Multiple sequence alignment - TraesCS6A01G407100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G407100 chr6A 100.000 3281 0 0 1 3281 612171687 612168407 0.000000e+00 6059.0
1 TraesCS6A01G407100 chr6A 83.361 1803 196 46 3 1725 612290975 612292753 0.000000e+00 1572.0
2 TraesCS6A01G407100 chr6A 85.724 1485 189 16 210 1688 611901844 611903311 0.000000e+00 1546.0
3 TraesCS6A01G407100 chr6A 85.634 1253 167 3 221 1473 125260090 125261329 0.000000e+00 1304.0
4 TraesCS6A01G407100 chr6A 80.415 434 69 7 1842 2260 125261615 125262047 1.900000e-82 316.0
5 TraesCS6A01G407100 chr6A 80.184 434 70 7 1842 2260 611903385 611903817 8.840000e-81 311.0
6 TraesCS6A01G407100 chr6A 79.534 386 71 8 254 635 612660137 612660518 5.400000e-68 268.0
7 TraesCS6A01G407100 chr6A 90.551 127 8 3 1 124 612299696 612299821 7.280000e-37 165.0
8 TraesCS6A01G407100 chr6A 78.571 224 22 8 7 208 125259745 125259964 1.240000e-24 124.0
9 TraesCS6A01G407100 chr6A 87.931 58 6 1 3043 3100 102874733 102874677 2.110000e-07 67.6
10 TraesCS6A01G407100 chr6B 96.265 2597 55 9 1 2562 711334206 711331617 0.000000e+00 4220.0
11 TraesCS6A01G407100 chr6B 93.568 1959 81 16 148 2085 710684171 710682237 0.000000e+00 2878.0
12 TraesCS6A01G407100 chr6B 93.725 1020 41 7 1334 2336 710909233 710910246 0.000000e+00 1507.0
13 TraesCS6A01G407100 chr6B 84.100 956 143 9 735 1687 711756439 711757388 0.000000e+00 915.0
14 TraesCS6A01G407100 chr6B 92.093 645 36 2 1889 2518 711382702 711383346 0.000000e+00 894.0
15 TraesCS6A01G407100 chr6B 81.448 1008 152 25 737 1725 711360210 711361201 0.000000e+00 793.0
16 TraesCS6A01G407100 chr6B 93.282 387 15 6 2224 2601 710664251 710663867 7.950000e-156 560.0
17 TraesCS6A01G407100 chr6B 95.781 237 5 2 2549 2780 711317475 711317239 8.590000e-101 377.0
18 TraesCS6A01G407100 chr6B 78.855 454 79 8 1841 2278 711757500 711757952 1.150000e-74 291.0
19 TraesCS6A01G407100 chr6B 97.917 144 3 0 2083 2226 710666126 710665983 1.950000e-62 250.0
20 TraesCS6A01G407100 chr6B 85.294 238 33 2 373 609 711756200 711756436 9.090000e-61 244.0
21 TraesCS6A01G407100 chr6B 94.805 154 4 1 2633 2782 710663880 710663727 1.520000e-58 237.0
22 TraesCS6A01G407100 chr6B 97.778 135 3 0 1 135 710684365 710684231 1.970000e-57 233.0
23 TraesCS6A01G407100 chr6B 87.940 199 14 5 2591 2781 711383436 711383632 3.290000e-55 226.0
24 TraesCS6A01G407100 chr6D 94.316 2516 94 24 306 2782 466227298 466224793 0.000000e+00 3808.0
25 TraesCS6A01G407100 chr6D 83.138 1791 186 56 3 1717 466328855 466330605 0.000000e+00 1528.0
26 TraesCS6A01G407100 chr6D 81.818 913 151 13 745 1648 466818827 466817921 0.000000e+00 752.0
27 TraesCS6A01G407100 chr6D 95.131 267 8 2 3016 3281 466193746 466193484 1.820000e-112 416.0
28 TraesCS6A01G407100 chr6D 89.286 56 5 1 3043 3098 221538103 221538157 5.870000e-08 69.4
29 TraesCS6A01G407100 chr5A 94.667 225 11 1 2782 3006 139789393 139789170 6.740000e-92 348.0
30 TraesCS6A01G407100 chr5D 89.062 128 14 0 1244 1371 24576123 24575996 3.390000e-35 159.0
31 TraesCS6A01G407100 chr5D 83.582 134 13 6 7 135 24616012 24615883 2.070000e-22 117.0
32 TraesCS6A01G407100 chr2B 81.915 188 14 8 2614 2783 66667704 66667889 1.230000e-29 141.0
33 TraesCS6A01G407100 chr2D 90.123 81 6 2 2598 2678 38175511 38175589 1.610000e-18 104.0
34 TraesCS6A01G407100 chr2D 98.000 50 1 0 2634 2683 13613029 13612980 1.620000e-13 87.9
35 TraesCS6A01G407100 chr2A 90.909 77 3 1 2627 2699 43156452 43156528 2.080000e-17 100.0
36 TraesCS6A01G407100 chr7D 87.302 63 7 1 3043 3105 227555668 227555607 1.630000e-08 71.3
37 TraesCS6A01G407100 chr7B 86.364 66 8 1 3043 3108 64783571 64783507 1.630000e-08 71.3
38 TraesCS6A01G407100 chr1A 88.333 60 5 2 3043 3102 237708720 237708777 1.630000e-08 71.3
39 TraesCS6A01G407100 chr5B 87.097 62 6 2 3043 3104 496515551 496515610 5.870000e-08 69.4
40 TraesCS6A01G407100 chr5B 94.872 39 1 1 2875 2912 658368282 658368320 3.540000e-05 60.2
41 TraesCS6A01G407100 chr3B 85.294 68 8 2 3043 3110 558515480 558515415 5.870000e-08 69.4
42 TraesCS6A01G407100 chr3D 86.667 60 6 2 3043 3102 46470596 46470653 7.600000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G407100 chr6A 612168407 612171687 3280 True 6059.000000 6059 100.000000 1 3281 1 chr6A.!!$R2 3280
1 TraesCS6A01G407100 chr6A 612290975 612292753 1778 False 1572.000000 1572 83.361000 3 1725 1 chr6A.!!$F1 1722
2 TraesCS6A01G407100 chr6A 611901844 611903817 1973 False 928.500000 1546 82.954000 210 2260 2 chr6A.!!$F5 2050
3 TraesCS6A01G407100 chr6A 125259745 125262047 2302 False 581.333333 1304 81.540000 7 2260 3 chr6A.!!$F4 2253
4 TraesCS6A01G407100 chr6B 711331617 711334206 2589 True 4220.000000 4220 96.265000 1 2562 1 chr6B.!!$R2 2561
5 TraesCS6A01G407100 chr6B 710682237 710684365 2128 True 1555.500000 2878 95.673000 1 2085 2 chr6B.!!$R4 2084
6 TraesCS6A01G407100 chr6B 710909233 710910246 1013 False 1507.000000 1507 93.725000 1334 2336 1 chr6B.!!$F1 1002
7 TraesCS6A01G407100 chr6B 711360210 711361201 991 False 793.000000 793 81.448000 737 1725 1 chr6B.!!$F2 988
8 TraesCS6A01G407100 chr6B 711382702 711383632 930 False 560.000000 894 90.016500 1889 2781 2 chr6B.!!$F3 892
9 TraesCS6A01G407100 chr6B 711756200 711757952 1752 False 483.333333 915 82.749667 373 2278 3 chr6B.!!$F4 1905
10 TraesCS6A01G407100 chr6B 710663727 710666126 2399 True 349.000000 560 95.334667 2083 2782 3 chr6B.!!$R3 699
11 TraesCS6A01G407100 chr6D 466224793 466227298 2505 True 3808.000000 3808 94.316000 306 2782 1 chr6D.!!$R2 2476
12 TraesCS6A01G407100 chr6D 466328855 466330605 1750 False 1528.000000 1528 83.138000 3 1717 1 chr6D.!!$F2 1714
13 TraesCS6A01G407100 chr6D 466817921 466818827 906 True 752.000000 752 81.818000 745 1648 1 chr6D.!!$R3 903

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
934 1155 0.251386 TCTGACAGAGAAGGGACGCT 60.251 55.0 0.0 0.0 0.0 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2824 4888 0.041839 GACACGTTGCTGACTTGCTG 60.042 55.0 0.0 0.0 31.06 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.319555 CTTCGGAGGAGACGCACAAA 60.320 55.000 0.00 0.00 0.00 2.83
381 553 6.313905 ACCGTGATATCAACTCTGATTTGTTC 59.686 38.462 7.07 5.02 39.36 3.18
395 568 3.451141 TTTGTTCTGGTGTCAAATGCC 57.549 42.857 0.00 0.00 0.00 4.40
474 647 0.672711 TCGACCGACTCGATGTCTGT 60.673 55.000 0.00 10.26 46.75 3.41
483 656 3.503363 GATGTCTGTGCCGCTGCC 61.503 66.667 0.00 0.00 36.33 4.85
575 748 1.073923 GGACCTCCTGCCTTCAGAAAA 59.926 52.381 0.00 0.00 42.95 2.29
934 1155 0.251386 TCTGACAGAGAAGGGACGCT 60.251 55.000 0.00 0.00 0.00 5.07
1104 1325 4.146443 GTCACTTGCAAGCGATTAAAACAC 59.854 41.667 26.27 4.75 0.00 3.32
1140 1367 5.892160 ATTGTGACACAGAGAATTGGATG 57.108 39.130 8.55 0.00 0.00 3.51
1487 1723 7.056006 TCATCCTATCATGTGCTTATTGTTGT 58.944 34.615 0.00 0.00 0.00 3.32
1580 1820 1.909700 TGTTGACATTCCTGAAGGGC 58.090 50.000 0.00 0.00 35.41 5.19
1621 1861 4.101448 ATTCTGGAAGCGGCGCCT 62.101 61.111 30.40 17.70 0.00 5.52
1721 1984 4.809958 TGACTCTACTACTCGACTGTATGC 59.190 45.833 0.00 0.00 0.00 3.14
1884 2149 0.321298 CCTTTGTCCTACGGGTGGTG 60.321 60.000 0.00 0.00 0.00 4.17
1939 2204 3.765432 TGGATCAGGAGAAGAGGAAGA 57.235 47.619 0.00 0.00 0.00 2.87
1980 2245 0.324943 AGGGTGTTGAGTGGGAATCG 59.675 55.000 0.00 0.00 0.00 3.34
1984 2249 0.321564 TGTTGAGTGGGAATCGCCTG 60.322 55.000 0.00 0.00 36.66 4.85
2222 2502 2.213499 GGGTATCGAATCACTTGCCAG 58.787 52.381 0.00 0.00 0.00 4.85
2352 4366 9.643693 GGCAGTTTAGTTAATGTTGTAGTACTA 57.356 33.333 0.00 0.00 0.00 1.82
2393 4407 0.581529 CTGCATATGGTTGTACGCCG 59.418 55.000 4.56 0.00 0.00 6.46
2395 4409 0.580104 GCATATGGTTGTACGCCGTC 59.420 55.000 4.56 0.00 0.00 4.79
2428 4449 6.038161 GCTAAAAGGTTTTGGTTTTGCTGATT 59.962 34.615 0.00 0.00 32.08 2.57
2513 4570 5.774498 ATCGAATCCTTTTTATCAAGGCC 57.226 39.130 0.00 0.00 42.97 5.19
2600 4657 0.902531 TCTAGCCTGTAACAGCCCAC 59.097 55.000 0.00 0.00 0.00 4.61
2631 4688 7.401246 AGTTACTACTACTTACTACTGGCTGT 58.599 38.462 1.74 1.74 31.21 4.40
2791 4855 9.599866 TCAAATATAGATAATATGGCTTGGTCG 57.400 33.333 0.00 0.00 30.84 4.79
2792 4856 9.599866 CAAATATAGATAATATGGCTTGGTCGA 57.400 33.333 0.00 0.00 30.84 4.20
2793 4857 9.823647 AAATATAGATAATATGGCTTGGTCGAG 57.176 33.333 0.00 0.00 30.84 4.04
2794 4858 3.931578 AGATAATATGGCTTGGTCGAGC 58.068 45.455 7.89 7.89 41.96 5.03
2795 4859 3.580458 AGATAATATGGCTTGGTCGAGCT 59.420 43.478 16.64 0.00 42.32 4.09
2796 4860 2.246719 AATATGGCTTGGTCGAGCTC 57.753 50.000 16.64 2.73 42.32 4.09
2797 4861 1.418334 ATATGGCTTGGTCGAGCTCT 58.582 50.000 16.64 0.00 42.32 4.09
2798 4862 0.747255 TATGGCTTGGTCGAGCTCTC 59.253 55.000 16.64 4.71 42.32 3.20
2799 4863 1.965754 ATGGCTTGGTCGAGCTCTCC 61.966 60.000 16.64 14.21 42.32 3.71
2800 4864 2.185608 GCTTGGTCGAGCTCTCCC 59.814 66.667 16.64 11.62 39.57 4.30
2801 4865 2.355193 GCTTGGTCGAGCTCTCCCT 61.355 63.158 16.64 0.00 39.57 4.20
2802 4866 1.813192 CTTGGTCGAGCTCTCCCTC 59.187 63.158 16.64 0.00 0.00 4.30
2807 4871 3.222855 CGAGCTCTCCCTCGCCAT 61.223 66.667 12.85 0.00 46.69 4.40
2808 4872 1.899054 CGAGCTCTCCCTCGCCATA 60.899 63.158 12.85 0.00 46.69 2.74
2809 4873 1.663173 GAGCTCTCCCTCGCCATAC 59.337 63.158 6.43 0.00 0.00 2.39
2810 4874 0.825840 GAGCTCTCCCTCGCCATACT 60.826 60.000 6.43 0.00 0.00 2.12
2811 4875 0.825840 AGCTCTCCCTCGCCATACTC 60.826 60.000 0.00 0.00 0.00 2.59
2812 4876 1.953017 CTCTCCCTCGCCATACTCG 59.047 63.158 0.00 0.00 0.00 4.18
2813 4877 2.136196 CTCTCCCTCGCCATACTCGC 62.136 65.000 0.00 0.00 0.00 5.03
2814 4878 3.214250 CTCCCTCGCCATACTCGCC 62.214 68.421 0.00 0.00 0.00 5.54
2815 4879 3.536917 CCCTCGCCATACTCGCCA 61.537 66.667 0.00 0.00 0.00 5.69
2816 4880 2.737180 CCTCGCCATACTCGCCAT 59.263 61.111 0.00 0.00 0.00 4.40
2817 4881 1.665916 CCTCGCCATACTCGCCATG 60.666 63.158 0.00 0.00 0.00 3.66
2818 4882 1.665916 CTCGCCATACTCGCCATGG 60.666 63.158 7.63 7.63 44.94 3.66
2819 4883 2.666190 CGCCATACTCGCCATGGG 60.666 66.667 15.13 3.69 42.79 4.00
2820 4884 2.980233 GCCATACTCGCCATGGGC 60.980 66.667 15.13 4.92 46.75 5.36
2836 4900 3.424300 GCACACAGCAAGTCAGCA 58.576 55.556 0.00 0.00 44.79 4.41
2837 4901 1.729276 GCACACAGCAAGTCAGCAA 59.271 52.632 0.00 0.00 44.79 3.91
2838 4902 0.593263 GCACACAGCAAGTCAGCAAC 60.593 55.000 0.00 0.00 44.79 4.17
2839 4903 0.316442 CACACAGCAAGTCAGCAACG 60.316 55.000 0.00 0.00 36.85 4.10
2840 4904 0.744414 ACACAGCAAGTCAGCAACGT 60.744 50.000 0.00 0.00 36.85 3.99
2841 4905 0.316442 CACAGCAAGTCAGCAACGTG 60.316 55.000 0.00 1.72 39.98 4.49
2842 4906 0.744414 ACAGCAAGTCAGCAACGTGT 60.744 50.000 0.00 0.00 39.29 4.49
2843 4907 0.041839 CAGCAAGTCAGCAACGTGTC 60.042 55.000 0.00 0.00 39.29 3.67
2844 4908 1.083401 GCAAGTCAGCAACGTGTCG 60.083 57.895 0.00 0.00 39.29 4.35
2845 4909 1.083401 CAAGTCAGCAACGTGTCGC 60.083 57.895 0.00 0.00 33.27 5.19
2846 4910 2.244651 AAGTCAGCAACGTGTCGCC 61.245 57.895 0.00 0.00 0.00 5.54
2847 4911 4.059459 GTCAGCAACGTGTCGCCG 62.059 66.667 0.00 0.00 0.00 6.46
2852 4916 3.179265 CAACGTGTCGCCGCCTAG 61.179 66.667 0.00 0.00 0.00 3.02
2853 4917 3.677648 AACGTGTCGCCGCCTAGT 61.678 61.111 0.00 0.00 0.00 2.57
2854 4918 3.621892 AACGTGTCGCCGCCTAGTC 62.622 63.158 0.00 0.00 0.00 2.59
2855 4919 4.849329 CGTGTCGCCGCCTAGTCC 62.849 72.222 0.00 0.00 0.00 3.85
2856 4920 3.755628 GTGTCGCCGCCTAGTCCA 61.756 66.667 0.00 0.00 0.00 4.02
2857 4921 2.758327 TGTCGCCGCCTAGTCCAT 60.758 61.111 0.00 0.00 0.00 3.41
2858 4922 2.279517 GTCGCCGCCTAGTCCATG 60.280 66.667 0.00 0.00 0.00 3.66
2859 4923 3.536917 TCGCCGCCTAGTCCATGG 61.537 66.667 4.97 4.97 0.00 3.66
2860 4924 4.609018 CGCCGCCTAGTCCATGGG 62.609 72.222 13.02 0.00 0.00 4.00
2867 4931 1.427809 CCTAGTCCATGGGCAGATGA 58.572 55.000 20.74 0.00 0.00 2.92
2868 4932 1.770658 CCTAGTCCATGGGCAGATGAA 59.229 52.381 20.74 0.00 0.00 2.57
2869 4933 2.173356 CCTAGTCCATGGGCAGATGAAA 59.827 50.000 20.74 0.00 0.00 2.69
2870 4934 3.181436 CCTAGTCCATGGGCAGATGAAAT 60.181 47.826 20.74 0.00 0.00 2.17
2871 4935 2.941480 AGTCCATGGGCAGATGAAATC 58.059 47.619 20.74 0.00 46.04 2.17
2882 4946 1.602311 GATGAAATCGATGGCTGGCT 58.398 50.000 0.00 0.00 31.13 4.75
2883 4947 1.266175 GATGAAATCGATGGCTGGCTG 59.734 52.381 0.00 0.00 31.13 4.85
2884 4948 1.358046 GAAATCGATGGCTGGCTGC 59.642 57.895 7.96 7.96 41.94 5.25
2885 4949 2.384391 GAAATCGATGGCTGGCTGCG 62.384 60.000 10.35 6.37 44.05 5.18
2886 4950 3.687321 AATCGATGGCTGGCTGCGT 62.687 57.895 10.35 1.43 44.05 5.24
2894 4958 4.081030 CTGGCTGCGTGCGTGAAG 62.081 66.667 0.00 0.00 44.05 3.02
2895 4959 4.600576 TGGCTGCGTGCGTGAAGA 62.601 61.111 0.00 0.00 44.05 2.87
2896 4960 4.077188 GGCTGCGTGCGTGAAGAC 62.077 66.667 0.00 0.00 44.05 3.01
2897 4961 3.337889 GCTGCGTGCGTGAAGACA 61.338 61.111 0.00 0.00 0.00 3.41
2898 4962 2.849007 CTGCGTGCGTGAAGACAG 59.151 61.111 0.00 0.00 0.00 3.51
2899 4963 3.287121 CTGCGTGCGTGAAGACAGC 62.287 63.158 0.00 0.00 0.00 4.40
2900 4964 3.038417 GCGTGCGTGAAGACAGCT 61.038 61.111 0.00 0.00 0.00 4.24
2901 4965 3.004734 GCGTGCGTGAAGACAGCTC 62.005 63.158 0.00 0.00 0.00 4.09
2902 4966 2.710971 CGTGCGTGAAGACAGCTCG 61.711 63.158 0.00 0.00 40.48 5.03
2903 4967 2.734723 TGCGTGAAGACAGCTCGC 60.735 61.111 6.75 6.75 45.70 5.03
2904 4968 2.431601 GCGTGAAGACAGCTCGCT 60.432 61.111 6.47 0.00 42.88 4.93
2916 4980 2.433145 CTCGCTGCTGCTTCCGAA 60.433 61.111 14.03 0.00 36.97 4.30
2917 4981 2.029288 CTCGCTGCTGCTTCCGAAA 61.029 57.895 14.03 0.00 36.97 3.46
2918 4982 1.364626 CTCGCTGCTGCTTCCGAAAT 61.365 55.000 14.03 0.00 36.97 2.17
2919 4983 1.226211 CGCTGCTGCTTCCGAAATG 60.226 57.895 14.03 0.00 36.97 2.32
2920 4984 1.138247 GCTGCTGCTTCCGAAATGG 59.862 57.895 8.53 0.00 36.02 3.16
2921 4985 1.805254 CTGCTGCTTCCGAAATGGG 59.195 57.895 0.00 0.00 38.76 4.00
2922 4986 2.275547 CTGCTGCTTCCGAAATGGGC 62.276 60.000 0.00 0.00 38.76 5.36
2923 4987 2.048603 GCTGCTTCCGAAATGGGCT 61.049 57.895 0.00 0.00 38.76 5.19
2924 4988 0.748005 GCTGCTTCCGAAATGGGCTA 60.748 55.000 0.00 0.00 38.76 3.93
2925 4989 1.017387 CTGCTTCCGAAATGGGCTAC 58.983 55.000 0.00 0.00 38.76 3.58
2926 4990 0.618458 TGCTTCCGAAATGGGCTACT 59.382 50.000 0.00 0.00 38.76 2.57
2927 4991 1.834896 TGCTTCCGAAATGGGCTACTA 59.165 47.619 0.00 0.00 38.76 1.82
2928 4992 2.237643 TGCTTCCGAAATGGGCTACTAA 59.762 45.455 0.00 0.00 38.76 2.24
2929 4993 3.118038 TGCTTCCGAAATGGGCTACTAAT 60.118 43.478 0.00 0.00 38.76 1.73
2930 4994 3.251004 GCTTCCGAAATGGGCTACTAATG 59.749 47.826 0.00 0.00 38.76 1.90
2931 4995 3.485463 TCCGAAATGGGCTACTAATGG 57.515 47.619 0.00 0.00 38.76 3.16
2932 4996 2.105821 TCCGAAATGGGCTACTAATGGG 59.894 50.000 0.00 0.00 38.76 4.00
2933 4997 1.880027 CGAAATGGGCTACTAATGGGC 59.120 52.381 0.00 0.00 0.00 5.36
2940 5004 3.521947 GGCTACTAATGGGCCTATACG 57.478 52.381 0.24 0.00 42.31 3.06
2941 5005 2.418334 GGCTACTAATGGGCCTATACGC 60.418 54.545 0.24 0.87 42.31 4.42
2942 5006 2.496470 GCTACTAATGGGCCTATACGCT 59.504 50.000 0.24 0.00 0.00 5.07
2943 5007 3.676324 GCTACTAATGGGCCTATACGCTG 60.676 52.174 0.24 0.00 0.00 5.18
2944 5008 2.326428 ACTAATGGGCCTATACGCTGT 58.674 47.619 0.24 0.00 0.00 4.40
2945 5009 3.503365 ACTAATGGGCCTATACGCTGTA 58.497 45.455 0.24 0.00 0.00 2.74
2946 5010 3.510360 ACTAATGGGCCTATACGCTGTAG 59.490 47.826 0.24 1.72 0.00 2.74
2947 5011 2.304221 ATGGGCCTATACGCTGTAGA 57.696 50.000 0.00 0.00 0.00 2.59
2948 5012 2.304221 TGGGCCTATACGCTGTAGAT 57.696 50.000 4.53 0.00 0.00 1.98
2949 5013 2.605257 TGGGCCTATACGCTGTAGATT 58.395 47.619 4.53 0.00 0.00 2.40
2950 5014 3.770046 TGGGCCTATACGCTGTAGATTA 58.230 45.455 4.53 0.00 0.00 1.75
2951 5015 4.350245 TGGGCCTATACGCTGTAGATTAT 58.650 43.478 4.53 0.00 0.00 1.28
2952 5016 4.775780 TGGGCCTATACGCTGTAGATTATT 59.224 41.667 4.53 0.00 0.00 1.40
2953 5017 5.109903 GGGCCTATACGCTGTAGATTATTG 58.890 45.833 0.84 0.00 0.00 1.90
2954 5018 5.337330 GGGCCTATACGCTGTAGATTATTGT 60.337 44.000 0.84 0.00 0.00 2.71
2955 5019 5.805994 GGCCTATACGCTGTAGATTATTGTC 59.194 44.000 0.00 0.00 0.00 3.18
2956 5020 6.350277 GGCCTATACGCTGTAGATTATTGTCT 60.350 42.308 0.00 0.00 0.00 3.41
2957 5021 6.748198 GCCTATACGCTGTAGATTATTGTCTC 59.252 42.308 0.00 0.00 0.00 3.36
2958 5022 7.362229 GCCTATACGCTGTAGATTATTGTCTCT 60.362 40.741 0.00 0.00 0.00 3.10
2959 5023 7.965655 CCTATACGCTGTAGATTATTGTCTCTG 59.034 40.741 0.00 0.00 0.00 3.35
2960 5024 5.584253 ACGCTGTAGATTATTGTCTCTGT 57.416 39.130 0.00 0.00 0.00 3.41
2961 5025 5.344066 ACGCTGTAGATTATTGTCTCTGTG 58.656 41.667 0.00 0.00 0.00 3.66
2962 5026 5.125578 ACGCTGTAGATTATTGTCTCTGTGA 59.874 40.000 0.00 0.00 0.00 3.58
2963 5027 6.183360 ACGCTGTAGATTATTGTCTCTGTGAT 60.183 38.462 0.00 0.00 0.00 3.06
2964 5028 7.013369 ACGCTGTAGATTATTGTCTCTGTGATA 59.987 37.037 0.00 0.00 0.00 2.15
2965 5029 7.324856 CGCTGTAGATTATTGTCTCTGTGATAC 59.675 40.741 0.00 0.00 0.00 2.24
2966 5030 8.138074 GCTGTAGATTATTGTCTCTGTGATACA 58.862 37.037 0.00 0.00 0.00 2.29
2977 5041 9.503399 TTGTCTCTGTGATACATATATACGACT 57.497 33.333 0.00 0.00 0.00 4.18
2978 5042 9.503399 TGTCTCTGTGATACATATATACGACTT 57.497 33.333 0.00 0.00 0.00 3.01
3005 5069 9.541143 TTTTTCAGAAAATTTTGGGTGTAGATC 57.459 29.630 8.47 0.00 30.07 2.75
3006 5070 6.834168 TCAGAAAATTTTGGGTGTAGATCC 57.166 37.500 8.47 0.00 0.00 3.36
3007 5071 5.414454 TCAGAAAATTTTGGGTGTAGATCCG 59.586 40.000 8.47 0.00 0.00 4.18
3008 5072 4.157840 AGAAAATTTTGGGTGTAGATCCGC 59.842 41.667 8.47 0.00 0.00 5.54
3009 5073 2.052782 ATTTTGGGTGTAGATCCGCC 57.947 50.000 0.00 0.00 0.00 6.13
3013 5077 2.446036 GGTGTAGATCCGCCCCCT 60.446 66.667 0.00 0.00 0.00 4.79
3014 5078 2.808206 GGTGTAGATCCGCCCCCTG 61.808 68.421 0.00 0.00 0.00 4.45
3015 5079 2.445845 TGTAGATCCGCCCCCTGG 60.446 66.667 0.00 0.00 0.00 4.45
3017 5081 3.774336 TAGATCCGCCCCCTGGGT 61.774 66.667 12.71 0.00 46.51 4.51
3024 5088 2.939353 GCCCCCTGGGTGTTACCT 60.939 66.667 12.71 0.00 46.51 3.08
3025 5089 2.544745 GCCCCCTGGGTGTTACCTT 61.545 63.158 12.71 0.00 46.51 3.50
3026 5090 2.089116 GCCCCCTGGGTGTTACCTTT 62.089 60.000 12.71 0.00 46.51 3.11
3027 5091 0.251608 CCCCCTGGGTGTTACCTTTG 60.252 60.000 12.71 0.00 38.64 2.77
3028 5092 0.481128 CCCCTGGGTGTTACCTTTGT 59.519 55.000 12.71 0.00 38.64 2.83
3029 5093 1.706305 CCCCTGGGTGTTACCTTTGTA 59.294 52.381 12.71 0.00 38.64 2.41
3030 5094 2.108601 CCCCTGGGTGTTACCTTTGTAA 59.891 50.000 12.71 0.00 38.64 2.41
3045 5109 7.991084 ACCTTTGTAACCCTAATTAACACTC 57.009 36.000 0.00 0.00 0.00 3.51
3046 5110 7.752638 ACCTTTGTAACCCTAATTAACACTCT 58.247 34.615 0.00 0.00 0.00 3.24
3047 5111 8.222637 ACCTTTGTAACCCTAATTAACACTCTT 58.777 33.333 0.00 0.00 0.00 2.85
3048 5112 8.512138 CCTTTGTAACCCTAATTAACACTCTTG 58.488 37.037 0.00 0.00 0.00 3.02
3049 5113 7.443259 TTGTAACCCTAATTAACACTCTTGC 57.557 36.000 0.00 0.00 0.00 4.01
3050 5114 6.775708 TGTAACCCTAATTAACACTCTTGCT 58.224 36.000 0.00 0.00 0.00 3.91
3051 5115 7.228590 TGTAACCCTAATTAACACTCTTGCTT 58.771 34.615 0.00 0.00 0.00 3.91
3052 5116 7.722285 TGTAACCCTAATTAACACTCTTGCTTT 59.278 33.333 0.00 0.00 0.00 3.51
3053 5117 6.819397 ACCCTAATTAACACTCTTGCTTTC 57.181 37.500 0.00 0.00 0.00 2.62
3054 5118 6.543735 ACCCTAATTAACACTCTTGCTTTCT 58.456 36.000 0.00 0.00 0.00 2.52
3055 5119 7.686434 ACCCTAATTAACACTCTTGCTTTCTA 58.314 34.615 0.00 0.00 0.00 2.10
3056 5120 7.606839 ACCCTAATTAACACTCTTGCTTTCTAC 59.393 37.037 0.00 0.00 0.00 2.59
3057 5121 7.065923 CCCTAATTAACACTCTTGCTTTCTACC 59.934 40.741 0.00 0.00 0.00 3.18
3058 5122 7.824779 CCTAATTAACACTCTTGCTTTCTACCT 59.175 37.037 0.00 0.00 0.00 3.08
3059 5123 9.871238 CTAATTAACACTCTTGCTTTCTACCTA 57.129 33.333 0.00 0.00 0.00 3.08
3061 5125 8.950208 ATTAACACTCTTGCTTTCTACCTATC 57.050 34.615 0.00 0.00 0.00 2.08
3062 5126 6.360370 AACACTCTTGCTTTCTACCTATCA 57.640 37.500 0.00 0.00 0.00 2.15
3063 5127 6.360370 ACACTCTTGCTTTCTACCTATCAA 57.640 37.500 0.00 0.00 0.00 2.57
3064 5128 6.951971 ACACTCTTGCTTTCTACCTATCAAT 58.048 36.000 0.00 0.00 0.00 2.57
3065 5129 6.820656 ACACTCTTGCTTTCTACCTATCAATG 59.179 38.462 0.00 0.00 0.00 2.82
3066 5130 7.044181 CACTCTTGCTTTCTACCTATCAATGA 58.956 38.462 0.00 0.00 0.00 2.57
3067 5131 7.550551 CACTCTTGCTTTCTACCTATCAATGAA 59.449 37.037 0.00 0.00 0.00 2.57
3068 5132 8.103305 ACTCTTGCTTTCTACCTATCAATGAAA 58.897 33.333 0.00 0.00 0.00 2.69
3069 5133 9.118300 CTCTTGCTTTCTACCTATCAATGAAAT 57.882 33.333 0.00 0.00 0.00 2.17
3070 5134 8.896744 TCTTGCTTTCTACCTATCAATGAAATG 58.103 33.333 0.00 0.00 0.00 2.32
3071 5135 8.806429 TTGCTTTCTACCTATCAATGAAATGA 57.194 30.769 0.00 0.00 0.00 2.57
3072 5136 8.985315 TGCTTTCTACCTATCAATGAAATGAT 57.015 30.769 0.00 0.00 42.52 2.45
3118 5182 9.418045 TGAAAAGAAAAGAAAGAACAAATTCGT 57.582 25.926 0.00 0.00 40.04 3.85
3119 5183 9.675553 GAAAAGAAAAGAAAGAACAAATTCGTG 57.324 29.630 0.00 0.00 40.04 4.35
3120 5184 8.757164 AAAGAAAAGAAAGAACAAATTCGTGT 57.243 26.923 0.00 0.00 40.04 4.49
3121 5185 7.971004 AGAAAAGAAAGAACAAATTCGTGTC 57.029 32.000 0.00 0.00 40.04 3.67
3122 5186 6.972901 AGAAAAGAAAGAACAAATTCGTGTCC 59.027 34.615 0.00 0.00 40.04 4.02
3123 5187 4.830826 AGAAAGAACAAATTCGTGTCCC 57.169 40.909 0.00 0.00 40.04 4.46
3124 5188 4.461198 AGAAAGAACAAATTCGTGTCCCT 58.539 39.130 0.00 0.00 40.04 4.20
3125 5189 4.515567 AGAAAGAACAAATTCGTGTCCCTC 59.484 41.667 0.00 0.00 40.04 4.30
3126 5190 3.771577 AGAACAAATTCGTGTCCCTCT 57.228 42.857 0.00 0.00 40.04 3.69
3127 5191 3.403038 AGAACAAATTCGTGTCCCTCTG 58.597 45.455 0.00 0.00 40.04 3.35
3128 5192 2.185004 ACAAATTCGTGTCCCTCTGG 57.815 50.000 0.00 0.00 0.00 3.86
3129 5193 1.697432 ACAAATTCGTGTCCCTCTGGA 59.303 47.619 0.00 0.00 38.75 3.86
3137 5201 4.417641 TCCCTCTGGACACTCGAC 57.582 61.111 0.00 0.00 35.03 4.20
3138 5202 1.304217 TCCCTCTGGACACTCGACC 60.304 63.158 0.00 0.00 35.03 4.79
3139 5203 1.304547 CCCTCTGGACACTCGACCT 60.305 63.158 0.00 0.00 0.00 3.85
3140 5204 0.034380 CCCTCTGGACACTCGACCTA 60.034 60.000 0.00 0.00 0.00 3.08
3141 5205 1.096416 CCTCTGGACACTCGACCTAC 58.904 60.000 0.00 0.00 0.00 3.18
3142 5206 1.613520 CCTCTGGACACTCGACCTACA 60.614 57.143 0.00 0.00 0.00 2.74
3143 5207 1.469308 CTCTGGACACTCGACCTACAC 59.531 57.143 0.00 0.00 0.00 2.90
3144 5208 0.168348 CTGGACACTCGACCTACACG 59.832 60.000 0.00 0.00 0.00 4.49
3145 5209 0.535780 TGGACACTCGACCTACACGT 60.536 55.000 0.00 0.00 0.00 4.49
3146 5210 0.109873 GGACACTCGACCTACACGTG 60.110 60.000 15.48 15.48 0.00 4.49
3147 5211 0.870393 GACACTCGACCTACACGTGA 59.130 55.000 25.01 4.97 0.00 4.35
3148 5212 0.873054 ACACTCGACCTACACGTGAG 59.127 55.000 25.01 14.69 0.00 3.51
3149 5213 1.154197 CACTCGACCTACACGTGAGA 58.846 55.000 25.01 8.71 0.00 3.27
3150 5214 1.136029 CACTCGACCTACACGTGAGAC 60.136 57.143 25.01 9.68 0.00 3.36
3152 5216 0.319813 TCGACCTACACGTGAGACGA 60.320 55.000 25.01 21.97 46.05 4.20
3153 5217 0.725686 CGACCTACACGTGAGACGAT 59.274 55.000 25.01 0.00 46.05 3.73
3154 5218 1.529214 CGACCTACACGTGAGACGATG 60.529 57.143 25.01 5.56 46.05 3.84
3155 5219 0.809385 ACCTACACGTGAGACGATGG 59.191 55.000 25.01 14.14 46.05 3.51
3156 5220 0.525668 CCTACACGTGAGACGATGGC 60.526 60.000 25.01 0.00 46.05 4.40
3157 5221 0.861866 CTACACGTGAGACGATGGCG 60.862 60.000 25.01 0.00 46.05 5.69
3167 5231 4.884257 CGATGGCGTACGGGGGTG 62.884 72.222 18.39 0.00 0.00 4.61
3178 5242 4.067913 GGGGGTGCGCCAAACATG 62.068 66.667 19.98 0.00 36.42 3.21
3179 5243 4.740431 GGGGTGCGCCAAACATGC 62.740 66.667 19.98 0.00 36.17 4.06
3180 5244 4.740431 GGGTGCGCCAAACATGCC 62.740 66.667 19.98 0.00 36.17 4.40
3181 5245 4.740431 GGTGCGCCAAACATGCCC 62.740 66.667 12.58 0.00 34.09 5.36
3182 5246 4.740431 GTGCGCCAAACATGCCCC 62.740 66.667 4.18 0.00 0.00 5.80
3185 5249 3.814268 CGCCAAACATGCCCCGAG 61.814 66.667 0.00 0.00 0.00 4.63
3186 5250 4.133796 GCCAAACATGCCCCGAGC 62.134 66.667 0.00 0.00 44.14 5.03
3187 5251 3.451894 CCAAACATGCCCCGAGCC 61.452 66.667 0.00 0.00 42.71 4.70
3188 5252 2.676121 CAAACATGCCCCGAGCCA 60.676 61.111 0.00 0.00 42.71 4.75
3189 5253 2.676471 AAACATGCCCCGAGCCAC 60.676 61.111 0.00 0.00 42.71 5.01
3200 5264 2.182030 GAGCCACGGGTTCGAGAG 59.818 66.667 0.00 0.00 40.11 3.20
3201 5265 2.282958 AGCCACGGGTTCGAGAGA 60.283 61.111 0.00 0.00 40.11 3.10
3202 5266 2.126031 GCCACGGGTTCGAGAGAC 60.126 66.667 0.00 0.00 41.84 3.36
3203 5267 2.178521 CCACGGGTTCGAGAGACG 59.821 66.667 0.00 0.00 41.84 4.18
3204 5268 2.623915 CCACGGGTTCGAGAGACGT 61.624 63.158 0.00 0.00 40.33 4.34
3205 5269 1.442184 CACGGGTTCGAGAGACGTG 60.442 63.158 15.72 15.72 46.45 4.49
3206 5270 2.504244 CGGGTTCGAGAGACGTGC 60.504 66.667 0.00 0.00 41.84 5.34
3207 5271 2.649034 GGGTTCGAGAGACGTGCA 59.351 61.111 0.00 0.00 41.84 4.57
3208 5272 1.215647 GGGTTCGAGAGACGTGCAT 59.784 57.895 0.00 0.00 41.84 3.96
3209 5273 1.078759 GGGTTCGAGAGACGTGCATG 61.079 60.000 3.82 3.82 41.84 4.06
3210 5274 1.687494 GGTTCGAGAGACGTGCATGC 61.687 60.000 11.82 11.82 41.84 4.06
3211 5275 1.008875 GTTCGAGAGACGTGCATGCA 61.009 55.000 18.46 18.46 41.84 3.96
3212 5276 0.108662 TTCGAGAGACGTGCATGCAT 60.109 50.000 25.64 8.94 41.84 3.96
3213 5277 0.803380 TCGAGAGACGTGCATGCATG 60.803 55.000 33.18 33.18 43.13 4.06
3243 5307 1.992170 CGGAGGTTAGTTTCGTCCAG 58.008 55.000 0.00 0.00 39.07 3.86
3244 5308 1.271656 CGGAGGTTAGTTTCGTCCAGT 59.728 52.381 0.00 0.00 39.07 4.00
3245 5309 2.489329 CGGAGGTTAGTTTCGTCCAGTA 59.511 50.000 0.00 0.00 39.07 2.74
3246 5310 3.129988 CGGAGGTTAGTTTCGTCCAGTAT 59.870 47.826 0.00 0.00 39.07 2.12
3247 5311 4.336433 CGGAGGTTAGTTTCGTCCAGTATA 59.664 45.833 0.00 0.00 39.07 1.47
3248 5312 5.163622 CGGAGGTTAGTTTCGTCCAGTATAA 60.164 44.000 0.00 0.00 39.07 0.98
3249 5313 6.460676 CGGAGGTTAGTTTCGTCCAGTATAAT 60.461 42.308 0.00 0.00 39.07 1.28
3250 5314 7.270779 GGAGGTTAGTTTCGTCCAGTATAATT 58.729 38.462 0.00 0.00 38.99 1.40
3251 5315 7.437565 GGAGGTTAGTTTCGTCCAGTATAATTC 59.562 40.741 0.00 0.00 38.99 2.17
3252 5316 8.075761 AGGTTAGTTTCGTCCAGTATAATTCT 57.924 34.615 0.00 0.00 0.00 2.40
3253 5317 8.537858 AGGTTAGTTTCGTCCAGTATAATTCTT 58.462 33.333 0.00 0.00 0.00 2.52
3254 5318 9.159364 GGTTAGTTTCGTCCAGTATAATTCTTT 57.841 33.333 0.00 0.00 0.00 2.52
3278 5342 2.823628 GGGACGACGACTTTTCTGG 58.176 57.895 0.00 0.00 0.00 3.86
3279 5343 0.033090 GGGACGACGACTTTTCTGGT 59.967 55.000 0.00 0.00 0.00 4.00
3280 5344 1.137513 GGACGACGACTTTTCTGGTG 58.862 55.000 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 6.205658 GTCTGAAAACTGATTGCCTAGAGTTT 59.794 38.462 0.00 0.00 39.71 2.66
381 553 1.068333 CCTTTCGGCATTTGACACCAG 60.068 52.381 0.00 0.00 0.00 4.00
395 568 3.750130 CCTATCATCTGGATTGCCTTTCG 59.250 47.826 0.00 0.00 37.44 3.46
483 656 1.201181 CTCGAGAGGACACTGGTTCTG 59.799 57.143 6.58 0.00 31.09 3.02
934 1155 3.610040 ATCGTCAATGGTGCACTCTAA 57.390 42.857 17.98 0.44 0.00 2.10
1104 1325 7.012327 TCTGTGTCACAATTGAGAAAACCTAAG 59.988 37.037 13.59 6.08 30.10 2.18
1430 1662 4.622701 AGTGAAGACAGAACAAAGCAAC 57.377 40.909 0.00 0.00 0.00 4.17
1487 1723 4.104102 ACACTCTGGTTGAACCCAAATCTA 59.896 41.667 12.53 0.00 37.50 1.98
1580 1820 3.882444 ACATTGTCCAGGTGAGATCATG 58.118 45.455 0.00 0.00 0.00 3.07
1621 1861 3.107601 CATGTAGAACTCCTCCAGGGAA 58.892 50.000 0.00 0.00 44.58 3.97
1721 1984 3.409026 ACAGGCTGTTGGTAAGAAGAG 57.591 47.619 15.88 0.00 0.00 2.85
1884 2149 6.652481 CACAAGGATGATCCATTACCTACATC 59.348 42.308 14.90 0.00 39.61 3.06
1980 2245 1.135315 TGCTTGAAATTCGATGCAGGC 60.135 47.619 0.00 0.00 34.43 4.85
1984 2249 2.253603 GTGGTGCTTGAAATTCGATGC 58.746 47.619 0.00 0.00 0.00 3.91
2222 2502 3.196685 AGCAGTAGTCAGGAAGTGGATTC 59.803 47.826 0.00 0.00 37.17 2.52
2352 4366 6.623767 GCAGAATTGACCGCTTTCTCTAAATT 60.624 38.462 0.00 0.00 0.00 1.82
2365 4379 3.378112 ACAACCATATGCAGAATTGACCG 59.622 43.478 9.51 0.00 0.00 4.79
2393 4407 5.222631 CAAAACCTTTTAGCCATCAGTGAC 58.777 41.667 0.00 0.00 0.00 3.67
2395 4409 4.039124 ACCAAAACCTTTTAGCCATCAGTG 59.961 41.667 0.00 0.00 0.00 3.66
2631 4688 2.527624 ACTGTGGGCTGCTCCAGA 60.528 61.111 20.19 13.65 37.50 3.86
2782 4846 2.185608 GGAGAGCTCGACCAAGCC 59.814 66.667 21.99 8.17 43.56 4.35
2783 4847 2.185608 GGGAGAGCTCGACCAAGC 59.814 66.667 25.88 11.57 42.82 4.01
2784 4848 1.813192 GAGGGAGAGCTCGACCAAG 59.187 63.158 25.22 0.00 0.00 3.61
2785 4849 2.046864 CGAGGGAGAGCTCGACCAA 61.047 63.158 25.22 0.00 44.85 3.67
2786 4850 2.438614 CGAGGGAGAGCTCGACCA 60.439 66.667 25.22 0.00 44.85 4.02
2787 4851 3.894947 GCGAGGGAGAGCTCGACC 61.895 72.222 18.61 18.61 44.85 4.79
2788 4852 3.894947 GGCGAGGGAGAGCTCGAC 61.895 72.222 8.37 6.74 44.85 4.20
2789 4853 2.339275 TATGGCGAGGGAGAGCTCGA 62.339 60.000 8.37 0.00 44.85 4.04
2790 4854 1.899054 TATGGCGAGGGAGAGCTCG 60.899 63.158 8.37 0.00 44.85 5.03
2791 4855 0.825840 AGTATGGCGAGGGAGAGCTC 60.826 60.000 5.27 5.27 0.00 4.09
2792 4856 0.825840 GAGTATGGCGAGGGAGAGCT 60.826 60.000 0.00 0.00 0.00 4.09
2793 4857 1.663173 GAGTATGGCGAGGGAGAGC 59.337 63.158 0.00 0.00 0.00 4.09
2794 4858 1.953017 CGAGTATGGCGAGGGAGAG 59.047 63.158 0.00 0.00 0.00 3.20
2795 4859 2.194212 GCGAGTATGGCGAGGGAGA 61.194 63.158 0.00 0.00 0.00 3.71
2796 4860 2.336809 GCGAGTATGGCGAGGGAG 59.663 66.667 0.00 0.00 0.00 4.30
2797 4861 3.224324 GGCGAGTATGGCGAGGGA 61.224 66.667 0.00 0.00 42.57 4.20
2798 4862 2.872388 ATGGCGAGTATGGCGAGGG 61.872 63.158 0.00 0.00 42.57 4.30
2799 4863 1.665916 CATGGCGAGTATGGCGAGG 60.666 63.158 0.00 0.00 42.57 4.63
2800 4864 1.665916 CCATGGCGAGTATGGCGAG 60.666 63.158 0.00 0.00 42.57 5.03
2801 4865 2.421314 CCATGGCGAGTATGGCGA 59.579 61.111 0.00 0.00 42.57 5.54
2802 4866 2.666190 CCCATGGCGAGTATGGCG 60.666 66.667 6.09 0.00 42.57 5.69
2803 4867 2.980233 GCCCATGGCGAGTATGGC 60.980 66.667 6.09 0.00 43.00 4.40
2813 4877 1.870055 GACTTGCTGTGTGCCCATGG 61.870 60.000 4.14 4.14 42.00 3.66
2814 4878 1.174078 TGACTTGCTGTGTGCCCATG 61.174 55.000 0.00 0.00 42.00 3.66
2815 4879 0.892358 CTGACTTGCTGTGTGCCCAT 60.892 55.000 0.00 0.00 42.00 4.00
2816 4880 1.526686 CTGACTTGCTGTGTGCCCA 60.527 57.895 0.00 0.00 42.00 5.36
2817 4881 2.912624 GCTGACTTGCTGTGTGCCC 61.913 63.158 0.00 0.00 42.00 5.36
2818 4882 1.727511 TTGCTGACTTGCTGTGTGCC 61.728 55.000 0.00 0.00 42.00 5.01
2819 4883 0.593263 GTTGCTGACTTGCTGTGTGC 60.593 55.000 0.00 0.00 43.25 4.57
2820 4884 0.316442 CGTTGCTGACTTGCTGTGTG 60.316 55.000 0.00 0.00 0.00 3.82
2821 4885 0.744414 ACGTTGCTGACTTGCTGTGT 60.744 50.000 0.00 0.00 0.00 3.72
2822 4886 0.316442 CACGTTGCTGACTTGCTGTG 60.316 55.000 0.00 0.00 0.00 3.66
2823 4887 0.744414 ACACGTTGCTGACTTGCTGT 60.744 50.000 0.00 0.00 31.06 4.40
2824 4888 0.041839 GACACGTTGCTGACTTGCTG 60.042 55.000 0.00 0.00 31.06 4.41
2825 4889 1.490693 CGACACGTTGCTGACTTGCT 61.491 55.000 0.00 0.00 31.06 3.91
2826 4890 1.083401 CGACACGTTGCTGACTTGC 60.083 57.895 0.00 0.00 31.06 4.01
2827 4891 1.083401 GCGACACGTTGCTGACTTG 60.083 57.895 1.99 0.00 37.03 3.16
2828 4892 2.244651 GGCGACACGTTGCTGACTT 61.245 57.895 9.22 0.00 39.87 3.01
2829 4893 2.661866 GGCGACACGTTGCTGACT 60.662 61.111 9.22 0.00 39.87 3.41
2830 4894 4.059459 CGGCGACACGTTGCTGAC 62.059 66.667 12.15 0.00 46.84 3.51
2835 4899 3.179265 CTAGGCGGCGACACGTTG 61.179 66.667 18.30 0.00 35.98 4.10
2836 4900 3.621892 GACTAGGCGGCGACACGTT 62.622 63.158 18.30 0.00 35.98 3.99
2837 4901 4.112341 GACTAGGCGGCGACACGT 62.112 66.667 18.30 11.77 35.98 4.49
2838 4902 4.849329 GGACTAGGCGGCGACACG 62.849 72.222 18.30 7.79 0.00 4.49
2839 4903 3.077519 ATGGACTAGGCGGCGACAC 62.078 63.158 18.30 2.75 0.00 3.67
2840 4904 2.758327 ATGGACTAGGCGGCGACA 60.758 61.111 18.30 0.00 0.00 4.35
2841 4905 2.279517 CATGGACTAGGCGGCGAC 60.280 66.667 12.98 8.50 0.00 5.19
2842 4906 3.536917 CCATGGACTAGGCGGCGA 61.537 66.667 12.98 0.00 0.00 5.54
2843 4907 4.609018 CCCATGGACTAGGCGGCG 62.609 72.222 15.22 0.51 0.00 6.46
2844 4908 4.937431 GCCCATGGACTAGGCGGC 62.937 72.222 15.22 0.00 36.84 6.53
2848 4912 1.427809 TCATCTGCCCATGGACTAGG 58.572 55.000 15.22 0.00 0.00 3.02
2849 4913 3.565764 TTTCATCTGCCCATGGACTAG 57.434 47.619 15.22 8.40 0.00 2.57
2850 4914 3.494924 CGATTTCATCTGCCCATGGACTA 60.495 47.826 15.22 0.00 0.00 2.59
2851 4915 2.747467 CGATTTCATCTGCCCATGGACT 60.747 50.000 15.22 0.00 0.00 3.85
2852 4916 1.605710 CGATTTCATCTGCCCATGGAC 59.394 52.381 15.22 0.55 0.00 4.02
2853 4917 1.490069 TCGATTTCATCTGCCCATGGA 59.510 47.619 15.22 0.00 0.00 3.41
2854 4918 1.971481 TCGATTTCATCTGCCCATGG 58.029 50.000 4.14 4.14 0.00 3.66
2855 4919 2.228103 CCATCGATTTCATCTGCCCATG 59.772 50.000 0.00 0.00 0.00 3.66
2856 4920 2.511659 CCATCGATTTCATCTGCCCAT 58.488 47.619 0.00 0.00 0.00 4.00
2857 4921 1.971481 CCATCGATTTCATCTGCCCA 58.029 50.000 0.00 0.00 0.00 5.36
2858 4922 0.595095 GCCATCGATTTCATCTGCCC 59.405 55.000 0.00 0.00 0.00 5.36
2859 4923 1.266175 CAGCCATCGATTTCATCTGCC 59.734 52.381 0.00 0.00 0.00 4.85
2860 4924 1.266175 CCAGCCATCGATTTCATCTGC 59.734 52.381 0.00 0.00 0.00 4.26
2861 4925 1.266175 GCCAGCCATCGATTTCATCTG 59.734 52.381 0.00 0.00 0.00 2.90
2862 4926 1.142465 AGCCAGCCATCGATTTCATCT 59.858 47.619 0.00 0.00 0.00 2.90
2863 4927 1.266175 CAGCCAGCCATCGATTTCATC 59.734 52.381 0.00 0.00 0.00 2.92
2864 4928 1.315690 CAGCCAGCCATCGATTTCAT 58.684 50.000 0.00 0.00 0.00 2.57
2865 4929 1.378882 GCAGCCAGCCATCGATTTCA 61.379 55.000 0.00 0.00 37.23 2.69
2866 4930 1.358046 GCAGCCAGCCATCGATTTC 59.642 57.895 0.00 0.00 37.23 2.17
2867 4931 2.475466 CGCAGCCAGCCATCGATTT 61.475 57.895 0.00 0.00 41.38 2.17
2868 4932 2.898840 CGCAGCCAGCCATCGATT 60.899 61.111 0.00 0.00 41.38 3.34
2869 4933 4.166888 ACGCAGCCAGCCATCGAT 62.167 61.111 0.00 0.00 41.38 3.59
2877 4941 4.081030 CTTCACGCACGCAGCCAG 62.081 66.667 0.00 0.00 41.38 4.85
2878 4942 4.600576 TCTTCACGCACGCAGCCA 62.601 61.111 0.00 0.00 41.38 4.75
2879 4943 4.077188 GTCTTCACGCACGCAGCC 62.077 66.667 0.00 0.00 41.38 4.85
2880 4944 3.287121 CTGTCTTCACGCACGCAGC 62.287 63.158 0.00 0.00 40.87 5.25
2881 4945 2.849007 CTGTCTTCACGCACGCAG 59.151 61.111 0.00 0.00 0.00 5.18
2882 4946 3.337889 GCTGTCTTCACGCACGCA 61.338 61.111 0.00 0.00 0.00 5.24
2883 4947 3.004734 GAGCTGTCTTCACGCACGC 62.005 63.158 0.00 0.00 0.00 5.34
2884 4948 2.710971 CGAGCTGTCTTCACGCACG 61.711 63.158 0.00 0.00 0.00 5.34
2885 4949 3.004734 GCGAGCTGTCTTCACGCAC 62.005 63.158 8.62 0.00 46.75 5.34
2886 4950 2.734723 GCGAGCTGTCTTCACGCA 60.735 61.111 8.62 0.00 46.75 5.24
2888 4952 2.724708 GCAGCGAGCTGTCTTCACG 61.725 63.158 23.79 0.00 45.24 4.35
2889 4953 3.163655 GCAGCGAGCTGTCTTCAC 58.836 61.111 23.79 4.87 45.24 3.18
2901 4965 2.588146 CCATTTCGGAAGCAGCAGCG 62.588 60.000 0.00 0.00 41.58 5.18
2902 4966 1.138247 CCATTTCGGAAGCAGCAGC 59.862 57.895 0.00 0.00 37.91 5.25
2903 4967 1.805254 CCCATTTCGGAAGCAGCAG 59.195 57.895 0.00 0.00 36.56 4.24
2904 4968 2.342650 GCCCATTTCGGAAGCAGCA 61.343 57.895 0.00 0.00 36.56 4.41
2905 4969 0.748005 TAGCCCATTTCGGAAGCAGC 60.748 55.000 3.06 0.00 36.56 5.25
2906 4970 1.017387 GTAGCCCATTTCGGAAGCAG 58.983 55.000 3.06 0.00 36.56 4.24
2907 4971 0.618458 AGTAGCCCATTTCGGAAGCA 59.382 50.000 3.06 0.00 36.56 3.91
2908 4972 2.614829 TAGTAGCCCATTTCGGAAGC 57.385 50.000 0.00 0.00 36.56 3.86
2909 4973 3.815401 CCATTAGTAGCCCATTTCGGAAG 59.185 47.826 0.00 0.00 36.56 3.46
2910 4974 3.434453 CCCATTAGTAGCCCATTTCGGAA 60.434 47.826 0.00 0.00 36.56 4.30
2911 4975 2.105821 CCCATTAGTAGCCCATTTCGGA 59.894 50.000 0.00 0.00 36.56 4.55
2912 4976 2.504367 CCCATTAGTAGCCCATTTCGG 58.496 52.381 0.00 0.00 0.00 4.30
2913 4977 1.880027 GCCCATTAGTAGCCCATTTCG 59.120 52.381 0.00 0.00 0.00 3.46
2914 4978 2.239400 GGCCCATTAGTAGCCCATTTC 58.761 52.381 0.00 0.00 41.00 2.17
2915 4979 2.381752 GGCCCATTAGTAGCCCATTT 57.618 50.000 0.00 0.00 41.00 2.32
2921 4985 2.496470 AGCGTATAGGCCCATTAGTAGC 59.504 50.000 13.60 0.00 0.00 3.58
2922 4986 3.510360 ACAGCGTATAGGCCCATTAGTAG 59.490 47.826 13.60 0.00 0.00 2.57
2923 4987 3.503365 ACAGCGTATAGGCCCATTAGTA 58.497 45.455 13.60 0.00 0.00 1.82
2924 4988 2.326428 ACAGCGTATAGGCCCATTAGT 58.674 47.619 13.60 1.52 0.00 2.24
2925 4989 3.762288 TCTACAGCGTATAGGCCCATTAG 59.238 47.826 13.60 9.11 0.00 1.73
2926 4990 3.770046 TCTACAGCGTATAGGCCCATTA 58.230 45.455 13.60 0.36 0.00 1.90
2927 4991 2.605257 TCTACAGCGTATAGGCCCATT 58.395 47.619 13.60 0.00 0.00 3.16
2928 4992 2.304221 TCTACAGCGTATAGGCCCAT 57.696 50.000 13.60 0.00 0.00 4.00
2929 4993 2.304221 ATCTACAGCGTATAGGCCCA 57.696 50.000 13.60 0.00 0.00 5.36
2930 4994 5.109903 CAATAATCTACAGCGTATAGGCCC 58.890 45.833 13.60 0.00 0.00 5.80
2931 4995 5.721232 ACAATAATCTACAGCGTATAGGCC 58.279 41.667 13.60 0.00 0.00 5.19
2932 4996 6.622549 AGACAATAATCTACAGCGTATAGGC 58.377 40.000 9.40 9.40 0.00 3.93
2933 4997 7.965655 CAGAGACAATAATCTACAGCGTATAGG 59.034 40.741 0.00 0.00 0.00 2.57
2934 4998 8.508062 ACAGAGACAATAATCTACAGCGTATAG 58.492 37.037 0.00 0.00 0.00 1.31
2935 4999 8.290325 CACAGAGACAATAATCTACAGCGTATA 58.710 37.037 0.00 0.00 0.00 1.47
2936 5000 7.013369 TCACAGAGACAATAATCTACAGCGTAT 59.987 37.037 0.00 0.00 0.00 3.06
2937 5001 6.317893 TCACAGAGACAATAATCTACAGCGTA 59.682 38.462 0.00 0.00 0.00 4.42
2938 5002 5.125578 TCACAGAGACAATAATCTACAGCGT 59.874 40.000 0.00 0.00 0.00 5.07
2939 5003 5.582550 TCACAGAGACAATAATCTACAGCG 58.417 41.667 0.00 0.00 0.00 5.18
2940 5004 8.138074 TGTATCACAGAGACAATAATCTACAGC 58.862 37.037 0.00 0.00 30.58 4.40
2951 5015 9.503399 AGTCGTATATATGTATCACAGAGACAA 57.497 33.333 0.00 0.00 37.33 3.18
2952 5016 9.503399 AAGTCGTATATATGTATCACAGAGACA 57.497 33.333 1.91 0.00 38.15 3.41
2979 5043 9.541143 GATCTACACCCAAAATTTTCTGAAAAA 57.459 29.630 18.43 3.97 38.66 1.94
2980 5044 8.147704 GGATCTACACCCAAAATTTTCTGAAAA 58.852 33.333 17.04 17.04 34.41 2.29
2981 5045 7.523052 CGGATCTACACCCAAAATTTTCTGAAA 60.523 37.037 0.00 0.00 0.00 2.69
2982 5046 6.072175 CGGATCTACACCCAAAATTTTCTGAA 60.072 38.462 0.00 0.00 0.00 3.02
2983 5047 5.414454 CGGATCTACACCCAAAATTTTCTGA 59.586 40.000 0.00 0.00 0.00 3.27
2984 5048 5.640732 CGGATCTACACCCAAAATTTTCTG 58.359 41.667 0.00 0.00 0.00 3.02
2985 5049 4.157840 GCGGATCTACACCCAAAATTTTCT 59.842 41.667 0.00 0.00 0.00 2.52
2986 5050 4.421058 GCGGATCTACACCCAAAATTTTC 58.579 43.478 0.00 0.00 0.00 2.29
2987 5051 3.194755 GGCGGATCTACACCCAAAATTTT 59.805 43.478 0.00 0.00 0.00 1.82
2988 5052 2.758423 GGCGGATCTACACCCAAAATTT 59.242 45.455 0.00 0.00 0.00 1.82
2989 5053 2.375146 GGCGGATCTACACCCAAAATT 58.625 47.619 0.00 0.00 0.00 1.82
2990 5054 1.409661 GGGCGGATCTACACCCAAAAT 60.410 52.381 7.68 0.00 42.33 1.82
2991 5055 0.034863 GGGCGGATCTACACCCAAAA 60.035 55.000 7.68 0.00 42.33 2.44
2992 5056 1.605453 GGGCGGATCTACACCCAAA 59.395 57.895 7.68 0.00 42.33 3.28
2993 5057 2.372074 GGGGCGGATCTACACCCAA 61.372 63.158 12.75 0.00 44.76 4.12
2994 5058 2.766651 GGGGCGGATCTACACCCA 60.767 66.667 12.75 0.00 44.76 4.51
2995 5059 3.557290 GGGGGCGGATCTACACCC 61.557 72.222 9.69 9.69 42.01 4.61
2996 5060 2.446036 AGGGGGCGGATCTACACC 60.446 66.667 0.00 0.00 0.00 4.16
2997 5061 2.808206 CCAGGGGGCGGATCTACAC 61.808 68.421 0.00 0.00 0.00 2.90
2998 5062 2.445845 CCAGGGGGCGGATCTACA 60.446 66.667 0.00 0.00 0.00 2.74
2999 5063 3.242291 CCCAGGGGGCGGATCTAC 61.242 72.222 0.00 0.00 35.35 2.59
3008 5072 5.104860 TTACAAAGGTAACACCCAGGGGG 62.105 52.174 6.02 6.02 40.61 5.40
3009 5073 0.481128 ACAAAGGTAACACCCAGGGG 59.519 55.000 11.37 6.87 39.75 4.79
3010 5074 3.512219 TTACAAAGGTAACACCCAGGG 57.488 47.619 2.85 2.85 39.75 4.45
3019 5083 9.506018 GAGTGTTAATTAGGGTTACAAAGGTAA 57.494 33.333 0.00 0.00 37.15 2.85
3020 5084 8.883302 AGAGTGTTAATTAGGGTTACAAAGGTA 58.117 33.333 0.00 0.00 0.00 3.08
3021 5085 7.752638 AGAGTGTTAATTAGGGTTACAAAGGT 58.247 34.615 0.00 0.00 0.00 3.50
3022 5086 8.512138 CAAGAGTGTTAATTAGGGTTACAAAGG 58.488 37.037 0.00 0.00 0.00 3.11
3023 5087 8.021396 GCAAGAGTGTTAATTAGGGTTACAAAG 58.979 37.037 0.00 0.00 0.00 2.77
3024 5088 7.722285 AGCAAGAGTGTTAATTAGGGTTACAAA 59.278 33.333 0.00 0.00 0.00 2.83
3025 5089 7.228590 AGCAAGAGTGTTAATTAGGGTTACAA 58.771 34.615 0.00 0.00 0.00 2.41
3026 5090 6.775708 AGCAAGAGTGTTAATTAGGGTTACA 58.224 36.000 0.00 0.00 0.00 2.41
3027 5091 7.683437 AAGCAAGAGTGTTAATTAGGGTTAC 57.317 36.000 0.00 0.00 0.00 2.50
3028 5092 8.161425 AGAAAGCAAGAGTGTTAATTAGGGTTA 58.839 33.333 0.00 0.00 0.00 2.85
3029 5093 7.004691 AGAAAGCAAGAGTGTTAATTAGGGTT 58.995 34.615 0.00 0.00 0.00 4.11
3030 5094 6.543735 AGAAAGCAAGAGTGTTAATTAGGGT 58.456 36.000 0.00 0.00 0.00 4.34
3031 5095 7.065923 GGTAGAAAGCAAGAGTGTTAATTAGGG 59.934 40.741 0.00 0.00 0.00 3.53
3032 5096 7.824779 AGGTAGAAAGCAAGAGTGTTAATTAGG 59.175 37.037 0.00 0.00 0.00 2.69
3033 5097 8.779354 AGGTAGAAAGCAAGAGTGTTAATTAG 57.221 34.615 0.00 0.00 0.00 1.73
3035 5099 9.384764 GATAGGTAGAAAGCAAGAGTGTTAATT 57.615 33.333 0.00 0.00 0.00 1.40
3036 5100 8.540388 TGATAGGTAGAAAGCAAGAGTGTTAAT 58.460 33.333 0.00 0.00 0.00 1.40
3037 5101 7.903145 TGATAGGTAGAAAGCAAGAGTGTTAA 58.097 34.615 0.00 0.00 0.00 2.01
3038 5102 7.476540 TGATAGGTAGAAAGCAAGAGTGTTA 57.523 36.000 0.00 0.00 0.00 2.41
3039 5103 6.360370 TGATAGGTAGAAAGCAAGAGTGTT 57.640 37.500 0.00 0.00 0.00 3.32
3040 5104 6.360370 TTGATAGGTAGAAAGCAAGAGTGT 57.640 37.500 0.00 0.00 0.00 3.55
3041 5105 7.044181 TCATTGATAGGTAGAAAGCAAGAGTG 58.956 38.462 0.00 0.00 0.00 3.51
3042 5106 7.187824 TCATTGATAGGTAGAAAGCAAGAGT 57.812 36.000 0.00 0.00 0.00 3.24
3043 5107 8.498054 TTTCATTGATAGGTAGAAAGCAAGAG 57.502 34.615 0.00 0.00 0.00 2.85
3044 5108 8.896744 CATTTCATTGATAGGTAGAAAGCAAGA 58.103 33.333 0.00 0.00 32.45 3.02
3045 5109 8.896744 TCATTTCATTGATAGGTAGAAAGCAAG 58.103 33.333 0.00 0.00 32.45 4.01
3046 5110 8.806429 TCATTTCATTGATAGGTAGAAAGCAA 57.194 30.769 0.00 0.00 32.45 3.91
3047 5111 8.985315 ATCATTTCATTGATAGGTAGAAAGCA 57.015 30.769 0.00 0.00 34.59 3.91
3092 5156 9.418045 ACGAATTTGTTCTTTCTTTTCTTTTCA 57.582 25.926 0.00 0.00 0.00 2.69
3093 5157 9.675553 CACGAATTTGTTCTTTCTTTTCTTTTC 57.324 29.630 0.00 0.00 0.00 2.29
3094 5158 9.203421 ACACGAATTTGTTCTTTCTTTTCTTTT 57.797 25.926 0.00 0.00 0.00 2.27
3095 5159 8.757164 ACACGAATTTGTTCTTTCTTTTCTTT 57.243 26.923 0.00 0.00 0.00 2.52
3096 5160 7.488150 GGACACGAATTTGTTCTTTCTTTTCTT 59.512 33.333 0.00 0.00 0.00 2.52
3097 5161 6.972901 GGACACGAATTTGTTCTTTCTTTTCT 59.027 34.615 0.00 0.00 0.00 2.52
3098 5162 6.198403 GGGACACGAATTTGTTCTTTCTTTTC 59.802 38.462 0.00 0.00 0.00 2.29
3099 5163 6.040247 GGGACACGAATTTGTTCTTTCTTTT 58.960 36.000 0.00 0.00 0.00 2.27
3100 5164 5.359860 AGGGACACGAATTTGTTCTTTCTTT 59.640 36.000 0.00 0.00 0.00 2.52
3101 5165 4.887655 AGGGACACGAATTTGTTCTTTCTT 59.112 37.500 0.00 0.00 0.00 2.52
3102 5166 4.461198 AGGGACACGAATTTGTTCTTTCT 58.539 39.130 0.00 0.00 0.00 2.52
3103 5167 4.515567 AGAGGGACACGAATTTGTTCTTTC 59.484 41.667 0.00 1.59 0.00 2.62
3104 5168 4.275936 CAGAGGGACACGAATTTGTTCTTT 59.724 41.667 0.00 0.00 0.00 2.52
3105 5169 3.815401 CAGAGGGACACGAATTTGTTCTT 59.185 43.478 0.00 0.00 0.00 2.52
3106 5170 3.403038 CAGAGGGACACGAATTTGTTCT 58.597 45.455 0.00 0.00 0.00 3.01
3107 5171 2.484264 CCAGAGGGACACGAATTTGTTC 59.516 50.000 0.00 0.00 35.59 3.18
3108 5172 2.105821 TCCAGAGGGACACGAATTTGTT 59.894 45.455 0.00 0.00 38.64 2.83
3109 5173 1.697432 TCCAGAGGGACACGAATTTGT 59.303 47.619 0.00 0.00 38.64 2.83
3110 5174 2.472695 TCCAGAGGGACACGAATTTG 57.527 50.000 0.00 0.00 38.64 2.32
3120 5184 1.304217 GGTCGAGTGTCCAGAGGGA 60.304 63.158 0.00 0.00 42.29 4.20
3121 5185 0.034380 TAGGTCGAGTGTCCAGAGGG 60.034 60.000 0.00 0.00 0.00 4.30
3122 5186 1.096416 GTAGGTCGAGTGTCCAGAGG 58.904 60.000 0.00 0.00 0.00 3.69
3123 5187 1.469308 GTGTAGGTCGAGTGTCCAGAG 59.531 57.143 0.00 0.00 0.00 3.35
3124 5188 1.531423 GTGTAGGTCGAGTGTCCAGA 58.469 55.000 0.00 0.00 0.00 3.86
3125 5189 0.168348 CGTGTAGGTCGAGTGTCCAG 59.832 60.000 0.00 0.00 0.00 3.86
3126 5190 0.535780 ACGTGTAGGTCGAGTGTCCA 60.536 55.000 0.00 0.00 0.00 4.02
3127 5191 0.109873 CACGTGTAGGTCGAGTGTCC 60.110 60.000 7.58 0.00 0.00 4.02
3128 5192 0.870393 TCACGTGTAGGTCGAGTGTC 59.130 55.000 16.51 0.00 34.71 3.67
3129 5193 0.873054 CTCACGTGTAGGTCGAGTGT 59.127 55.000 16.51 0.00 34.71 3.55
3130 5194 1.136029 GTCTCACGTGTAGGTCGAGTG 60.136 57.143 16.51 0.00 0.00 3.51
3131 5195 1.155042 GTCTCACGTGTAGGTCGAGT 58.845 55.000 16.51 0.00 0.00 4.18
3132 5196 0.094901 CGTCTCACGTGTAGGTCGAG 59.905 60.000 16.51 3.49 36.74 4.04
3133 5197 0.319813 TCGTCTCACGTGTAGGTCGA 60.320 55.000 16.51 18.64 43.14 4.20
3134 5198 0.725686 ATCGTCTCACGTGTAGGTCG 59.274 55.000 16.51 17.07 43.14 4.79
3135 5199 1.202154 CCATCGTCTCACGTGTAGGTC 60.202 57.143 16.51 7.88 43.14 3.85
3136 5200 0.809385 CCATCGTCTCACGTGTAGGT 59.191 55.000 16.51 0.00 43.14 3.08
3137 5201 0.525668 GCCATCGTCTCACGTGTAGG 60.526 60.000 16.51 10.77 43.14 3.18
3138 5202 0.861866 CGCCATCGTCTCACGTGTAG 60.862 60.000 16.51 11.65 43.14 2.74
3139 5203 1.135939 CGCCATCGTCTCACGTGTA 59.864 57.895 16.51 2.02 43.14 2.90
3140 5204 2.126463 CGCCATCGTCTCACGTGT 60.126 61.111 16.51 0.00 43.14 4.49
3150 5214 4.884257 CACCCCCGTACGCCATCG 62.884 72.222 10.49 0.00 42.43 3.84
3161 5225 4.067913 CATGTTTGGCGCACCCCC 62.068 66.667 10.83 0.00 33.59 5.40
3162 5226 4.740431 GCATGTTTGGCGCACCCC 62.740 66.667 10.83 0.00 33.59 4.95
3163 5227 4.740431 GGCATGTTTGGCGCACCC 62.740 66.667 10.83 0.00 38.79 4.61
3170 5234 3.451894 GGCTCGGGGCATGTTTGG 61.452 66.667 2.81 0.00 44.01 3.28
3171 5235 2.676121 TGGCTCGGGGCATGTTTG 60.676 61.111 7.81 0.00 43.20 2.93
3182 5246 3.685214 CTCTCGAACCCGTGGCTCG 62.685 68.421 8.80 8.80 37.05 5.03
3183 5247 2.182030 CTCTCGAACCCGTGGCTC 59.818 66.667 0.00 0.00 37.05 4.70
3184 5248 2.282958 TCTCTCGAACCCGTGGCT 60.283 61.111 0.00 0.00 37.05 4.75
3185 5249 2.126031 GTCTCTCGAACCCGTGGC 60.126 66.667 0.00 0.00 37.05 5.01
3186 5250 2.178521 CGTCTCTCGAACCCGTGG 59.821 66.667 0.00 0.00 42.86 4.94
3187 5251 1.442184 CACGTCTCTCGAACCCGTG 60.442 63.158 10.71 10.71 42.19 4.94
3188 5252 2.952245 CACGTCTCTCGAACCCGT 59.048 61.111 0.00 0.00 42.86 5.28
3189 5253 2.504244 GCACGTCTCTCGAACCCG 60.504 66.667 0.00 0.00 42.86 5.28
3190 5254 1.078759 CATGCACGTCTCTCGAACCC 61.079 60.000 0.00 0.00 42.86 4.11
3191 5255 1.687494 GCATGCACGTCTCTCGAACC 61.687 60.000 14.21 0.00 42.86 3.62
3192 5256 1.008875 TGCATGCACGTCTCTCGAAC 61.009 55.000 18.46 0.00 42.86 3.95
3193 5257 0.108662 ATGCATGCACGTCTCTCGAA 60.109 50.000 25.37 0.00 42.86 3.71
3194 5258 0.803380 CATGCATGCACGTCTCTCGA 60.803 55.000 25.37 0.00 42.86 4.04
3195 5259 1.634753 CATGCATGCACGTCTCTCG 59.365 57.895 25.37 0.18 46.00 4.04
3219 5283 1.017701 CGAAACTAACCTCCGGGCAC 61.018 60.000 0.00 0.00 35.63 5.01
3220 5284 1.294138 CGAAACTAACCTCCGGGCA 59.706 57.895 0.00 0.00 35.63 5.36
3221 5285 0.738762 GACGAAACTAACCTCCGGGC 60.739 60.000 0.00 0.00 35.63 6.13
3222 5286 0.108472 GGACGAAACTAACCTCCGGG 60.108 60.000 0.00 0.00 38.88 5.73
3223 5287 0.604578 TGGACGAAACTAACCTCCGG 59.395 55.000 0.00 0.00 0.00 5.14
3224 5288 1.271656 ACTGGACGAAACTAACCTCCG 59.728 52.381 0.00 0.00 0.00 4.63
3225 5289 4.732672 ATACTGGACGAAACTAACCTCC 57.267 45.455 0.00 0.00 0.00 4.30
3226 5290 8.196103 AGAATTATACTGGACGAAACTAACCTC 58.804 37.037 0.00 0.00 0.00 3.85
3227 5291 8.075761 AGAATTATACTGGACGAAACTAACCT 57.924 34.615 0.00 0.00 0.00 3.50
3228 5292 8.713737 AAGAATTATACTGGACGAAACTAACC 57.286 34.615 0.00 0.00 0.00 2.85
3253 5317 0.810823 AAGTCGTCGTCCCGCAAAAA 60.811 50.000 0.00 0.00 0.00 1.94
3254 5318 0.810823 AAAGTCGTCGTCCCGCAAAA 60.811 50.000 0.00 0.00 0.00 2.44
3255 5319 0.810823 AAAAGTCGTCGTCCCGCAAA 60.811 50.000 0.00 0.00 0.00 3.68
3256 5320 1.216941 GAAAAGTCGTCGTCCCGCAA 61.217 55.000 0.00 0.00 0.00 4.85
3257 5321 1.662446 GAAAAGTCGTCGTCCCGCA 60.662 57.895 0.00 0.00 0.00 5.69
3258 5322 1.372623 AGAAAAGTCGTCGTCCCGC 60.373 57.895 0.00 0.00 0.00 6.13
3259 5323 1.007336 CCAGAAAAGTCGTCGTCCCG 61.007 60.000 0.00 0.00 0.00 5.14
3260 5324 0.033090 ACCAGAAAAGTCGTCGTCCC 59.967 55.000 0.00 0.00 0.00 4.46
3261 5325 1.137513 CACCAGAAAAGTCGTCGTCC 58.862 55.000 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.