Multiple sequence alignment - TraesCS6A01G406100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G406100 chr6A 100.000 3978 0 0 1 3978 611578930 611574953 0.000000e+00 7347.0
1 TraesCS6A01G406100 chr6A 95.633 3183 74 28 843 3978 611666225 611663061 0.000000e+00 5048.0
2 TraesCS6A01G406100 chr6A 89.510 2021 102 27 1018 2997 611671262 611669311 0.000000e+00 2457.0
3 TraesCS6A01G406100 chr6A 87.627 590 41 14 1899 2462 611662982 611663565 0.000000e+00 656.0
4 TraesCS6A01G406100 chr6A 87.458 590 42 14 1899 2462 611574874 611575457 0.000000e+00 651.0
5 TraesCS6A01G406100 chr6A 93.473 429 25 2 3474 3901 611664577 611665003 5.610000e-178 634.0
6 TraesCS6A01G406100 chr6A 93.007 429 27 2 3474 3901 611576469 611576895 1.210000e-174 623.0
7 TraesCS6A01G406100 chr6A 91.415 431 32 2 3474 3901 611669852 611670280 1.590000e-163 586.0
8 TraesCS6A01G406100 chr6A 94.574 258 13 1 2998 3255 611669191 611668935 8.010000e-107 398.0
9 TraesCS6A01G406100 chr6A 77.880 217 34 12 290 501 520047302 520047509 5.400000e-24 122.0
10 TraesCS6A01G406100 chr6B 90.844 1529 61 26 1710 3197 709993534 709995024 0.000000e+00 1975.0
11 TraesCS6A01G406100 chr6B 86.239 872 108 6 2064 2927 709563007 709562140 0.000000e+00 935.0
12 TraesCS6A01G406100 chr6B 92.379 433 26 3 3474 3901 709994293 709993863 9.450000e-171 610.0
13 TraesCS6A01G406100 chr6B 80.588 680 78 25 641 1285 709992102 709992762 3.600000e-130 475.0
14 TraesCS6A01G406100 chr6B 86.520 408 45 3 3474 3873 709562602 709563007 1.310000e-119 440.0
15 TraesCS6A01G406100 chr6B 92.096 291 20 2 1413 1703 709992865 709993152 1.330000e-109 407.0
16 TraesCS6A01G406100 chr6B 81.132 106 16 2 486 587 554348551 554348656 9.160000e-12 82.4
17 TraesCS6A01G406100 chr6D 87.406 1461 111 22 1900 3306 465049496 465050937 0.000000e+00 1611.0
18 TraesCS6A01G406100 chr6D 88.998 509 46 3 3474 3978 465050075 465049573 4.370000e-174 621.0
19 TraesCS6A01G406100 chr6D 89.894 376 38 0 2339 2714 465054469 465054844 5.980000e-133 484.0
20 TraesCS6A01G406100 chr6D 93.548 124 8 0 3474 3597 465054592 465054469 6.790000e-43 185.0
21 TraesCS6A01G406100 chr6D 95.327 107 4 1 3334 3439 465051846 465051952 6.840000e-38 169.0
22 TraesCS6A01G406100 chr4B 91.561 237 16 3 1467 1703 502993258 502993490 1.380000e-84 324.0
23 TraesCS6A01G406100 chr4B 87.892 223 15 4 38 249 232154986 232154765 6.600000e-63 252.0
24 TraesCS6A01G406100 chr4B 86.937 222 19 3 38 249 613000825 613000604 1.430000e-59 241.0
25 TraesCS6A01G406100 chr1B 88.688 221 14 6 39 249 477129843 477130062 3.940000e-65 259.0
26 TraesCS6A01G406100 chr1B 84.135 208 17 12 38 240 666808456 666808652 1.890000e-43 187.0
27 TraesCS6A01G406100 chr1B 80.000 110 15 6 486 595 297469205 297469307 1.530000e-09 75.0
28 TraesCS6A01G406100 chr3B 88.288 222 16 2 38 249 456318119 456318340 1.420000e-64 257.0
29 TraesCS6A01G406100 chr5B 88.235 221 17 2 38 249 8878168 8878388 5.100000e-64 255.0
30 TraesCS6A01G406100 chr5B 81.000 200 32 6 307 501 666645752 666645554 1.910000e-33 154.0
31 TraesCS6A01G406100 chr5B 86.667 135 14 3 307 440 454693060 454693191 3.200000e-31 147.0
32 TraesCS6A01G406100 chr5B 82.400 125 14 7 495 616 66285585 66285704 7.030000e-18 102.0
33 TraesCS6A01G406100 chr5B 81.579 114 21 0 687 800 322327100 322326987 1.180000e-15 95.3
34 TraesCS6A01G406100 chr7B 87.444 223 17 3 38 249 609892473 609892251 3.070000e-61 246.0
35 TraesCS6A01G406100 chr7B 86.161 224 17 8 38 249 676012335 676012556 3.090000e-56 230.0
36 TraesCS6A01G406100 chr7B 84.653 202 25 4 486 681 642295148 642294947 3.140000e-46 196.0
37 TraesCS6A01G406100 chr7B 83.571 140 20 3 544 681 710336659 710336797 1.160000e-25 128.0
38 TraesCS6A01G406100 chr7B 88.571 70 6 2 495 564 572073215 572073282 2.550000e-12 84.2
39 TraesCS6A01G406100 chr2B 87.805 205 16 3 45 249 317098580 317098385 8.600000e-57 231.0
40 TraesCS6A01G406100 chr2B 81.773 203 28 6 303 501 777955043 777955240 1.140000e-35 161.0
41 TraesCS6A01G406100 chr2B 82.258 124 22 0 677 800 146713993 146714116 1.510000e-19 108.0
42 TraesCS6A01G406100 chr2B 81.443 97 16 2 495 590 24344594 24344499 1.190000e-10 78.7
43 TraesCS6A01G406100 chrUn 81.281 203 29 6 303 501 358062675 358062478 5.320000e-34 156.0
44 TraesCS6A01G406100 chrUn 81.281 203 29 6 303 501 427342536 427342339 5.320000e-34 156.0
45 TraesCS6A01G406100 chrUn 81.281 203 29 6 303 501 476208550 476208747 5.320000e-34 156.0
46 TraesCS6A01G406100 chr7D 81.095 201 30 7 303 501 529070852 529070658 1.910000e-33 154.0
47 TraesCS6A01G406100 chr7D 80.402 199 32 7 306 501 622279829 622279635 1.150000e-30 145.0
48 TraesCS6A01G406100 chr1D 79.891 184 27 9 419 599 365801938 365802114 4.170000e-25 126.0
49 TraesCS6A01G406100 chr1D 82.645 121 18 3 677 797 430426019 430425902 1.960000e-18 104.0
50 TraesCS6A01G406100 chr5A 84.127 126 20 0 680 805 440976994 440976869 5.400000e-24 122.0
51 TraesCS6A01G406100 chr5A 83.333 120 20 0 677 796 566169201 566169320 1.170000e-20 111.0
52 TraesCS6A01G406100 chr5A 80.620 129 25 0 677 805 569652977 569653105 2.530000e-17 100.0
53 TraesCS6A01G406100 chr5A 100.000 33 0 0 495 527 432927907 432927875 1.190000e-05 62.1
54 TraesCS6A01G406100 chr3D 83.333 120 20 0 680 799 320826280 320826399 1.170000e-20 111.0
55 TraesCS6A01G406100 chr7A 83.193 119 20 0 687 805 69532528 69532410 4.200000e-20 110.0
56 TraesCS6A01G406100 chr4D 76.818 220 26 11 252 467 359843639 359843837 2.530000e-17 100.0
57 TraesCS6A01G406100 chr1A 82.407 108 16 2 250 354 91127253 91127146 1.520000e-14 91.6
58 TraesCS6A01G406100 chr2D 100.000 28 0 0 1489 1516 595120566 595120539 7.000000e-03 52.8
59 TraesCS6A01G406100 chr2A 100.000 28 0 0 1489 1516 729279551 729279524 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G406100 chr6A 611574953 611578930 3977 True 7347.000000 7347 100.000000 1 3978 1 chr6A.!!$R1 3977
1 TraesCS6A01G406100 chr6A 611663061 611671262 8201 True 2634.333333 5048 93.239000 843 3978 3 chr6A.!!$R2 3135
2 TraesCS6A01G406100 chr6A 611662982 611665003 2021 False 645.000000 656 90.550000 1899 3901 2 chr6A.!!$F4 2002
3 TraesCS6A01G406100 chr6A 611574874 611576895 2021 False 637.000000 651 90.232500 1899 3901 2 chr6A.!!$F3 2002
4 TraesCS6A01G406100 chr6B 709992102 709995024 2922 False 952.333333 1975 87.842667 641 3197 3 chr6B.!!$F3 2556
5 TraesCS6A01G406100 chr6B 709562140 709563007 867 True 935.000000 935 86.239000 2064 2927 1 chr6B.!!$R1 863
6 TraesCS6A01G406100 chr6D 465049496 465054844 5348 False 754.666667 1611 90.875667 1900 3439 3 chr6D.!!$F1 1539
7 TraesCS6A01G406100 chr6D 465049573 465050075 502 True 621.000000 621 88.998000 3474 3978 1 chr6D.!!$R1 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.042581 TCCATAGGCTCCTCACACCA 59.957 55.0 0.00 0.0 0.00 4.17 F
347 348 0.164647 CGGTTTTGCTTCTGCGAGAG 59.835 55.0 0.00 0.0 43.34 3.20 F
608 609 0.250295 TCGTGCCTCTGTTGGAAAGG 60.250 55.0 0.00 0.0 0.00 3.11 F
1775 6415 0.036010 AAAGGATGCTACGCACAGCT 60.036 50.0 7.92 0.0 43.04 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1648 5910 0.895530 TGGCAGAGGAGGTAACGAAG 59.104 55.000 0.00 0.0 46.39 3.79 R
1660 5922 2.288961 GGCAACAATGAATGGCAGAG 57.711 50.000 11.01 0.0 41.38 3.35 R
2043 6754 2.507058 TGCCCATAATCTGAGTCAAGCT 59.493 45.455 0.00 0.0 0.00 3.74 R
3819 13918 1.722034 TTGCCACCTCAGAGACTTCT 58.278 50.000 0.00 0.0 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.924114 CCCCCTTTTTCACTTTTTGGT 57.076 42.857 0.00 0.00 0.00 3.67
25 26 4.229304 CCCCCTTTTTCACTTTTTGGTT 57.771 40.909 0.00 0.00 0.00 3.67
26 27 4.594970 CCCCCTTTTTCACTTTTTGGTTT 58.405 39.130 0.00 0.00 0.00 3.27
27 28 5.013547 CCCCCTTTTTCACTTTTTGGTTTT 58.986 37.500 0.00 0.00 0.00 2.43
28 29 5.478679 CCCCCTTTTTCACTTTTTGGTTTTT 59.521 36.000 0.00 0.00 0.00 1.94
30 31 6.207614 CCCCTTTTTCACTTTTTGGTTTTTCA 59.792 34.615 0.00 0.00 0.00 2.69
31 32 7.093988 CCCCTTTTTCACTTTTTGGTTTTTCAT 60.094 33.333 0.00 0.00 0.00 2.57
32 33 8.303156 CCCTTTTTCACTTTTTGGTTTTTCATT 58.697 29.630 0.00 0.00 0.00 2.57
34 35 9.127006 CTTTTTCACTTTTTGGTTTTTCATTGG 57.873 29.630 0.00 0.00 0.00 3.16
35 36 7.751768 TTTCACTTTTTGGTTTTTCATTGGT 57.248 28.000 0.00 0.00 0.00 3.67
37 38 6.706295 TCACTTTTTGGTTTTTCATTGGTCT 58.294 32.000 0.00 0.00 0.00 3.85
38 39 7.164803 TCACTTTTTGGTTTTTCATTGGTCTT 58.835 30.769 0.00 0.00 0.00 3.01
39 40 7.663493 TCACTTTTTGGTTTTTCATTGGTCTTT 59.337 29.630 0.00 0.00 0.00 2.52
40 41 8.296000 CACTTTTTGGTTTTTCATTGGTCTTTT 58.704 29.630 0.00 0.00 0.00 2.27
91 92 9.962783 AATTAGGTATAAGAGTTACATCGTCAC 57.037 33.333 0.00 0.00 0.00 3.67
92 93 8.743085 TTAGGTATAAGAGTTACATCGTCACT 57.257 34.615 0.00 0.00 0.00 3.41
93 94 9.836864 TTAGGTATAAGAGTTACATCGTCACTA 57.163 33.333 0.00 0.00 0.00 2.74
94 95 8.743085 AGGTATAAGAGTTACATCGTCACTAA 57.257 34.615 0.00 0.00 0.00 2.24
95 96 8.838365 AGGTATAAGAGTTACATCGTCACTAAG 58.162 37.037 0.00 0.00 0.00 2.18
96 97 8.834465 GGTATAAGAGTTACATCGTCACTAAGA 58.166 37.037 0.00 0.00 0.00 2.10
101 102 9.953697 AAGAGTTACATCGTCACTAAGAATATC 57.046 33.333 0.00 0.00 0.00 1.63
102 103 9.121658 AGAGTTACATCGTCACTAAGAATATCA 57.878 33.333 0.00 0.00 0.00 2.15
103 104 9.900710 GAGTTACATCGTCACTAAGAATATCAT 57.099 33.333 0.00 0.00 0.00 2.45
104 105 9.900710 AGTTACATCGTCACTAAGAATATCATC 57.099 33.333 0.00 0.00 0.00 2.92
106 107 7.290110 ACATCGTCACTAAGAATATCATCCA 57.710 36.000 0.00 0.00 0.00 3.41
107 108 7.901029 ACATCGTCACTAAGAATATCATCCAT 58.099 34.615 0.00 0.00 0.00 3.41
110 111 8.056407 TCGTCACTAAGAATATCATCCATAGG 57.944 38.462 0.00 0.00 0.00 2.57
111 112 6.754209 CGTCACTAAGAATATCATCCATAGGC 59.246 42.308 0.00 0.00 0.00 3.93
112 113 7.363355 CGTCACTAAGAATATCATCCATAGGCT 60.363 40.741 0.00 0.00 0.00 4.58
114 115 7.124901 TCACTAAGAATATCATCCATAGGCTCC 59.875 40.741 0.00 0.00 0.00 4.70
115 116 7.125507 CACTAAGAATATCATCCATAGGCTCCT 59.874 40.741 0.00 0.00 0.00 3.69
117 118 5.597758 AGAATATCATCCATAGGCTCCTCA 58.402 41.667 0.00 0.00 0.00 3.86
118 119 5.424895 AGAATATCATCCATAGGCTCCTCAC 59.575 44.000 0.00 0.00 0.00 3.51
119 120 2.477104 TCATCCATAGGCTCCTCACA 57.523 50.000 0.00 0.00 0.00 3.58
120 121 2.042464 TCATCCATAGGCTCCTCACAC 58.958 52.381 0.00 0.00 0.00 3.82
121 122 1.071385 CATCCATAGGCTCCTCACACC 59.929 57.143 0.00 0.00 0.00 4.16
122 123 0.042581 TCCATAGGCTCCTCACACCA 59.957 55.000 0.00 0.00 0.00 4.17
123 124 0.911769 CCATAGGCTCCTCACACCAA 59.088 55.000 0.00 0.00 0.00 3.67
124 125 1.492176 CCATAGGCTCCTCACACCAAT 59.508 52.381 0.00 0.00 0.00 3.16
127 128 2.109126 GGCTCCTCACACCAATCGC 61.109 63.158 0.00 0.00 0.00 4.58
128 129 1.078848 GCTCCTCACACCAATCGCT 60.079 57.895 0.00 0.00 0.00 4.93
129 130 0.175760 GCTCCTCACACCAATCGCTA 59.824 55.000 0.00 0.00 0.00 4.26
131 132 1.478510 CTCCTCACACCAATCGCTAGT 59.521 52.381 0.00 0.00 0.00 2.57
132 133 1.476891 TCCTCACACCAATCGCTAGTC 59.523 52.381 0.00 0.00 0.00 2.59
133 134 1.478510 CCTCACACCAATCGCTAGTCT 59.521 52.381 0.00 0.00 0.00 3.24
134 135 2.093973 CCTCACACCAATCGCTAGTCTT 60.094 50.000 0.00 0.00 0.00 3.01
135 136 3.130516 CCTCACACCAATCGCTAGTCTTA 59.869 47.826 0.00 0.00 0.00 2.10
136 137 4.355437 CTCACACCAATCGCTAGTCTTAG 58.645 47.826 0.00 0.00 0.00 2.18
139 140 4.096532 CACACCAATCGCTAGTCTTAGAGA 59.903 45.833 0.00 0.00 39.54 3.10
141 142 5.361285 ACACCAATCGCTAGTCTTAGAGAAT 59.639 40.000 0.00 0.00 38.85 2.40
143 144 6.758886 CACCAATCGCTAGTCTTAGAGAATTT 59.241 38.462 0.00 0.00 38.85 1.82
144 145 7.278868 CACCAATCGCTAGTCTTAGAGAATTTT 59.721 37.037 0.00 0.00 38.85 1.82
145 146 7.278868 ACCAATCGCTAGTCTTAGAGAATTTTG 59.721 37.037 0.00 0.00 38.85 2.44
146 147 6.836577 ATCGCTAGTCTTAGAGAATTTTGC 57.163 37.500 0.00 0.00 38.85 3.68
147 148 5.967088 TCGCTAGTCTTAGAGAATTTTGCT 58.033 37.500 0.00 0.00 33.52 3.91
148 149 7.096884 TCGCTAGTCTTAGAGAATTTTGCTA 57.903 36.000 0.00 0.00 33.52 3.49
149 150 7.197017 TCGCTAGTCTTAGAGAATTTTGCTAG 58.803 38.462 0.00 0.00 33.52 3.42
150 151 6.074569 CGCTAGTCTTAGAGAATTTTGCTAGC 60.075 42.308 8.10 8.10 42.91 3.42
151 152 6.201997 GCTAGTCTTAGAGAATTTTGCTAGCC 59.798 42.308 13.29 0.00 41.47 3.93
152 153 6.306643 AGTCTTAGAGAATTTTGCTAGCCT 57.693 37.500 13.29 0.00 0.00 4.58
153 154 7.425224 AGTCTTAGAGAATTTTGCTAGCCTA 57.575 36.000 13.29 0.42 0.00 3.93
167 168 2.035530 AGCCTAGCAAGTTCATGAGC 57.964 50.000 0.50 0.50 0.00 4.26
168 169 1.280133 AGCCTAGCAAGTTCATGAGCA 59.720 47.619 12.41 0.00 0.00 4.26
169 170 2.086869 GCCTAGCAAGTTCATGAGCAA 58.913 47.619 12.41 0.00 0.00 3.91
170 171 2.159462 GCCTAGCAAGTTCATGAGCAAC 60.159 50.000 12.41 0.00 0.00 4.17
172 173 2.283145 AGCAAGTTCATGAGCAACCT 57.717 45.000 12.41 1.63 0.00 3.50
173 174 2.590821 AGCAAGTTCATGAGCAACCTT 58.409 42.857 12.41 0.84 0.00 3.50
174 175 3.754965 AGCAAGTTCATGAGCAACCTTA 58.245 40.909 12.41 0.00 0.00 2.69
175 176 4.338879 AGCAAGTTCATGAGCAACCTTAT 58.661 39.130 12.41 0.00 0.00 1.73
176 177 4.768968 AGCAAGTTCATGAGCAACCTTATT 59.231 37.500 12.41 0.00 0.00 1.40
177 178 5.244626 AGCAAGTTCATGAGCAACCTTATTT 59.755 36.000 12.41 0.00 0.00 1.40
201 202 9.677567 TTTGCTTCTCTATTACAATGTTCAAAC 57.322 29.630 0.00 0.00 0.00 2.93
202 203 7.816640 TGCTTCTCTATTACAATGTTCAAACC 58.183 34.615 0.00 0.00 0.00 3.27
204 205 9.162764 GCTTCTCTATTACAATGTTCAAACCTA 57.837 33.333 0.00 0.00 0.00 3.08
213 214 6.597562 ACAATGTTCAAACCTAGTAACAGGA 58.402 36.000 0.00 0.00 39.18 3.86
214 215 7.057894 ACAATGTTCAAACCTAGTAACAGGAA 58.942 34.615 0.00 0.00 39.18 3.36
215 216 7.558444 ACAATGTTCAAACCTAGTAACAGGAAA 59.442 33.333 0.00 0.00 39.18 3.13
216 217 8.410141 CAATGTTCAAACCTAGTAACAGGAAAA 58.590 33.333 0.00 0.00 39.18 2.29
217 218 8.706322 ATGTTCAAACCTAGTAACAGGAAAAT 57.294 30.769 0.00 0.00 39.18 1.82
219 220 7.776030 TGTTCAAACCTAGTAACAGGAAAATCA 59.224 33.333 0.00 0.00 39.18 2.57
220 221 7.739498 TCAAACCTAGTAACAGGAAAATCAC 57.261 36.000 0.00 0.00 39.18 3.06
222 223 7.942341 TCAAACCTAGTAACAGGAAAATCACAT 59.058 33.333 0.00 0.00 39.18 3.21
223 224 7.687941 AACCTAGTAACAGGAAAATCACATG 57.312 36.000 0.00 0.00 39.18 3.21
224 225 5.648092 ACCTAGTAACAGGAAAATCACATGC 59.352 40.000 0.00 0.00 39.18 4.06
226 227 4.406456 AGTAACAGGAAAATCACATGCCA 58.594 39.130 0.00 0.00 0.00 4.92
227 228 5.018809 AGTAACAGGAAAATCACATGCCAT 58.981 37.500 0.00 0.00 0.00 4.40
228 229 6.186957 AGTAACAGGAAAATCACATGCCATA 58.813 36.000 0.00 0.00 0.00 2.74
229 230 5.999205 AACAGGAAAATCACATGCCATAA 57.001 34.783 0.00 0.00 0.00 1.90
230 231 5.999205 ACAGGAAAATCACATGCCATAAA 57.001 34.783 0.00 0.00 0.00 1.40
231 232 6.357579 ACAGGAAAATCACATGCCATAAAA 57.642 33.333 0.00 0.00 0.00 1.52
233 234 8.076910 ACAGGAAAATCACATGCCATAAAATA 57.923 30.769 0.00 0.00 0.00 1.40
234 235 8.199449 ACAGGAAAATCACATGCCATAAAATAG 58.801 33.333 0.00 0.00 0.00 1.73
235 236 7.170320 CAGGAAAATCACATGCCATAAAATAGC 59.830 37.037 0.00 0.00 0.00 2.97
237 238 7.495279 GGAAAATCACATGCCATAAAATAGCAA 59.505 33.333 0.00 0.00 40.46 3.91
238 239 8.967664 AAAATCACATGCCATAAAATAGCAAT 57.032 26.923 0.00 0.00 40.46 3.56
239 240 8.597662 AAATCACATGCCATAAAATAGCAATC 57.402 30.769 0.00 0.00 40.46 2.67
240 241 5.761003 TCACATGCCATAAAATAGCAATCG 58.239 37.500 0.00 0.00 40.46 3.34
241 242 5.299028 TCACATGCCATAAAATAGCAATCGT 59.701 36.000 0.00 0.00 40.46 3.73
242 243 5.978919 CACATGCCATAAAATAGCAATCGTT 59.021 36.000 0.00 0.00 40.46 3.85
243 244 5.978919 ACATGCCATAAAATAGCAATCGTTG 59.021 36.000 0.00 0.00 40.46 4.10
245 246 6.201226 TGCCATAAAATAGCAATCGTTGAA 57.799 33.333 2.51 0.00 32.56 2.69
246 247 6.033341 TGCCATAAAATAGCAATCGTTGAAC 58.967 36.000 2.51 0.00 32.56 3.18
248 249 6.020678 GCCATAAAATAGCAATCGTTGAACAC 60.021 38.462 0.00 0.00 0.00 3.32
260 261 2.155155 CGTTGAACACGTCTTCCTTAGC 59.845 50.000 0.88 0.00 44.49 3.09
262 263 3.746045 TGAACACGTCTTCCTTAGCTT 57.254 42.857 0.88 0.00 0.00 3.74
263 264 4.067972 TGAACACGTCTTCCTTAGCTTT 57.932 40.909 0.88 0.00 0.00 3.51
264 265 4.448210 TGAACACGTCTTCCTTAGCTTTT 58.552 39.130 0.88 0.00 0.00 2.27
265 266 4.272504 TGAACACGTCTTCCTTAGCTTTTG 59.727 41.667 0.88 0.00 0.00 2.44
266 267 3.139077 ACACGTCTTCCTTAGCTTTTGG 58.861 45.455 0.00 0.00 0.00 3.28
267 268 3.181458 ACACGTCTTCCTTAGCTTTTGGA 60.181 43.478 0.00 0.00 0.00 3.53
268 269 3.186613 CACGTCTTCCTTAGCTTTTGGAC 59.813 47.826 0.00 0.00 0.00 4.02
269 270 2.742589 CGTCTTCCTTAGCTTTTGGACC 59.257 50.000 0.00 0.00 0.00 4.46
270 271 3.082548 GTCTTCCTTAGCTTTTGGACCC 58.917 50.000 0.00 0.00 0.00 4.46
272 273 3.139397 TCTTCCTTAGCTTTTGGACCCAA 59.861 43.478 0.00 0.00 0.00 4.12
307 308 3.999229 TTTTTGCGCGAAAAACACATT 57.001 33.333 28.86 0.00 38.38 2.71
308 309 3.999229 TTTTGCGCGAAAAACACATTT 57.001 33.333 20.99 0.00 30.25 2.32
309 310 3.999229 TTTGCGCGAAAAACACATTTT 57.001 33.333 10.54 0.00 43.85 1.82
319 320 5.966636 AAAAACACATTTTTCTCTTCCGC 57.033 34.783 0.00 0.00 43.10 5.54
320 321 2.969443 ACACATTTTTCTCTTCCGCG 57.031 45.000 0.00 0.00 0.00 6.46
321 322 2.489971 ACACATTTTTCTCTTCCGCGA 58.510 42.857 8.23 0.00 0.00 5.87
322 323 2.480419 ACACATTTTTCTCTTCCGCGAG 59.520 45.455 8.23 0.00 0.00 5.03
323 324 2.736721 CACATTTTTCTCTTCCGCGAGA 59.263 45.455 8.23 1.60 38.23 4.04
324 325 2.996621 ACATTTTTCTCTTCCGCGAGAG 59.003 45.455 16.52 16.52 43.63 3.20
325 326 2.080286 TTTTTCTCTTCCGCGAGAGG 57.920 50.000 20.81 11.57 42.73 3.69
326 327 0.389948 TTTTCTCTTCCGCGAGAGGC 60.390 55.000 20.81 0.00 42.73 4.70
328 329 2.202676 CTCTTCCGCGAGAGGCAC 60.203 66.667 8.23 0.00 43.84 5.01
329 330 4.116328 TCTTCCGCGAGAGGCACG 62.116 66.667 8.23 0.00 43.84 5.34
334 335 3.041940 CGCGAGAGGCACGGTTTT 61.042 61.111 0.00 0.00 43.84 2.43
335 336 2.556287 GCGAGAGGCACGGTTTTG 59.444 61.111 0.00 0.00 42.87 2.44
336 337 2.556287 CGAGAGGCACGGTTTTGC 59.444 61.111 0.00 0.00 42.18 3.68
337 338 1.961277 CGAGAGGCACGGTTTTGCT 60.961 57.895 0.00 0.00 42.56 3.91
338 339 1.507141 CGAGAGGCACGGTTTTGCTT 61.507 55.000 0.00 0.00 42.56 3.91
339 340 0.238553 GAGAGGCACGGTTTTGCTTC 59.761 55.000 0.28 0.28 46.31 3.86
342 343 1.661509 GGCACGGTTTTGCTTCTGC 60.662 57.895 0.00 0.00 42.56 4.26
343 344 2.010817 GCACGGTTTTGCTTCTGCG 61.011 57.895 0.00 0.00 43.34 5.18
344 345 1.646540 CACGGTTTTGCTTCTGCGA 59.353 52.632 0.00 0.00 43.34 5.10
345 346 0.384725 CACGGTTTTGCTTCTGCGAG 60.385 55.000 0.00 0.00 43.34 5.03
347 348 0.164647 CGGTTTTGCTTCTGCGAGAG 59.835 55.000 0.00 0.00 43.34 3.20
366 367 4.778415 CACGGACGTGCCTCTCGG 62.778 72.222 12.16 0.00 39.39 4.63
369 370 2.654877 GGACGTGCCTCTCGGAAA 59.345 61.111 0.00 0.00 0.00 3.13
370 371 1.737008 GGACGTGCCTCTCGGAAAC 60.737 63.158 0.00 0.00 0.00 2.78
415 416 5.524971 TTTTTCCTTCTACGAGAGACACA 57.475 39.130 0.00 0.00 32.31 3.72
416 417 5.524971 TTTTCCTTCTACGAGAGACACAA 57.475 39.130 0.00 0.00 32.31 3.33
417 418 5.723672 TTTCCTTCTACGAGAGACACAAT 57.276 39.130 0.00 0.00 32.31 2.71
419 420 5.723672 TCCTTCTACGAGAGACACAATTT 57.276 39.130 0.00 0.00 32.31 1.82
420 421 6.097915 TCCTTCTACGAGAGACACAATTTT 57.902 37.500 0.00 0.00 32.31 1.82
421 422 7.223260 TCCTTCTACGAGAGACACAATTTTA 57.777 36.000 0.00 0.00 32.31 1.52
424 425 7.599245 CCTTCTACGAGAGACACAATTTTACTT 59.401 37.037 0.00 0.00 32.31 2.24
425 426 8.882415 TTCTACGAGAGACACAATTTTACTTT 57.118 30.769 0.00 0.00 32.31 2.66
426 427 8.294341 TCTACGAGAGACACAATTTTACTTTG 57.706 34.615 0.00 0.00 0.00 2.77
427 428 6.300354 ACGAGAGACACAATTTTACTTTGG 57.700 37.500 0.00 0.00 0.00 3.28
428 429 5.147162 CGAGAGACACAATTTTACTTTGGC 58.853 41.667 0.00 0.00 0.00 4.52
431 432 5.049405 AGAGACACAATTTTACTTTGGCGAG 60.049 40.000 0.00 0.00 0.00 5.03
432 433 4.819630 AGACACAATTTTACTTTGGCGAGA 59.180 37.500 0.00 0.00 0.00 4.04
433 434 5.049405 AGACACAATTTTACTTTGGCGAGAG 60.049 40.000 0.00 0.00 0.00 3.20
434 435 4.023193 ACACAATTTTACTTTGGCGAGAGG 60.023 41.667 0.00 0.00 0.00 3.69
455 456 2.347490 GGCCGTGCCTCTCAGAAA 59.653 61.111 7.58 0.00 46.69 2.52
456 457 1.302511 GGCCGTGCCTCTCAGAAAA 60.303 57.895 7.58 0.00 46.69 2.29
457 458 1.578206 GGCCGTGCCTCTCAGAAAAC 61.578 60.000 7.58 0.00 46.69 2.43
459 460 0.319555 CCGTGCCTCTCAGAAAACGA 60.320 55.000 5.28 0.00 33.03 3.85
460 461 1.497991 CGTGCCTCTCAGAAAACGAA 58.502 50.000 0.00 0.00 33.03 3.85
461 462 1.457303 CGTGCCTCTCAGAAAACGAAG 59.543 52.381 0.00 0.00 33.03 3.79
462 463 2.755650 GTGCCTCTCAGAAAACGAAGA 58.244 47.619 0.00 0.00 0.00 2.87
463 464 3.131396 GTGCCTCTCAGAAAACGAAGAA 58.869 45.455 0.00 0.00 0.00 2.52
464 465 3.560068 GTGCCTCTCAGAAAACGAAGAAA 59.440 43.478 0.00 0.00 0.00 2.52
465 466 4.035208 GTGCCTCTCAGAAAACGAAGAAAA 59.965 41.667 0.00 0.00 0.00 2.29
466 467 4.035208 TGCCTCTCAGAAAACGAAGAAAAC 59.965 41.667 0.00 0.00 0.00 2.43
468 469 4.318831 CCTCTCAGAAAACGAAGAAAACCG 60.319 45.833 0.00 0.00 0.00 4.44
470 471 2.034076 CAGAAAACGAAGAAAACCGCG 58.966 47.619 0.00 0.00 0.00 6.46
474 475 2.547913 AACGAAGAAAACCGCGTTTT 57.452 40.000 15.80 15.80 46.51 2.43
502 503 3.121030 CTTTCGCGGGAGGCACAG 61.121 66.667 6.13 0.00 43.84 3.66
522 523 1.289066 CGTGCCTCTCGGAAACAGA 59.711 57.895 0.00 0.00 0.00 3.41
523 524 0.319555 CGTGCCTCTCGGAAACAGAA 60.320 55.000 0.00 0.00 0.00 3.02
524 525 1.872237 CGTGCCTCTCGGAAACAGAAA 60.872 52.381 0.00 0.00 0.00 2.52
526 527 2.616842 GTGCCTCTCGGAAACAGAAAAA 59.383 45.455 0.00 0.00 0.00 1.94
542 543 2.640346 AAAAACCGCGTTTTCTGTGT 57.360 40.000 16.04 0.00 43.67 3.72
543 544 2.640346 AAAACCGCGTTTTCTGTGTT 57.360 40.000 0.95 0.00 41.11 3.32
545 546 2.640346 AACCGCGTTTTCTGTGTTTT 57.360 40.000 4.92 0.00 0.00 2.43
546 547 2.640346 ACCGCGTTTTCTGTGTTTTT 57.360 40.000 4.92 0.00 0.00 1.94
547 548 2.521996 ACCGCGTTTTCTGTGTTTTTC 58.478 42.857 4.92 0.00 0.00 2.29
549 550 2.478879 CCGCGTTTTCTGTGTTTTTCCT 60.479 45.455 4.92 0.00 0.00 3.36
550 551 3.175929 CGCGTTTTCTGTGTTTTTCCTT 58.824 40.909 0.00 0.00 0.00 3.36
551 552 3.239712 CGCGTTTTCTGTGTTTTTCCTTC 59.760 43.478 0.00 0.00 0.00 3.46
554 555 3.430333 TTTCTGTGTTTTTCCTTCCGC 57.570 42.857 0.00 0.00 0.00 5.54
557 558 0.941542 TGTGTTTTTCCTTCCGCGAG 59.058 50.000 8.23 0.00 0.00 5.03
559 560 1.194772 GTGTTTTTCCTTCCGCGAGAG 59.805 52.381 8.23 4.45 0.00 3.20
560 561 0.796927 GTTTTTCCTTCCGCGAGAGG 59.203 55.000 18.22 18.22 0.00 3.69
561 562 0.953960 TTTTTCCTTCCGCGAGAGGC 60.954 55.000 19.15 0.00 38.69 4.70
562 563 2.107041 TTTTCCTTCCGCGAGAGGCA 62.107 55.000 19.15 8.97 43.84 4.75
563 564 1.899437 TTTCCTTCCGCGAGAGGCAT 61.899 55.000 19.15 0.00 43.84 4.40
564 565 1.899437 TTCCTTCCGCGAGAGGCATT 61.899 55.000 19.15 0.00 43.84 3.56
565 566 2.176273 CCTTCCGCGAGAGGCATTG 61.176 63.158 8.23 0.00 43.84 2.82
566 567 1.448540 CTTCCGCGAGAGGCATTGT 60.449 57.895 8.23 0.00 43.84 2.71
567 568 1.003839 TTCCGCGAGAGGCATTGTT 60.004 52.632 8.23 0.00 43.84 2.83
568 569 0.605319 TTCCGCGAGAGGCATTGTTT 60.605 50.000 8.23 0.00 43.84 2.83
569 570 0.605319 TCCGCGAGAGGCATTGTTTT 60.605 50.000 8.23 0.00 43.84 2.43
570 571 0.454957 CCGCGAGAGGCATTGTTTTG 60.455 55.000 8.23 0.00 43.84 2.44
572 573 1.131126 CGCGAGAGGCATTGTTTTGAT 59.869 47.619 0.00 0.00 43.84 2.57
573 574 2.414559 CGCGAGAGGCATTGTTTTGATT 60.415 45.455 0.00 0.00 43.84 2.57
574 575 3.578688 GCGAGAGGCATTGTTTTGATTT 58.421 40.909 0.00 0.00 42.87 2.17
577 578 4.618489 CGAGAGGCATTGTTTTGATTTCAC 59.382 41.667 0.00 0.00 0.00 3.18
578 579 4.549458 AGAGGCATTGTTTTGATTTCACG 58.451 39.130 0.00 0.00 0.00 4.35
580 581 4.549458 AGGCATTGTTTTGATTTCACGAG 58.451 39.130 0.00 0.00 0.00 4.18
581 582 4.278170 AGGCATTGTTTTGATTTCACGAGA 59.722 37.500 0.00 0.00 0.00 4.04
582 583 4.618489 GGCATTGTTTTGATTTCACGAGAG 59.382 41.667 0.00 0.00 0.00 3.20
583 584 4.618489 GCATTGTTTTGATTTCACGAGAGG 59.382 41.667 0.00 0.00 0.00 3.69
585 586 3.210227 TGTTTTGATTTCACGAGAGGCA 58.790 40.909 0.00 0.00 0.00 4.75
586 587 3.003275 TGTTTTGATTTCACGAGAGGCAC 59.997 43.478 0.00 0.00 0.00 5.01
587 588 1.428448 TTGATTTCACGAGAGGCACG 58.572 50.000 0.00 0.00 0.00 5.34
589 590 0.389948 GATTTCACGAGAGGCACGGT 60.390 55.000 0.00 0.00 34.93 4.83
591 592 2.742710 TTTCACGAGAGGCACGGTCG 62.743 60.000 0.00 0.00 42.61 4.79
593 594 4.039357 ACGAGAGGCACGGTCGTG 62.039 66.667 17.87 17.87 46.62 4.35
601 602 2.029073 CACGGTCGTGCCTCTGTT 59.971 61.111 10.59 0.00 39.39 3.16
602 603 2.029073 ACGGTCGTGCCTCTGTTG 59.971 61.111 0.00 0.00 34.25 3.33
605 606 1.070786 GGTCGTGCCTCTGTTGGAA 59.929 57.895 0.00 0.00 0.00 3.53
606 607 0.534203 GGTCGTGCCTCTGTTGGAAA 60.534 55.000 0.00 0.00 0.00 3.13
608 609 0.250295 TCGTGCCTCTGTTGGAAAGG 60.250 55.000 0.00 0.00 0.00 3.11
609 610 1.237285 CGTGCCTCTGTTGGAAAGGG 61.237 60.000 0.00 0.00 0.00 3.95
613 614 2.316108 GCCTCTGTTGGAAAGGGAAAA 58.684 47.619 0.00 0.00 0.00 2.29
614 615 2.698274 GCCTCTGTTGGAAAGGGAAAAA 59.302 45.455 0.00 0.00 0.00 1.94
632 633 2.333701 AAAAGTGCTCCCGGTTCGGT 62.334 55.000 0.00 0.00 46.80 4.69
633 634 2.333701 AAAGTGCTCCCGGTTCGGTT 62.334 55.000 0.00 0.00 46.80 4.44
635 636 1.895231 GTGCTCCCGGTTCGGTTTT 60.895 57.895 0.00 0.00 46.80 2.43
636 637 1.152922 TGCTCCCGGTTCGGTTTTT 60.153 52.632 0.00 0.00 46.80 1.94
637 638 1.167781 TGCTCCCGGTTCGGTTTTTC 61.168 55.000 0.00 0.00 46.80 2.29
638 639 1.859427 GCTCCCGGTTCGGTTTTTCC 61.859 60.000 0.00 0.00 46.80 3.13
685 686 2.605823 CGCCAAAACCTATCAACGCAAA 60.606 45.455 0.00 0.00 0.00 3.68
694 695 4.949856 ACCTATCAACGCAAAGAATCCAAT 59.050 37.500 0.00 0.00 0.00 3.16
695 696 5.163622 ACCTATCAACGCAAAGAATCCAATG 60.164 40.000 0.00 0.00 0.00 2.82
704 705 5.055812 GCAAAGAATCCAATGGTGAAAACA 58.944 37.500 0.00 0.00 0.00 2.83
708 709 6.484364 AGAATCCAATGGTGAAAACAGTTT 57.516 33.333 0.00 0.00 0.00 2.66
779 781 7.661847 AGGATAGACGAAAAATGTGAAAACTCT 59.338 33.333 0.00 0.00 0.00 3.24
792 794 7.310072 TGTGAAAACTCTCAAATTACGACAA 57.690 32.000 0.00 0.00 0.00 3.18
795 797 7.373441 GTGAAAACTCTCAAATTACGACAAGTG 59.627 37.037 0.00 0.00 0.00 3.16
798 800 4.680110 ACTCTCAAATTACGACAAGTGACG 59.320 41.667 1.71 1.71 38.99 4.35
799 801 3.427528 TCTCAAATTACGACAAGTGACGC 59.572 43.478 3.15 0.00 36.73 5.19
800 802 2.154198 TCAAATTACGACAAGTGACGCG 59.846 45.455 3.53 3.53 36.73 6.01
801 803 1.065358 AATTACGACAAGTGACGCGG 58.935 50.000 12.47 0.00 36.73 6.46
803 805 0.935831 TTACGACAAGTGACGCGGTG 60.936 55.000 12.47 2.59 36.73 4.94
804 806 4.059459 CGACAAGTGACGCGGTGC 62.059 66.667 12.47 0.00 0.00 5.01
805 807 3.712881 GACAAGTGACGCGGTGCC 61.713 66.667 12.47 0.00 0.00 5.01
806 808 4.235762 ACAAGTGACGCGGTGCCT 62.236 61.111 12.47 0.00 0.00 4.75
808 810 3.616721 AAGTGACGCGGTGCCTCT 61.617 61.111 12.47 0.00 0.00 3.69
809 811 3.165160 AAGTGACGCGGTGCCTCTT 62.165 57.895 12.47 6.33 0.00 2.85
810 812 3.414700 GTGACGCGGTGCCTCTTG 61.415 66.667 12.47 0.00 0.00 3.02
819 821 2.989639 TGCCTCTTGCCGCACTAT 59.010 55.556 0.00 0.00 40.16 2.12
821 823 1.153369 GCCTCTTGCCGCACTATGA 60.153 57.895 0.00 0.00 0.00 2.15
822 824 1.156645 GCCTCTTGCCGCACTATGAG 61.157 60.000 0.00 0.00 0.00 2.90
825 827 2.133553 CTCTTGCCGCACTATGAGATG 58.866 52.381 0.00 0.00 0.00 2.90
827 829 2.168313 TCTTGCCGCACTATGAGATGAA 59.832 45.455 0.00 0.00 0.00 2.57
1212 5454 0.888619 CAGAGTGGGAGTACGAGCAA 59.111 55.000 0.00 0.00 0.00 3.91
1339 5581 1.514553 GCAGCCAGCAGGAATTTCC 59.485 57.895 7.39 7.39 44.79 3.13
1340 5582 1.953231 GCAGCCAGCAGGAATTTCCC 61.953 60.000 11.92 0.00 44.79 3.97
1341 5583 1.000866 AGCCAGCAGGAATTTCCCC 59.999 57.895 11.92 3.90 37.19 4.81
1342 5584 1.000866 GCCAGCAGGAATTTCCCCT 59.999 57.895 11.92 6.15 37.19 4.79
1343 5585 0.258774 GCCAGCAGGAATTTCCCCTA 59.741 55.000 11.92 0.00 37.19 3.53
1344 5586 1.752084 GCCAGCAGGAATTTCCCCTAG 60.752 57.143 11.92 3.73 37.19 3.02
1393 5635 8.187913 AGATTAGATTAGATGTAGCAAGCAGA 57.812 34.615 0.00 0.00 0.00 4.26
1619 5881 2.635229 CTTCGACCGCTCCAGGGATG 62.635 65.000 0.00 0.00 35.02 3.51
1630 5892 0.251297 CCAGGGATGACTGCCAAACA 60.251 55.000 0.00 0.00 37.16 2.83
1662 5924 4.268797 AGGTTTTCTTCGTTACCTCCTC 57.731 45.455 0.00 0.00 36.25 3.71
1743 6379 6.544038 TGATGTTGGTATTATCTCAATGCG 57.456 37.500 0.00 0.00 0.00 4.73
1764 6404 3.914364 CGTTTCAACTGCTAAAAGGATGC 59.086 43.478 0.00 0.00 0.00 3.91
1768 6408 3.932710 TCAACTGCTAAAAGGATGCTACG 59.067 43.478 0.00 0.00 0.00 3.51
1772 6412 2.006888 GCTAAAAGGATGCTACGCACA 58.993 47.619 0.00 0.00 43.04 4.57
1773 6413 2.030946 GCTAAAAGGATGCTACGCACAG 59.969 50.000 0.00 0.00 43.04 3.66
1774 6414 0.804989 AAAAGGATGCTACGCACAGC 59.195 50.000 0.00 0.00 43.04 4.40
1775 6415 0.036010 AAAGGATGCTACGCACAGCT 60.036 50.000 7.92 0.00 43.04 4.24
1776 6416 0.824109 AAGGATGCTACGCACAGCTA 59.176 50.000 7.92 0.00 43.04 3.32
1777 6417 0.387202 AGGATGCTACGCACAGCTAG 59.613 55.000 7.92 0.00 43.04 3.42
1778 6418 0.385751 GGATGCTACGCACAGCTAGA 59.614 55.000 7.92 0.00 43.04 2.43
1798 6452 5.972107 AGAAGAATGATGTTGGTTCCTTG 57.028 39.130 0.00 0.00 0.00 3.61
1884 6543 2.355108 GCTGTCTGCTCACCCAGAATTA 60.355 50.000 0.00 0.00 42.98 1.40
1889 6548 1.707989 TGCTCACCCAGAATTAACCCA 59.292 47.619 0.00 0.00 0.00 4.51
1927 6610 8.321353 TGTCCAGTGTGATGAACTTAATTATCT 58.679 33.333 0.00 0.00 0.00 1.98
1928 6611 9.167311 GTCCAGTGTGATGAACTTAATTATCTT 57.833 33.333 0.00 0.00 0.00 2.40
1949 6632 6.552008 TCTTATTGGACCATTCTTTTCAGGT 58.448 36.000 0.00 0.00 37.00 4.00
2012 6711 2.245096 CACTAGCAAGCGCATTTGTTC 58.755 47.619 11.47 0.00 42.27 3.18
2043 6754 0.946528 CAAGTGTGTGCTGCTTGCTA 59.053 50.000 0.00 0.00 43.37 3.49
2055 6766 2.376808 GCTTGCTAGCTTGACTCAGA 57.623 50.000 17.23 0.00 44.27 3.27
2114 6825 1.267121 GGTTGCCACCTCAGAGACTA 58.733 55.000 0.00 0.00 40.44 2.59
2115 6826 1.623811 GGTTGCCACCTCAGAGACTAA 59.376 52.381 0.00 0.00 40.44 2.24
2317 7034 1.236616 TGCAGGATTCGTGCTTGGTG 61.237 55.000 26.29 0.00 44.26 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.924114 ACCAAAAAGTGAAAAAGGGGG 57.076 42.857 0.00 0.00 0.00 5.40
5 6 6.207614 TGAAAAACCAAAAAGTGAAAAAGGGG 59.792 34.615 0.00 0.00 0.00 4.79
7 8 9.127006 CAATGAAAAACCAAAAAGTGAAAAAGG 57.873 29.630 0.00 0.00 0.00 3.11
8 9 9.127006 CCAATGAAAAACCAAAAAGTGAAAAAG 57.873 29.630 0.00 0.00 0.00 2.27
9 10 8.633561 ACCAATGAAAAACCAAAAAGTGAAAAA 58.366 25.926 0.00 0.00 0.00 1.94
10 11 8.171164 ACCAATGAAAAACCAAAAAGTGAAAA 57.829 26.923 0.00 0.00 0.00 2.29
11 12 7.663493 AGACCAATGAAAAACCAAAAAGTGAAA 59.337 29.630 0.00 0.00 0.00 2.69
12 13 7.164803 AGACCAATGAAAAACCAAAAAGTGAA 58.835 30.769 0.00 0.00 0.00 3.18
13 14 6.706295 AGACCAATGAAAAACCAAAAAGTGA 58.294 32.000 0.00 0.00 0.00 3.41
14 15 6.983474 AGACCAATGAAAAACCAAAAAGTG 57.017 33.333 0.00 0.00 0.00 3.16
66 67 9.352191 AGTGACGATGTAACTCTTATACCTAAT 57.648 33.333 0.00 0.00 0.00 1.73
67 68 8.743085 AGTGACGATGTAACTCTTATACCTAA 57.257 34.615 0.00 0.00 0.00 2.69
68 69 9.836864 TTAGTGACGATGTAACTCTTATACCTA 57.163 33.333 0.00 0.00 28.94 3.08
69 70 8.743085 TTAGTGACGATGTAACTCTTATACCT 57.257 34.615 0.00 0.00 28.94 3.08
75 76 9.953697 GATATTCTTAGTGACGATGTAACTCTT 57.046 33.333 0.00 0.00 28.94 2.85
76 77 9.121658 TGATATTCTTAGTGACGATGTAACTCT 57.878 33.333 0.00 0.00 28.94 3.24
77 78 9.900710 ATGATATTCTTAGTGACGATGTAACTC 57.099 33.333 0.00 0.00 28.94 3.01
78 79 9.900710 GATGATATTCTTAGTGACGATGTAACT 57.099 33.333 0.00 0.00 31.33 2.24
80 81 8.856103 TGGATGATATTCTTAGTGACGATGTAA 58.144 33.333 0.00 0.00 0.00 2.41
81 82 8.404107 TGGATGATATTCTTAGTGACGATGTA 57.596 34.615 0.00 0.00 0.00 2.29
82 83 7.290110 TGGATGATATTCTTAGTGACGATGT 57.710 36.000 0.00 0.00 0.00 3.06
83 84 9.513727 CTATGGATGATATTCTTAGTGACGATG 57.486 37.037 0.00 0.00 0.00 3.84
84 85 8.690884 CCTATGGATGATATTCTTAGTGACGAT 58.309 37.037 0.00 0.00 0.00 3.73
85 86 7.363007 GCCTATGGATGATATTCTTAGTGACGA 60.363 40.741 0.00 0.00 0.00 4.20
86 87 6.754209 GCCTATGGATGATATTCTTAGTGACG 59.246 42.308 0.00 0.00 0.00 4.35
88 89 7.124901 GGAGCCTATGGATGATATTCTTAGTGA 59.875 40.741 0.00 0.00 0.00 3.41
89 90 7.125507 AGGAGCCTATGGATGATATTCTTAGTG 59.874 40.741 0.00 0.00 0.00 2.74
90 91 7.195474 AGGAGCCTATGGATGATATTCTTAGT 58.805 38.462 0.00 0.00 0.00 2.24
91 92 7.344093 TGAGGAGCCTATGGATGATATTCTTAG 59.656 40.741 0.00 0.00 0.00 2.18
92 93 7.124901 GTGAGGAGCCTATGGATGATATTCTTA 59.875 40.741 0.00 0.00 0.00 2.10
93 94 6.028131 TGAGGAGCCTATGGATGATATTCTT 58.972 40.000 0.00 0.00 0.00 2.52
94 95 5.424895 GTGAGGAGCCTATGGATGATATTCT 59.575 44.000 0.00 0.00 0.00 2.40
95 96 5.188555 TGTGAGGAGCCTATGGATGATATTC 59.811 44.000 0.00 0.00 0.00 1.75
96 97 5.046014 GTGTGAGGAGCCTATGGATGATATT 60.046 44.000 0.00 0.00 0.00 1.28
97 98 4.469227 GTGTGAGGAGCCTATGGATGATAT 59.531 45.833 0.00 0.00 0.00 1.63
98 99 3.834813 GTGTGAGGAGCCTATGGATGATA 59.165 47.826 0.00 0.00 0.00 2.15
99 100 2.636893 GTGTGAGGAGCCTATGGATGAT 59.363 50.000 0.00 0.00 0.00 2.45
100 101 2.042464 GTGTGAGGAGCCTATGGATGA 58.958 52.381 0.00 0.00 0.00 2.92
101 102 1.071385 GGTGTGAGGAGCCTATGGATG 59.929 57.143 0.00 0.00 0.00 3.51
102 103 1.344393 TGGTGTGAGGAGCCTATGGAT 60.344 52.381 0.00 0.00 0.00 3.41
103 104 0.042581 TGGTGTGAGGAGCCTATGGA 59.957 55.000 0.00 0.00 0.00 3.41
104 105 0.911769 TTGGTGTGAGGAGCCTATGG 59.088 55.000 0.00 0.00 0.00 2.74
106 107 1.414181 CGATTGGTGTGAGGAGCCTAT 59.586 52.381 0.00 0.00 0.00 2.57
107 108 0.824109 CGATTGGTGTGAGGAGCCTA 59.176 55.000 0.00 0.00 0.00 3.93
110 111 0.175760 TAGCGATTGGTGTGAGGAGC 59.824 55.000 0.00 0.00 0.00 4.70
111 112 1.478510 ACTAGCGATTGGTGTGAGGAG 59.521 52.381 0.00 0.00 0.00 3.69
112 113 1.476891 GACTAGCGATTGGTGTGAGGA 59.523 52.381 0.00 0.00 0.00 3.71
114 115 2.949451 AGACTAGCGATTGGTGTGAG 57.051 50.000 0.00 0.00 0.00 3.51
115 116 4.014406 TCTAAGACTAGCGATTGGTGTGA 58.986 43.478 0.00 0.00 0.00 3.58
117 118 4.270834 TCTCTAAGACTAGCGATTGGTGT 58.729 43.478 0.00 0.00 0.00 4.16
118 119 4.902443 TCTCTAAGACTAGCGATTGGTG 57.098 45.455 0.00 0.00 0.00 4.17
119 120 6.472686 AATTCTCTAAGACTAGCGATTGGT 57.527 37.500 0.00 0.00 0.00 3.67
120 121 7.625553 CAAAATTCTCTAAGACTAGCGATTGG 58.374 38.462 0.00 0.00 0.00 3.16
121 122 7.010923 AGCAAAATTCTCTAAGACTAGCGATTG 59.989 37.037 0.00 0.00 0.00 2.67
122 123 7.044798 AGCAAAATTCTCTAAGACTAGCGATT 58.955 34.615 0.00 0.00 0.00 3.34
123 124 6.578023 AGCAAAATTCTCTAAGACTAGCGAT 58.422 36.000 0.00 0.00 0.00 4.58
124 125 5.967088 AGCAAAATTCTCTAAGACTAGCGA 58.033 37.500 0.00 0.00 0.00 4.93
127 128 7.496747 AGGCTAGCAAAATTCTCTAAGACTAG 58.503 38.462 18.24 0.00 0.00 2.57
128 129 7.425224 AGGCTAGCAAAATTCTCTAAGACTA 57.575 36.000 18.24 0.00 0.00 2.59
129 130 6.306643 AGGCTAGCAAAATTCTCTAAGACT 57.693 37.500 18.24 0.00 0.00 3.24
146 147 3.129871 GCTCATGAACTTGCTAGGCTAG 58.870 50.000 17.33 17.33 37.42 3.42
147 148 2.501316 TGCTCATGAACTTGCTAGGCTA 59.499 45.455 0.00 0.00 0.00 3.93
148 149 1.280133 TGCTCATGAACTTGCTAGGCT 59.720 47.619 0.00 0.00 0.00 4.58
149 150 1.742761 TGCTCATGAACTTGCTAGGC 58.257 50.000 0.00 0.00 0.00 3.93
150 151 2.421424 GGTTGCTCATGAACTTGCTAGG 59.579 50.000 0.00 0.00 0.00 3.02
151 152 3.341823 AGGTTGCTCATGAACTTGCTAG 58.658 45.455 0.00 0.00 0.00 3.42
152 153 3.423539 AGGTTGCTCATGAACTTGCTA 57.576 42.857 0.00 0.00 0.00 3.49
153 154 2.283145 AGGTTGCTCATGAACTTGCT 57.717 45.000 0.00 0.00 0.00 3.91
155 156 6.939551 CAAATAAGGTTGCTCATGAACTTG 57.060 37.500 0.00 0.00 0.00 3.16
169 170 9.686683 ACATTGTAATAGAGAAGCAAATAAGGT 57.313 29.630 0.00 0.00 0.00 3.50
175 176 9.677567 GTTTGAACATTGTAATAGAGAAGCAAA 57.322 29.630 0.00 0.00 0.00 3.68
176 177 8.296713 GGTTTGAACATTGTAATAGAGAAGCAA 58.703 33.333 0.00 0.00 0.00 3.91
177 178 7.665559 AGGTTTGAACATTGTAATAGAGAAGCA 59.334 33.333 0.00 0.00 0.00 3.91
186 187 9.010029 CCTGTTACTAGGTTTGAACATTGTAAT 57.990 33.333 14.79 0.00 40.69 1.89
189 190 6.597562 TCCTGTTACTAGGTTTGAACATTGT 58.402 36.000 0.00 1.83 38.99 2.71
191 192 8.528044 TTTTCCTGTTACTAGGTTTGAACATT 57.472 30.769 0.00 0.00 38.99 2.71
192 193 8.706322 ATTTTCCTGTTACTAGGTTTGAACAT 57.294 30.769 0.00 0.00 38.99 2.71
193 194 7.776030 TGATTTTCCTGTTACTAGGTTTGAACA 59.224 33.333 0.00 0.00 38.99 3.18
194 195 8.074370 GTGATTTTCCTGTTACTAGGTTTGAAC 58.926 37.037 0.00 0.00 38.99 3.18
196 197 7.284074 TGTGATTTTCCTGTTACTAGGTTTGA 58.716 34.615 0.00 0.00 38.99 2.69
197 198 7.504924 TGTGATTTTCCTGTTACTAGGTTTG 57.495 36.000 0.00 0.00 38.99 2.93
198 199 7.309194 GCATGTGATTTTCCTGTTACTAGGTTT 60.309 37.037 0.00 0.00 38.99 3.27
199 200 6.151144 GCATGTGATTTTCCTGTTACTAGGTT 59.849 38.462 0.00 0.00 38.99 3.50
200 201 5.648092 GCATGTGATTTTCCTGTTACTAGGT 59.352 40.000 0.00 0.00 38.99 3.08
201 202 5.066505 GGCATGTGATTTTCCTGTTACTAGG 59.933 44.000 0.00 0.00 39.29 3.02
202 203 5.647658 TGGCATGTGATTTTCCTGTTACTAG 59.352 40.000 0.00 0.00 0.00 2.57
204 205 4.406456 TGGCATGTGATTTTCCTGTTACT 58.594 39.130 0.00 0.00 0.00 2.24
205 206 4.782019 TGGCATGTGATTTTCCTGTTAC 57.218 40.909 0.00 0.00 0.00 2.50
206 207 7.473735 TTTATGGCATGTGATTTTCCTGTTA 57.526 32.000 10.98 0.00 0.00 2.41
207 208 5.999205 TTATGGCATGTGATTTTCCTGTT 57.001 34.783 10.98 0.00 0.00 3.16
209 210 7.170320 GCTATTTTATGGCATGTGATTTTCCTG 59.830 37.037 10.98 0.00 36.68 3.86
210 211 7.147689 TGCTATTTTATGGCATGTGATTTTCCT 60.148 33.333 10.98 0.00 42.07 3.36
211 212 6.985645 TGCTATTTTATGGCATGTGATTTTCC 59.014 34.615 10.98 0.00 42.07 3.13
213 214 8.967664 ATTGCTATTTTATGGCATGTGATTTT 57.032 26.923 10.98 0.00 46.32 1.82
214 215 7.383029 CGATTGCTATTTTATGGCATGTGATTT 59.617 33.333 10.98 0.00 46.32 2.17
215 216 6.864685 CGATTGCTATTTTATGGCATGTGATT 59.135 34.615 10.98 0.00 46.32 2.57
216 217 6.016024 ACGATTGCTATTTTATGGCATGTGAT 60.016 34.615 10.98 3.55 46.32 3.06
217 218 5.299028 ACGATTGCTATTTTATGGCATGTGA 59.701 36.000 10.98 0.00 46.32 3.58
219 220 5.772825 ACGATTGCTATTTTATGGCATGT 57.227 34.783 10.98 0.00 46.32 3.21
220 221 6.207928 TCAACGATTGCTATTTTATGGCATG 58.792 36.000 10.98 0.00 46.32 4.06
222 223 5.826601 TCAACGATTGCTATTTTATGGCA 57.173 34.783 0.00 0.00 45.39 4.92
223 224 6.020678 GTGTTCAACGATTGCTATTTTATGGC 60.021 38.462 0.00 0.00 37.27 4.40
224 225 7.436536 GTGTTCAACGATTGCTATTTTATGG 57.563 36.000 0.00 0.00 0.00 2.74
240 241 3.391049 AGCTAAGGAAGACGTGTTCAAC 58.609 45.455 24.76 10.20 0.00 3.18
241 242 3.746045 AGCTAAGGAAGACGTGTTCAA 57.254 42.857 24.76 10.25 0.00 2.69
242 243 3.746045 AAGCTAAGGAAGACGTGTTCA 57.254 42.857 24.76 5.85 0.00 3.18
243 244 4.319549 CCAAAAGCTAAGGAAGACGTGTTC 60.320 45.833 16.63 16.63 0.00 3.18
245 246 3.139077 CCAAAAGCTAAGGAAGACGTGT 58.861 45.455 0.00 0.00 0.00 4.49
246 247 3.186613 GTCCAAAAGCTAAGGAAGACGTG 59.813 47.826 0.00 0.00 32.30 4.49
248 249 2.742589 GGTCCAAAAGCTAAGGAAGACG 59.257 50.000 3.53 0.00 32.30 4.18
250 251 2.714250 TGGGTCCAAAAGCTAAGGAAGA 59.286 45.455 3.53 0.00 32.30 2.87
251 252 3.154827 TGGGTCCAAAAGCTAAGGAAG 57.845 47.619 3.53 0.00 32.30 3.46
252 253 3.603965 TTGGGTCCAAAAGCTAAGGAA 57.396 42.857 0.00 0.00 32.30 3.36
253 254 3.603965 TTTGGGTCCAAAAGCTAAGGA 57.396 42.857 12.28 0.00 42.16 3.36
287 288 3.999229 AATGTGTTTTTCGCGCAAAAA 57.001 33.333 17.85 18.31 40.93 1.94
288 289 3.999229 AAATGTGTTTTTCGCGCAAAA 57.001 33.333 12.58 12.58 31.73 2.44
289 290 3.999229 AAAATGTGTTTTTCGCGCAAA 57.001 33.333 8.75 0.00 33.89 3.68
290 291 3.999229 AAAAATGTGTTTTTCGCGCAA 57.001 33.333 8.75 0.00 42.32 4.85
299 300 3.314080 TCGCGGAAGAGAAAAATGTGTTT 59.686 39.130 6.13 0.00 36.84 2.83
300 301 2.875933 TCGCGGAAGAGAAAAATGTGTT 59.124 40.909 6.13 0.00 36.84 3.32
301 302 2.480419 CTCGCGGAAGAGAAAAATGTGT 59.520 45.455 6.13 0.00 40.10 3.72
303 304 2.996621 CTCTCGCGGAAGAGAAAAATGT 59.003 45.455 17.47 0.00 45.52 2.71
305 306 2.622436 CCTCTCGCGGAAGAGAAAAAT 58.378 47.619 22.48 0.00 45.52 1.82
307 308 0.389948 GCCTCTCGCGGAAGAGAAAA 60.390 55.000 22.48 0.00 45.52 2.29
308 309 1.215647 GCCTCTCGCGGAAGAGAAA 59.784 57.895 22.48 0.00 45.52 2.52
309 310 1.977009 TGCCTCTCGCGGAAGAGAA 60.977 57.895 22.48 10.22 45.52 2.87
310 311 2.361230 TGCCTCTCGCGGAAGAGA 60.361 61.111 22.48 10.31 44.67 3.10
311 312 2.202676 GTGCCTCTCGCGGAAGAG 60.203 66.667 15.87 15.87 42.09 2.85
312 313 4.116328 CGTGCCTCTCGCGGAAGA 62.116 66.667 6.13 0.90 44.36 2.87
319 320 1.507141 AAGCAAAACCGTGCCTCTCG 61.507 55.000 0.00 0.00 46.14 4.04
320 321 0.238553 GAAGCAAAACCGTGCCTCTC 59.761 55.000 0.00 0.00 46.14 3.20
321 322 0.179018 AGAAGCAAAACCGTGCCTCT 60.179 50.000 0.00 0.00 46.14 3.69
322 323 0.040067 CAGAAGCAAAACCGTGCCTC 60.040 55.000 0.00 0.00 46.14 4.70
323 324 2.032981 CAGAAGCAAAACCGTGCCT 58.967 52.632 0.00 0.00 46.14 4.75
324 325 1.661509 GCAGAAGCAAAACCGTGCC 60.662 57.895 0.00 0.00 46.14 5.01
325 326 2.010817 CGCAGAAGCAAAACCGTGC 61.011 57.895 0.00 0.00 45.28 5.34
326 327 0.384725 CTCGCAGAAGCAAAACCGTG 60.385 55.000 0.00 0.00 42.27 4.94
328 329 0.164647 CTCTCGCAGAAGCAAAACCG 59.835 55.000 0.00 0.00 42.27 4.44
329 330 0.519077 CCTCTCGCAGAAGCAAAACC 59.481 55.000 0.00 0.00 42.27 3.27
330 331 0.110010 GCCTCTCGCAGAAGCAAAAC 60.110 55.000 2.95 0.00 42.27 2.43
332 333 1.071299 TGCCTCTCGCAGAAGCAAA 59.929 52.632 6.89 0.00 44.64 3.68
333 334 2.743060 TGCCTCTCGCAGAAGCAA 59.257 55.556 6.89 0.00 44.64 3.91
394 395 5.524971 TTGTGTCTCTCGTAGAAGGAAAA 57.475 39.130 0.00 0.00 35.47 2.29
395 396 5.723672 ATTGTGTCTCTCGTAGAAGGAAA 57.276 39.130 0.00 0.00 35.47 3.13
396 397 5.723672 AATTGTGTCTCTCGTAGAAGGAA 57.276 39.130 0.00 0.00 35.47 3.36
397 398 5.723672 AAATTGTGTCTCTCGTAGAAGGA 57.276 39.130 0.00 0.00 35.47 3.36
398 399 7.091443 AGTAAAATTGTGTCTCTCGTAGAAGG 58.909 38.462 0.00 0.00 35.47 3.46
399 400 8.522178 AAGTAAAATTGTGTCTCTCGTAGAAG 57.478 34.615 0.00 0.00 35.47 2.85
400 401 8.761497 CAAAGTAAAATTGTGTCTCTCGTAGAA 58.239 33.333 0.00 0.00 35.47 2.10
401 402 7.384115 CCAAAGTAAAATTGTGTCTCTCGTAGA 59.616 37.037 0.00 0.00 0.00 2.59
402 403 7.510630 CCAAAGTAAAATTGTGTCTCTCGTAG 58.489 38.462 0.00 0.00 0.00 3.51
403 404 6.073440 GCCAAAGTAAAATTGTGTCTCTCGTA 60.073 38.462 0.00 0.00 0.00 3.43
404 405 5.277828 GCCAAAGTAAAATTGTGTCTCTCGT 60.278 40.000 0.00 0.00 0.00 4.18
405 406 5.147162 GCCAAAGTAAAATTGTGTCTCTCG 58.853 41.667 0.00 0.00 0.00 4.04
406 407 5.049680 TCGCCAAAGTAAAATTGTGTCTCTC 60.050 40.000 0.00 0.00 0.00 3.20
407 408 4.819630 TCGCCAAAGTAAAATTGTGTCTCT 59.180 37.500 0.00 0.00 0.00 3.10
408 409 5.049680 TCTCGCCAAAGTAAAATTGTGTCTC 60.050 40.000 0.00 0.00 0.00 3.36
409 410 4.819630 TCTCGCCAAAGTAAAATTGTGTCT 59.180 37.500 0.00 0.00 0.00 3.41
410 411 5.103290 TCTCGCCAAAGTAAAATTGTGTC 57.897 39.130 0.00 0.00 0.00 3.67
411 412 4.023193 CCTCTCGCCAAAGTAAAATTGTGT 60.023 41.667 0.00 0.00 0.00 3.72
412 413 4.475944 CCTCTCGCCAAAGTAAAATTGTG 58.524 43.478 0.00 0.00 0.00 3.33
413 414 3.057526 GCCTCTCGCCAAAGTAAAATTGT 60.058 43.478 0.00 0.00 0.00 2.71
415 416 3.153919 TGCCTCTCGCCAAAGTAAAATT 58.846 40.909 0.00 0.00 36.24 1.82
416 417 2.790433 TGCCTCTCGCCAAAGTAAAAT 58.210 42.857 0.00 0.00 36.24 1.82
417 418 2.264005 TGCCTCTCGCCAAAGTAAAA 57.736 45.000 0.00 0.00 36.24 1.52
419 420 1.678728 CCATGCCTCTCGCCAAAGTAA 60.679 52.381 0.00 0.00 36.24 2.24
420 421 0.107703 CCATGCCTCTCGCCAAAGTA 60.108 55.000 0.00 0.00 36.24 2.24
421 422 1.377725 CCATGCCTCTCGCCAAAGT 60.378 57.895 0.00 0.00 36.24 2.66
424 425 4.802051 GGCCATGCCTCTCGCCAA 62.802 66.667 0.00 0.00 46.69 4.52
439 440 1.869690 GTTTTCTGAGAGGCACGGC 59.130 57.895 0.00 0.00 0.00 5.68
440 441 0.319555 TCGTTTTCTGAGAGGCACGG 60.320 55.000 9.34 0.00 0.00 4.94
442 443 2.755650 TCTTCGTTTTCTGAGAGGCAC 58.244 47.619 0.00 0.00 0.00 5.01
443 444 3.469008 TTCTTCGTTTTCTGAGAGGCA 57.531 42.857 0.00 0.00 0.00 4.75
445 446 4.318831 CGGTTTTCTTCGTTTTCTGAGAGG 60.319 45.833 0.00 0.00 0.00 3.69
446 447 4.762809 CGGTTTTCTTCGTTTTCTGAGAG 58.237 43.478 0.00 0.00 0.00 3.20
447 448 3.001939 GCGGTTTTCTTCGTTTTCTGAGA 59.998 43.478 0.00 0.00 0.00 3.27
448 449 3.289076 GCGGTTTTCTTCGTTTTCTGAG 58.711 45.455 0.00 0.00 0.00 3.35
449 450 2.285950 CGCGGTTTTCTTCGTTTTCTGA 60.286 45.455 0.00 0.00 0.00 3.27
450 451 2.034076 CGCGGTTTTCTTCGTTTTCTG 58.966 47.619 0.00 0.00 0.00 3.02
452 453 2.095384 ACGCGGTTTTCTTCGTTTTC 57.905 45.000 12.47 0.00 0.00 2.29
453 454 2.547913 AACGCGGTTTTCTTCGTTTT 57.452 40.000 12.47 0.00 41.61 2.43
454 455 2.547913 AAACGCGGTTTTCTTCGTTT 57.452 40.000 12.47 5.88 46.20 3.60
455 456 2.547913 AAAACGCGGTTTTCTTCGTT 57.452 40.000 18.06 0.00 41.11 3.85
523 524 2.640346 ACACAGAAAACGCGGTTTTT 57.360 40.000 24.86 16.07 44.33 1.94
524 525 2.640346 AACACAGAAAACGCGGTTTT 57.360 40.000 24.86 19.48 46.51 2.43
526 527 2.640346 AAAACACAGAAAACGCGGTT 57.360 40.000 12.47 7.61 0.00 4.44
527 528 2.521996 GAAAAACACAGAAAACGCGGT 58.478 42.857 12.47 0.00 0.00 5.68
529 530 2.792749 AGGAAAAACACAGAAAACGCG 58.207 42.857 3.53 3.53 0.00 6.01
530 531 3.550275 GGAAGGAAAAACACAGAAAACGC 59.450 43.478 0.00 0.00 0.00 4.84
531 532 3.789224 CGGAAGGAAAAACACAGAAAACG 59.211 43.478 0.00 0.00 0.00 3.60
532 533 3.550275 GCGGAAGGAAAAACACAGAAAAC 59.450 43.478 0.00 0.00 0.00 2.43
533 534 3.732471 CGCGGAAGGAAAAACACAGAAAA 60.732 43.478 0.00 0.00 0.00 2.29
535 536 1.332375 CGCGGAAGGAAAAACACAGAA 59.668 47.619 0.00 0.00 0.00 3.02
536 537 0.941542 CGCGGAAGGAAAAACACAGA 59.058 50.000 0.00 0.00 0.00 3.41
537 538 0.941542 TCGCGGAAGGAAAAACACAG 59.058 50.000 6.13 0.00 0.00 3.66
538 539 0.941542 CTCGCGGAAGGAAAAACACA 59.058 50.000 6.13 0.00 0.00 3.72
539 540 1.194772 CTCTCGCGGAAGGAAAAACAC 59.805 52.381 6.13 0.00 0.00 3.32
540 541 1.508632 CTCTCGCGGAAGGAAAAACA 58.491 50.000 6.13 0.00 0.00 2.83
541 542 0.796927 CCTCTCGCGGAAGGAAAAAC 59.203 55.000 19.22 0.00 0.00 2.43
542 543 0.953960 GCCTCTCGCGGAAGGAAAAA 60.954 55.000 25.65 0.00 0.00 1.94
543 544 1.375523 GCCTCTCGCGGAAGGAAAA 60.376 57.895 25.65 0.00 0.00 2.29
545 546 1.899437 AATGCCTCTCGCGGAAGGAA 61.899 55.000 25.65 18.60 42.08 3.36
546 547 2.359169 AATGCCTCTCGCGGAAGGA 61.359 57.895 25.65 14.06 42.08 3.36
547 548 2.176273 CAATGCCTCTCGCGGAAGG 61.176 63.158 19.53 19.53 42.08 3.46
549 550 0.605319 AAACAATGCCTCTCGCGGAA 60.605 50.000 6.13 0.00 42.08 4.30
550 551 0.605319 AAAACAATGCCTCTCGCGGA 60.605 50.000 6.13 1.01 42.08 5.54
551 552 0.454957 CAAAACAATGCCTCTCGCGG 60.455 55.000 6.13 0.00 42.08 6.46
554 555 4.618489 GTGAAATCAAAACAATGCCTCTCG 59.382 41.667 0.00 0.00 0.00 4.04
557 558 4.545610 TCGTGAAATCAAAACAATGCCTC 58.454 39.130 0.00 0.00 0.00 4.70
559 560 4.545610 TCTCGTGAAATCAAAACAATGCC 58.454 39.130 0.00 0.00 0.00 4.40
560 561 4.618489 CCTCTCGTGAAATCAAAACAATGC 59.382 41.667 0.00 0.00 0.00 3.56
561 562 4.618489 GCCTCTCGTGAAATCAAAACAATG 59.382 41.667 0.00 0.00 0.00 2.82
562 563 4.278170 TGCCTCTCGTGAAATCAAAACAAT 59.722 37.500 0.00 0.00 0.00 2.71
563 564 3.629855 TGCCTCTCGTGAAATCAAAACAA 59.370 39.130 0.00 0.00 0.00 2.83
564 565 3.003275 GTGCCTCTCGTGAAATCAAAACA 59.997 43.478 0.00 0.00 0.00 2.83
565 566 3.555518 GTGCCTCTCGTGAAATCAAAAC 58.444 45.455 0.00 0.00 0.00 2.43
566 567 2.223144 CGTGCCTCTCGTGAAATCAAAA 59.777 45.455 0.00 0.00 0.00 2.44
567 568 1.798223 CGTGCCTCTCGTGAAATCAAA 59.202 47.619 0.00 0.00 0.00 2.69
568 569 1.428448 CGTGCCTCTCGTGAAATCAA 58.572 50.000 0.00 0.00 0.00 2.57
569 570 0.389817 CCGTGCCTCTCGTGAAATCA 60.390 55.000 0.00 0.00 0.00 2.57
570 571 0.389948 ACCGTGCCTCTCGTGAAATC 60.390 55.000 0.00 0.00 0.00 2.17
572 573 1.006571 GACCGTGCCTCTCGTGAAA 60.007 57.895 0.00 0.00 0.00 2.69
573 574 2.649034 GACCGTGCCTCTCGTGAA 59.351 61.111 0.00 0.00 0.00 3.18
574 575 3.733960 CGACCGTGCCTCTCGTGA 61.734 66.667 0.00 0.00 0.00 4.35
585 586 2.029073 CAACAGAGGCACGACCGT 59.971 61.111 0.00 0.00 46.52 4.83
586 587 2.709125 TTCCAACAGAGGCACGACCG 62.709 60.000 0.00 0.00 46.52 4.79
587 588 0.534203 TTTCCAACAGAGGCACGACC 60.534 55.000 0.00 0.00 39.61 4.79
589 590 0.250295 CCTTTCCAACAGAGGCACGA 60.250 55.000 0.00 0.00 0.00 4.35
591 592 0.110486 TCCCTTTCCAACAGAGGCAC 59.890 55.000 0.00 0.00 0.00 5.01
592 593 0.850100 TTCCCTTTCCAACAGAGGCA 59.150 50.000 0.00 0.00 0.00 4.75
593 594 1.995376 TTTCCCTTTCCAACAGAGGC 58.005 50.000 0.00 0.00 0.00 4.70
613 614 1.599797 CCGAACCGGGAGCACTTTT 60.600 57.895 6.32 0.00 44.15 2.27
614 615 2.032071 CCGAACCGGGAGCACTTT 59.968 61.111 6.32 0.00 44.15 2.66
685 686 6.484364 AAACTGTTTTCACCATTGGATTCT 57.516 33.333 10.37 0.00 0.00 2.40
694 695 7.878127 TGTCCAAATTTTAAACTGTTTTCACCA 59.122 29.630 11.48 0.00 0.00 4.17
695 696 8.172484 GTGTCCAAATTTTAAACTGTTTTCACC 58.828 33.333 11.48 0.00 0.00 4.02
754 755 7.807680 AGAGTTTTCACATTTTTCGTCTATCC 58.192 34.615 0.00 0.00 0.00 2.59
758 759 6.677781 TGAGAGTTTTCACATTTTTCGTCT 57.322 33.333 0.00 0.00 0.00 4.18
767 769 7.490962 TGTCGTAATTTGAGAGTTTTCACAT 57.509 32.000 0.00 0.00 0.00 3.21
770 772 7.279090 TCACTTGTCGTAATTTGAGAGTTTTCA 59.721 33.333 0.00 0.00 0.00 2.69
779 781 2.154198 CGCGTCACTTGTCGTAATTTGA 59.846 45.455 0.00 0.00 0.00 2.69
792 794 3.616721 AAGAGGCACCGCGTCACT 61.617 61.111 4.92 0.00 44.54 3.41
803 805 1.153369 TCATAGTGCGGCAAGAGGC 60.153 57.895 3.23 0.00 43.74 4.70
804 806 0.461548 TCTCATAGTGCGGCAAGAGG 59.538 55.000 3.23 0.00 0.00 3.69
805 807 2.133553 CATCTCATAGTGCGGCAAGAG 58.866 52.381 3.23 10.17 0.00 2.85
806 808 1.756538 TCATCTCATAGTGCGGCAAGA 59.243 47.619 3.23 3.69 0.00 3.02
808 810 2.689553 TTCATCTCATAGTGCGGCAA 57.310 45.000 3.23 0.00 0.00 4.52
809 811 2.093500 ACTTTCATCTCATAGTGCGGCA 60.093 45.455 0.00 0.00 0.00 5.69
810 812 2.286294 CACTTTCATCTCATAGTGCGGC 59.714 50.000 0.00 0.00 32.53 6.53
813 815 2.615912 GCCCACTTTCATCTCATAGTGC 59.384 50.000 0.00 0.00 37.32 4.40
814 816 4.148128 AGCCCACTTTCATCTCATAGTG 57.852 45.455 0.00 0.00 38.14 2.74
819 821 6.723298 TTTTAAAAGCCCACTTTCATCTCA 57.277 33.333 0.00 0.00 45.48 3.27
909 5105 6.439375 GGGTATGTTATGTTTCCCCTTTTTCT 59.561 38.462 0.00 0.00 0.00 2.52
919 5115 2.876550 GGCTCGGGGTATGTTATGTTTC 59.123 50.000 0.00 0.00 0.00 2.78
1300 5542 4.225042 TGCTGCTGAAGGAATCTAACCTAA 59.775 41.667 0.00 0.00 36.67 2.69
1301 5543 3.774766 TGCTGCTGAAGGAATCTAACCTA 59.225 43.478 0.00 0.00 36.67 3.08
1302 5544 2.573462 TGCTGCTGAAGGAATCTAACCT 59.427 45.455 0.00 0.00 39.69 3.50
1303 5545 2.941720 CTGCTGCTGAAGGAATCTAACC 59.058 50.000 0.00 0.00 0.00 2.85
1304 5546 2.354199 GCTGCTGCTGAAGGAATCTAAC 59.646 50.000 10.92 0.00 36.03 2.34
1366 5608 9.920133 CTGCTTGCTACATCTAATCTAATCTAA 57.080 33.333 0.00 0.00 0.00 2.10
1367 5609 9.301897 TCTGCTTGCTACATCTAATCTAATCTA 57.698 33.333 0.00 0.00 0.00 1.98
1368 5610 8.187913 TCTGCTTGCTACATCTAATCTAATCT 57.812 34.615 0.00 0.00 0.00 2.40
1369 5611 8.824159 TTCTGCTTGCTACATCTAATCTAATC 57.176 34.615 0.00 0.00 0.00 1.75
1370 5612 9.790344 AATTCTGCTTGCTACATCTAATCTAAT 57.210 29.630 0.00 0.00 0.00 1.73
1393 5635 7.220683 GCTGCACGTATATTTTGTGATCAAATT 59.779 33.333 0.00 0.00 42.14 1.82
1472 5734 2.825264 CAGGGAATCGAGGGGCTC 59.175 66.667 0.00 0.00 0.00 4.70
1570 5832 1.664874 CGGTTTCTGTCGACGATGTCA 60.665 52.381 11.62 0.00 32.09 3.58
1619 5881 1.388547 TTGGTGAGTGTTTGGCAGTC 58.611 50.000 0.00 0.00 45.46 3.51
1648 5910 0.895530 TGGCAGAGGAGGTAACGAAG 59.104 55.000 0.00 0.00 46.39 3.79
1660 5922 2.288961 GGCAACAATGAATGGCAGAG 57.711 50.000 11.01 0.00 41.38 3.35
1743 6379 5.126396 AGCATCCTTTTAGCAGTTGAAAC 57.874 39.130 0.00 0.00 0.00 2.78
1764 6404 4.033990 TCATTCTTCTAGCTGTGCGTAG 57.966 45.455 0.00 0.00 0.00 3.51
1768 6408 4.201891 CCAACATCATTCTTCTAGCTGTGC 60.202 45.833 0.00 0.00 0.00 4.57
1772 6412 5.045286 AGGAACCAACATCATTCTTCTAGCT 60.045 40.000 0.00 0.00 0.00 3.32
1773 6413 5.189180 AGGAACCAACATCATTCTTCTAGC 58.811 41.667 0.00 0.00 0.00 3.42
1774 6414 6.881065 TCAAGGAACCAACATCATTCTTCTAG 59.119 38.462 0.00 0.00 0.00 2.43
1775 6415 6.778821 TCAAGGAACCAACATCATTCTTCTA 58.221 36.000 0.00 0.00 0.00 2.10
1776 6416 5.634118 TCAAGGAACCAACATCATTCTTCT 58.366 37.500 0.00 0.00 0.00 2.85
1777 6417 5.964958 TCAAGGAACCAACATCATTCTTC 57.035 39.130 0.00 0.00 0.00 2.87
1778 6418 5.835280 AGTTCAAGGAACCAACATCATTCTT 59.165 36.000 5.54 0.00 42.85 2.52
1827 6486 4.498009 GCACACAGATTAAAATGGATCGGG 60.498 45.833 0.00 0.00 0.00 5.14
1828 6487 4.096231 TGCACACAGATTAAAATGGATCGG 59.904 41.667 0.00 0.00 0.00 4.18
1884 6543 3.157087 GGACAACATTGAGATGTGGGTT 58.843 45.455 0.00 0.00 45.58 4.11
1927 6610 8.893563 ATAACCTGAAAAGAATGGTCCAATAA 57.106 30.769 0.00 0.00 31.64 1.40
1928 6611 8.112822 TGATAACCTGAAAAGAATGGTCCAATA 58.887 33.333 0.00 0.00 31.64 1.90
1929 6612 6.953520 TGATAACCTGAAAAGAATGGTCCAAT 59.046 34.615 0.00 0.00 31.64 3.16
1930 6613 6.310941 TGATAACCTGAAAAGAATGGTCCAA 58.689 36.000 0.00 0.00 31.64 3.53
1931 6614 5.886609 TGATAACCTGAAAAGAATGGTCCA 58.113 37.500 0.00 0.00 31.64 4.02
1932 6615 6.834168 TTGATAACCTGAAAAGAATGGTCC 57.166 37.500 0.00 0.00 31.64 4.46
2012 6711 3.665323 GCACACACTTGAATGCTACGAAG 60.665 47.826 0.00 0.00 35.16 3.79
2043 6754 2.507058 TGCCCATAATCTGAGTCAAGCT 59.493 45.455 0.00 0.00 0.00 3.74
2048 6759 8.854614 ATTATTAAGTGCCCATAATCTGAGTC 57.145 34.615 0.00 0.00 0.00 3.36
2055 6766 8.757877 ACACACAAATTATTAAGTGCCCATAAT 58.242 29.630 9.39 0.00 35.47 1.28
2114 6825 9.520515 ACCTCATCATAAATAAGTTGAACTGTT 57.479 29.630 0.00 0.00 0.00 3.16
2115 6826 9.520515 AACCTCATCATAAATAAGTTGAACTGT 57.479 29.630 0.00 0.00 0.00 3.55
2136 6847 5.763204 TGATTCAGTAAACAAGTGGAACCTC 59.237 40.000 0.00 0.00 37.80 3.85
3819 13918 1.722034 TTGCCACCTCAGAGACTTCT 58.278 50.000 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.