGCC 60.321 60.000 0.00 0.00 0.00 4.70
4598 6554 0.951040 GCGGTGCATATACAGGGAGC 60.951 60.000 0.00 0.00 0.00 4.70
4599 6555 0.667487 CGCGGTGCATATACAGGGAG 60.667 60.000 0.00 0.00 32.08 4.30
4600 6556 1.365999 CGCGGTGCATATACAGGGA 59.634 57.895 0.00 0.00 32.08 4.20
4601 6557 2.317609 GCGCGGTGCATATACAGGG 61.318 63.158 8.83 0.00 45.45 4.45
4602 6558 3.244105 GCGCGGTGCATATACAGG 58.756 61.111 8.83 0.00 45.45 4.00
4611 6567 2.725275 TTACTTGCTTTGCGCGGTGC 62.725 55.000 8.83 6.58 43.27 5.01
4612 6568 0.317436 TTTACTTGCTTTGCGCGGTG 60.317 50.000 8.83 0.00 43.27 4.94
4613 6569 0.382515 TTTTACTTGCTTTGCGCGGT 59.617 45.000 8.83 0.00 43.27 5.68
4614 6570 1.052287 CTTTTACTTGCTTTGCGCGG 58.948 50.000 8.83 0.00 43.27 6.46
4615 6571 0.430858 GCTTTTACTTGCTTTGCGCG 59.569 50.000 0.00 0.00 43.27 6.86
4617 6573 1.269517 TGGGCTTTTACTTGCTTTGCG 60.270 47.619 0.00 0.00 0.00 4.85
4618 6574 2.524569 TGGGCTTTTACTTGCTTTGC 57.475 45.000 0.00 0.00 0.00 3.68
4619 6575 4.692228 TCTTTGGGCTTTTACTTGCTTTG 58.308 39.130 0.00 0.00 0.00 2.77
4621 6577 5.551305 ATTCTTTGGGCTTTTACTTGCTT 57.449 34.783 0.00 0.00 0.00 3.91
4622 6578 5.299949 CAATTCTTTGGGCTTTTACTTGCT 58.700 37.500 0.00 0.00 0.00 3.91
4624 6580 5.050159 GTGCAATTCTTTGGGCTTTTACTTG 60.050 40.000 0.00 0.00 33.22 3.16
4626 6582 4.503123 GGTGCAATTCTTTGGGCTTTTACT 60.503 41.667 0.00 0.00 33.22 2.24
4627 6583 3.745975 GGTGCAATTCTTTGGGCTTTTAC 59.254 43.478 0.00 0.00 33.22 2.01
4628 6584 3.553922 CGGTGCAATTCTTTGGGCTTTTA 60.554 43.478 0.00 0.00 33.22 1.52
4629 6585 2.806382 CGGTGCAATTCTTTGGGCTTTT 60.806 45.455 0.00 0.00 33.22 2.27
4630 6586 1.270252 CGGTGCAATTCTTTGGGCTTT 60.270 47.619 0.00 0.00 33.22 3.51
4631 6587 0.318120 CGGTGCAATTCTTTGGGCTT 59.682 50.000 0.00 0.00 33.22 4.35
4632 6588 0.827507 ACGGTGCAATTCTTTGGGCT 60.828 50.000 0.00 0.00 33.22 5.19
4633 6589 0.388520 GACGGTGCAATTCTTTGGGC 60.389 55.000 0.00 0.00 33.22 5.36
4634 6590 0.109781 CGACGGTGCAATTCTTTGGG 60.110 55.000 0.00 0.00 33.22 4.12
4635 6591 0.109781 CCGACGGTGCAATTCTTTGG 60.110 55.000 5.48 0.00 33.22 3.28
4636 6592 0.871722 TCCGACGGTGCAATTCTTTG 59.128 50.000 14.79 0.00 35.85 2.77
4637 6593 1.468520 CATCCGACGGTGCAATTCTTT 59.531 47.619 14.79 0.00 0.00 2.52
4638 6594 1.086696 CATCCGACGGTGCAATTCTT 58.913 50.000 14.79 0.00 0.00 2.52
4639 6595 0.249120 TCATCCGACGGTGCAATTCT 59.751 50.000 14.79 0.00 0.00 2.40
4640 6596 0.373716 GTCATCCGACGGTGCAATTC 59.626 55.000 14.79 0.00 31.07 2.17
4643 6599 0.533032 TATGTCATCCGACGGTGCAA 59.467 50.000 14.79 0.00 45.80 4.08
4644 6600 0.179121 GTATGTCATCCGACGGTGCA 60.179 55.000 14.79 13.05 45.80 4.57
4646 6602 1.404035 TGAGTATGTCATCCGACGGTG 59.596 52.381 14.79 11.59 45.80 4.94
4647 6603 1.404391 GTGAGTATGTCATCCGACGGT 59.596 52.381 14.79 0.00 45.80 4.83
4648 6604 1.404035 TGTGAGTATGTCATCCGACGG 59.596 52.381 7.84 7.84 45.80 4.79
4649 6605 2.451132 GTGTGAGTATGTCATCCGACG 58.549 52.381 0.00 0.00 45.80 5.12
4651 6607 2.427095 CAGGTGTGAGTATGTCATCCGA 59.573 50.000 0.00 0.00 37.56 4.55
4652 6608 2.427095 TCAGGTGTGAGTATGTCATCCG 59.573 50.000 0.00 0.00 37.56 4.18
4653 6609 4.471904 TTCAGGTGTGAGTATGTCATCC 57.528 45.455 0.00 0.00 37.56 3.51
4655 6611 5.012046 TCTGTTTCAGGTGTGAGTATGTCAT 59.988 40.000 0.00 0.00 32.77 3.06
4656 6612 4.343814 TCTGTTTCAGGTGTGAGTATGTCA 59.656 41.667 0.00 0.00 32.98 3.58
4658 6614 4.955811 TCTGTTTCAGGTGTGAGTATGT 57.044 40.909 0.00 0.00 32.98 2.29
4659 6615 5.527214 TGTTTCTGTTTCAGGTGTGAGTATG 59.473 40.000 0.00 0.00 32.98 2.39
4660 6616 5.527582 GTGTTTCTGTTTCAGGTGTGAGTAT 59.472 40.000 0.00 0.00 32.98 2.12
4661 6617 4.873827 GTGTTTCTGTTTCAGGTGTGAGTA 59.126 41.667 0.00 0.00 32.98 2.59
4662 6618 3.689649 GTGTTTCTGTTTCAGGTGTGAGT 59.310 43.478 0.00 0.00 32.98 3.41
4663 6619 3.065371 GGTGTTTCTGTTTCAGGTGTGAG 59.935 47.826 0.00 0.00 32.98 3.51
4665 6621 2.099098 GGGTGTTTCTGTTTCAGGTGTG 59.901 50.000 0.00 0.00 31.51 3.82
4667 6623 2.374184 TGGGTGTTTCTGTTTCAGGTG 58.626 47.619 0.00 0.00 31.51 4.00
4669 6625 2.757868 TGTTGGGTGTTTCTGTTTCAGG 59.242 45.455 0.00 0.00 31.51 3.86
4670 6626 3.443681 AGTGTTGGGTGTTTCTGTTTCAG 59.556 43.478 0.00 0.00 0.00 3.02
4671 6627 3.426615 AGTGTTGGGTGTTTCTGTTTCA 58.573 40.909 0.00 0.00 0.00 2.69
4672 6628 4.638865 ACTAGTGTTGGGTGTTTCTGTTTC 59.361 41.667 0.00 0.00 0.00 2.78
4674 6630 4.080526 AGACTAGTGTTGGGTGTTTCTGTT 60.081 41.667 0.00 0.00 0.00 3.16
4675 6631 3.454812 AGACTAGTGTTGGGTGTTTCTGT 59.545 43.478 0.00 0.00 0.00 3.41
4676 6632 3.809832 CAGACTAGTGTTGGGTGTTTCTG 59.190 47.826 0.00 0.00 0.00 3.02
4677 6633 3.744530 GCAGACTAGTGTTGGGTGTTTCT 60.745 47.826 0.00 0.00 0.00 2.52
4678 6634 2.548480 GCAGACTAGTGTTGGGTGTTTC 59.452 50.000 0.00 0.00 0.00 2.78
4679 6635 2.092646 TGCAGACTAGTGTTGGGTGTTT 60.093 45.455 0.00 0.00 0.00 2.83
4680 6636 1.488812 TGCAGACTAGTGTTGGGTGTT 59.511 47.619 0.00 0.00 0.00 3.32
4683 6639 3.508845 ATTTGCAGACTAGTGTTGGGT 57.491 42.857 0.00 0.00 0.00 4.51
4684 6640 4.853924 AAATTTGCAGACTAGTGTTGGG 57.146 40.909 0.00 0.00 0.00 4.12
4685 6641 6.312399 TGTAAATTTGCAGACTAGTGTTGG 57.688 37.500 0.00 0.00 0.00 3.77
4687 6643 6.714810 TGGATGTAAATTTGCAGACTAGTGTT 59.285 34.615 14.39 0.00 0.00 3.32
4688 6644 6.237901 TGGATGTAAATTTGCAGACTAGTGT 58.762 36.000 14.39 0.00 0.00 3.55
4689 6645 6.741992 TGGATGTAAATTTGCAGACTAGTG 57.258 37.500 14.39 0.00 0.00 2.74
4690 6646 6.714810 TGTTGGATGTAAATTTGCAGACTAGT 59.285 34.615 14.39 0.00 0.00 2.57
4693 6649 6.594788 ATGTTGGATGTAAATTTGCAGACT 57.405 33.333 14.39 0.00 0.00 3.24
4694 6650 8.028938 ACTAATGTTGGATGTAAATTTGCAGAC 58.971 33.333 14.39 9.86 0.00 3.51
4695 6651 8.121305 ACTAATGTTGGATGTAAATTTGCAGA 57.879 30.769 14.39 0.00 0.00 4.26
4696 6652 8.246180 AGACTAATGTTGGATGTAAATTTGCAG 58.754 33.333 14.39 0.11 0.00 4.41
4698 6654 8.028938 ACAGACTAATGTTGGATGTAAATTTGC 58.971 33.333 0.00 0.00 0.00 3.68
4707 6663 9.702726 CGTAAATTTACAGACTAATGTTGGATG 57.297 33.333 24.27 2.32 34.56 3.51
4708 6664 8.395633 GCGTAAATTTACAGACTAATGTTGGAT 58.604 33.333 24.27 0.00 34.56 3.41
4710 6666 7.748847 AGCGTAAATTTACAGACTAATGTTGG 58.251 34.615 24.27 7.63 34.56 3.77
4711 6667 9.901724 CTAGCGTAAATTTACAGACTAATGTTG 57.098 33.333 24.27 7.79 34.56 3.33
4712 6668 8.601476 GCTAGCGTAAATTTACAGACTAATGTT 58.399 33.333 24.27 8.93 34.56 2.71
4713 6669 7.762615 TGCTAGCGTAAATTTACAGACTAATGT 59.237 33.333 24.27 3.96 37.19 2.71
4714 6670 8.126871 TGCTAGCGTAAATTTACAGACTAATG 57.873 34.615 24.27 13.44 33.28 1.90
4715 6671 7.980099 ACTGCTAGCGTAAATTTACAGACTAAT 59.020 33.333 24.27 7.37 33.28 1.73
4717 6673 6.750501 CACTGCTAGCGTAAATTTACAGACTA 59.249 38.462 24.27 19.60 33.28 2.59
4718 6674 5.577164 CACTGCTAGCGTAAATTTACAGACT 59.423 40.000 24.27 19.55 33.28 3.24
4719 6675 5.347907 ACACTGCTAGCGTAAATTTACAGAC 59.652 40.000 24.27 14.54 33.28 3.51
4720 6676 5.475719 ACACTGCTAGCGTAAATTTACAGA 58.524 37.500 24.27 10.33 33.28 3.41
4721 6677 5.779806 ACACTGCTAGCGTAAATTTACAG 57.220 39.130 24.27 18.05 33.28 2.74
4722 6678 7.762615 AGAATACACTGCTAGCGTAAATTTACA 59.237 33.333 24.27 7.70 33.28 2.41
4723 6679 8.128016 AGAATACACTGCTAGCGTAAATTTAC 57.872 34.615 16.87 16.87 0.00 2.01
4725 6681 7.042335 AGAGAATACACTGCTAGCGTAAATTT 58.958 34.615 10.77 0.00 0.00 1.82
4726 6682 6.574350 AGAGAATACACTGCTAGCGTAAATT 58.426 36.000 10.77 12.51 0.00 1.82
4727 6683 6.150396 AGAGAATACACTGCTAGCGTAAAT 57.850 37.500 10.77 5.43 0.00 1.40
4730 6686 3.564644 GGAGAGAATACACTGCTAGCGTA 59.435 47.826 10.77 6.83 0.00 4.42
4731 6687 2.359531 GGAGAGAATACACTGCTAGCGT 59.640 50.000 10.77 8.30 0.00 5.07
4732 6688 2.359214 TGGAGAGAATACACTGCTAGCG 59.641 50.000 10.77 7.61 0.00 4.26
4734 6690 4.642437 TCACTGGAGAGAATACACTGCTAG 59.358 45.833 0.00 0.00 0.00 3.42
4737 6693 3.876274 TCACTGGAGAGAATACACTGC 57.124 47.619 0.00 0.00 0.00 4.40
4739 6695 7.667575 ATATGTTCACTGGAGAGAATACACT 57.332 36.000 0.00 0.00 0.00 3.55
4740 6696 8.607459 CAAATATGTTCACTGGAGAGAATACAC 58.393 37.037 0.00 0.00 0.00 2.90
4742 6698 8.723942 ACAAATATGTTCACTGGAGAGAATAC 57.276 34.615 0.00 0.00 35.91 1.89
4744 6700 9.553064 GATACAAATATGTTCACTGGAGAGAAT 57.447 33.333 0.00 0.00 41.05 2.40
4746 6702 7.419057 GGGATACAAATATGTTCACTGGAGAGA 60.419 40.741 0.00 0.00 41.05 3.10
4747 6703 6.708054 GGGATACAAATATGTTCACTGGAGAG 59.292 42.308 0.00 0.00 41.05 3.20
4748 6704 6.409234 GGGGATACAAATATGTTCACTGGAGA 60.409 42.308 0.00 0.00 41.05 3.71
4750 6706 5.192722 TGGGGATACAAATATGTTCACTGGA 59.807 40.000 0.00 0.00 41.05 3.86
4751 6707 5.299279 GTGGGGATACAAATATGTTCACTGG 59.701 44.000 0.00 0.00 41.05 4.00
4752 6708 6.122277 AGTGGGGATACAAATATGTTCACTG 58.878 40.000 0.00 0.00 41.05 3.66
4753 6709 6.327386 AGTGGGGATACAAATATGTTCACT 57.673 37.500 0.00 0.00 41.05 3.41
4754 6710 5.531287 GGAGTGGGGATACAAATATGTTCAC 59.469 44.000 0.00 0.00 41.05 3.18
4757 6713 5.725551 TGGAGTGGGGATACAAATATGTT 57.274 39.130 0.00 0.00 41.05 2.71
4759 6715 7.416964 TTTTTGGAGTGGGGATACAAATATG 57.583 36.000 0.00 0.00 30.73 1.78
4760 6716 7.623278 ACATTTTTGGAGTGGGGATACAAATAT 59.377 33.333 0.00 0.00 30.73 1.28
4762 6718 5.784906 ACATTTTTGGAGTGGGGATACAAAT 59.215 36.000 0.00 0.00 30.73 2.32
4763 6719 5.151454 ACATTTTTGGAGTGGGGATACAAA 58.849 37.500 0.00 0.00 39.74 2.83
4764 6720 4.746466 ACATTTTTGGAGTGGGGATACAA 58.254 39.130 0.00 0.00 39.74 2.41
4765 6721 4.396357 ACATTTTTGGAGTGGGGATACA 57.604 40.909 0.00 0.00 39.74 2.29
4766 6722 6.844097 TTAACATTTTTGGAGTGGGGATAC 57.156 37.500 0.00 0.00 0.00 2.24
4767 6723 7.290248 TGTTTTAACATTTTTGGAGTGGGGATA 59.710 33.333 0.00 0.00 33.17 2.59
4768 6724 6.100424 TGTTTTAACATTTTTGGAGTGGGGAT 59.900 34.615 0.00 0.00 33.17 3.85
4770 6726 5.675538 TGTTTTAACATTTTTGGAGTGGGG 58.324 37.500 0.00 0.00 33.17 4.96
4771 6727 7.617041 TTTGTTTTAACATTTTTGGAGTGGG 57.383 32.000 0.00 0.00 38.95 4.61
4807 6851 5.970289 TGGCAATATAATTGGTTGGGGATA 58.030 37.500 2.11 0.00 0.00 2.59
4808 6852 4.825445 TGGCAATATAATTGGTTGGGGAT 58.175 39.130 2.11 0.00 0.00 3.85
4809 6853 4.271807 TGGCAATATAATTGGTTGGGGA 57.728 40.909 2.11 0.00 0.00 4.81
4810 6854 4.702831 GTTGGCAATATAATTGGTTGGGG 58.297 43.478 1.92 0.00 0.00 4.96
4811 6855 4.367450 CGTTGGCAATATAATTGGTTGGG 58.633 43.478 1.92 0.00 0.00 4.12
4812 6856 3.801594 GCGTTGGCAATATAATTGGTTGG 59.198 43.478 1.92 0.00 39.62 3.77
4813 6857 3.485378 CGCGTTGGCAATATAATTGGTTG 59.515 43.478 1.92 0.00 39.92 3.77
4814 6858 3.490078 CCGCGTTGGCAATATAATTGGTT 60.490 43.478 4.92 0.00 39.92 3.67
4815 6859 2.034053 CCGCGTTGGCAATATAATTGGT 59.966 45.455 4.92 0.00 39.92 3.67
4828 6872 0.096976 CTAAGATTGTGCCGCGTTGG 59.903 55.000 4.92 0.00 42.50 3.77
4831 6875 0.533491 TACCTAAGATTGTGCCGCGT 59.467 50.000 4.92 0.00 0.00 6.01
4833 6877 3.991367 AGTATACCTAAGATTGTGCCGC 58.009 45.455 0.00 0.00 0.00 6.53
4889 6933 0.322456 TCAGGGCCATTGCACAGTAC 60.322 55.000 6.18 0.00 46.13 2.73
4988 7032 8.472683 AACGTTCACAAATTCATGAAAGAAAA 57.527 26.923 13.09 0.18 37.62 2.29
4990 7034 9.743057 ATAAACGTTCACAAATTCATGAAAGAA 57.257 25.926 13.09 8.96 37.62 2.52
4992 7036 7.946237 GCATAAACGTTCACAAATTCATGAAAG 59.054 33.333 13.09 8.19 39.36 2.62
4996 7040 6.687653 TGCATAAACGTTCACAAATTCATG 57.312 33.333 0.00 0.00 0.00 3.07
4997 7041 7.814107 AGATTGCATAAACGTTCACAAATTCAT 59.186 29.630 0.00 0.00 0.00 2.57
4998 7042 7.114670 CAGATTGCATAAACGTTCACAAATTCA 59.885 33.333 0.00 0.00 0.00 2.57
4999 7043 7.114811 ACAGATTGCATAAACGTTCACAAATTC 59.885 33.333 0.00 0.48 0.00 2.17
5000 7044 6.922957 ACAGATTGCATAAACGTTCACAAATT 59.077 30.769 0.00 0.00 0.00 1.82
5001 7045 6.363088 CACAGATTGCATAAACGTTCACAAAT 59.637 34.615 0.00 0.00 0.00 2.32
5002 7046 5.685068 CACAGATTGCATAAACGTTCACAAA 59.315 36.000 0.00 0.00 0.00 2.83
5003 7047 5.211454 CACAGATTGCATAAACGTTCACAA 58.789 37.500 0.00 4.51 0.00 3.33
5004 7048 4.274705 ACACAGATTGCATAAACGTTCACA 59.725 37.500 0.00 0.00 0.00 3.58
5005 7049 4.783242 ACACAGATTGCATAAACGTTCAC 58.217 39.130 0.00 0.00 0.00 3.18
5006 7050 6.735678 ATACACAGATTGCATAAACGTTCA 57.264 33.333 0.00 0.00 0.00 3.18
5007 7051 9.716507 AAATATACACAGATTGCATAAACGTTC 57.283 29.630 0.00 0.00 0.00 3.95
5009 7053 9.716507 GAAAATATACACAGATTGCATAAACGT 57.283 29.630 0.00 0.00 0.00 3.99
5010 7054 9.715123 TGAAAATATACACAGATTGCATAAACG 57.285 29.630 0.00 0.00 0.00 3.60
5029 7073 9.784531 TGGCAAATAGTCCAAATTTTGAAAATA 57.215 25.926 10.72 3.06 32.17 1.40
5030 7074 8.688747 TGGCAAATAGTCCAAATTTTGAAAAT 57.311 26.923 10.72 0.00 32.17 1.82
5031 7075 8.688747 ATGGCAAATAGTCCAAATTTTGAAAA 57.311 26.923 10.72 0.00 35.75 2.29
5032 7076 9.956640 ATATGGCAAATAGTCCAAATTTTGAAA 57.043 25.926 10.72 0.00 35.75 2.69
5033 7077 9.956640 AATATGGCAAATAGTCCAAATTTTGAA 57.043 25.926 10.72 0.00 35.75 2.69
5034 7078 9.598517 GAATATGGCAAATAGTCCAAATTTTGA 57.401 29.630 10.72 0.00 35.75 2.69
5035 7079 9.603921 AGAATATGGCAAATAGTCCAAATTTTG 57.396 29.630 1.99 1.99 35.75 2.44
5037 7081 9.603921 CAAGAATATGGCAAATAGTCCAAATTT 57.396 29.630 0.00 0.00 35.75 1.82
5038 7082 8.980596 TCAAGAATATGGCAAATAGTCCAAATT 58.019 29.630 0.00 0.00 35.75 1.82
5039 7083 8.537728 TCAAGAATATGGCAAATAGTCCAAAT 57.462 30.769 0.00 0.00 35.75 2.32
5040 7084 7.953005 TCAAGAATATGGCAAATAGTCCAAA 57.047 32.000 0.00 0.00 35.75 3.28
5041 7085 7.395772 TGTTCAAGAATATGGCAAATAGTCCAA 59.604 33.333 0.00 0.00 35.75 3.53
5042 7086 6.889177 TGTTCAAGAATATGGCAAATAGTCCA 59.111 34.615 0.00 0.00 36.70 4.02
5043 7087 7.333528 TGTTCAAGAATATGGCAAATAGTCC 57.666 36.000 0.00 0.00 0.00 3.85
5044 7088 9.807649 AAATGTTCAAGAATATGGCAAATAGTC 57.192 29.630 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.