Multiple sequence alignment - TraesCS6A01G406200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G406200 chr6A 100.000 3982 0 0 2593 6574 611657985 611661966 0.000000e+00 7354.0
1 TraesCS6A01G406200 chr6A 100.000 2344 0 0 1 2344 611655393 611657736 0.000000e+00 4329.0
2 TraesCS6A01G406200 chr6A 93.333 60 4 0 2266 2325 611657540 611657599 9.080000e-14 89.8
3 TraesCS6A01G406200 chr6A 93.333 60 4 0 2148 2207 611657658 611657717 9.080000e-14 89.8
4 TraesCS6A01G406200 chr6A 89.231 65 6 1 5571 5635 63169980 63169917 5.460000e-11 80.5
5 TraesCS6A01G406200 chr6B 94.947 3206 104 20 2595 5759 709582425 709579237 0.000000e+00 4970.0
6 TraesCS6A01G406200 chr6B 89.692 941 69 9 1431 2344 709583400 709582461 0.000000e+00 1175.0
7 TraesCS6A01G406200 chr6B 89.882 761 33 14 5729 6468 709579209 709578472 0.000000e+00 939.0
8 TraesCS6A01G406200 chr6B 90.244 574 33 3 804 1359 709584054 709583486 0.000000e+00 728.0
9 TraesCS6A01G406200 chr6B 90.769 65 6 0 2143 2207 709582544 709582480 3.270000e-13 87.9
10 TraesCS6A01G406200 chr5D 95.803 834 31 4 1 833 353758555 353759385 0.000000e+00 1343.0
11 TraesCS6A01G406200 chr5D 75.774 549 109 13 879 1407 169974792 169975336 8.460000e-64 255.0
12 TraesCS6A01G406200 chr5D 93.333 45 3 0 5570 5614 496571864 496571908 4.250000e-07 67.6
13 TraesCS6A01G406200 chr5D 94.872 39 2 0 5576 5614 456087925 456087887 1.980000e-05 62.1
14 TraesCS6A01G406200 chr7A 96.875 800 25 0 1 800 315235738 315234939 0.000000e+00 1339.0
15 TraesCS6A01G406200 chr7A 96.750 800 26 0 1 800 490127391 490128190 0.000000e+00 1334.0
16 TraesCS6A01G406200 chr7A 96.750 800 25 1 1 800 108782800 108782002 0.000000e+00 1332.0
17 TraesCS6A01G406200 chr7A 96.746 799 25 1 1 798 450125151 450124353 0.000000e+00 1330.0
18 TraesCS6A01G406200 chr7A 96.625 800 27 0 1 800 652325751 652324952 0.000000e+00 1328.0
19 TraesCS6A01G406200 chr7A 96.500 800 28 0 1 800 141549881 141549082 0.000000e+00 1323.0
20 TraesCS6A01G406200 chr7A 96.500 800 28 0 1 800 142120801 142120002 0.000000e+00 1323.0
21 TraesCS6A01G406200 chr7A 96.500 800 28 0 1 800 490143461 490144260 0.000000e+00 1323.0
22 TraesCS6A01G406200 chr7A 88.517 627 50 10 800 1406 148921837 148921213 0.000000e+00 739.0
23 TraesCS6A01G406200 chr7A 87.013 154 16 4 2870 3019 63702105 63702258 3.150000e-38 171.0
24 TraesCS6A01G406200 chr3A 96.875 800 25 0 1 800 12385793 12386592 0.000000e+00 1339.0
25 TraesCS6A01G406200 chr3A 96.625 800 27 0 1 800 109295867 109296666 0.000000e+00 1328.0
26 TraesCS6A01G406200 chr3A 91.111 45 3 1 5571 5614 616472594 616472638 7.120000e-05 60.2
27 TraesCS6A01G406200 chr2A 96.758 802 25 1 1 801 606496029 606496830 0.000000e+00 1336.0
28 TraesCS6A01G406200 chr2A 96.750 800 26 0 1 800 8138540 8139339 0.000000e+00 1334.0
29 TraesCS6A01G406200 chr2B 93.637 833 48 5 1 831 696057265 696056436 0.000000e+00 1240.0
30 TraesCS6A01G406200 chr2B 93.116 828 51 5 1 825 162487484 162486660 0.000000e+00 1208.0
31 TraesCS6A01G406200 chr2B 93.284 804 49 5 1 801 644664912 644665713 0.000000e+00 1181.0
32 TraesCS6A01G406200 chr2B 92.494 826 56 5 1 822 135070486 135069663 0.000000e+00 1177.0
33 TraesCS6A01G406200 chr2B 92.140 827 60 5 1 824 569226871 569227695 0.000000e+00 1162.0
34 TraesCS6A01G406200 chr2B 86.506 830 94 12 7 822 712133898 712133073 0.000000e+00 896.0
35 TraesCS6A01G406200 chr2B 85.629 842 105 13 1 829 499922265 499923103 0.000000e+00 870.0
36 TraesCS6A01G406200 chr2B 81.210 628 94 12 800 1406 135779892 135780516 9.910000e-133 484.0
37 TraesCS6A01G406200 chr2B 89.286 140 14 1 2878 3016 86538409 86538270 2.440000e-39 174.0
38 TraesCS6A01G406200 chr5A 93.727 829 46 6 1 826 12966605 12965780 0.000000e+00 1238.0
39 TraesCS6A01G406200 chr5A 94.632 801 39 4 1 798 20181879 20181080 0.000000e+00 1238.0
40 TraesCS6A01G406200 chr5A 94.514 802 44 0 1 802 24540475 24541276 0.000000e+00 1238.0
41 TraesCS6A01G406200 chr5A 94.632 801 40 2 1 800 24851851 24852649 0.000000e+00 1238.0
42 TraesCS6A01G406200 chr5A 94.632 801 40 3 1 800 31262522 31263320 0.000000e+00 1238.0
43 TraesCS6A01G406200 chr5A 94.417 806 44 1 1 805 55041624 55040819 0.000000e+00 1238.0
44 TraesCS6A01G406200 chr5A 94.417 806 44 1 1 805 78275411 78276216 0.000000e+00 1238.0
45 TraesCS6A01G406200 chr5A 94.625 800 41 2 1 800 98420094 98420891 0.000000e+00 1238.0
46 TraesCS6A01G406200 chr5A 94.417 806 43 2 1 804 104666362 104665557 0.000000e+00 1238.0
47 TraesCS6A01G406200 chr5A 94.625 800 42 1 1 800 134557287 134558085 0.000000e+00 1238.0
48 TraesCS6A01G406200 chr5A 94.521 803 42 2 1 802 232884587 232885388 0.000000e+00 1238.0
49 TraesCS6A01G406200 chr5A 94.212 812 45 2 1 810 332476348 332475537 0.000000e+00 1238.0
50 TraesCS6A01G406200 chr5A 94.417 806 43 2 1 804 434024118 434023313 0.000000e+00 1238.0
51 TraesCS6A01G406200 chr5A 94.321 810 43 3 1 807 586912401 586913210 0.000000e+00 1238.0
52 TraesCS6A01G406200 chr5A 94.521 803 42 1 2 802 612322300 612323102 0.000000e+00 1238.0
53 TraesCS6A01G406200 chr5A 94.314 809 45 1 1 808 618934213 618935021 0.000000e+00 1238.0
54 TraesCS6A01G406200 chr5A 94.321 810 43 3 1 807 660406401 660405592 0.000000e+00 1238.0
55 TraesCS6A01G406200 chr5A 94.118 816 43 5 1 812 487439728 487438914 0.000000e+00 1236.0
56 TraesCS6A01G406200 chr5A 94.410 805 44 1 1 804 690470351 690471155 0.000000e+00 1236.0
57 TraesCS6A01G406200 chr5A 94.507 801 43 1 1 800 297970978 297971778 0.000000e+00 1234.0
58 TraesCS6A01G406200 chr5A 81.238 533 76 12 894 1406 688607800 688608328 6.140000e-110 409.0
59 TraesCS6A01G406200 chr5A 91.724 145 11 1 2879 3022 415386577 415386433 4.020000e-47 200.0
60 TraesCS6A01G406200 chr4D 82.137 627 89 11 800 1406 484148317 484148940 3.510000e-142 516.0
61 TraesCS6A01G406200 chr3B 90.728 302 26 1 800 1101 235888980 235888681 1.030000e-107 401.0
62 TraesCS6A01G406200 chr3B 91.045 134 10 2 1242 1374 235888198 235888066 5.240000e-41 180.0
63 TraesCS6A01G406200 chr3B 89.928 139 11 3 2878 3014 127906729 127906592 6.770000e-40 176.0
64 TraesCS6A01G406200 chr3B 92.632 95 7 0 1150 1244 235888451 235888357 3.200000e-28 137.0
65 TraesCS6A01G406200 chr3D 82.121 481 65 8 946 1406 571127430 571127909 6.180000e-105 392.0
66 TraesCS6A01G406200 chr4B 77.493 351 71 7 800 1147 187359908 187359563 3.110000e-48 204.0
67 TraesCS6A01G406200 chr7B 89.262 149 11 5 2878 3024 661170458 661170313 1.460000e-41 182.0
68 TraesCS6A01G406200 chr7B 88.966 145 13 3 2878 3020 297161322 297161179 6.770000e-40 176.0
69 TraesCS6A01G406200 chr7B 89.362 141 12 3 2878 3016 665423373 665423234 2.440000e-39 174.0
70 TraesCS6A01G406200 chr4A 89.286 140 13 2 2878 3016 227083509 227083371 2.440000e-39 174.0
71 TraesCS6A01G406200 chr2D 84.694 98 10 4 6473 6566 506511823 506511919 7.020000e-15 93.5
72 TraesCS6A01G406200 chr2D 83.871 62 10 0 1829 1890 71203642 71203703 7.120000e-05 60.2
73 TraesCS6A01G406200 chr1D 95.556 45 2 0 5685 5729 435271683 435271727 9.140000e-09 73.1
74 TraesCS6A01G406200 chr6D 80.435 92 16 2 1861 1951 34307594 34307504 1.180000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G406200 chr6A 611655393 611661966 6573 False 2965.650000 7354 96.666500 1 6574 4 chr6A.!!$F1 6573
1 TraesCS6A01G406200 chr6B 709578472 709584054 5582 True 1579.980000 4970 91.106800 804 6468 5 chr6B.!!$R1 5664
2 TraesCS6A01G406200 chr5D 353758555 353759385 830 False 1343.000000 1343 95.803000 1 833 1 chr5D.!!$F2 832
3 TraesCS6A01G406200 chr5D 169974792 169975336 544 False 255.000000 255 75.774000 879 1407 1 chr5D.!!$F1 528
4 TraesCS6A01G406200 chr7A 315234939 315235738 799 True 1339.000000 1339 96.875000 1 800 1 chr7A.!!$R5 799
5 TraesCS6A01G406200 chr7A 490127391 490128190 799 False 1334.000000 1334 96.750000 1 800 1 chr7A.!!$F2 799
6 TraesCS6A01G406200 chr7A 108782002 108782800 798 True 1332.000000 1332 96.750000 1 800 1 chr7A.!!$R1 799
7 TraesCS6A01G406200 chr7A 450124353 450125151 798 True 1330.000000 1330 96.746000 1 798 1 chr7A.!!$R6 797
8 TraesCS6A01G406200 chr7A 652324952 652325751 799 True 1328.000000 1328 96.625000 1 800 1 chr7A.!!$R7 799
9 TraesCS6A01G406200 chr7A 141549082 141549881 799 True 1323.000000 1323 96.500000 1 800 1 chr7A.!!$R2 799
10 TraesCS6A01G406200 chr7A 142120002 142120801 799 True 1323.000000 1323 96.500000 1 800 1 chr7A.!!$R3 799
11 TraesCS6A01G406200 chr7A 490143461 490144260 799 False 1323.000000 1323 96.500000 1 800 1 chr7A.!!$F3 799
12 TraesCS6A01G406200 chr7A 148921213 148921837 624 True 739.000000 739 88.517000 800 1406 1 chr7A.!!$R4 606
13 TraesCS6A01G406200 chr3A 12385793 12386592 799 False 1339.000000 1339 96.875000 1 800 1 chr3A.!!$F1 799
14 TraesCS6A01G406200 chr3A 109295867 109296666 799 False 1328.000000 1328 96.625000 1 800 1 chr3A.!!$F2 799
15 TraesCS6A01G406200 chr2A 606496029 606496830 801 False 1336.000000 1336 96.758000 1 801 1 chr2A.!!$F2 800
16 TraesCS6A01G406200 chr2A 8138540 8139339 799 False 1334.000000 1334 96.750000 1 800 1 chr2A.!!$F1 799
17 TraesCS6A01G406200 chr2B 696056436 696057265 829 True 1240.000000 1240 93.637000 1 831 1 chr2B.!!$R4 830
18 TraesCS6A01G406200 chr2B 162486660 162487484 824 True 1208.000000 1208 93.116000 1 825 1 chr2B.!!$R3 824
19 TraesCS6A01G406200 chr2B 644664912 644665713 801 False 1181.000000 1181 93.284000 1 801 1 chr2B.!!$F4 800
20 TraesCS6A01G406200 chr2B 135069663 135070486 823 True 1177.000000 1177 92.494000 1 822 1 chr2B.!!$R2 821
21 TraesCS6A01G406200 chr2B 569226871 569227695 824 False 1162.000000 1162 92.140000 1 824 1 chr2B.!!$F3 823
22 TraesCS6A01G406200 chr2B 712133073 712133898 825 True 896.000000 896 86.506000 7 822 1 chr2B.!!$R5 815
23 TraesCS6A01G406200 chr2B 499922265 499923103 838 False 870.000000 870 85.629000 1 829 1 chr2B.!!$F2 828
24 TraesCS6A01G406200 chr2B 135779892 135780516 624 False 484.000000 484 81.210000 800 1406 1 chr2B.!!$F1 606
25 TraesCS6A01G406200 chr5A 12965780 12966605 825 True 1238.000000 1238 93.727000 1 826 1 chr5A.!!$R1 825
26 TraesCS6A01G406200 chr5A 20181080 20181879 799 True 1238.000000 1238 94.632000 1 798 1 chr5A.!!$R2 797
27 TraesCS6A01G406200 chr5A 24540475 24541276 801 False 1238.000000 1238 94.514000 1 802 1 chr5A.!!$F1 801
28 TraesCS6A01G406200 chr5A 24851851 24852649 798 False 1238.000000 1238 94.632000 1 800 1 chr5A.!!$F2 799
29 TraesCS6A01G406200 chr5A 31262522 31263320 798 False 1238.000000 1238 94.632000 1 800 1 chr5A.!!$F3 799
30 TraesCS6A01G406200 chr5A 55040819 55041624 805 True 1238.000000 1238 94.417000 1 805 1 chr5A.!!$R3 804
31 TraesCS6A01G406200 chr5A 78275411 78276216 805 False 1238.000000 1238 94.417000 1 805 1 chr5A.!!$F4 804
32 TraesCS6A01G406200 chr5A 98420094 98420891 797 False 1238.000000 1238 94.625000 1 800 1 chr5A.!!$F5 799
33 TraesCS6A01G406200 chr5A 104665557 104666362 805 True 1238.000000 1238 94.417000 1 804 1 chr5A.!!$R4 803
34 TraesCS6A01G406200 chr5A 134557287 134558085 798 False 1238.000000 1238 94.625000 1 800 1 chr5A.!!$F6 799
35 TraesCS6A01G406200 chr5A 232884587 232885388 801 False 1238.000000 1238 94.521000 1 802 1 chr5A.!!$F7 801
36 TraesCS6A01G406200 chr5A 332475537 332476348 811 True 1238.000000 1238 94.212000 1 810 1 chr5A.!!$R5 809
37 TraesCS6A01G406200 chr5A 434023313 434024118 805 True 1238.000000 1238 94.417000 1 804 1 chr5A.!!$R7 803
38 TraesCS6A01G406200 chr5A 586912401 586913210 809 False 1238.000000 1238 94.321000 1 807 1 chr5A.!!$F9 806
39 TraesCS6A01G406200 chr5A 612322300 612323102 802 False 1238.000000 1238 94.521000 2 802 1 chr5A.!!$F10 800
40 TraesCS6A01G406200 chr5A 618934213 618935021 808 False 1238.000000 1238 94.314000 1 808 1 chr5A.!!$F11 807
41 TraesCS6A01G406200 chr5A 660405592 660406401 809 True 1238.000000 1238 94.321000 1 807 1 chr5A.!!$R9 806
42 TraesCS6A01G406200 chr5A 487438914 487439728 814 True 1236.000000 1236 94.118000 1 812 1 chr5A.!!$R8 811
43 TraesCS6A01G406200 chr5A 690470351 690471155 804 False 1236.000000 1236 94.410000 1 804 1 chr5A.!!$F13 803
44 TraesCS6A01G406200 chr5A 297970978 297971778 800 False 1234.000000 1234 94.507000 1 800 1 chr5A.!!$F8 799
45 TraesCS6A01G406200 chr5A 688607800 688608328 528 False 409.000000 409 81.238000 894 1406 1 chr5A.!!$F12 512
46 TraesCS6A01G406200 chr4D 484148317 484148940 623 False 516.000000 516 82.137000 800 1406 1 chr4D.!!$F1 606
47 TraesCS6A01G406200 chr3B 235888066 235888980 914 True 239.333333 401 91.468333 800 1374 3 chr3B.!!$R2 574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
193 199 0.034896 AGTTCAATCTCGTTGCCGGT 59.965 50.000 1.90 0.00 37.74 5.28 F
1420 1831 1.231963 AAAAAGTGACCCCTGGAGGT 58.768 50.000 6.57 6.57 45.12 3.85 F
1930 2342 0.041982 ACCCCGGGCCACATATTTTT 59.958 50.000 17.73 0.00 0.00 1.94 F
2275 2713 0.242017 AAAACTCATGCAGCGAAGGC 59.758 50.000 0.00 0.00 40.37 4.35 F
3456 3908 1.576421 CGCTCACCCTTGTGCTTTC 59.424 57.895 0.00 0.00 42.46 2.62 F
4886 5341 0.038983 TTTCGCCGTTCACTCGATGA 60.039 50.000 0.00 0.00 34.65 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1589 2001 0.036306 ACTAAAAGGACAGTGCCCGG 59.964 55.0 0.00 0.00 0.00 5.73 R
2876 3327 0.835276 GGGATTAACCGTACAGGGCT 59.165 55.0 8.31 0.00 46.96 5.19 R
3018 3469 0.965363 ACGGGTGGATTTGCACATCC 60.965 55.0 22.64 22.64 43.03 3.51 R
4057 4509 0.745845 GTACACCAGCAGAGCCATGG 60.746 60.0 7.63 7.63 40.10 3.66 R
5149 5605 0.325933 CTGGACTGCAGGAATCACCA 59.674 55.0 19.93 14.88 42.04 4.17 R
6406 6964 0.437678 GCGACGCATATCAGCTCATG 59.562 55.0 16.42 0.00 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
193 199 0.034896 AGTTCAATCTCGTTGCCGGT 59.965 50.000 1.90 0.00 37.74 5.28
198 204 2.073816 CAATCTCGTTGCCGGTAAGTT 58.926 47.619 4.75 0.00 33.95 2.66
466 475 5.698545 GGGAGTTGCATAATCTCATAGTCAC 59.301 44.000 0.00 0.00 0.00 3.67
869 901 5.086621 ACAAAATAGGAGGAATGCCAAAGT 58.913 37.500 0.00 0.00 36.29 2.66
875 907 4.677182 AGGAGGAATGCCAAAGTAACAAT 58.323 39.130 0.00 0.00 36.29 2.71
1046 1079 2.507102 AGTGTCGGATGCGCTTCG 60.507 61.111 16.13 13.10 0.00 3.79
1135 1331 3.210232 TGGAGACGGACTCTATACAGG 57.790 52.381 7.38 0.00 44.37 4.00
1161 1376 2.546195 ACGCAGTTATGTCGACTCTC 57.454 50.000 17.92 4.94 37.78 3.20
1166 1381 2.678836 CAGTTATGTCGACTCTCGGAGT 59.321 50.000 17.92 6.29 46.42 3.85
1191 1406 7.111247 TGTTTTCAAAGACATCAAGTTCCAT 57.889 32.000 0.00 0.00 0.00 3.41
1195 1410 6.713762 TCAAAGACATCAAGTTCCATTTGT 57.286 33.333 0.00 0.00 0.00 2.83
1291 1667 3.445096 ACATGGTGCTAAATTGGAAGCTC 59.555 43.478 0.00 5.60 39.53 4.09
1377 1788 7.781324 TCTGTCCAGCACTGATATATAATGA 57.219 36.000 0.00 0.00 0.00 2.57
1420 1831 1.231963 AAAAAGTGACCCCTGGAGGT 58.768 50.000 6.57 6.57 45.12 3.85
1426 1837 2.038490 ACCCCTGGAGGTCCGTAC 59.962 66.667 0.00 0.00 33.81 3.67
1470 1882 4.828939 TGTTCTCAAATGGCTCAAATCACT 59.171 37.500 0.00 0.00 0.00 3.41
1493 1905 1.517257 CTCGCTCGTCATGTGTCCC 60.517 63.158 0.00 0.00 0.00 4.46
1495 1907 2.509336 GCTCGTCATGTGTCCCCG 60.509 66.667 0.00 0.00 0.00 5.73
1556 1968 3.480133 GTGCCTAGGCCGACCCAT 61.480 66.667 30.81 0.00 41.09 4.00
1611 2023 1.351350 GGGCACTGTCCTTTTAGTCCT 59.649 52.381 0.00 0.00 0.00 3.85
1617 2029 3.071167 ACTGTCCTTTTAGTCCTGTGTCC 59.929 47.826 0.00 0.00 0.00 4.02
1622 2034 1.122632 TTTAGTCCTGTGTCCGGCCA 61.123 55.000 2.24 0.00 0.00 5.36
1650 2062 4.215742 TCCATTAGCCGGTCCGCG 62.216 66.667 5.50 0.00 0.00 6.46
1667 2079 2.086510 CGTAGCACGACCCAATTGG 58.913 57.895 18.21 18.21 46.05 3.16
1743 2155 3.194005 AGACACACACCGATTCAAAGT 57.806 42.857 0.00 0.00 0.00 2.66
1745 2157 3.945285 AGACACACACCGATTCAAAGTTT 59.055 39.130 0.00 0.00 0.00 2.66
1752 2164 3.245048 CACCGATTCAAAGTTTGCCAAAC 59.755 43.478 12.37 12.37 41.69 2.93
1783 2195 2.990967 CTGGCCCACCGCAATTGT 60.991 61.111 7.40 0.00 40.31 2.71
1806 2218 2.793946 GCACGGCATGGCTTACAG 59.206 61.111 18.09 3.54 0.00 2.74
1809 2221 2.272146 CGGCATGGCTTACAGGGT 59.728 61.111 18.09 0.00 0.00 4.34
1820 2232 3.560068 GGCTTACAGGGTCACGATTATTG 59.440 47.826 0.00 0.00 0.00 1.90
1826 2238 1.137479 GGGTCACGATTATTGGACGGA 59.863 52.381 0.00 0.00 0.00 4.69
1859 2271 3.357079 CTGCGTGCAACACTCCCC 61.357 66.667 0.00 0.00 35.74 4.81
1866 2278 4.722700 CAACACTCCCCGGCCCAG 62.723 72.222 0.00 0.00 0.00 4.45
1890 2302 3.191371 CACGACCTAGTTAGTAAACGGGT 59.809 47.826 0.00 8.07 43.85 5.28
1894 2306 5.330455 ACCTAGTTAGTAAACGGGTTAGC 57.670 43.478 0.00 0.00 40.85 3.09
1916 2328 3.428282 GGCACGTTTAGCACCCCG 61.428 66.667 0.00 0.00 0.00 5.73
1919 2331 4.710167 ACGTTTAGCACCCCGGGC 62.710 66.667 17.73 3.39 0.00 6.13
1921 2333 4.354162 GTTTAGCACCCCGGGCCA 62.354 66.667 17.73 0.00 0.00 5.36
1930 2342 0.041982 ACCCCGGGCCACATATTTTT 59.958 50.000 17.73 0.00 0.00 1.94
2031 2453 2.444895 GATCCACGGGCTCCCTCT 60.445 66.667 3.11 0.00 0.00 3.69
2045 2467 1.553690 CCCTCTGCTCCCCGAAAGAA 61.554 60.000 0.00 0.00 0.00 2.52
2047 2469 1.677217 CCTCTGCTCCCCGAAAGAAAG 60.677 57.143 0.00 0.00 0.00 2.62
2093 2517 0.891904 GTTCGCTACCTTTTGCCCCA 60.892 55.000 0.00 0.00 0.00 4.96
2145 2569 3.330267 CAAAACCCTCTCCTCTTTCTCG 58.670 50.000 0.00 0.00 0.00 4.04
2181 2605 3.612681 TAGGGCGGCGGATACAGC 61.613 66.667 9.78 0.00 35.76 4.40
2240 2678 2.444624 CGGCCAAGATCACGACGTG 61.445 63.158 21.88 21.88 34.45 4.49
2263 2701 1.771073 CGACAGCGGCACAAAACTCA 61.771 55.000 1.45 0.00 0.00 3.41
2264 2702 0.593128 GACAGCGGCACAAAACTCAT 59.407 50.000 1.45 0.00 0.00 2.90
2275 2713 0.242017 AAAACTCATGCAGCGAAGGC 59.758 50.000 0.00 0.00 40.37 4.35
2641 3088 4.783734 GGTGTCGACGTACCGCCC 62.784 72.222 11.62 0.00 0.00 6.13
2781 3228 9.713713 GGAGGCAGGTTTATTTAATTTGTTTTA 57.286 29.630 0.00 0.00 0.00 1.52
2783 3230 9.198837 AGGCAGGTTTATTTAATTTGTTTTACG 57.801 29.630 0.00 0.00 0.00 3.18
2784 3231 8.980610 GGCAGGTTTATTTAATTTGTTTTACGT 58.019 29.630 0.00 0.00 0.00 3.57
2876 3327 5.410067 GCGAGGAATCAAATCAATTTCCAA 58.590 37.500 3.62 0.00 40.09 3.53
2884 3335 5.083122 TCAAATCAATTTCCAAGCCCTGTA 58.917 37.500 0.00 0.00 0.00 2.74
2885 3336 5.047377 TCAAATCAATTTCCAAGCCCTGTAC 60.047 40.000 0.00 0.00 0.00 2.90
3018 3469 1.834188 AACCGAACAAGCCCTAATGG 58.166 50.000 0.00 0.00 37.09 3.16
3056 3507 7.155328 CACCCGTATCTTTTAAGCAGAGATAT 58.845 38.462 0.00 0.00 35.52 1.63
3170 3621 6.154706 ACTTCAGGTTCGTATCTTTCTACCAT 59.845 38.462 0.00 0.00 0.00 3.55
3193 3644 3.716006 CGCAGTTCTGTGCACGGG 61.716 66.667 25.15 14.03 44.21 5.28
3245 3696 9.396022 CTTGTACATTATGGTTGAGACCTTATT 57.604 33.333 0.00 0.00 46.66 1.40
3281 3732 5.693814 CAGCTTAAACTGTGACTGGATTTC 58.306 41.667 0.00 0.00 32.78 2.17
3328 3780 4.885325 TGCATGCAGATGAACACTATGAAT 59.115 37.500 18.46 0.00 0.00 2.57
3405 3857 6.311935 ACAAAACATGCATACATCTCAATTGC 59.688 34.615 0.00 0.00 32.87 3.56
3456 3908 1.576421 CGCTCACCCTTGTGCTTTC 59.424 57.895 0.00 0.00 42.46 2.62
3494 3946 9.471084 TCTTTTAGTTAAGGTGCAAATAAAAGC 57.529 29.630 17.14 0.00 44.80 3.51
3496 3948 9.601217 TTTTAGTTAAGGTGCAAATAAAAGCAA 57.399 25.926 0.00 0.00 43.20 3.91
3497 3949 9.771534 TTTAGTTAAGGTGCAAATAAAAGCAAT 57.228 25.926 0.00 0.00 43.20 3.56
3498 3950 9.771534 TTAGTTAAGGTGCAAATAAAAGCAATT 57.228 25.926 0.00 0.00 43.20 2.32
3536 3988 7.811482 AGATCTCAATTATTATCCTCCTGCT 57.189 36.000 0.00 0.00 0.00 4.24
3549 4001 4.272489 TCCTCCTGCTTATGGTTTTGATG 58.728 43.478 0.00 0.00 0.00 3.07
3582 4034 6.127647 TGCTCACCCTTATGCTTTTCTTTATG 60.128 38.462 0.00 0.00 0.00 1.90
3591 4043 5.886960 TGCTTTTCTTTATGGAGCTCTTC 57.113 39.130 14.64 0.00 34.56 2.87
3677 4129 4.922206 TGGCTTTGATAATCTGTGTCCTT 58.078 39.130 0.00 0.00 0.00 3.36
3678 4130 4.701651 TGGCTTTGATAATCTGTGTCCTTG 59.298 41.667 0.00 0.00 0.00 3.61
3687 4139 1.985159 TCTGTGTCCTTGCCCTTATGT 59.015 47.619 0.00 0.00 0.00 2.29
3696 4148 5.696270 GTCCTTGCCCTTATGTTTTTCTTTG 59.304 40.000 0.00 0.00 0.00 2.77
3705 4157 7.201911 CCCTTATGTTTTTCTTTGTTGGACTCT 60.202 37.037 0.00 0.00 0.00 3.24
3755 4207 8.841444 AACAGATATGTGAATTGCGTAATTTC 57.159 30.769 12.86 9.78 36.66 2.17
3810 4262 8.447833 CGGAACTTAAATACTTGCAGATGTAAA 58.552 33.333 0.00 0.00 0.00 2.01
3822 4274 9.938280 ACTTGCAGATGTAAAGTTGTTATAGTA 57.062 29.630 0.00 0.00 29.98 1.82
3891 4343 4.630894 TCACATGTTGTTCAGTGTTTCC 57.369 40.909 0.00 0.00 33.84 3.13
3922 4374 5.661458 AGCTGTAACATTCTACTGCGTATT 58.339 37.500 0.00 0.00 45.95 1.89
3957 4409 6.523676 TTGTTTTGATTCGGCTTTCAATTC 57.476 33.333 0.00 0.00 32.27 2.17
4015 4467 3.077556 GAGAGGCGGAGGGCAAGA 61.078 66.667 0.00 0.00 46.16 3.02
4042 4494 4.322349 GCGCTCTATGGTCAATAGAAGGAT 60.322 45.833 0.00 0.00 45.34 3.24
4057 4509 2.813908 GATGACCCGTCACCGTGC 60.814 66.667 0.00 0.00 43.11 5.34
4117 4569 0.332972 GCTCCCAATCCCTTCAACCT 59.667 55.000 0.00 0.00 0.00 3.50
4163 4615 9.254133 ACTGATCATGTAGATATTTTCTGAACG 57.746 33.333 0.00 0.00 37.00 3.95
4239 4692 1.001624 TTGAAGCTGATCGACGCATG 58.998 50.000 6.05 0.00 0.00 4.06
4245 4698 0.723414 CTGATCGACGCATGCACTTT 59.277 50.000 19.57 0.00 0.00 2.66
4295 4748 7.669427 TGCATGTTCTCTATTCAATGGTTTTT 58.331 30.769 0.00 0.00 0.00 1.94
4383 4836 1.726791 GCATCTGTCACACTGTAACCG 59.273 52.381 0.00 0.00 0.00 4.44
4408 4861 7.492524 GGAAATGAATGGGGAGTAGATTTTTC 58.507 38.462 0.00 0.00 0.00 2.29
4418 4871 4.691216 GGAGTAGATTTTTCGTGCTTGAGT 59.309 41.667 0.00 0.00 0.00 3.41
4438 4891 3.257375 AGTTCAGTTACACGCACTATCCA 59.743 43.478 0.00 0.00 0.00 3.41
4439 4892 3.226346 TCAGTTACACGCACTATCCAC 57.774 47.619 0.00 0.00 0.00 4.02
4440 4893 2.559231 TCAGTTACACGCACTATCCACA 59.441 45.455 0.00 0.00 0.00 4.17
4467 4920 5.635700 GTCCACTTTACTTGAGATCTGTGTC 59.364 44.000 0.00 0.00 0.00 3.67
4471 4924 4.848562 TTACTTGAGATCTGTGTCGTGT 57.151 40.909 0.00 0.00 0.00 4.49
4484 4937 2.978489 GTGTCGTGTGTAGAGTGTTAGC 59.022 50.000 0.00 0.00 0.00 3.09
4500 4953 3.055094 TGTTAGCAGAGTTCAGGGGAATC 60.055 47.826 0.00 0.00 35.05 2.52
4511 4964 6.794534 AGTTCAGGGGAATCTCTGTTTTTAT 58.205 36.000 0.00 0.00 35.05 1.40
4550 5003 1.270147 ACAACAGTGCCTCTAACGGTC 60.270 52.381 0.00 0.00 0.00 4.79
4568 5021 3.124636 CGGTCCTCCTTTTTATGTTCACG 59.875 47.826 0.00 0.00 0.00 4.35
4577 5030 3.657015 TTTATGTTCACGTGTACCCGA 57.343 42.857 20.69 4.73 0.00 5.14
4600 5055 1.342496 TGTGAGTGAGAGGCTGTGAAG 59.658 52.381 0.00 0.00 0.00 3.02
4616 5071 1.353091 GAAGGGGAGAGTGAACCAGT 58.647 55.000 0.00 0.00 0.00 4.00
4621 5076 0.610687 GGAGAGTGAACCAGTGAGGG 59.389 60.000 0.00 0.00 43.89 4.30
4631 5086 1.429687 ACCAGTGAGGGTGTCTACTCT 59.570 52.381 0.00 0.00 41.42 3.24
4635 5090 2.309162 AGTGAGGGTGTCTACTCTGCTA 59.691 50.000 0.00 0.00 37.89 3.49
4743 5198 8.095792 ACTTTATGAATCAACATTTGGCATTCA 58.904 29.630 0.00 0.00 37.89 2.57
4817 5272 0.689745 ATAGACCCTTACCAGCCGCA 60.690 55.000 0.00 0.00 0.00 5.69
4886 5341 0.038983 TTTCGCCGTTCACTCGATGA 60.039 50.000 0.00 0.00 34.65 2.92
4898 5353 1.271871 ACTCGATGACAATTGGGGCAA 60.272 47.619 10.83 0.00 0.00 4.52
4926 5381 8.977412 TGGTATAGATTCAGTGATCAACAAGTA 58.023 33.333 0.00 0.00 0.00 2.24
4979 5434 4.866508 TCACTTCCAACTATTCTCGTGT 57.133 40.909 0.00 0.00 0.00 4.49
4984 5439 4.188247 TCCAACTATTCTCGTGTTCCTG 57.812 45.455 0.00 0.00 0.00 3.86
5010 5465 7.094118 GGCAGGTATGGTTAATCAGTAAAACAA 60.094 37.037 0.00 0.00 0.00 2.83
5011 5466 8.466798 GCAGGTATGGTTAATCAGTAAAACAAT 58.533 33.333 0.00 0.00 0.00 2.71
5149 5605 1.352352 CCATGAGGACAGGTTGAGGTT 59.648 52.381 0.00 0.00 36.89 3.50
5150 5606 2.430465 CATGAGGACAGGTTGAGGTTG 58.570 52.381 0.00 0.00 0.00 3.77
5151 5607 0.764890 TGAGGACAGGTTGAGGTTGG 59.235 55.000 0.00 0.00 0.00 3.77
5194 5650 1.625315 TCTGCACATTGCTACAGTCCT 59.375 47.619 0.00 0.00 45.31 3.85
5228 5684 1.696063 ATGCTGCAGTGGTTTTCTGT 58.304 45.000 16.64 0.00 35.60 3.41
5319 5775 2.615465 TTGCCTGGGGAGATGTGGG 61.615 63.158 0.00 0.00 0.00 4.61
5349 5805 1.167851 CTCGTGGCATGTGGATTGTT 58.832 50.000 6.60 0.00 0.00 2.83
5350 5806 0.880441 TCGTGGCATGTGGATTGTTG 59.120 50.000 6.60 0.00 0.00 3.33
5364 5820 4.457603 TGGATTGTTGGTTTATCCTTGACG 59.542 41.667 0.00 0.00 38.88 4.35
5375 5831 2.636412 CCTTGACGTGAGGAGGCGA 61.636 63.158 8.55 0.00 36.33 5.54
5413 5869 3.517296 TCACTGGGAAAGCCATGTTAA 57.483 42.857 0.00 0.00 35.15 2.01
5419 5875 3.245586 TGGGAAAGCCATGTTAATGAGGT 60.246 43.478 0.00 0.00 35.67 3.85
5423 5879 5.391312 AAAGCCATGTTAATGAGGTTGAC 57.609 39.130 0.00 0.00 35.67 3.18
5483 5939 6.257411 GTGTCATCATCTACATTCCAGAGTTG 59.743 42.308 0.00 0.00 0.00 3.16
5505 5961 0.172578 CACTTCTGATACACGGCGGA 59.827 55.000 13.24 0.00 0.00 5.54
5529 5985 1.227089 CGACGGCAGGAGAATGAGG 60.227 63.158 0.00 0.00 0.00 3.86
5560 6016 1.032114 CAGGATCCAGGTTTTCCCGC 61.032 60.000 15.82 0.00 41.86 6.13
5582 6038 1.939255 GCAGATGCTTAGAGCCTGTTC 59.061 52.381 0.00 0.00 41.51 3.18
5584 6040 1.137872 AGATGCTTAGAGCCTGTTCGG 59.862 52.381 0.00 0.00 41.51 4.30
5618 6074 2.110627 GAGCGGCCAGAGCATCAT 59.889 61.111 2.24 0.00 42.56 2.45
5620 6076 3.344215 GCGGCCAGAGCATCATCG 61.344 66.667 2.24 0.00 42.56 3.84
5626 6082 1.739466 GCCAGAGCATCATCGAACAAA 59.261 47.619 0.00 0.00 37.82 2.83
5655 6111 2.647158 GCTTTCCTCGTCCCGGAGT 61.647 63.158 0.73 0.00 31.98 3.85
5685 6141 1.997928 GCAGGCCATTTTCTCGGAGC 61.998 60.000 5.01 0.00 0.00 4.70
5740 6277 6.491714 AACAGGCTCTTAGTGTCATATCAT 57.508 37.500 0.00 0.00 0.00 2.45
5773 6310 1.698532 CCTTGAGGGCTATGCTGATCT 59.301 52.381 0.00 0.00 0.00 2.75
5777 6314 3.581101 TGAGGGCTATGCTGATCTTAGT 58.419 45.455 0.00 0.00 0.00 2.24
5779 6316 3.312890 AGGGCTATGCTGATCTTAGTGT 58.687 45.455 0.00 0.00 0.00 3.55
5802 6339 4.696479 AGCACTGCTGCCTATAAGTAAT 57.304 40.909 1.67 0.00 45.53 1.89
5884 6421 2.612972 CGTGACATCTTTGTGCTAGGGT 60.613 50.000 0.00 0.00 35.79 4.34
5885 6422 3.003480 GTGACATCTTTGTGCTAGGGTC 58.997 50.000 0.00 0.00 35.79 4.46
5896 6433 4.769688 TGTGCTAGGGTCATTATGTCTTG 58.230 43.478 0.00 0.00 0.00 3.02
5899 6436 4.130118 GCTAGGGTCATTATGTCTTGTGG 58.870 47.826 0.00 0.00 0.00 4.17
5941 6478 1.550072 TGCGTCTGGTCTTGATGATGA 59.450 47.619 0.00 0.00 0.00 2.92
5958 6505 5.828299 TGATGAAACGTTTGGGATATTCC 57.172 39.130 20.10 0.70 35.23 3.01
5983 6530 4.210120 CGCTTAATCCACTTGCAGTATCTC 59.790 45.833 0.00 0.00 0.00 2.75
5988 6535 9.632807 CTTAATCCACTTGCAGTATCTCTATAC 57.367 37.037 0.00 0.00 38.64 1.47
6005 6552 9.868277 ATCTCTATACATCTGTAAATAAGCTGC 57.132 33.333 0.00 0.00 33.76 5.25
6015 6565 5.252547 TGTAAATAAGCTGCAGATGTCCAA 58.747 37.500 20.43 0.00 0.00 3.53
6028 6579 5.451242 GCAGATGTCCAAACAAACACCTTAA 60.451 40.000 0.00 0.00 39.30 1.85
6035 6586 7.093727 TGTCCAAACAAACACCTTAATGAGAAA 60.094 33.333 0.00 0.00 30.70 2.52
6042 6593 5.438761 ACACCTTAATGAGAAACTTGCAC 57.561 39.130 0.00 0.00 0.00 4.57
6043 6594 5.133221 ACACCTTAATGAGAAACTTGCACT 58.867 37.500 0.00 0.00 0.00 4.40
6157 6710 3.865745 ACCGAACGAGAAATATTGCTGAG 59.134 43.478 0.00 0.00 0.00 3.35
6162 6715 4.507710 ACGAGAAATATTGCTGAGCTTCA 58.492 39.130 5.83 0.00 0.00 3.02
6190 6743 2.030185 ACTATAGTTGATACCCTGCGCG 60.030 50.000 0.00 0.00 0.00 6.86
6213 6766 1.531423 CTGTGGTGAATTCTGCTGCT 58.469 50.000 7.05 0.00 0.00 4.24
6214 6767 1.884579 CTGTGGTGAATTCTGCTGCTT 59.115 47.619 7.05 0.00 0.00 3.91
6215 6768 3.076621 CTGTGGTGAATTCTGCTGCTTA 58.923 45.455 7.05 0.00 0.00 3.09
6216 6769 3.689347 TGTGGTGAATTCTGCTGCTTAT 58.311 40.909 7.05 0.00 0.00 1.73
6217 6770 4.842574 TGTGGTGAATTCTGCTGCTTATA 58.157 39.130 7.05 0.00 0.00 0.98
6218 6771 5.439721 TGTGGTGAATTCTGCTGCTTATAT 58.560 37.500 7.05 0.00 0.00 0.86
6219 6772 6.591001 TGTGGTGAATTCTGCTGCTTATATA 58.409 36.000 7.05 0.00 0.00 0.86
6220 6773 6.707608 TGTGGTGAATTCTGCTGCTTATATAG 59.292 38.462 7.05 0.00 0.00 1.31
6286 6840 2.270352 ACGTGGATGCAAAAGGAGAA 57.730 45.000 0.00 0.00 0.00 2.87
6345 6899 4.782156 TGTTCATATTGTCACGCTTGTTG 58.218 39.130 0.00 0.00 0.00 3.33
6356 6910 0.318107 CGCTTGTTGGGTCAAAGCTG 60.318 55.000 5.23 0.00 0.00 4.24
6358 6912 1.408702 GCTTGTTGGGTCAAAGCTGAA 59.591 47.619 0.00 0.00 31.88 3.02
6366 6920 3.766591 TGGGTCAAAGCTGAAGAAAAACA 59.233 39.130 0.00 0.00 31.88 2.83
6397 6955 2.180017 GGCGATGGCTTGCTTGTG 59.820 61.111 0.00 0.00 39.81 3.33
6399 6957 1.443194 GCGATGGCTTGCTTGTGTG 60.443 57.895 0.00 0.00 35.83 3.82
6400 6958 1.855213 GCGATGGCTTGCTTGTGTGA 61.855 55.000 0.00 0.00 35.83 3.58
6401 6959 0.592637 CGATGGCTTGCTTGTGTGAA 59.407 50.000 0.00 0.00 0.00 3.18
6402 6960 1.001487 CGATGGCTTGCTTGTGTGAAA 60.001 47.619 0.00 0.00 0.00 2.69
6403 6961 2.397549 GATGGCTTGCTTGTGTGAAAC 58.602 47.619 0.00 0.00 37.35 2.78
6404 6962 0.459489 TGGCTTGCTTGTGTGAAACC 59.541 50.000 0.00 0.00 34.36 3.27
6405 6963 0.459489 GGCTTGCTTGTGTGAAACCA 59.541 50.000 0.00 0.00 34.36 3.67
6406 6964 1.559831 GCTTGCTTGTGTGAAACCAC 58.440 50.000 0.00 0.00 34.36 4.16
6476 7034 8.754991 TTTTCTAACAAAGAGGTTTACATCCA 57.245 30.769 0.00 0.00 35.05 3.41
6477 7035 8.934023 TTTCTAACAAAGAGGTTTACATCCAT 57.066 30.769 0.00 0.00 35.05 3.41
6478 7036 7.921786 TCTAACAAAGAGGTTTACATCCATG 57.078 36.000 0.00 0.00 32.29 3.66
6479 7037 7.685481 TCTAACAAAGAGGTTTACATCCATGA 58.315 34.615 0.00 0.00 32.29 3.07
6480 7038 8.328758 TCTAACAAAGAGGTTTACATCCATGAT 58.671 33.333 0.00 0.00 32.29 2.45
6481 7039 7.781324 AACAAAGAGGTTTACATCCATGATT 57.219 32.000 0.00 0.00 0.00 2.57
6482 7040 7.781324 ACAAAGAGGTTTACATCCATGATTT 57.219 32.000 0.00 0.00 0.00 2.17
6483 7041 8.193953 ACAAAGAGGTTTACATCCATGATTTT 57.806 30.769 0.00 0.00 0.00 1.82
6484 7042 9.308000 ACAAAGAGGTTTACATCCATGATTTTA 57.692 29.630 0.00 0.00 0.00 1.52
6485 7043 9.573133 CAAAGAGGTTTACATCCATGATTTTAC 57.427 33.333 0.00 0.00 0.00 2.01
6486 7044 8.877864 AAGAGGTTTACATCCATGATTTTACA 57.122 30.769 0.00 0.00 0.00 2.41
6487 7045 8.877864 AGAGGTTTACATCCATGATTTTACAA 57.122 30.769 0.00 0.00 0.00 2.41
6488 7046 9.479549 AGAGGTTTACATCCATGATTTTACAAT 57.520 29.630 0.00 0.00 0.00 2.71
6489 7047 9.520204 GAGGTTTACATCCATGATTTTACAATG 57.480 33.333 0.00 0.00 0.00 2.82
6490 7048 8.477256 AGGTTTACATCCATGATTTTACAATGG 58.523 33.333 0.00 0.00 0.00 3.16
6491 7049 7.224557 GGTTTACATCCATGATTTTACAATGGC 59.775 37.037 0.00 0.00 32.68 4.40
6492 7050 7.658525 TTACATCCATGATTTTACAATGGCT 57.341 32.000 0.00 0.00 32.68 4.75
6493 7051 5.909477 ACATCCATGATTTTACAATGGCTG 58.091 37.500 0.00 3.81 35.39 4.85
6494 7052 5.657745 ACATCCATGATTTTACAATGGCTGA 59.342 36.000 10.74 0.00 33.96 4.26
6495 7053 6.325545 ACATCCATGATTTTACAATGGCTGAT 59.674 34.615 10.74 0.00 33.96 2.90
6496 7054 6.151663 TCCATGATTTTACAATGGCTGATG 57.848 37.500 0.00 0.00 32.68 3.07
6497 7055 5.657745 TCCATGATTTTACAATGGCTGATGT 59.342 36.000 0.00 0.00 32.68 3.06
6498 7056 6.154877 TCCATGATTTTACAATGGCTGATGTT 59.845 34.615 0.00 0.00 32.68 2.71
6499 7057 6.819649 CCATGATTTTACAATGGCTGATGTTT 59.180 34.615 0.00 0.00 0.00 2.83
6500 7058 7.980662 CCATGATTTTACAATGGCTGATGTTTA 59.019 33.333 0.00 0.00 0.00 2.01
6501 7059 9.027129 CATGATTTTACAATGGCTGATGTTTAG 57.973 33.333 0.00 0.00 0.00 1.85
6502 7060 8.347004 TGATTTTACAATGGCTGATGTTTAGA 57.653 30.769 0.00 0.00 0.00 2.10
6503 7061 8.970020 TGATTTTACAATGGCTGATGTTTAGAT 58.030 29.630 0.00 0.00 0.00 1.98
6504 7062 9.807649 GATTTTACAATGGCTGATGTTTAGATT 57.192 29.630 0.00 0.00 0.00 2.40
6505 7063 8.984891 TTTTACAATGGCTGATGTTTAGATTG 57.015 30.769 0.00 0.00 0.00 2.67
6506 7064 5.002464 ACAATGGCTGATGTTTAGATTGC 57.998 39.130 0.00 0.00 0.00 3.56
6507 7065 4.142093 ACAATGGCTGATGTTTAGATTGCC 60.142 41.667 0.00 0.00 39.33 4.52
6508 7066 3.370840 TGGCTGATGTTTAGATTGCCT 57.629 42.857 0.00 0.00 39.57 4.75
6509 7067 4.502105 TGGCTGATGTTTAGATTGCCTA 57.498 40.909 0.00 0.00 39.57 3.93
6510 7068 4.454678 TGGCTGATGTTTAGATTGCCTAG 58.545 43.478 0.00 0.00 39.57 3.02
6511 7069 3.251972 GGCTGATGTTTAGATTGCCTAGC 59.748 47.826 0.00 0.00 36.32 3.42
6512 7070 4.133078 GCTGATGTTTAGATTGCCTAGCT 58.867 43.478 0.00 0.00 0.00 3.32
6513 7071 4.578105 GCTGATGTTTAGATTGCCTAGCTT 59.422 41.667 0.00 0.00 0.00 3.74
6514 7072 5.277731 GCTGATGTTTAGATTGCCTAGCTTC 60.278 44.000 0.00 0.00 0.00 3.86
6515 7073 5.744171 TGATGTTTAGATTGCCTAGCTTCA 58.256 37.500 0.00 0.00 0.00 3.02
6516 7074 6.179756 TGATGTTTAGATTGCCTAGCTTCAA 58.820 36.000 0.00 0.00 0.00 2.69
6517 7075 6.658816 TGATGTTTAGATTGCCTAGCTTCAAA 59.341 34.615 0.00 0.00 0.00 2.69
6518 7076 6.254281 TGTTTAGATTGCCTAGCTTCAAAC 57.746 37.500 0.00 0.00 0.00 2.93
6519 7077 5.106712 TGTTTAGATTGCCTAGCTTCAAACG 60.107 40.000 0.00 0.00 0.00 3.60
6520 7078 1.740025 AGATTGCCTAGCTTCAAACGC 59.260 47.619 0.00 0.00 0.00 4.84
6521 7079 1.468520 GATTGCCTAGCTTCAAACGCA 59.531 47.619 0.00 0.00 0.00 5.24
6522 7080 1.533625 TTGCCTAGCTTCAAACGCAT 58.466 45.000 0.00 0.00 0.00 4.73
6523 7081 2.394930 TGCCTAGCTTCAAACGCATA 57.605 45.000 0.00 0.00 0.00 3.14
6524 7082 2.279741 TGCCTAGCTTCAAACGCATAG 58.720 47.619 0.00 0.00 0.00 2.23
6525 7083 1.599542 GCCTAGCTTCAAACGCATAGG 59.400 52.381 0.00 0.00 34.37 2.57
6526 7084 2.741878 GCCTAGCTTCAAACGCATAGGA 60.742 50.000 0.00 0.00 33.72 2.94
6527 7085 2.866762 CCTAGCTTCAAACGCATAGGAC 59.133 50.000 0.00 0.00 33.72 3.85
6528 7086 2.472695 AGCTTCAAACGCATAGGACA 57.527 45.000 0.00 0.00 0.00 4.02
6529 7087 2.778299 AGCTTCAAACGCATAGGACAA 58.222 42.857 0.00 0.00 0.00 3.18
6530 7088 2.744202 AGCTTCAAACGCATAGGACAAG 59.256 45.455 0.00 0.00 0.00 3.16
6531 7089 2.484264 GCTTCAAACGCATAGGACAAGT 59.516 45.455 0.00 0.00 0.00 3.16
6532 7090 3.058224 GCTTCAAACGCATAGGACAAGTT 60.058 43.478 0.00 0.00 0.00 2.66
6533 7091 4.153475 GCTTCAAACGCATAGGACAAGTTA 59.847 41.667 0.00 0.00 0.00 2.24
6534 7092 5.163754 GCTTCAAACGCATAGGACAAGTTAT 60.164 40.000 0.00 0.00 0.00 1.89
6535 7093 6.417191 TTCAAACGCATAGGACAAGTTATC 57.583 37.500 0.00 0.00 0.00 1.75
6536 7094 5.483811 TCAAACGCATAGGACAAGTTATCA 58.516 37.500 0.00 0.00 0.00 2.15
6537 7095 5.935206 TCAAACGCATAGGACAAGTTATCAA 59.065 36.000 0.00 0.00 0.00 2.57
6538 7096 5.796350 AACGCATAGGACAAGTTATCAAC 57.204 39.130 0.00 0.00 0.00 3.18
6539 7097 5.086104 ACGCATAGGACAAGTTATCAACT 57.914 39.130 0.00 0.00 45.46 3.16
6540 7098 6.216801 ACGCATAGGACAAGTTATCAACTA 57.783 37.500 0.00 0.00 41.91 2.24
6541 7099 6.636705 ACGCATAGGACAAGTTATCAACTAA 58.363 36.000 0.00 0.00 41.91 2.24
6542 7100 7.101054 ACGCATAGGACAAGTTATCAACTAAA 58.899 34.615 0.00 0.00 41.91 1.85
6543 7101 7.769044 ACGCATAGGACAAGTTATCAACTAAAT 59.231 33.333 0.00 0.00 41.91 1.40
6544 7102 8.064222 CGCATAGGACAAGTTATCAACTAAATG 58.936 37.037 0.00 0.00 41.91 2.32
6545 7103 9.109393 GCATAGGACAAGTTATCAACTAAATGA 57.891 33.333 0.00 0.00 41.91 2.57
6547 7105 7.617041 AGGACAAGTTATCAACTAAATGAGC 57.383 36.000 0.00 0.00 41.91 4.26
6548 7106 6.599638 AGGACAAGTTATCAACTAAATGAGCC 59.400 38.462 0.00 0.00 41.91 4.70
6549 7107 6.599638 GGACAAGTTATCAACTAAATGAGCCT 59.400 38.462 0.00 0.00 41.91 4.58
6550 7108 7.121315 GGACAAGTTATCAACTAAATGAGCCTT 59.879 37.037 0.00 0.00 41.91 4.35
6551 7109 7.820648 ACAAGTTATCAACTAAATGAGCCTTG 58.179 34.615 0.00 0.00 41.91 3.61
6552 7110 6.442513 AGTTATCAACTAAATGAGCCTTGC 57.557 37.500 0.00 0.00 40.69 4.01
6553 7111 6.183347 AGTTATCAACTAAATGAGCCTTGCT 58.817 36.000 0.00 0.00 40.32 3.91
6554 7112 7.338710 AGTTATCAACTAAATGAGCCTTGCTA 58.661 34.615 0.00 0.00 38.52 3.49
6555 7113 7.995488 AGTTATCAACTAAATGAGCCTTGCTAT 59.005 33.333 0.00 0.00 38.52 2.97
6556 7114 8.624776 GTTATCAACTAAATGAGCCTTGCTATT 58.375 33.333 0.00 0.00 39.88 1.73
6557 7115 9.845740 TTATCAACTAAATGAGCCTTGCTATTA 57.154 29.630 0.00 0.00 39.88 0.98
6558 7116 7.553881 TCAACTAAATGAGCCTTGCTATTAC 57.446 36.000 0.00 0.00 39.88 1.89
6559 7117 7.109501 TCAACTAAATGAGCCTTGCTATTACA 58.890 34.615 0.00 0.00 39.88 2.41
6560 7118 7.609918 TCAACTAAATGAGCCTTGCTATTACAA 59.390 33.333 0.00 0.00 39.88 2.41
6561 7119 7.559590 ACTAAATGAGCCTTGCTATTACAAG 57.440 36.000 0.00 0.00 45.42 3.16
6562 7120 4.907879 AATGAGCCTTGCTATTACAAGC 57.092 40.909 0.00 0.00 44.66 4.01
6563 7121 2.643551 TGAGCCTTGCTATTACAAGCC 58.356 47.619 0.00 0.00 44.66 4.35
6564 7122 2.026356 TGAGCCTTGCTATTACAAGCCA 60.026 45.455 0.00 0.00 44.66 4.75
6565 7123 3.217626 GAGCCTTGCTATTACAAGCCAT 58.782 45.455 0.00 0.00 44.66 4.40
6566 7124 3.633986 GAGCCTTGCTATTACAAGCCATT 59.366 43.478 0.00 0.00 44.66 3.16
6567 7125 4.026052 AGCCTTGCTATTACAAGCCATTT 58.974 39.130 0.00 0.00 44.66 2.32
6568 7126 4.114794 GCCTTGCTATTACAAGCCATTTG 58.885 43.478 0.00 0.00 44.66 2.32
6569 7127 4.142182 GCCTTGCTATTACAAGCCATTTGA 60.142 41.667 0.00 0.00 44.66 2.69
6570 7128 5.585390 CCTTGCTATTACAAGCCATTTGAG 58.415 41.667 0.00 0.00 44.66 3.02
6571 7129 5.450965 CCTTGCTATTACAAGCCATTTGAGG 60.451 44.000 0.00 0.00 44.66 3.86
6572 7130 4.854173 TGCTATTACAAGCCATTTGAGGA 58.146 39.130 0.00 0.00 42.05 3.71
6573 7131 4.883585 TGCTATTACAAGCCATTTGAGGAG 59.116 41.667 0.00 0.00 42.05 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.788229 TATGAGCATCCAGGTTCCGA 58.212 50.000 0.00 0.00 0.00 4.55
248 254 2.489329 TCACTTAAGCCTTGCAAGCATC 59.511 45.455 21.43 11.62 0.00 3.91
466 475 8.722480 TTCTTCATGACTTATACATGTTCCTG 57.278 34.615 2.30 0.00 43.56 3.86
699 722 7.925043 TGCTAGAATTGTATTAACCGGAAAA 57.075 32.000 9.46 1.16 0.00 2.29
786 818 7.093814 TGGAGTGACAAATTGAAGGAAATATGG 60.094 37.037 0.00 0.00 0.00 2.74
832 864 7.665974 CCTCCTATTTTGTCAACCTTAAGAAGT 59.334 37.037 3.36 0.00 0.00 3.01
869 901 8.167392 TCTGGACCATCTTTCCTTTTATTGTTA 58.833 33.333 0.00 0.00 33.84 2.41
1015 1048 0.097325 GACACTCGCTCCAGACTACG 59.903 60.000 0.00 0.00 0.00 3.51
1046 1079 0.449388 CATCGCCAAAGCCTCTGAAC 59.551 55.000 0.00 0.00 34.57 3.18
1135 1331 2.984471 TCGACATAACTGCGTTCTTCAC 59.016 45.455 0.00 0.00 0.00 3.18
1161 1376 5.168526 TGATGTCTTTGAAAACAACTCCG 57.831 39.130 0.00 0.00 0.00 4.63
1166 1381 6.929625 TGGAACTTGATGTCTTTGAAAACAA 58.070 32.000 0.00 0.00 0.00 2.83
1191 1406 5.197451 ACTTCACTAAATCCCACACACAAA 58.803 37.500 0.00 0.00 0.00 2.83
1195 1410 5.530915 CAGAAACTTCACTAAATCCCACACA 59.469 40.000 0.00 0.00 0.00 3.72
1291 1667 0.952497 AGCCAAGTCTCACATGTGCG 60.952 55.000 21.38 15.52 0.00 5.34
1409 1820 2.038490 GTACGGACCTCCAGGGGT 59.962 66.667 0.00 0.00 43.07 4.95
1410 1821 2.762875 GGTACGGACCTCCAGGGG 60.763 72.222 10.47 0.00 43.16 4.79
1417 1828 5.505627 AAGGTTATCCCTGGTACGGACCT 62.506 52.174 19.95 0.00 45.47 3.85
1418 1829 1.690527 AGGTTATCCCTGGTACGGACC 60.691 57.143 10.93 10.93 44.08 4.46
1419 1830 1.785647 AGGTTATCCCTGGTACGGAC 58.214 55.000 0.00 0.00 44.08 4.79
1420 1831 2.292389 TGAAGGTTATCCCTGGTACGGA 60.292 50.000 0.00 0.00 45.47 4.69
1421 1832 2.112998 TGAAGGTTATCCCTGGTACGG 58.887 52.381 0.00 0.00 45.47 4.02
1422 1833 4.417426 AATGAAGGTTATCCCTGGTACG 57.583 45.455 0.00 0.00 45.47 3.67
1423 1834 6.496144 ACTAATGAAGGTTATCCCTGGTAC 57.504 41.667 0.00 0.00 45.47 3.34
1424 1835 6.445786 ACAACTAATGAAGGTTATCCCTGGTA 59.554 38.462 0.00 0.00 45.47 3.25
1425 1836 5.253096 ACAACTAATGAAGGTTATCCCTGGT 59.747 40.000 0.00 0.00 45.47 4.00
1426 1837 5.755849 ACAACTAATGAAGGTTATCCCTGG 58.244 41.667 0.00 0.00 45.47 4.45
1427 1838 7.112779 AGAACAACTAATGAAGGTTATCCCTG 58.887 38.462 0.00 0.00 45.47 4.45
1429 1840 7.110155 TGAGAACAACTAATGAAGGTTATCCC 58.890 38.462 0.00 0.00 30.83 3.85
1446 1858 5.302568 AGTGATTTGAGCCATTTGAGAACAA 59.697 36.000 0.00 0.00 0.00 2.83
1512 1924 3.236816 CATCGAATTGAGTTGTTGGTGC 58.763 45.455 0.00 0.00 0.00 5.01
1514 1926 3.750371 TCCATCGAATTGAGTTGTTGGT 58.250 40.909 0.00 0.00 0.00 3.67
1545 1957 0.974010 TTTCGTAGATGGGTCGGCCT 60.974 55.000 5.77 0.00 35.04 5.19
1546 1958 0.106149 ATTTCGTAGATGGGTCGGCC 59.894 55.000 0.00 0.00 35.04 6.13
1556 1968 3.261580 CATGCTGGACACATTTCGTAGA 58.738 45.455 0.00 0.00 0.00 2.59
1589 2001 0.036306 ACTAAAAGGACAGTGCCCGG 59.964 55.000 0.00 0.00 0.00 5.73
1590 2002 1.439679 GACTAAAAGGACAGTGCCCG 58.560 55.000 0.00 0.00 0.00 6.13
1597 2009 2.036733 CGGACACAGGACTAAAAGGACA 59.963 50.000 0.00 0.00 0.00 4.02
1598 2010 2.612221 CCGGACACAGGACTAAAAGGAC 60.612 54.545 0.00 0.00 0.00 3.85
1599 2011 1.621814 CCGGACACAGGACTAAAAGGA 59.378 52.381 0.00 0.00 0.00 3.36
1628 2040 0.180406 GGACCGGCTAATGGACACAT 59.820 55.000 0.00 0.00 39.54 3.21
1629 2041 1.600107 GGACCGGCTAATGGACACA 59.400 57.895 0.00 0.00 0.00 3.72
1634 2046 3.141522 TACGCGGACCGGCTAATGG 62.142 63.158 17.22 0.00 42.52 3.16
1691 2103 4.515191 TGTTGCTGAGGATTTTGTGTCTAC 59.485 41.667 0.00 0.00 0.00 2.59
1720 2132 4.202223 ACTTTGAATCGGTGTGTGTCTACT 60.202 41.667 0.00 0.00 0.00 2.57
1736 2148 2.301577 CCCGTTTGGCAAACTTTGAA 57.698 45.000 33.01 1.38 39.23 2.69
1767 2179 3.301554 CACAATTGCGGTGGGCCA 61.302 61.111 0.00 0.00 42.61 5.36
1801 2213 4.678574 CGTCCAATAATCGTGACCCTGTAA 60.679 45.833 0.00 0.00 0.00 2.41
1802 2214 3.181484 CGTCCAATAATCGTGACCCTGTA 60.181 47.826 0.00 0.00 0.00 2.74
1806 2218 1.137479 TCCGTCCAATAATCGTGACCC 59.863 52.381 0.00 0.00 0.00 4.46
1809 2221 1.202325 CGGTCCGTCCAATAATCGTGA 60.202 52.381 2.08 0.00 35.57 4.35
1866 2278 3.174375 CGTTTACTAACTAGGTCGTGCC 58.826 50.000 0.00 0.00 32.78 5.01
1894 2306 2.666862 TGCTAAACGTGCCACCGG 60.667 61.111 0.00 0.00 0.00 5.28
1919 2331 3.181480 CCCAACGGGCTAAAAATATGTGG 60.181 47.826 0.00 0.00 35.35 4.17
1962 2374 7.173735 ACGGCCCGTTTCTTATATTATTTTAGG 59.826 37.037 1.02 0.00 36.35 2.69
1963 2375 8.013378 CACGGCCCGTTTCTTATATTATTTTAG 58.987 37.037 5.76 0.00 38.32 1.85
1964 2376 7.520292 GCACGGCCCGTTTCTTATATTATTTTA 60.520 37.037 5.76 0.00 38.32 1.52
1965 2377 6.731164 CACGGCCCGTTTCTTATATTATTTT 58.269 36.000 5.76 0.00 38.32 1.82
1966 2378 5.278120 GCACGGCCCGTTTCTTATATTATTT 60.278 40.000 5.76 0.00 38.32 1.40
1967 2379 4.214758 GCACGGCCCGTTTCTTATATTATT 59.785 41.667 5.76 0.00 38.32 1.40
1968 2380 3.749609 GCACGGCCCGTTTCTTATATTAT 59.250 43.478 5.76 0.00 38.32 1.28
1969 2381 3.132925 GCACGGCCCGTTTCTTATATTA 58.867 45.455 5.76 0.00 38.32 0.98
1972 2384 0.462403 GGCACGGCCCGTTTCTTATA 60.462 55.000 5.76 0.00 44.06 0.98
2027 2449 0.324943 TTTCTTTCGGGGAGCAGAGG 59.675 55.000 0.00 0.00 0.00 3.69
2028 2450 1.677217 CCTTTCTTTCGGGGAGCAGAG 60.677 57.143 0.00 0.00 0.00 3.35
2031 2453 1.131303 TCCCTTTCTTTCGGGGAGCA 61.131 55.000 0.00 0.00 43.58 4.26
2038 2460 0.393132 GGCCCTCTCCCTTTCTTTCG 60.393 60.000 0.00 0.00 0.00 3.46
2045 2467 1.084018 TTTGATTGGCCCTCTCCCTT 58.916 50.000 0.00 0.00 0.00 3.95
2047 2469 1.478631 CTTTTGATTGGCCCTCTCCC 58.521 55.000 0.00 0.00 0.00 4.30
2093 2517 0.912486 CCAACGGGGAAAGAGGAGAT 59.088 55.000 0.00 0.00 40.01 2.75
2240 2678 4.980805 TTGTGCCGCTGTCGTCCC 62.981 66.667 0.00 0.00 0.00 4.46
2592 3030 1.396996 CCGTGTTTAATTGCTCCGGAG 59.603 52.381 27.83 27.83 36.12 4.63
2593 3031 1.444836 CCGTGTTTAATTGCTCCGGA 58.555 50.000 2.93 2.93 36.12 5.14
2641 3088 2.370189 GGGAGGAACATATGAGAGGGTG 59.630 54.545 10.38 0.00 0.00 4.61
2876 3327 0.835276 GGGATTAACCGTACAGGGCT 59.165 55.000 8.31 0.00 46.96 5.19
2884 3335 1.364269 TTGGTGAGGGGATTAACCGT 58.636 50.000 0.00 0.00 40.11 4.83
2885 3336 2.365582 CTTTGGTGAGGGGATTAACCG 58.634 52.381 0.00 0.00 40.11 4.44
3018 3469 0.965363 ACGGGTGGATTTGCACATCC 60.965 55.000 22.64 22.64 43.03 3.51
3068 3519 5.700373 TGCAGAAAATATTGCTTTCCCAAAC 59.300 36.000 0.00 0.00 40.87 2.93
3193 3644 6.428159 TCTTCTCTAACCTTCTCATTTGCAAC 59.572 38.462 0.00 0.00 0.00 4.17
3245 3696 7.757624 CACAGTTTAAGCTGTTGAAACCTTAAA 59.242 33.333 20.87 10.67 46.45 1.52
3281 3732 2.004583 TCTACACCGATCAAAAGCCG 57.995 50.000 0.00 0.00 0.00 5.52
3374 3826 6.225318 AGATGTATGCATGTTTTGTTGCTTT 58.775 32.000 10.16 0.00 39.60 3.51
3405 3857 9.896645 ATATGAAAACCATATGCAGGAGTATAG 57.103 33.333 0.00 0.00 44.52 1.31
3456 3908 8.683615 ACCTTAACTAAAAGAGTTCAACAAAGG 58.316 33.333 11.68 11.68 45.81 3.11
3526 3978 4.591321 TCAAAACCATAAGCAGGAGGAT 57.409 40.909 0.00 0.00 0.00 3.24
3528 3980 4.019174 ACATCAAAACCATAAGCAGGAGG 58.981 43.478 0.00 0.00 0.00 4.30
3536 3988 9.237187 TGAGCATACTAAACATCAAAACCATAA 57.763 29.630 0.00 0.00 0.00 1.90
3549 4001 5.368989 AGCATAAGGGTGAGCATACTAAAC 58.631 41.667 0.00 0.00 0.00 2.01
3591 4043 3.790123 GCTTTCATTTGCGCCTTAGCTAG 60.790 47.826 4.18 0.00 38.13 3.42
3602 4054 5.947443 ACAGATTCTACTGCTTTCATTTGC 58.053 37.500 0.00 0.00 41.06 3.68
3652 4104 6.845908 AGGACACAGATTATCAAAGCCATAT 58.154 36.000 0.00 0.00 0.00 1.78
3677 4129 5.129485 TCCAACAAAGAAAAACATAAGGGCA 59.871 36.000 0.00 0.00 0.00 5.36
3678 4130 5.465390 GTCCAACAAAGAAAAACATAAGGGC 59.535 40.000 0.00 0.00 0.00 5.19
3696 4148 6.935208 ACCACTCATAACTAAAAGAGTCCAAC 59.065 38.462 0.00 0.00 39.17 3.77
3705 4157 8.665643 TCGAAGAAAACCACTCATAACTAAAA 57.334 30.769 0.00 0.00 0.00 1.52
3755 4207 7.860872 TGTCTATACTCTATACACATGCAAACG 59.139 37.037 0.00 0.00 0.00 3.60
3891 4343 7.169982 GCAGTAGAATGTTACAGCTAGTATTGG 59.830 40.741 5.47 0.00 34.40 3.16
3922 4374 7.465245 GCCGAATCAAAACAAAGAAAAACATGA 60.465 33.333 0.00 0.00 0.00 3.07
3972 4424 4.393062 GTCAAAGATGATGACACGGACATT 59.607 41.667 2.01 0.00 45.13 2.71
4015 4467 4.960938 TCTATTGACCATAGAGCGCAATT 58.039 39.130 11.47 0.00 39.27 2.32
4057 4509 0.745845 GTACACCAGCAGAGCCATGG 60.746 60.000 7.63 7.63 40.10 3.66
4059 4511 0.914644 ATGTACACCAGCAGAGCCAT 59.085 50.000 0.00 0.00 0.00 4.40
4117 4569 3.116629 AGTGATATTACCCGGGGAAGGTA 60.117 47.826 25.68 13.09 38.89 3.08
4239 4692 8.774586 TCTGAATTTACTTTCTACTCAAAGTGC 58.225 33.333 8.52 0.00 44.63 4.40
4295 4748 8.040132 TGTTTAGTCATGATCATGTGTCACATA 58.960 33.333 30.01 14.37 36.53 2.29
4338 4791 5.704354 AGGGATTTTTGGGCTGAAAAATTT 58.296 33.333 16.35 0.00 42.76 1.82
4358 4811 1.162698 CAGTGTGACAGATGCAAGGG 58.837 55.000 0.00 0.00 0.00 3.95
4383 4836 7.423844 AAAAATCTACTCCCCATTCATTTCC 57.576 36.000 0.00 0.00 0.00 3.13
4408 4861 2.097396 CGTGTAACTGAACTCAAGCACG 60.097 50.000 0.00 0.00 41.44 5.34
4418 4871 3.006003 TGTGGATAGTGCGTGTAACTGAA 59.994 43.478 0.00 0.00 31.75 3.02
4438 4891 2.364324 TCTCAAGTAAAGTGGACGCTGT 59.636 45.455 0.00 0.00 0.00 4.40
4439 4892 3.026630 TCTCAAGTAAAGTGGACGCTG 57.973 47.619 0.00 0.00 0.00 5.18
4440 4893 3.511934 AGATCTCAAGTAAAGTGGACGCT 59.488 43.478 0.00 0.00 0.00 5.07
4467 4920 3.058155 ACTCTGCTAACACTCTACACACG 60.058 47.826 0.00 0.00 0.00 4.49
4471 4924 4.218635 CCTGAACTCTGCTAACACTCTACA 59.781 45.833 0.00 0.00 0.00 2.74
4484 4937 3.540314 CAGAGATTCCCCTGAACTCTG 57.460 52.381 0.00 0.00 42.87 3.35
4511 4964 5.422331 TGTTGTAGGGGAAAACAAAATGTGA 59.578 36.000 0.00 0.00 37.35 3.58
4550 5003 5.106830 GGTACACGTGAACATAAAAAGGAGG 60.107 44.000 25.01 0.00 0.00 4.30
4568 5021 1.271379 TCACTCACATGTCGGGTACAC 59.729 52.381 0.00 0.00 42.09 2.90
4577 5030 1.001746 CACAGCCTCTCACTCACATGT 59.998 52.381 0.00 0.00 0.00 3.21
4600 5055 0.610687 CTCACTGGTTCACTCTCCCC 59.389 60.000 0.00 0.00 0.00 4.81
4616 5071 3.671740 ATAGCAGAGTAGACACCCTCA 57.328 47.619 0.00 0.00 0.00 3.86
4677 5132 5.007682 AGACCGGCATAACTTAAACACAAT 58.992 37.500 0.00 0.00 0.00 2.71
4684 5139 4.076394 AGCAAAAGACCGGCATAACTTAA 58.924 39.130 0.00 0.00 0.00 1.85
4743 5198 6.971527 TTAAACATGTAACGGTGAATCGAT 57.028 33.333 0.00 0.00 0.00 3.59
4898 5353 9.334947 CTTGTTGATCACTGAATCTATACCAAT 57.665 33.333 0.00 0.00 0.00 3.16
4926 5381 5.560724 TCAAGAGCAACAATAAAGCTAGGT 58.439 37.500 0.00 0.00 39.02 3.08
4979 5434 3.525609 TGATTAACCATACCTGCCAGGAA 59.474 43.478 19.90 0.00 37.67 3.36
4984 5439 6.376018 TGTTTTACTGATTAACCATACCTGCC 59.624 38.462 0.00 0.00 0.00 4.85
5045 5500 0.788391 GTTCGCTTGGTCACCGTTAG 59.212 55.000 0.00 0.00 0.00 2.34
5046 5501 0.390124 AGTTCGCTTGGTCACCGTTA 59.610 50.000 0.00 0.00 0.00 3.18
5047 5502 0.390124 TAGTTCGCTTGGTCACCGTT 59.610 50.000 0.00 0.00 0.00 4.44
5149 5605 0.325933 CTGGACTGCAGGAATCACCA 59.674 55.000 19.93 14.88 42.04 4.17
5150 5606 0.615331 TCTGGACTGCAGGAATCACC 59.385 55.000 19.93 11.27 39.35 4.02
5151 5607 1.552337 TCTCTGGACTGCAGGAATCAC 59.448 52.381 19.93 1.76 0.00 3.06
5194 5650 2.850439 GCATTCTGCACAGCTCTCA 58.150 52.632 0.00 0.00 44.26 3.27
5228 5684 5.748402 ACAGCAATGAATCTCATAACCTCA 58.252 37.500 0.00 0.00 35.76 3.86
5294 5750 1.302832 CTCCCCAGGCAACACAGAC 60.303 63.158 0.00 0.00 41.41 3.51
5319 5775 4.389992 CACATGCCACGAGGTAATCATATC 59.610 45.833 0.00 0.00 37.19 1.63
5349 5805 2.901192 TCCTCACGTCAAGGATAAACCA 59.099 45.455 11.37 0.00 38.01 3.67
5350 5806 3.522553 CTCCTCACGTCAAGGATAAACC 58.477 50.000 14.93 0.00 42.01 3.27
5364 5820 2.892425 CGCCAATCGCCTCCTCAC 60.892 66.667 0.00 0.00 0.00 3.51
5413 5869 4.381398 CGAATCTCTGTCTGTCAACCTCAT 60.381 45.833 0.00 0.00 0.00 2.90
5419 5875 4.676459 GCTGATCGAATCTCTGTCTGTCAA 60.676 45.833 0.00 0.00 0.00 3.18
5423 5879 3.066481 TCAGCTGATCGAATCTCTGTCTG 59.934 47.826 13.74 0.10 34.53 3.51
5483 5939 1.654105 CGCCGTGTATCAGAAGTGAAC 59.346 52.381 0.00 0.00 35.88 3.18
5505 5961 0.965866 TTCTCCTGCCGTCGAGTCAT 60.966 55.000 0.00 0.00 0.00 3.06
5529 5985 1.160137 GGATCCTGGATATTGCGCAC 58.840 55.000 11.12 0.00 0.00 5.34
5560 6016 1.134461 ACAGGCTCTAAGCATCTGCAG 60.134 52.381 7.63 7.63 44.75 4.41
5618 6074 1.428448 CGTGGAGCTGATTTGTTCGA 58.572 50.000 0.00 0.00 0.00 3.71
5620 6076 3.683581 GCGTGGAGCTGATTTGTTC 57.316 52.632 0.00 0.00 44.04 3.18
5884 6421 7.394016 ACATCAACTACCACAAGACATAATGA 58.606 34.615 0.00 0.00 0.00 2.57
5885 6422 7.615582 ACATCAACTACCACAAGACATAATG 57.384 36.000 0.00 0.00 0.00 1.90
5896 6433 3.119602 TCAGCGACTACATCAACTACCAC 60.120 47.826 0.00 0.00 0.00 4.16
5899 6436 4.358494 ACTCAGCGACTACATCAACTAC 57.642 45.455 0.00 0.00 0.00 2.73
5958 6505 0.734889 CTGCAAGTGGATTAAGCGGG 59.265 55.000 0.00 0.00 0.00 6.13
5983 6530 9.650539 ATCTGCAGCTTATTTACAGATGTATAG 57.349 33.333 9.47 0.00 44.29 1.31
6005 6552 4.654091 AAGGTGTTTGTTTGGACATCTG 57.346 40.909 0.00 0.00 37.31 2.90
6015 6565 6.756542 GCAAGTTTCTCATTAAGGTGTTTGTT 59.243 34.615 0.00 0.00 0.00 2.83
6087 6638 8.216423 AGAATACTGCACATTTATTCCTCTCAT 58.784 33.333 8.16 0.00 34.16 2.90
6162 6715 9.871238 CGCAGGGTATCAACTATAGTTTATAAT 57.129 33.333 15.60 9.39 35.83 1.28
6185 6738 2.779951 ATTCACCACAGCTACGCGCA 62.780 55.000 5.73 0.00 42.61 6.09
6190 6743 2.417933 CAGCAGAATTCACCACAGCTAC 59.582 50.000 8.44 0.00 0.00 3.58
6256 6810 2.094390 TGCATCCACGTTCCTACTGTAC 60.094 50.000 0.00 0.00 0.00 2.90
6257 6811 2.172679 TGCATCCACGTTCCTACTGTA 58.827 47.619 0.00 0.00 0.00 2.74
6258 6812 0.973632 TGCATCCACGTTCCTACTGT 59.026 50.000 0.00 0.00 0.00 3.55
6259 6813 2.093306 TTGCATCCACGTTCCTACTG 57.907 50.000 0.00 0.00 0.00 2.74
6260 6814 2.851263 TTTGCATCCACGTTCCTACT 57.149 45.000 0.00 0.00 0.00 2.57
6345 6899 4.385358 TGTTTTTCTTCAGCTTTGACCC 57.615 40.909 0.00 0.00 0.00 4.46
6356 6910 3.493129 GGGCCGAACAATTGTTTTTCTTC 59.507 43.478 24.02 10.10 38.56 2.87
6358 6912 2.432510 TGGGCCGAACAATTGTTTTTCT 59.567 40.909 24.02 2.03 38.56 2.52
6366 6920 2.837031 ATCGCCTGGGCCGAACAATT 62.837 55.000 5.99 0.00 37.98 2.32
6397 6955 4.497006 GCATATCAGCTCATGTGGTTTCAC 60.497 45.833 0.00 0.00 43.87 3.18
6399 6957 3.303593 CGCATATCAGCTCATGTGGTTTC 60.304 47.826 0.00 0.00 0.00 2.78
6400 6958 2.615447 CGCATATCAGCTCATGTGGTTT 59.385 45.455 0.00 0.00 0.00 3.27
6401 6959 2.216046 CGCATATCAGCTCATGTGGTT 58.784 47.619 0.00 0.00 0.00 3.67
6402 6960 1.139654 ACGCATATCAGCTCATGTGGT 59.860 47.619 14.33 0.00 37.05 4.16
6403 6961 1.797046 GACGCATATCAGCTCATGTGG 59.203 52.381 14.33 1.16 37.05 4.17
6404 6962 1.454653 CGACGCATATCAGCTCATGTG 59.545 52.381 10.15 10.15 38.37 3.21
6405 6963 1.775869 CGACGCATATCAGCTCATGT 58.224 50.000 0.00 0.00 0.00 3.21
6406 6964 0.437678 GCGACGCATATCAGCTCATG 59.562 55.000 16.42 0.00 0.00 3.07
6458 7016 7.781324 AAATCATGGATGTAAACCTCTTTGT 57.219 32.000 0.00 0.00 0.00 2.83
6460 7018 9.308000 TGTAAAATCATGGATGTAAACCTCTTT 57.692 29.630 0.00 0.00 0.00 2.52
6468 7026 7.341512 TCAGCCATTGTAAAATCATGGATGTAA 59.658 33.333 13.74 0.00 45.76 2.41
6469 7027 6.832900 TCAGCCATTGTAAAATCATGGATGTA 59.167 34.615 13.74 1.14 45.76 2.29
6470 7028 5.657745 TCAGCCATTGTAAAATCATGGATGT 59.342 36.000 13.74 0.00 45.76 3.06
6471 7029 6.151663 TCAGCCATTGTAAAATCATGGATG 57.848 37.500 8.98 8.98 46.63 3.51
6472 7030 6.325545 ACATCAGCCATTGTAAAATCATGGAT 59.674 34.615 1.45 0.00 34.46 3.41
6473 7031 5.657745 ACATCAGCCATTGTAAAATCATGGA 59.342 36.000 1.45 0.00 34.46 3.41
6474 7032 5.909477 ACATCAGCCATTGTAAAATCATGG 58.091 37.500 0.00 0.00 35.59 3.66
6475 7033 7.837202 AAACATCAGCCATTGTAAAATCATG 57.163 32.000 0.00 0.00 0.00 3.07
6476 7034 8.970020 TCTAAACATCAGCCATTGTAAAATCAT 58.030 29.630 0.00 0.00 0.00 2.45
6477 7035 8.347004 TCTAAACATCAGCCATTGTAAAATCA 57.653 30.769 0.00 0.00 0.00 2.57
6478 7036 9.807649 AATCTAAACATCAGCCATTGTAAAATC 57.192 29.630 0.00 0.00 0.00 2.17
6479 7037 9.590451 CAATCTAAACATCAGCCATTGTAAAAT 57.410 29.630 0.00 0.00 0.00 1.82
6480 7038 7.545265 GCAATCTAAACATCAGCCATTGTAAAA 59.455 33.333 0.00 0.00 0.00 1.52
6481 7039 7.035004 GCAATCTAAACATCAGCCATTGTAAA 58.965 34.615 0.00 0.00 0.00 2.01
6482 7040 6.405731 GGCAATCTAAACATCAGCCATTGTAA 60.406 38.462 0.00 0.00 40.29 2.41
6483 7041 5.067674 GGCAATCTAAACATCAGCCATTGTA 59.932 40.000 0.00 0.00 40.29 2.41
6484 7042 4.142093 GGCAATCTAAACATCAGCCATTGT 60.142 41.667 0.00 0.00 40.29 2.71
6485 7043 4.098960 AGGCAATCTAAACATCAGCCATTG 59.901 41.667 0.00 0.00 42.90 2.82
6486 7044 4.284178 AGGCAATCTAAACATCAGCCATT 58.716 39.130 0.00 0.00 42.90 3.16
6487 7045 3.907221 AGGCAATCTAAACATCAGCCAT 58.093 40.909 0.00 0.00 42.90 4.40
6488 7046 3.370840 AGGCAATCTAAACATCAGCCA 57.629 42.857 0.00 0.00 42.90 4.75
6489 7047 3.251972 GCTAGGCAATCTAAACATCAGCC 59.748 47.826 0.00 0.00 40.85 4.85
6490 7048 4.133078 AGCTAGGCAATCTAAACATCAGC 58.867 43.478 0.00 0.00 0.00 4.26
6491 7049 5.819379 TGAAGCTAGGCAATCTAAACATCAG 59.181 40.000 0.00 0.00 0.00 2.90
6492 7050 5.744171 TGAAGCTAGGCAATCTAAACATCA 58.256 37.500 0.00 0.00 0.00 3.07
6493 7051 6.683974 TTGAAGCTAGGCAATCTAAACATC 57.316 37.500 0.00 0.00 0.00 3.06
6494 7052 6.403636 CGTTTGAAGCTAGGCAATCTAAACAT 60.404 38.462 0.00 0.00 0.00 2.71
6495 7053 5.106712 CGTTTGAAGCTAGGCAATCTAAACA 60.107 40.000 0.00 0.00 0.00 2.83
6496 7054 5.324697 CGTTTGAAGCTAGGCAATCTAAAC 58.675 41.667 0.00 0.00 0.00 2.01
6497 7055 4.142687 GCGTTTGAAGCTAGGCAATCTAAA 60.143 41.667 0.00 0.00 0.00 1.85
6498 7056 3.374058 GCGTTTGAAGCTAGGCAATCTAA 59.626 43.478 0.00 0.00 0.00 2.10
6499 7057 2.936498 GCGTTTGAAGCTAGGCAATCTA 59.064 45.455 0.00 0.00 0.00 1.98
6500 7058 1.740025 GCGTTTGAAGCTAGGCAATCT 59.260 47.619 0.00 0.00 0.00 2.40
6501 7059 1.468520 TGCGTTTGAAGCTAGGCAATC 59.531 47.619 0.00 0.00 32.83 2.67
6502 7060 1.533625 TGCGTTTGAAGCTAGGCAAT 58.466 45.000 0.00 0.00 32.83 3.56
6503 7061 1.533625 ATGCGTTTGAAGCTAGGCAA 58.466 45.000 5.75 0.00 38.46 4.52
6504 7062 2.279741 CTATGCGTTTGAAGCTAGGCA 58.720 47.619 4.23 4.23 39.18 4.75
6505 7063 1.599542 CCTATGCGTTTGAAGCTAGGC 59.400 52.381 0.00 0.00 32.82 3.93
6506 7064 2.866762 GTCCTATGCGTTTGAAGCTAGG 59.133 50.000 0.00 7.11 37.10 3.02
6507 7065 3.521560 TGTCCTATGCGTTTGAAGCTAG 58.478 45.455 0.00 0.00 35.28 3.42
6508 7066 3.603158 TGTCCTATGCGTTTGAAGCTA 57.397 42.857 0.00 0.00 35.28 3.32
6509 7067 2.472695 TGTCCTATGCGTTTGAAGCT 57.527 45.000 0.00 0.00 35.28 3.74
6510 7068 2.484264 ACTTGTCCTATGCGTTTGAAGC 59.516 45.455 0.00 0.00 0.00 3.86
6511 7069 4.749245 AACTTGTCCTATGCGTTTGAAG 57.251 40.909 0.00 0.00 0.00 3.02
6512 7070 5.935206 TGATAACTTGTCCTATGCGTTTGAA 59.065 36.000 0.00 0.00 0.00 2.69
6513 7071 5.483811 TGATAACTTGTCCTATGCGTTTGA 58.516 37.500 0.00 0.00 0.00 2.69
6514 7072 5.794687 TGATAACTTGTCCTATGCGTTTG 57.205 39.130 0.00 0.00 0.00 2.93
6515 7073 5.938125 AGTTGATAACTTGTCCTATGCGTTT 59.062 36.000 0.00 0.00 39.04 3.60
6516 7074 5.488341 AGTTGATAACTTGTCCTATGCGTT 58.512 37.500 0.00 0.00 39.04 4.84
6517 7075 5.086104 AGTTGATAACTTGTCCTATGCGT 57.914 39.130 0.00 0.00 39.04 5.24
6518 7076 7.534085 TTTAGTTGATAACTTGTCCTATGCG 57.466 36.000 0.00 0.00 42.81 4.73
6519 7077 9.109393 TCATTTAGTTGATAACTTGTCCTATGC 57.891 33.333 0.00 0.00 42.81 3.14
6521 7079 9.331282 GCTCATTTAGTTGATAACTTGTCCTAT 57.669 33.333 0.00 0.00 42.81 2.57
6522 7080 7.769044 GGCTCATTTAGTTGATAACTTGTCCTA 59.231 37.037 0.00 0.00 42.81 2.94
6523 7081 6.599638 GGCTCATTTAGTTGATAACTTGTCCT 59.400 38.462 0.00 0.00 42.81 3.85
6524 7082 6.599638 AGGCTCATTTAGTTGATAACTTGTCC 59.400 38.462 0.00 0.62 42.81 4.02
6525 7083 7.617041 AGGCTCATTTAGTTGATAACTTGTC 57.383 36.000 0.00 0.00 42.81 3.18
6526 7084 7.575720 GCAAGGCTCATTTAGTTGATAACTTGT 60.576 37.037 0.00 0.00 42.81 3.16
6527 7085 6.749118 GCAAGGCTCATTTAGTTGATAACTTG 59.251 38.462 0.00 0.00 42.81 3.16
6528 7086 6.660949 AGCAAGGCTCATTTAGTTGATAACTT 59.339 34.615 0.00 0.00 37.33 2.66
6529 7087 6.183347 AGCAAGGCTCATTTAGTTGATAACT 58.817 36.000 0.00 0.00 39.08 2.24
6530 7088 6.442513 AGCAAGGCTCATTTAGTTGATAAC 57.557 37.500 0.00 0.00 30.62 1.89
6531 7089 8.752005 AATAGCAAGGCTCATTTAGTTGATAA 57.248 30.769 0.00 0.00 40.44 1.75
6532 7090 9.273016 GTAATAGCAAGGCTCATTTAGTTGATA 57.727 33.333 0.00 0.00 40.44 2.15
6533 7091 7.775093 TGTAATAGCAAGGCTCATTTAGTTGAT 59.225 33.333 0.00 0.00 40.44 2.57
6534 7092 7.109501 TGTAATAGCAAGGCTCATTTAGTTGA 58.890 34.615 0.00 0.00 40.44 3.18
6535 7093 7.320443 TGTAATAGCAAGGCTCATTTAGTTG 57.680 36.000 0.00 0.00 40.44 3.16
6536 7094 7.415653 GCTTGTAATAGCAAGGCTCATTTAGTT 60.416 37.037 7.75 0.00 44.29 2.24
6537 7095 6.038714 GCTTGTAATAGCAAGGCTCATTTAGT 59.961 38.462 7.75 0.00 44.29 2.24
6538 7096 6.433766 GCTTGTAATAGCAAGGCTCATTTAG 58.566 40.000 7.75 0.00 44.29 1.85
6539 7097 6.377327 GCTTGTAATAGCAAGGCTCATTTA 57.623 37.500 7.75 0.00 44.29 1.40
6540 7098 5.254339 GCTTGTAATAGCAAGGCTCATTT 57.746 39.130 7.75 0.00 44.29 2.32
6541 7099 4.907879 GCTTGTAATAGCAAGGCTCATT 57.092 40.909 7.75 0.00 44.29 2.57
6547 7105 5.450965 CCTCAAATGGCTTGTAATAGCAAGG 60.451 44.000 7.75 0.00 44.29 3.61
6548 7106 5.357878 TCCTCAAATGGCTTGTAATAGCAAG 59.642 40.000 0.00 1.84 46.21 4.01
6549 7107 5.260424 TCCTCAAATGGCTTGTAATAGCAA 58.740 37.500 0.00 0.00 43.02 3.91
6550 7108 4.854173 TCCTCAAATGGCTTGTAATAGCA 58.146 39.130 0.00 0.00 43.02 3.49
6551 7109 5.429957 CTCCTCAAATGGCTTGTAATAGC 57.570 43.478 0.00 0.00 40.48 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.