Multiple sequence alignment - TraesCS6A01G406800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G406800 chr6A 100.000 4190 0 0 1 4190 611900658 611904847 0.000000e+00 7738
1 TraesCS6A01G406800 chr6A 97.823 1240 27 0 1201 2440 125260090 125261329 0.000000e+00 2141
2 TraesCS6A01G406800 chr6A 85.724 1485 189 16 1187 2654 612171478 612170000 0.000000e+00 1546
3 TraesCS6A01G406800 chr6A 93.327 1004 19 16 2471 3427 125261328 125262330 0.000000e+00 1439
4 TraesCS6A01G406800 chr6A 85.714 1015 110 23 1662 2653 612291719 612292721 0.000000e+00 1038
5 TraesCS6A01G406800 chr6A 98.172 547 9 1 31 576 611888242 611888788 0.000000e+00 953
6 TraesCS6A01G406800 chr6A 94.473 579 28 4 1 576 26851569 26852146 0.000000e+00 889
7 TraesCS6A01G406800 chr6A 94.310 580 29 4 1 576 21029551 21030130 0.000000e+00 885
8 TraesCS6A01G406800 chr6A 93.782 579 33 3 1 576 32849244 32849822 0.000000e+00 867
9 TraesCS6A01G406800 chr6A 93.448 580 34 4 1 576 26672605 26673184 0.000000e+00 857
10 TraesCS6A01G406800 chr6A 93.426 578 35 3 1 576 21694990 21695566 0.000000e+00 854
11 TraesCS6A01G406800 chr6A 81.712 853 105 31 874 1708 612290913 612291732 0.000000e+00 664
12 TraesCS6A01G406800 chr6A 92.342 444 10 5 3435 3854 125262438 125262881 9.960000e-171 610
13 TraesCS6A01G406800 chr6A 95.745 329 14 0 576 904 125259289 125259617 7.980000e-147 531
14 TraesCS6A01G406800 chr6A 97.351 302 7 1 903 1204 125259710 125260010 2.890000e-141 512
15 TraesCS6A01G406800 chr6A 91.573 356 27 2 576 930 612109973 612109620 4.870000e-134 488
16 TraesCS6A01G406800 chr6A 87.955 357 24 4 576 930 613078871 613079210 1.810000e-108 403
17 TraesCS6A01G406800 chr6A 79.043 606 106 14 2707 3299 612301555 612302152 3.040000e-106 396
18 TraesCS6A01G406800 chr6A 84.911 338 37 12 3863 4190 161946110 161946443 3.120000e-86 329
19 TraesCS6A01G406800 chr6A 79.821 446 74 7 2731 3175 612169843 612169413 1.130000e-80 311
20 TraesCS6A01G406800 chr6B 86.225 1677 182 25 1721 3353 711756458 711758129 0.000000e+00 1772
21 TraesCS6A01G406800 chr6B 84.895 1708 202 29 969 2654 711334174 711332501 0.000000e+00 1674
22 TraesCS6A01G406800 chr6B 83.314 1708 240 34 969 2654 710684333 710682649 0.000000e+00 1533
23 TraesCS6A01G406800 chr6B 85.135 962 128 10 1704 2653 710642124 710641166 0.000000e+00 970
24 TraesCS6A01G406800 chr6B 83.607 488 47 16 576 1055 710643353 710642891 1.080000e-115 427
25 TraesCS6A01G406800 chr6B 82.287 446 76 3 2732 3175 711332347 711331903 2.360000e-102 383
26 TraesCS6A01G406800 chr6B 81.206 431 78 3 2732 3160 710909740 710910169 1.120000e-90 344
27 TraesCS6A01G406800 chr6B 84.503 342 39 9 703 1037 711755541 711755875 4.040000e-85 326
28 TraesCS6A01G406800 chr6B 81.701 388 69 2 2774 3160 711382702 711383088 5.230000e-84 322
29 TraesCS6A01G406800 chr6B 79.175 509 45 28 576 1040 711237913 711237422 3.170000e-76 296
30 TraesCS6A01G406800 chr6B 79.212 457 58 25 1153 1603 711756029 711756454 2.470000e-72 283
31 TraesCS6A01G406800 chr6B 88.696 230 20 4 706 931 711709499 711709726 4.130000e-70 276
32 TraesCS6A01G406800 chr6B 89.320 206 22 0 722 927 711876955 711877160 4.160000e-65 259
33 TraesCS6A01G406800 chr6B 82.028 217 39 0 1314 1530 711359913 711360129 7.150000e-43 185
34 TraesCS6A01G406800 chr6D 82.506 1652 244 31 1704 3322 465966321 465964682 0.000000e+00 1408
35 TraesCS6A01G406800 chr6D 84.478 1398 182 18 1284 2651 466227298 466225906 0.000000e+00 1347
36 TraesCS6A01G406800 chr6D 86.673 1013 102 21 1662 2653 466329580 466330580 0.000000e+00 1092
37 TraesCS6A01G406800 chr6D 85.181 965 120 17 1704 2653 465744259 465743303 0.000000e+00 968
38 TraesCS6A01G406800 chr6D 81.041 749 97 27 966 1708 466328884 466329593 4.730000e-154 555
39 TraesCS6A01G406800 chr6D 89.736 341 34 1 576 915 465745534 465745194 6.430000e-118 435
40 TraesCS6A01G406800 chr6D 81.614 446 79 3 2732 3175 466225747 466225303 2.380000e-97 366
41 TraesCS6A01G406800 chr6D 88.780 205 21 2 706 909 465348429 465348226 2.500000e-62 250
42 TraesCS6A01G406800 chr6D 79.612 309 40 12 2705 3013 465743214 465742929 2.550000e-47 200
43 TraesCS6A01G406800 chr6D 77.622 286 42 9 2732 3013 466817878 466817611 2.020000e-33 154
44 TraesCS6A01G406800 chr2A 96.028 579 21 2 1 578 778365559 778366136 0.000000e+00 941
45 TraesCS6A01G406800 chr2A 96.520 546 19 0 31 576 778353004 778353549 0.000000e+00 904
46 TraesCS6A01G406800 chr1A 93.772 578 33 3 1 576 9690573 9691149 0.000000e+00 865
47 TraesCS6A01G406800 chr5D 82.527 744 84 22 2707 3424 24575502 24574779 2.770000e-171 612
48 TraesCS6A01G406800 chr5D 87.537 337 27 11 3865 4190 313204214 313203882 3.950000e-100 375
49 TraesCS6A01G406800 chr5D 86.905 336 35 7 3863 4190 110652493 110652827 6.620000e-98 368
50 TraesCS6A01G406800 chr5D 85.165 182 19 3 932 1110 24616018 24615842 3.330000e-41 180
51 TraesCS6A01G406800 chr4A 89.181 342 33 1 578 915 594050263 594049922 1.390000e-114 424
52 TraesCS6A01G406800 chr4D 89.969 319 24 7 3879 4190 446640832 446640515 5.040000e-109 405
53 TraesCS6A01G406800 chr4D 87.021 339 28 12 3866 4190 70500806 70500470 6.620000e-98 368
54 TraesCS6A01G406800 chr3D 87.540 313 31 6 3886 4190 556067965 556068277 5.150000e-94 355
55 TraesCS6A01G406800 chr4B 85.882 340 32 12 3863 4190 177854536 177854201 8.620000e-92 348
56 TraesCS6A01G406800 chr4B 83.217 143 6 2 643 785 17488350 17488474 9.520000e-22 115
57 TraesCS6A01G406800 chr7A 85.088 342 35 14 3861 4190 625068219 625068556 6.710000e-88 335
58 TraesCS6A01G406800 chr7B 85.044 341 32 16 3863 4190 705945980 705945646 3.120000e-86 329


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G406800 chr6A 611900658 611904847 4189 False 7738.000000 7738 100.000000 1 4190 1 chr6A.!!$F8 4189
1 TraesCS6A01G406800 chr6A 125259289 125262881 3592 False 1046.600000 2141 95.317600 576 3854 5 chr6A.!!$F11 3278
2 TraesCS6A01G406800 chr6A 611888242 611888788 546 False 953.000000 953 98.172000 31 576 1 chr6A.!!$F7 545
3 TraesCS6A01G406800 chr6A 612169413 612171478 2065 True 928.500000 1546 82.772500 1187 3175 2 chr6A.!!$R2 1988
4 TraesCS6A01G406800 chr6A 26851569 26852146 577 False 889.000000 889 94.473000 1 576 1 chr6A.!!$F4 575
5 TraesCS6A01G406800 chr6A 21029551 21030130 579 False 885.000000 885 94.310000 1 576 1 chr6A.!!$F1 575
6 TraesCS6A01G406800 chr6A 32849244 32849822 578 False 867.000000 867 93.782000 1 576 1 chr6A.!!$F5 575
7 TraesCS6A01G406800 chr6A 26672605 26673184 579 False 857.000000 857 93.448000 1 576 1 chr6A.!!$F3 575
8 TraesCS6A01G406800 chr6A 21694990 21695566 576 False 854.000000 854 93.426000 1 576 1 chr6A.!!$F2 575
9 TraesCS6A01G406800 chr6A 612290913 612292721 1808 False 851.000000 1038 83.713000 874 2653 2 chr6A.!!$F12 1779
10 TraesCS6A01G406800 chr6A 612301555 612302152 597 False 396.000000 396 79.043000 2707 3299 1 chr6A.!!$F9 592
11 TraesCS6A01G406800 chr6B 710682649 710684333 1684 True 1533.000000 1533 83.314000 969 2654 1 chr6B.!!$R1 1685
12 TraesCS6A01G406800 chr6B 711331903 711334174 2271 True 1028.500000 1674 83.591000 969 3175 2 chr6B.!!$R4 2206
13 TraesCS6A01G406800 chr6B 711755541 711758129 2588 False 793.666667 1772 83.313333 703 3353 3 chr6B.!!$F6 2650
14 TraesCS6A01G406800 chr6B 710641166 710643353 2187 True 698.500000 970 84.371000 576 2653 2 chr6B.!!$R3 2077
15 TraesCS6A01G406800 chr6D 465964682 465966321 1639 True 1408.000000 1408 82.506000 1704 3322 1 chr6D.!!$R2 1618
16 TraesCS6A01G406800 chr6D 466225303 466227298 1995 True 856.500000 1347 83.046000 1284 3175 2 chr6D.!!$R5 1891
17 TraesCS6A01G406800 chr6D 466328884 466330580 1696 False 823.500000 1092 83.857000 966 2653 2 chr6D.!!$F1 1687
18 TraesCS6A01G406800 chr6D 465742929 465745534 2605 True 534.333333 968 84.843000 576 3013 3 chr6D.!!$R4 2437
19 TraesCS6A01G406800 chr2A 778365559 778366136 577 False 941.000000 941 96.028000 1 578 1 chr2A.!!$F2 577
20 TraesCS6A01G406800 chr2A 778353004 778353549 545 False 904.000000 904 96.520000 31 576 1 chr2A.!!$F1 545
21 TraesCS6A01G406800 chr1A 9690573 9691149 576 False 865.000000 865 93.772000 1 576 1 chr1A.!!$F1 575
22 TraesCS6A01G406800 chr5D 24574779 24575502 723 True 612.000000 612 82.527000 2707 3424 1 chr5D.!!$R1 717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
666 672 0.179073 AGTCCCCAATCGAATCAGCG 60.179 55.000 0.00 0.00 0.00 5.18 F
756 763 1.503542 AAGCAATCAAGCGGCTTCG 59.496 52.632 13.24 8.88 43.97 3.79 F
1628 2138 0.681175 AACTTTGGCCAATGCAGGAC 59.319 50.000 26.73 0.00 40.13 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1610 2120 0.178953 AGTCCTGCATTGGCCAAAGT 60.179 50.000 24.71 3.41 40.13 2.66 R
2400 3066 3.356290 ACAAGTGAAGCCAGAACAAAGT 58.644 40.909 0.00 0.00 0.00 2.66 R
3403 4209 2.242113 GATGCACTCATCGGCCATC 58.758 57.895 2.24 0.00 39.63 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
362 366 3.258622 GGGCTGGCGAACTCTATATAAGT 59.741 47.826 0.00 0.00 0.00 2.24
549 555 4.777896 GCCTCTTCATACATATCCCCTACA 59.222 45.833 0.00 0.00 0.00 2.74
634 640 0.704076 ACCAAATAAGCAGCTCCCCA 59.296 50.000 0.00 0.00 0.00 4.96
639 645 3.386932 AATAAGCAGCTCCCCATTTGA 57.613 42.857 0.00 0.00 0.00 2.69
666 672 0.179073 AGTCCCCAATCGAATCAGCG 60.179 55.000 0.00 0.00 0.00 5.18
756 763 1.503542 AAGCAATCAAGCGGCTTCG 59.496 52.632 13.24 8.88 43.97 3.79
848 856 5.414789 TCCGGATTACAATCAGAAACAGA 57.585 39.130 0.00 0.00 37.15 3.41
951 1070 3.350219 TTTTAAGAGGAGGCGAGCAAT 57.650 42.857 0.00 0.00 0.00 3.56
960 1079 1.687123 GAGGCGAGCAATAACTCCCTA 59.313 52.381 0.00 0.00 37.43 3.53
1037 1159 4.179579 GCGACGGGCTGCCAAATC 62.180 66.667 22.05 12.98 39.11 2.17
1342 1851 5.290158 GTGTATTTGAGTGTACCGTGGTATG 59.710 44.000 1.43 0.00 32.82 2.39
1357 1866 5.390885 CCGTGGTATGAACTCTGATTTGTTG 60.391 44.000 0.00 0.00 0.00 3.33
1610 2120 1.827789 AAAGCAGCTGTGGCCGAAA 60.828 52.632 16.64 0.00 39.73 3.46
1628 2138 0.681175 AACTTTGGCCAATGCAGGAC 59.319 50.000 26.73 0.00 40.13 3.85
2044 2707 6.762661 CCAAATCAGACTTTGTTTCCAACATT 59.237 34.615 0.00 0.00 41.79 2.71
2400 3066 7.741785 TCTGAAAAGGTAAGTCAGGTTGATTA 58.258 34.615 0.00 0.00 39.42 1.75
2447 3116 5.925397 CACTACTCATCCTATCACATGCTTC 59.075 44.000 0.00 0.00 0.00 3.86
2855 3621 2.351276 CAGGAACAAGGGGGTCCG 59.649 66.667 0.00 0.00 38.33 4.79
3172 3941 3.282021 AGCGATGATTATTGTGCAAGGT 58.718 40.909 0.00 0.00 0.00 3.50
3245 4026 4.142227 TGAGTACTCGATTGGGCTAGAAAC 60.142 45.833 17.85 0.00 0.00 2.78
3249 4031 3.008049 ACTCGATTGGGCTAGAAACAGTT 59.992 43.478 0.00 0.00 0.00 3.16
3403 4209 7.991084 ATAGTATTGGATCCATTGATGTGTG 57.009 36.000 17.06 0.00 0.00 3.82
3447 4357 9.229784 CAGCATCAGCACTATTTGTATTTTTAG 57.770 33.333 0.00 0.00 45.49 1.85
3503 4413 2.166459 TCTCTCCTGCTTGGTGATAACG 59.834 50.000 2.54 0.00 37.65 3.18
3504 4414 2.166459 CTCTCCTGCTTGGTGATAACGA 59.834 50.000 0.00 0.00 37.65 3.85
3505 4415 2.766263 TCTCCTGCTTGGTGATAACGAT 59.234 45.455 0.00 0.00 33.81 3.73
3588 4522 4.657408 TGGCCATGGCGTGCTGAA 62.657 61.111 29.90 6.78 43.06 3.02
3605 4539 3.851105 GCTGAATCGGATAATTGCTGCAC 60.851 47.826 0.00 0.00 0.00 4.57
3656 4590 8.863049 GTTTTGGCTATAAGATGAATGTTTGTG 58.137 33.333 0.00 0.00 0.00 3.33
3726 4660 4.560819 CAGTGACAACGATAAGAAGAGAGC 59.439 45.833 0.00 0.00 0.00 4.09
3806 4740 1.961277 CGCAGGATATTGCCGGTCC 60.961 63.158 1.90 0.60 41.01 4.46
3854 4788 2.744787 TTCTATTCGACGCGTAGGTC 57.255 50.000 13.97 0.00 0.00 3.85
3855 4789 0.940126 TCTATTCGACGCGTAGGTCC 59.060 55.000 13.97 0.00 33.30 4.46
3856 4790 0.040603 CTATTCGACGCGTAGGTCCC 60.041 60.000 13.97 0.00 33.30 4.46
3857 4791 0.464373 TATTCGACGCGTAGGTCCCT 60.464 55.000 13.97 0.00 33.30 4.20
3858 4792 0.464373 ATTCGACGCGTAGGTCCCTA 60.464 55.000 13.97 0.00 33.30 3.53
3859 4793 1.091771 TTCGACGCGTAGGTCCCTAG 61.092 60.000 13.97 0.00 33.30 3.02
3860 4794 1.522355 CGACGCGTAGGTCCCTAGA 60.522 63.158 13.97 0.00 33.30 2.43
3861 4795 1.770085 CGACGCGTAGGTCCCTAGAC 61.770 65.000 13.97 0.00 42.73 2.59
3862 4796 1.770085 GACGCGTAGGTCCCTAGACG 61.770 65.000 13.97 11.46 44.54 4.18
3863 4797 2.541120 CGCGTAGGTCCCTAGACGG 61.541 68.421 9.90 0.00 44.54 4.79
3864 4798 2.843352 GCGTAGGTCCCTAGACGGC 61.843 68.421 9.90 0.00 44.54 5.68
3865 4799 1.452651 CGTAGGTCCCTAGACGGCA 60.453 63.158 0.00 0.00 44.54 5.69
3866 4800 0.822532 CGTAGGTCCCTAGACGGCAT 60.823 60.000 0.00 0.00 44.54 4.40
3867 4801 1.411041 GTAGGTCCCTAGACGGCATT 58.589 55.000 0.00 0.00 44.54 3.56
3868 4802 1.761198 GTAGGTCCCTAGACGGCATTT 59.239 52.381 0.00 0.00 44.54 2.32
3869 4803 0.831307 AGGTCCCTAGACGGCATTTC 59.169 55.000 0.00 0.00 44.54 2.17
3870 4804 0.179054 GGTCCCTAGACGGCATTTCC 60.179 60.000 0.00 0.00 44.54 3.13
3871 4805 0.831307 GTCCCTAGACGGCATTTCCT 59.169 55.000 0.00 0.00 32.18 3.36
3872 4806 2.037144 GTCCCTAGACGGCATTTCCTA 58.963 52.381 0.00 0.00 32.18 2.94
3873 4807 2.633481 GTCCCTAGACGGCATTTCCTAT 59.367 50.000 0.00 0.00 32.18 2.57
3874 4808 3.071167 GTCCCTAGACGGCATTTCCTATT 59.929 47.826 0.00 0.00 32.18 1.73
3875 4809 3.714798 TCCCTAGACGGCATTTCCTATTT 59.285 43.478 0.00 0.00 0.00 1.40
3876 4810 3.815401 CCCTAGACGGCATTTCCTATTTG 59.185 47.826 0.00 0.00 0.00 2.32
3877 4811 3.815401 CCTAGACGGCATTTCCTATTTGG 59.185 47.826 0.00 0.00 37.10 3.28
3878 4812 2.024414 AGACGGCATTTCCTATTTGGC 58.976 47.619 0.00 0.00 35.26 4.52
3880 4814 3.272766 GGCATTTCCTATTTGGCGC 57.727 52.632 0.00 0.00 35.26 6.53
3881 4815 0.249447 GGCATTTCCTATTTGGCGCC 60.249 55.000 22.73 22.73 35.26 6.53
3882 4816 0.459489 GCATTTCCTATTTGGCGCCA 59.541 50.000 29.03 29.03 35.26 5.69
3883 4817 1.802508 GCATTTCCTATTTGGCGCCAC 60.803 52.381 32.95 9.37 35.26 5.01
3884 4818 1.476085 CATTTCCTATTTGGCGCCACA 59.524 47.619 32.95 25.88 35.26 4.17
3885 4819 1.173043 TTTCCTATTTGGCGCCACAG 58.827 50.000 32.95 25.01 35.26 3.66
3886 4820 0.679640 TTCCTATTTGGCGCCACAGG 60.680 55.000 31.67 31.67 35.26 4.00
3887 4821 2.774799 CCTATTTGGCGCCACAGGC 61.775 63.158 32.95 0.00 46.75 4.85
3896 4830 3.431725 GCCACAGGCGCCAGTAAC 61.432 66.667 31.54 18.00 39.62 2.50
3897 4831 3.118454 CCACAGGCGCCAGTAACG 61.118 66.667 31.54 15.01 0.00 3.18
3898 4832 2.357034 CACAGGCGCCAGTAACGT 60.357 61.111 31.54 12.40 0.00 3.99
3899 4833 2.357034 ACAGGCGCCAGTAACGTG 60.357 61.111 31.54 18.75 0.00 4.49
3900 4834 3.788766 CAGGCGCCAGTAACGTGC 61.789 66.667 31.54 0.00 35.99 5.34
3901 4835 4.308458 AGGCGCCAGTAACGTGCA 62.308 61.111 31.54 0.00 38.50 4.57
3902 4836 3.124921 GGCGCCAGTAACGTGCAT 61.125 61.111 24.80 0.00 38.50 3.96
3903 4837 2.686816 GGCGCCAGTAACGTGCATT 61.687 57.895 24.80 0.00 38.50 3.56
3904 4838 1.209127 GCGCCAGTAACGTGCATTT 59.791 52.632 0.00 0.00 36.73 2.32
3905 4839 0.386731 GCGCCAGTAACGTGCATTTT 60.387 50.000 0.00 0.00 36.73 1.82
3906 4840 1.326576 CGCCAGTAACGTGCATTTTG 58.673 50.000 0.00 0.00 0.00 2.44
3907 4841 1.334599 CGCCAGTAACGTGCATTTTGT 60.335 47.619 0.00 0.00 0.00 2.83
3908 4842 2.096169 CGCCAGTAACGTGCATTTTGTA 60.096 45.455 0.00 0.00 0.00 2.41
3909 4843 3.607310 CGCCAGTAACGTGCATTTTGTAA 60.607 43.478 0.00 0.00 0.00 2.41
3910 4844 4.291783 GCCAGTAACGTGCATTTTGTAAA 58.708 39.130 0.00 0.00 0.00 2.01
3911 4845 4.147479 GCCAGTAACGTGCATTTTGTAAAC 59.853 41.667 0.00 0.00 0.00 2.01
3912 4846 5.516090 CCAGTAACGTGCATTTTGTAAACT 58.484 37.500 0.00 0.00 0.00 2.66
3913 4847 5.398122 CCAGTAACGTGCATTTTGTAAACTG 59.602 40.000 0.00 5.02 33.19 3.16
3914 4848 5.398122 CAGTAACGTGCATTTTGTAAACTGG 59.602 40.000 0.00 0.00 31.36 4.00
3915 4849 2.738135 ACGTGCATTTTGTAAACTGGC 58.262 42.857 0.00 0.00 0.00 4.85
3916 4850 1.713404 CGTGCATTTTGTAAACTGGCG 59.287 47.619 0.00 0.00 0.00 5.69
3917 4851 1.455408 GTGCATTTTGTAAACTGGCGC 59.545 47.619 0.00 0.00 0.00 6.53
3918 4852 1.067693 GCATTTTGTAAACTGGCGCC 58.932 50.000 22.73 22.73 0.00 6.53
3919 4853 1.336795 GCATTTTGTAAACTGGCGCCT 60.337 47.619 29.70 9.99 0.00 5.52
3920 4854 2.595386 CATTTTGTAAACTGGCGCCTC 58.405 47.619 29.70 11.18 0.00 4.70
3921 4855 1.975660 TTTTGTAAACTGGCGCCTCT 58.024 45.000 29.70 9.60 0.00 3.69
3922 4856 1.234821 TTTGTAAACTGGCGCCTCTG 58.765 50.000 29.70 19.52 0.00 3.35
3923 4857 0.394938 TTGTAAACTGGCGCCTCTGA 59.605 50.000 29.70 5.90 0.00 3.27
3924 4858 0.320421 TGTAAACTGGCGCCTCTGAC 60.320 55.000 29.70 18.56 0.00 3.51
3925 4859 1.080093 TAAACTGGCGCCTCTGACG 60.080 57.895 29.70 11.08 0.00 4.35
3926 4860 1.812686 TAAACTGGCGCCTCTGACGT 61.813 55.000 29.70 11.73 0.00 4.34
3927 4861 3.575351 AACTGGCGCCTCTGACGTC 62.575 63.158 29.70 9.11 35.23 4.34
3928 4862 4.803426 CTGGCGCCTCTGACGTCC 62.803 72.222 29.70 0.00 33.26 4.79
3931 4865 3.807538 GCGCCTCTGACGTCCGTA 61.808 66.667 14.12 0.00 0.00 4.02
3932 4866 2.872557 CGCCTCTGACGTCCGTAA 59.127 61.111 14.12 0.00 0.00 3.18
3933 4867 1.210931 CGCCTCTGACGTCCGTAAA 59.789 57.895 14.12 0.00 0.00 2.01
3934 4868 0.179145 CGCCTCTGACGTCCGTAAAT 60.179 55.000 14.12 0.00 0.00 1.40
3935 4869 1.278238 GCCTCTGACGTCCGTAAATG 58.722 55.000 14.12 0.00 0.00 2.32
3936 4870 1.922570 CCTCTGACGTCCGTAAATGG 58.077 55.000 14.12 2.01 0.00 3.16
3937 4871 1.470979 CCTCTGACGTCCGTAAATGGG 60.471 57.143 14.12 0.46 0.00 4.00
3938 4872 0.108520 TCTGACGTCCGTAAATGGGC 60.109 55.000 14.12 0.00 0.00 5.36
3939 4873 1.078988 TGACGTCCGTAAATGGGCC 60.079 57.895 14.12 0.00 0.00 5.80
3940 4874 2.125431 ACGTCCGTAAATGGGCCG 60.125 61.111 0.00 0.00 0.00 6.13
3941 4875 2.893404 CGTCCGTAAATGGGCCGG 60.893 66.667 0.00 0.00 43.03 6.13
3942 4876 3.206957 GTCCGTAAATGGGCCGGC 61.207 66.667 21.18 21.18 41.46 6.13
3943 4877 4.493049 TCCGTAAATGGGCCGGCC 62.493 66.667 38.57 38.57 41.46 6.13
3960 4894 2.819595 CCATCTGGGCGTCCGTTG 60.820 66.667 0.00 1.79 35.24 4.10
3961 4895 2.264480 CATCTGGGCGTCCGTTGA 59.736 61.111 0.00 0.00 35.24 3.18
3962 4896 1.153369 CATCTGGGCGTCCGTTGAT 60.153 57.895 0.00 2.02 35.24 2.57
3963 4897 0.744414 CATCTGGGCGTCCGTTGATT 60.744 55.000 0.00 0.00 35.24 2.57
3964 4898 0.035439 ATCTGGGCGTCCGTTGATTT 60.035 50.000 0.00 0.00 35.24 2.17
3965 4899 0.250553 TCTGGGCGTCCGTTGATTTT 60.251 50.000 0.00 0.00 35.24 1.82
3966 4900 0.596082 CTGGGCGTCCGTTGATTTTT 59.404 50.000 0.00 0.00 35.24 1.94
4035 4969 9.958234 TCGAAATTTAATGAACATTTGTCTTGA 57.042 25.926 5.37 0.00 32.50 3.02
4043 4977 8.542497 AATGAACATTTGTCTTGAAATGGATG 57.458 30.769 9.99 0.00 44.38 3.51
4044 4978 7.287512 TGAACATTTGTCTTGAAATGGATGA 57.712 32.000 9.99 0.00 44.38 2.92
4045 4979 7.724287 TGAACATTTGTCTTGAAATGGATGAA 58.276 30.769 9.99 0.00 44.38 2.57
4046 4980 7.652909 TGAACATTTGTCTTGAAATGGATGAAC 59.347 33.333 9.99 0.00 44.38 3.18
4047 4981 7.294017 ACATTTGTCTTGAAATGGATGAACT 57.706 32.000 9.99 0.00 44.38 3.01
4048 4982 7.729116 ACATTTGTCTTGAAATGGATGAACTT 58.271 30.769 9.99 0.00 44.38 2.66
4049 4983 8.206189 ACATTTGTCTTGAAATGGATGAACTTT 58.794 29.630 9.99 0.00 44.38 2.66
4050 4984 9.048446 CATTTGTCTTGAAATGGATGAACTTTT 57.952 29.630 0.00 0.00 38.94 2.27
4051 4985 9.617523 ATTTGTCTTGAAATGGATGAACTTTTT 57.382 25.926 0.00 0.00 0.00 1.94
4077 5011 9.965824 TTGATTTATGAACTTTCTTTCAGTTCC 57.034 29.630 9.70 0.00 46.63 3.62
4078 5012 9.130661 TGATTTATGAACTTTCTTTCAGTTCCA 57.869 29.630 9.70 0.56 46.63 3.53
4080 5014 9.918630 ATTTATGAACTTTCTTTCAGTTCCATG 57.081 29.630 9.70 0.00 46.63 3.66
4081 5015 8.690203 TTATGAACTTTCTTTCAGTTCCATGA 57.310 30.769 9.70 0.30 46.63 3.07
4082 5016 7.587037 ATGAACTTTCTTTCAGTTCCATGAA 57.413 32.000 9.70 0.00 46.63 2.57
4083 5017 6.795399 TGAACTTTCTTTCAGTTCCATGAAC 58.205 36.000 9.70 0.00 46.63 3.18
4084 5018 5.424121 ACTTTCTTTCAGTTCCATGAACG 57.576 39.130 0.00 0.00 45.96 3.95
4085 5019 4.881850 ACTTTCTTTCAGTTCCATGAACGT 59.118 37.500 0.00 0.00 45.96 3.99
4086 5020 5.357032 ACTTTCTTTCAGTTCCATGAACGTT 59.643 36.000 0.00 0.00 45.96 3.99
4087 5021 5.828299 TTCTTTCAGTTCCATGAACGTTT 57.172 34.783 0.46 0.00 45.96 3.60
4088 5022 5.828299 TCTTTCAGTTCCATGAACGTTTT 57.172 34.783 0.46 0.00 45.96 2.43
4089 5023 6.202516 TCTTTCAGTTCCATGAACGTTTTT 57.797 33.333 0.46 0.00 45.96 1.94
4139 5073 9.558396 AATTTGATGAACTTTTGCTAAATTGGA 57.442 25.926 0.00 0.00 0.00 3.53
4140 5074 9.729281 ATTTGATGAACTTTTGCTAAATTGGAT 57.271 25.926 0.00 0.00 0.00 3.41
4141 5075 8.537049 TTGATGAACTTTTGCTAAATTGGATG 57.463 30.769 0.00 0.00 0.00 3.51
4142 5076 7.894708 TGATGAACTTTTGCTAAATTGGATGA 58.105 30.769 0.00 0.00 0.00 2.92
4143 5077 8.366401 TGATGAACTTTTGCTAAATTGGATGAA 58.634 29.630 0.00 0.00 0.00 2.57
4144 5078 7.945033 TGAACTTTTGCTAAATTGGATGAAC 57.055 32.000 0.00 0.00 0.00 3.18
4145 5079 7.725251 TGAACTTTTGCTAAATTGGATGAACT 58.275 30.769 0.00 0.00 0.00 3.01
4146 5080 8.203485 TGAACTTTTGCTAAATTGGATGAACTT 58.797 29.630 0.00 0.00 0.00 2.66
4147 5081 8.962884 AACTTTTGCTAAATTGGATGAACTTT 57.037 26.923 0.00 0.00 0.00 2.66
4148 5082 8.962884 ACTTTTGCTAAATTGGATGAACTTTT 57.037 26.923 0.00 0.00 0.00 2.27
4149 5083 9.394767 ACTTTTGCTAAATTGGATGAACTTTTT 57.605 25.926 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 115 4.141228 AGTGGGATATCTCCGAGTTGTCTA 60.141 45.833 0.00 0.00 43.11 2.59
541 547 4.332683 AGTCTGACAGTAATGTAGGGGA 57.667 45.455 10.88 0.00 0.00 4.81
549 555 5.475909 TCGTGGTTCTAAGTCTGACAGTAAT 59.524 40.000 10.88 0.00 0.00 1.89
634 640 1.078143 GGGACTGCGGCTCTCAAAT 60.078 57.895 0.00 0.00 0.00 2.32
639 645 3.011517 ATTGGGGACTGCGGCTCT 61.012 61.111 0.00 0.00 0.00 4.09
848 856 5.934625 CCGGATAATGAATTCGAAAGAGGAT 59.065 40.000 0.00 0.00 39.08 3.24
951 1070 4.684724 ACTGATGTCCACTTAGGGAGTTA 58.315 43.478 0.00 0.00 37.71 2.24
960 1079 3.403038 CTCCGAAAACTGATGTCCACTT 58.597 45.455 0.00 0.00 0.00 3.16
1225 1723 6.727824 TGCAGCTTTGATCTACTTTAAGAC 57.272 37.500 0.00 0.00 0.00 3.01
1342 1851 2.029918 GCACCCCAACAAATCAGAGTTC 60.030 50.000 0.00 0.00 0.00 3.01
1610 2120 0.178953 AGTCCTGCATTGGCCAAAGT 60.179 50.000 24.71 3.41 40.13 2.66
2400 3066 3.356290 ACAAGTGAAGCCAGAACAAAGT 58.644 40.909 0.00 0.00 0.00 2.66
2447 3116 3.731652 TGAACCCAAATCTGCAACAAG 57.268 42.857 0.00 0.00 0.00 3.16
2653 3328 6.839454 TCTAGGTAGGAACATACTGTAGAGG 58.161 44.000 0.00 0.00 0.00 3.69
2657 3360 7.448915 AGACTCTAGGTAGGAACATACTGTA 57.551 40.000 0.00 0.00 0.00 2.74
3172 3941 5.163343 ACTGCCACTAACAGTCTTCAGTTAA 60.163 40.000 0.00 0.00 45.06 2.01
3245 4026 5.059404 AGGAAATGCGTATTTGGAAACTG 57.941 39.130 16.49 0.00 36.66 3.16
3382 4188 6.294342 CCATCACACATCAATGGATCCAATAC 60.294 42.308 20.67 0.00 42.13 1.89
3403 4209 2.242113 GATGCACTCATCGGCCATC 58.758 57.895 2.24 0.00 39.63 3.51
3427 4237 7.968405 GTCACCCTAAAAATACAAATAGTGCTG 59.032 37.037 0.00 0.00 0.00 4.41
3428 4238 7.122204 GGTCACCCTAAAAATACAAATAGTGCT 59.878 37.037 0.00 0.00 0.00 4.40
3429 4239 7.094118 TGGTCACCCTAAAAATACAAATAGTGC 60.094 37.037 0.00 0.00 0.00 4.40
3430 4240 8.343168 TGGTCACCCTAAAAATACAAATAGTG 57.657 34.615 0.00 0.00 0.00 2.74
3431 4241 8.966868 CATGGTCACCCTAAAAATACAAATAGT 58.033 33.333 0.00 0.00 0.00 2.12
3432 4242 8.966868 ACATGGTCACCCTAAAAATACAAATAG 58.033 33.333 0.00 0.00 0.00 1.73
3447 4357 3.281727 ACACATCATACATGGTCACCC 57.718 47.619 0.00 0.00 0.00 4.61
3475 4385 3.686726 CACCAAGCAGGAGAGACAATTAC 59.313 47.826 1.83 0.00 41.22 1.89
3588 4522 2.874701 GACAGTGCAGCAATTATCCGAT 59.125 45.455 0.00 0.00 0.00 4.18
3605 4539 4.936411 ACAGCTGATTCTCTCAAATGACAG 59.064 41.667 23.35 0.00 32.14 3.51
3656 4590 1.264288 CAAGTGAGAACTTGGCCGAAC 59.736 52.381 10.14 0.00 42.34 3.95
3751 4685 3.751175 TCTGTTGCGCAAAAGCTAGTTAT 59.249 39.130 31.47 0.00 38.13 1.89
3755 4689 1.722751 CGTCTGTTGCGCAAAAGCTAG 60.723 52.381 31.47 21.12 38.13 3.42
3803 4737 2.495084 GGAAGGTCAACAACTCAGGAC 58.505 52.381 0.00 0.00 0.00 3.85
3806 4740 2.135933 GACGGAAGGTCAACAACTCAG 58.864 52.381 0.00 0.00 45.36 3.35
3854 4788 3.771577 AATAGGAAATGCCGTCTAGGG 57.228 47.619 0.00 0.00 43.43 3.53
3855 4789 3.815401 CCAAATAGGAAATGCCGTCTAGG 59.185 47.826 0.00 0.00 43.43 3.02
3856 4790 3.251004 GCCAAATAGGAAATGCCGTCTAG 59.749 47.826 0.00 0.00 43.43 2.43
3857 4791 3.211045 GCCAAATAGGAAATGCCGTCTA 58.789 45.455 0.00 0.00 43.43 2.59
3858 4792 2.024414 GCCAAATAGGAAATGCCGTCT 58.976 47.619 0.00 0.00 43.43 4.18
3859 4793 1.268539 CGCCAAATAGGAAATGCCGTC 60.269 52.381 0.00 0.00 43.43 4.79
3860 4794 0.738389 CGCCAAATAGGAAATGCCGT 59.262 50.000 0.00 0.00 43.43 5.68
3861 4795 0.594796 GCGCCAAATAGGAAATGCCG 60.595 55.000 0.00 0.00 43.43 5.69
3862 4796 0.249447 GGCGCCAAATAGGAAATGCC 60.249 55.000 24.80 0.00 41.22 4.40
3863 4797 0.459489 TGGCGCCAAATAGGAAATGC 59.541 50.000 30.74 0.00 41.22 3.56
3864 4798 1.476085 TGTGGCGCCAAATAGGAAATG 59.524 47.619 34.66 0.00 41.22 2.32
3865 4799 1.750778 CTGTGGCGCCAAATAGGAAAT 59.249 47.619 34.66 0.00 41.22 2.17
3866 4800 1.173043 CTGTGGCGCCAAATAGGAAA 58.827 50.000 34.66 0.58 41.22 3.13
3867 4801 0.679640 CCTGTGGCGCCAAATAGGAA 60.680 55.000 35.07 16.08 41.22 3.36
3868 4802 1.077787 CCTGTGGCGCCAAATAGGA 60.078 57.895 35.07 12.48 41.22 2.94
3869 4803 2.774799 GCCTGTGGCGCCAAATAGG 61.775 63.158 34.47 34.47 39.62 2.57
3870 4804 2.800736 GCCTGTGGCGCCAAATAG 59.199 61.111 34.66 27.31 39.62 1.73
3879 4813 3.431725 GTTACTGGCGCCTGTGGC 61.432 66.667 39.58 29.09 46.75 5.01
3880 4814 3.118454 CGTTACTGGCGCCTGTGG 61.118 66.667 39.58 26.96 0.00 4.17
3881 4815 2.357034 ACGTTACTGGCGCCTGTG 60.357 61.111 39.58 28.26 0.00 3.66
3882 4816 2.357034 CACGTTACTGGCGCCTGT 60.357 61.111 36.40 36.40 0.00 4.00
3883 4817 3.788766 GCACGTTACTGGCGCCTG 61.789 66.667 29.48 29.48 0.00 4.85
3884 4818 3.605749 ATGCACGTTACTGGCGCCT 62.606 57.895 29.70 11.31 0.00 5.52
3885 4819 2.195123 AAATGCACGTTACTGGCGCC 62.195 55.000 22.73 22.73 0.00 6.53
3886 4820 0.386731 AAAATGCACGTTACTGGCGC 60.387 50.000 0.00 0.00 0.00 6.53
3887 4821 1.326576 CAAAATGCACGTTACTGGCG 58.673 50.000 0.00 0.00 0.00 5.69
3888 4822 2.415697 ACAAAATGCACGTTACTGGC 57.584 45.000 0.00 0.00 0.00 4.85
3889 4823 5.398122 CAGTTTACAAAATGCACGTTACTGG 59.602 40.000 0.00 0.00 0.00 4.00
3890 4824 5.398122 CCAGTTTACAAAATGCACGTTACTG 59.602 40.000 0.00 2.55 33.03 2.74
3891 4825 5.516090 CCAGTTTACAAAATGCACGTTACT 58.484 37.500 0.00 0.00 33.03 2.24
3892 4826 4.147479 GCCAGTTTACAAAATGCACGTTAC 59.853 41.667 0.00 0.00 33.03 2.50
3893 4827 4.291783 GCCAGTTTACAAAATGCACGTTA 58.708 39.130 0.00 0.00 33.03 3.18
3894 4828 3.120041 GCCAGTTTACAAAATGCACGTT 58.880 40.909 0.00 0.00 33.03 3.99
3895 4829 2.738135 GCCAGTTTACAAAATGCACGT 58.262 42.857 0.00 0.00 33.03 4.49
3896 4830 1.713404 CGCCAGTTTACAAAATGCACG 59.287 47.619 0.00 0.32 33.03 5.34
3897 4831 1.455408 GCGCCAGTTTACAAAATGCAC 59.545 47.619 0.00 0.00 33.03 4.57
3898 4832 1.604185 GGCGCCAGTTTACAAAATGCA 60.604 47.619 24.80 0.00 33.03 3.96
3899 4833 1.067693 GGCGCCAGTTTACAAAATGC 58.932 50.000 24.80 0.00 33.03 3.56
3900 4834 2.228822 AGAGGCGCCAGTTTACAAAATG 59.771 45.455 31.54 0.00 34.07 2.32
3901 4835 2.228822 CAGAGGCGCCAGTTTACAAAAT 59.771 45.455 31.54 1.71 0.00 1.82
3902 4836 1.606668 CAGAGGCGCCAGTTTACAAAA 59.393 47.619 31.54 0.00 0.00 2.44
3903 4837 1.202710 TCAGAGGCGCCAGTTTACAAA 60.203 47.619 31.54 0.22 0.00 2.83
3904 4838 0.394938 TCAGAGGCGCCAGTTTACAA 59.605 50.000 31.54 1.91 0.00 2.41
3905 4839 0.320421 GTCAGAGGCGCCAGTTTACA 60.320 55.000 31.54 1.78 0.00 2.41
3906 4840 1.352156 CGTCAGAGGCGCCAGTTTAC 61.352 60.000 31.54 18.04 0.00 2.01
3907 4841 1.080093 CGTCAGAGGCGCCAGTTTA 60.080 57.895 31.54 6.83 0.00 2.01
3908 4842 2.357517 CGTCAGAGGCGCCAGTTT 60.358 61.111 31.54 7.63 0.00 2.66
3909 4843 3.575351 GACGTCAGAGGCGCCAGTT 62.575 63.158 31.54 8.11 0.00 3.16
3910 4844 4.057428 GACGTCAGAGGCGCCAGT 62.057 66.667 31.54 17.57 0.00 4.00
3911 4845 4.803426 GGACGTCAGAGGCGCCAG 62.803 72.222 31.54 18.31 0.00 4.85
3914 4848 2.807631 TTTACGGACGTCAGAGGCGC 62.808 60.000 22.71 0.00 0.00 6.53
3915 4849 0.179145 ATTTACGGACGTCAGAGGCG 60.179 55.000 22.71 15.45 0.00 5.52
3916 4850 1.278238 CATTTACGGACGTCAGAGGC 58.722 55.000 22.71 0.32 0.00 4.70
3917 4851 1.470979 CCCATTTACGGACGTCAGAGG 60.471 57.143 22.71 13.85 0.00 3.69
3918 4852 1.922570 CCCATTTACGGACGTCAGAG 58.077 55.000 22.71 12.56 0.00 3.35
3919 4853 0.108520 GCCCATTTACGGACGTCAGA 60.109 55.000 22.71 0.00 0.00 3.27
3920 4854 1.087771 GGCCCATTTACGGACGTCAG 61.088 60.000 18.91 16.61 0.00 3.51
3921 4855 1.078988 GGCCCATTTACGGACGTCA 60.079 57.895 18.91 0.00 0.00 4.35
3922 4856 3.803886 GGCCCATTTACGGACGTC 58.196 61.111 7.13 7.13 0.00 4.34
3943 4877 2.593468 ATCAACGGACGCCCAGATGG 62.593 60.000 0.00 0.00 37.09 3.51
3944 4878 0.744414 AATCAACGGACGCCCAGATG 60.744 55.000 0.00 0.00 0.00 2.90
3945 4879 0.035439 AAATCAACGGACGCCCAGAT 60.035 50.000 0.00 0.00 0.00 2.90
3946 4880 0.250553 AAAATCAACGGACGCCCAGA 60.251 50.000 0.00 0.00 0.00 3.86
3947 4881 0.596082 AAAAATCAACGGACGCCCAG 59.404 50.000 0.00 0.00 0.00 4.45
3948 4882 2.721945 AAAAATCAACGGACGCCCA 58.278 47.368 0.00 0.00 0.00 5.36
4009 4943 9.958234 TCAAGACAAATGTTCATTAAATTTCGA 57.042 25.926 0.00 0.00 0.00 3.71
4017 4951 9.642327 CATCCATTTCAAGACAAATGTTCATTA 57.358 29.630 5.45 0.00 40.71 1.90
4018 4952 8.369424 TCATCCATTTCAAGACAAATGTTCATT 58.631 29.630 5.45 0.00 40.71 2.57
4019 4953 7.898918 TCATCCATTTCAAGACAAATGTTCAT 58.101 30.769 5.45 0.00 40.71 2.57
4020 4954 7.287512 TCATCCATTTCAAGACAAATGTTCA 57.712 32.000 5.45 0.00 40.71 3.18
4021 4955 7.869429 AGTTCATCCATTTCAAGACAAATGTTC 59.131 33.333 5.45 0.00 40.71 3.18
4022 4956 7.729116 AGTTCATCCATTTCAAGACAAATGTT 58.271 30.769 5.45 0.00 40.71 2.71
4023 4957 7.294017 AGTTCATCCATTTCAAGACAAATGT 57.706 32.000 5.45 0.00 40.71 2.71
4024 4958 8.597662 AAAGTTCATCCATTTCAAGACAAATG 57.402 30.769 0.00 0.00 41.59 2.32
4025 4959 9.617523 AAAAAGTTCATCCATTTCAAGACAAAT 57.382 25.926 0.00 0.00 0.00 2.32
4061 4995 5.357032 ACGTTCATGGAACTGAAAGAAAGTT 59.643 36.000 7.43 0.00 40.05 2.66
4062 4996 4.881850 ACGTTCATGGAACTGAAAGAAAGT 59.118 37.500 7.43 0.00 40.05 2.66
4063 4997 5.424121 ACGTTCATGGAACTGAAAGAAAG 57.576 39.130 7.43 0.00 40.05 2.62
4064 4998 5.828299 AACGTTCATGGAACTGAAAGAAA 57.172 34.783 0.00 0.00 40.05 2.52
4065 4999 5.828299 AAACGTTCATGGAACTGAAAGAA 57.172 34.783 0.00 0.00 40.05 2.52
4066 5000 5.828299 AAAACGTTCATGGAACTGAAAGA 57.172 34.783 0.00 0.00 40.05 2.52
4113 5047 9.558396 TCCAATTTAGCAAAAGTTCATCAAATT 57.442 25.926 0.00 0.00 0.00 1.82
4114 5048 9.729281 ATCCAATTTAGCAAAAGTTCATCAAAT 57.271 25.926 0.00 0.00 0.00 2.32
4115 5049 8.991026 CATCCAATTTAGCAAAAGTTCATCAAA 58.009 29.630 0.00 0.00 0.00 2.69
4116 5050 8.366401 TCATCCAATTTAGCAAAAGTTCATCAA 58.634 29.630 0.00 0.00 0.00 2.57
4117 5051 7.894708 TCATCCAATTTAGCAAAAGTTCATCA 58.105 30.769 0.00 0.00 0.00 3.07
4118 5052 8.650714 GTTCATCCAATTTAGCAAAAGTTCATC 58.349 33.333 0.00 0.00 0.00 2.92
4119 5053 8.370182 AGTTCATCCAATTTAGCAAAAGTTCAT 58.630 29.630 0.00 0.00 0.00 2.57
4120 5054 7.725251 AGTTCATCCAATTTAGCAAAAGTTCA 58.275 30.769 0.00 0.00 0.00 3.18
4121 5055 8.593492 AAGTTCATCCAATTTAGCAAAAGTTC 57.407 30.769 0.00 0.00 0.00 3.01
4122 5056 8.962884 AAAGTTCATCCAATTTAGCAAAAGTT 57.037 26.923 0.00 0.00 0.00 2.66
4123 5057 8.962884 AAAAGTTCATCCAATTTAGCAAAAGT 57.037 26.923 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.