Multiple sequence alignment - TraesCS6A01G405500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G405500 chr6A 100.000 9164 0 0 1 9164 611494107 611484944 0.000000e+00 16923.0
1 TraesCS6A01G405500 chr6D 96.364 8994 216 24 234 9164 464951790 464942845 0.000000e+00 14694.0
2 TraesCS6A01G405500 chr6B 96.138 4583 152 7 1271 5833 708946139 708941562 0.000000e+00 7459.0
3 TraesCS6A01G405500 chr6B 93.655 1781 70 9 5832 7575 708941480 708939706 0.000000e+00 2623.0
4 TraesCS6A01G405500 chr6B 90.208 1583 80 32 7574 9109 708939545 708937991 0.000000e+00 1995.0
5 TraesCS6A01G405500 chr6B 90.104 1061 62 15 234 1269 708947144 708946102 0.000000e+00 1338.0
6 TraesCS6A01G405500 chr6B 100.000 30 0 0 8341 8370 708938823 708938794 1.000000e-03 56.5
7 TraesCS6A01G405500 chr4D 77.821 257 47 8 7777 8029 126657552 126657302 5.730000e-32 150.0
8 TraesCS6A01G405500 chr5B 82.069 145 26 0 7777 7921 430146877 430146733 3.470000e-24 124.0
9 TraesCS6A01G405500 chr5B 82.069 145 26 0 7777 7921 430153585 430153441 3.470000e-24 124.0
10 TraesCS6A01G405500 chr5B 82.069 145 26 0 7777 7921 430252003 430251859 3.470000e-24 124.0
11 TraesCS6A01G405500 chr5B 96.970 33 1 0 3811 3843 235793919 235793887 1.000000e-03 56.5
12 TraesCS6A01G405500 chr2B 96.970 33 1 0 3811 3843 262746945 262746913 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G405500 chr6A 611484944 611494107 9163 True 16923.0 16923 100.000 1 9164 1 chr6A.!!$R1 9163
1 TraesCS6A01G405500 chr6D 464942845 464951790 8945 True 14694.0 14694 96.364 234 9164 1 chr6D.!!$R1 8930
2 TraesCS6A01G405500 chr6B 708937991 708947144 9153 True 2694.3 7459 94.021 234 9109 5 chr6B.!!$R1 8875

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
202 203 0.107643 TTTGACATCCGACTGTGCCA 59.892 50.000 0.00 0.00 0.00 4.92 F
205 206 0.108186 GACATCCGACTGTGCCATGA 60.108 55.000 0.00 0.00 0.00 3.07 F
1541 1577 0.248498 CTCGCCGCTGAGAATTACGA 60.248 55.000 6.43 0.00 38.28 3.43 F
1801 1852 0.034059 AGACGTGGAAACCAGCAGAG 59.966 55.000 0.00 0.00 32.34 3.35 F
2345 2396 0.034186 CCAGCTGCTTATGGGGTTCA 60.034 55.000 8.66 0.00 0.00 3.18 F
3477 3535 0.393077 AGTCAGGGTTGAAGGTGACG 59.607 55.000 0.00 0.00 43.38 4.35 F
4374 4432 0.625316 TCATTGTGGGGAGGATGGTG 59.375 55.000 0.00 0.00 0.00 4.17 F
5078 5136 0.904649 CTGTACCAGATCCAGTGGCA 59.095 55.000 3.51 0.00 38.83 4.92 F
5153 5211 1.065854 GTTGCAGTAGGAGCATCAGGT 60.066 52.381 0.00 0.00 42.33 4.00 F
6244 6411 3.357203 TGAATCGAGCAAGACTAGGAGT 58.643 45.455 0.00 0.00 0.00 3.85 F
7336 7515 2.386661 GGATACGCATACCCATGGAG 57.613 55.000 15.22 5.95 32.36 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1416 1452 0.178767 CACCAGATCCGCCATTGAGA 59.821 55.000 0.00 0.0 0.00 3.27 R
1646 1682 0.472471 TTCTCCAACGGGCACTTCTT 59.528 50.000 0.00 0.0 0.00 2.52 R
3410 3468 0.320374 TGGCTACTTCCACAACCTCG 59.680 55.000 0.00 0.0 0.00 4.63 R
3572 3630 0.250684 TCAACTCTTGGGCATCGCAA 60.251 50.000 0.00 0.0 35.16 4.85 R
3893 3951 1.136305 CGACCACCAATCCTATCACGT 59.864 52.381 0.00 0.0 0.00 4.49 R
4439 4497 1.443194 GAGCATTGCAGCACAACCG 60.443 57.895 11.91 0.0 42.27 4.44 R
5987 6149 3.205784 AGCTCTATTCTCATTGGTGCC 57.794 47.619 0.00 0.0 0.00 5.01 R
6401 6568 0.756294 TTCTGGGAACGAAGTGAGCA 59.244 50.000 0.00 0.0 45.00 4.26 R
6435 6602 0.776810 TTGATCAGCCTTGGGTTCCA 59.223 50.000 0.00 0.0 0.00 3.53 R
7848 8198 2.106566 GTCATCAGCTTCTCTCCCTCA 58.893 52.381 0.00 0.0 0.00 3.86 R
9037 9422 2.999331 ACACAGGCACAACTTACAAGT 58.001 42.857 0.00 0.0 42.04 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.691860 CTGGTAGCCAAGAAAATCACAG 57.308 45.455 0.00 0.00 30.80 3.66
22 23 3.420893 TGGTAGCCAAGAAAATCACAGG 58.579 45.455 0.00 0.00 0.00 4.00
23 24 3.073798 TGGTAGCCAAGAAAATCACAGGA 59.926 43.478 0.00 0.00 0.00 3.86
24 25 3.440522 GGTAGCCAAGAAAATCACAGGAC 59.559 47.826 0.00 0.00 0.00 3.85
25 26 2.154462 AGCCAAGAAAATCACAGGACG 58.846 47.619 0.00 0.00 0.00 4.79
26 27 1.200020 GCCAAGAAAATCACAGGACGG 59.800 52.381 0.00 0.00 0.00 4.79
27 28 2.778299 CCAAGAAAATCACAGGACGGA 58.222 47.619 0.00 0.00 0.00 4.69
28 29 3.347216 CCAAGAAAATCACAGGACGGAT 58.653 45.455 0.00 0.00 0.00 4.18
29 30 3.375299 CCAAGAAAATCACAGGACGGATC 59.625 47.826 0.00 0.00 0.00 3.36
30 31 3.981071 AGAAAATCACAGGACGGATCA 57.019 42.857 0.00 0.00 0.00 2.92
31 32 3.600388 AGAAAATCACAGGACGGATCAC 58.400 45.455 0.00 0.00 0.00 3.06
32 33 3.007940 AGAAAATCACAGGACGGATCACA 59.992 43.478 0.00 0.00 0.00 3.58
33 34 3.417069 AAATCACAGGACGGATCACAA 57.583 42.857 0.00 0.00 0.00 3.33
34 35 2.680312 ATCACAGGACGGATCACAAG 57.320 50.000 0.00 0.00 0.00 3.16
35 36 1.338107 TCACAGGACGGATCACAAGT 58.662 50.000 0.00 0.00 0.00 3.16
36 37 1.272490 TCACAGGACGGATCACAAGTC 59.728 52.381 0.00 0.00 0.00 3.01
37 38 1.000843 CACAGGACGGATCACAAGTCA 59.999 52.381 0.00 0.00 36.68 3.41
38 39 1.000955 ACAGGACGGATCACAAGTCAC 59.999 52.381 0.00 0.00 36.68 3.67
39 40 1.273606 CAGGACGGATCACAAGTCACT 59.726 52.381 0.00 0.00 36.68 3.41
40 41 2.492088 CAGGACGGATCACAAGTCACTA 59.508 50.000 0.00 0.00 36.68 2.74
41 42 3.056821 CAGGACGGATCACAAGTCACTAA 60.057 47.826 0.00 0.00 36.68 2.24
42 43 3.576982 AGGACGGATCACAAGTCACTAAA 59.423 43.478 0.00 0.00 36.68 1.85
43 44 4.223032 AGGACGGATCACAAGTCACTAAAT 59.777 41.667 0.00 0.00 36.68 1.40
44 45 4.567159 GGACGGATCACAAGTCACTAAATC 59.433 45.833 0.00 0.00 36.68 2.17
45 46 4.504858 ACGGATCACAAGTCACTAAATCC 58.495 43.478 0.00 0.00 0.00 3.01
46 47 3.871594 CGGATCACAAGTCACTAAATCCC 59.128 47.826 0.00 0.00 0.00 3.85
47 48 4.383118 CGGATCACAAGTCACTAAATCCCT 60.383 45.833 0.00 0.00 0.00 4.20
48 49 5.501156 GGATCACAAGTCACTAAATCCCTT 58.499 41.667 0.00 0.00 0.00 3.95
49 50 5.355350 GGATCACAAGTCACTAAATCCCTTG 59.645 44.000 0.00 0.00 38.71 3.61
50 51 5.560722 TCACAAGTCACTAAATCCCTTGA 57.439 39.130 0.00 0.00 36.79 3.02
51 52 5.935945 TCACAAGTCACTAAATCCCTTGAA 58.064 37.500 0.00 0.00 36.79 2.69
52 53 6.361433 TCACAAGTCACTAAATCCCTTGAAA 58.639 36.000 0.00 0.00 36.79 2.69
53 54 6.262273 TCACAAGTCACTAAATCCCTTGAAAC 59.738 38.462 0.00 0.00 36.79 2.78
54 55 5.238650 ACAAGTCACTAAATCCCTTGAAACG 59.761 40.000 0.00 0.00 36.79 3.60
55 56 5.223449 AGTCACTAAATCCCTTGAAACGA 57.777 39.130 0.00 0.00 0.00 3.85
56 57 5.238583 AGTCACTAAATCCCTTGAAACGAG 58.761 41.667 0.00 0.00 0.00 4.18
57 58 4.995487 GTCACTAAATCCCTTGAAACGAGT 59.005 41.667 0.00 0.00 0.00 4.18
58 59 4.994852 TCACTAAATCCCTTGAAACGAGTG 59.005 41.667 0.00 0.00 34.46 3.51
59 60 4.755123 CACTAAATCCCTTGAAACGAGTGT 59.245 41.667 0.00 0.00 0.00 3.55
60 61 4.755123 ACTAAATCCCTTGAAACGAGTGTG 59.245 41.667 0.00 0.00 0.00 3.82
61 62 3.485463 AATCCCTTGAAACGAGTGTGA 57.515 42.857 0.00 0.00 0.00 3.58
62 63 2.992124 TCCCTTGAAACGAGTGTGAA 57.008 45.000 0.00 0.00 0.00 3.18
63 64 3.485463 TCCCTTGAAACGAGTGTGAAT 57.515 42.857 0.00 0.00 0.00 2.57
64 65 3.399330 TCCCTTGAAACGAGTGTGAATC 58.601 45.455 0.00 0.00 0.00 2.52
65 66 3.071023 TCCCTTGAAACGAGTGTGAATCT 59.929 43.478 0.00 0.00 0.00 2.40
66 67 3.433615 CCCTTGAAACGAGTGTGAATCTC 59.566 47.826 0.00 0.00 0.00 2.75
67 68 4.058124 CCTTGAAACGAGTGTGAATCTCA 58.942 43.478 0.00 0.00 32.79 3.27
68 69 4.511454 CCTTGAAACGAGTGTGAATCTCAA 59.489 41.667 0.00 0.00 32.79 3.02
69 70 5.007626 CCTTGAAACGAGTGTGAATCTCAAA 59.992 40.000 0.00 0.00 32.79 2.69
70 71 5.657470 TGAAACGAGTGTGAATCTCAAAG 57.343 39.130 0.00 0.00 32.79 2.77
71 72 4.024893 TGAAACGAGTGTGAATCTCAAAGC 60.025 41.667 0.00 0.00 32.79 3.51
72 73 3.393089 ACGAGTGTGAATCTCAAAGCT 57.607 42.857 0.00 0.00 32.79 3.74
73 74 3.733337 ACGAGTGTGAATCTCAAAGCTT 58.267 40.909 0.00 0.00 32.79 3.74
74 75 4.130118 ACGAGTGTGAATCTCAAAGCTTT 58.870 39.130 5.69 5.69 32.79 3.51
75 76 5.297547 ACGAGTGTGAATCTCAAAGCTTTA 58.702 37.500 12.25 0.00 32.79 1.85
76 77 5.934625 ACGAGTGTGAATCTCAAAGCTTTAT 59.065 36.000 12.25 0.00 32.79 1.40
77 78 7.097192 ACGAGTGTGAATCTCAAAGCTTTATA 58.903 34.615 12.25 2.22 32.79 0.98
78 79 7.766278 ACGAGTGTGAATCTCAAAGCTTTATAT 59.234 33.333 12.25 2.91 32.79 0.86
79 80 8.607459 CGAGTGTGAATCTCAAAGCTTTATATT 58.393 33.333 12.25 11.36 32.79 1.28
80 81 9.713740 GAGTGTGAATCTCAAAGCTTTATATTG 57.286 33.333 12.25 0.00 32.79 1.90
81 82 9.453572 AGTGTGAATCTCAAAGCTTTATATTGA 57.546 29.630 12.25 4.42 0.00 2.57
102 103 7.843490 TTGAAGAATAAGAAAGGGTATGACG 57.157 36.000 0.00 0.00 0.00 4.35
103 104 6.346096 TGAAGAATAAGAAAGGGTATGACGG 58.654 40.000 0.00 0.00 0.00 4.79
104 105 6.155565 TGAAGAATAAGAAAGGGTATGACGGA 59.844 38.462 0.00 0.00 0.00 4.69
105 106 6.555463 AGAATAAGAAAGGGTATGACGGAA 57.445 37.500 0.00 0.00 0.00 4.30
106 107 7.138054 AGAATAAGAAAGGGTATGACGGAAT 57.862 36.000 0.00 0.00 0.00 3.01
107 108 8.258850 AGAATAAGAAAGGGTATGACGGAATA 57.741 34.615 0.00 0.00 0.00 1.75
108 109 8.881262 AGAATAAGAAAGGGTATGACGGAATAT 58.119 33.333 0.00 0.00 0.00 1.28
111 112 7.850935 AAGAAAGGGTATGACGGAATATAGA 57.149 36.000 0.00 0.00 0.00 1.98
112 113 8.437274 AAGAAAGGGTATGACGGAATATAGAT 57.563 34.615 0.00 0.00 0.00 1.98
113 114 7.841956 AGAAAGGGTATGACGGAATATAGATG 58.158 38.462 0.00 0.00 0.00 2.90
114 115 7.674348 AGAAAGGGTATGACGGAATATAGATGA 59.326 37.037 0.00 0.00 0.00 2.92
115 116 7.411486 AAGGGTATGACGGAATATAGATGAG 57.589 40.000 0.00 0.00 0.00 2.90
116 117 6.732487 AGGGTATGACGGAATATAGATGAGA 58.268 40.000 0.00 0.00 0.00 3.27
117 118 6.603997 AGGGTATGACGGAATATAGATGAGAC 59.396 42.308 0.00 0.00 0.00 3.36
118 119 6.377429 GGGTATGACGGAATATAGATGAGACA 59.623 42.308 0.00 0.00 0.00 3.41
119 120 7.068839 GGGTATGACGGAATATAGATGAGACAT 59.931 40.741 0.00 0.00 0.00 3.06
120 121 7.918033 GGTATGACGGAATATAGATGAGACATG 59.082 40.741 0.00 0.00 0.00 3.21
121 122 6.272822 TGACGGAATATAGATGAGACATGG 57.727 41.667 0.00 0.00 0.00 3.66
122 123 6.010219 TGACGGAATATAGATGAGACATGGA 58.990 40.000 0.00 0.00 0.00 3.41
123 124 6.151817 TGACGGAATATAGATGAGACATGGAG 59.848 42.308 0.00 0.00 0.00 3.86
124 125 6.249192 ACGGAATATAGATGAGACATGGAGA 58.751 40.000 0.00 0.00 0.00 3.71
125 126 6.151985 ACGGAATATAGATGAGACATGGAGAC 59.848 42.308 0.00 0.00 0.00 3.36
126 127 6.376864 CGGAATATAGATGAGACATGGAGACT 59.623 42.308 0.00 0.00 0.00 3.24
127 128 7.093988 CGGAATATAGATGAGACATGGAGACTT 60.094 40.741 0.00 0.00 0.00 3.01
128 129 8.250332 GGAATATAGATGAGACATGGAGACTTC 58.750 40.741 0.00 0.00 0.00 3.01
129 130 8.954834 AATATAGATGAGACATGGAGACTTCT 57.045 34.615 0.00 2.09 0.00 2.85
130 131 6.653526 ATAGATGAGACATGGAGACTTCTG 57.346 41.667 0.00 0.00 0.00 3.02
131 132 3.705579 AGATGAGACATGGAGACTTCTGG 59.294 47.826 0.00 0.00 0.00 3.86
132 133 3.175438 TGAGACATGGAGACTTCTGGA 57.825 47.619 0.00 0.00 0.00 3.86
133 134 3.717576 TGAGACATGGAGACTTCTGGAT 58.282 45.455 0.00 0.00 0.00 3.41
134 135 4.099633 TGAGACATGGAGACTTCTGGATT 58.900 43.478 0.00 0.00 0.00 3.01
135 136 4.533707 TGAGACATGGAGACTTCTGGATTT 59.466 41.667 0.00 0.00 0.00 2.17
136 137 5.096443 AGACATGGAGACTTCTGGATTTC 57.904 43.478 0.00 0.00 0.00 2.17
137 138 4.782156 AGACATGGAGACTTCTGGATTTCT 59.218 41.667 0.00 0.00 0.00 2.52
138 139 5.096443 ACATGGAGACTTCTGGATTTCTC 57.904 43.478 0.00 0.00 34.83 2.87
139 140 4.782156 ACATGGAGACTTCTGGATTTCTCT 59.218 41.667 0.00 0.00 35.74 3.10
140 141 4.815533 TGGAGACTTCTGGATTTCTCTG 57.184 45.455 0.00 0.00 35.74 3.35
141 142 4.163427 TGGAGACTTCTGGATTTCTCTGT 58.837 43.478 0.00 0.00 35.74 3.41
142 143 4.020751 TGGAGACTTCTGGATTTCTCTGTG 60.021 45.833 0.00 0.00 35.74 3.66
143 144 4.502962 GAGACTTCTGGATTTCTCTGTGG 58.497 47.826 0.00 0.00 33.14 4.17
144 145 3.906846 AGACTTCTGGATTTCTCTGTGGT 59.093 43.478 0.00 0.00 0.00 4.16
145 146 5.087323 AGACTTCTGGATTTCTCTGTGGTA 58.913 41.667 0.00 0.00 0.00 3.25
146 147 5.186797 AGACTTCTGGATTTCTCTGTGGTAG 59.813 44.000 0.00 0.00 0.00 3.18
147 148 4.841246 ACTTCTGGATTTCTCTGTGGTAGT 59.159 41.667 0.00 0.00 0.00 2.73
148 149 6.017192 ACTTCTGGATTTCTCTGTGGTAGTA 58.983 40.000 0.00 0.00 0.00 1.82
149 150 6.670027 ACTTCTGGATTTCTCTGTGGTAGTAT 59.330 38.462 0.00 0.00 0.00 2.12
150 151 7.181125 ACTTCTGGATTTCTCTGTGGTAGTATT 59.819 37.037 0.00 0.00 0.00 1.89
151 152 6.878317 TCTGGATTTCTCTGTGGTAGTATTG 58.122 40.000 0.00 0.00 0.00 1.90
152 153 5.428253 TGGATTTCTCTGTGGTAGTATTGC 58.572 41.667 0.00 0.00 0.00 3.56
153 154 4.508124 GGATTTCTCTGTGGTAGTATTGCG 59.492 45.833 0.00 0.00 0.00 4.85
154 155 4.794278 TTTCTCTGTGGTAGTATTGCGA 57.206 40.909 0.00 0.00 0.00 5.10
155 156 4.794278 TTCTCTGTGGTAGTATTGCGAA 57.206 40.909 0.00 0.00 0.00 4.70
156 157 5.339008 TTCTCTGTGGTAGTATTGCGAAT 57.661 39.130 0.00 0.00 0.00 3.34
157 158 5.339008 TCTCTGTGGTAGTATTGCGAATT 57.661 39.130 0.00 0.00 0.00 2.17
158 159 5.109210 TCTCTGTGGTAGTATTGCGAATTG 58.891 41.667 0.00 0.00 0.00 2.32
159 160 4.827692 TCTGTGGTAGTATTGCGAATTGT 58.172 39.130 0.00 0.00 0.00 2.71
160 161 5.242434 TCTGTGGTAGTATTGCGAATTGTT 58.758 37.500 0.00 0.00 0.00 2.83
161 162 5.350365 TCTGTGGTAGTATTGCGAATTGTTC 59.650 40.000 0.00 0.00 0.00 3.18
162 163 4.998033 TGTGGTAGTATTGCGAATTGTTCA 59.002 37.500 0.00 0.00 0.00 3.18
163 164 5.645929 TGTGGTAGTATTGCGAATTGTTCAT 59.354 36.000 0.00 0.00 0.00 2.57
164 165 6.819146 TGTGGTAGTATTGCGAATTGTTCATA 59.181 34.615 0.00 0.00 0.00 2.15
165 166 7.123830 GTGGTAGTATTGCGAATTGTTCATAC 58.876 38.462 0.00 0.00 0.00 2.39
166 167 6.819146 TGGTAGTATTGCGAATTGTTCATACA 59.181 34.615 0.00 0.00 0.00 2.29
167 168 7.497579 TGGTAGTATTGCGAATTGTTCATACAT 59.502 33.333 0.00 0.00 33.44 2.29
168 169 7.798516 GGTAGTATTGCGAATTGTTCATACATG 59.201 37.037 0.00 0.00 33.44 3.21
169 170 7.320443 AGTATTGCGAATTGTTCATACATGT 57.680 32.000 2.69 2.69 33.44 3.21
170 171 8.432110 AGTATTGCGAATTGTTCATACATGTA 57.568 30.769 8.27 8.27 33.44 2.29
171 172 9.056005 AGTATTGCGAATTGTTCATACATGTAT 57.944 29.630 12.75 12.75 33.44 2.29
172 173 9.106286 GTATTGCGAATTGTTCATACATGTATG 57.894 33.333 31.63 31.63 43.16 2.39
173 174 5.509771 TGCGAATTGTTCATACATGTATGC 58.490 37.500 32.32 22.65 41.92 3.14
174 175 5.065731 TGCGAATTGTTCATACATGTATGCA 59.934 36.000 32.32 23.66 41.92 3.96
175 176 5.970612 GCGAATTGTTCATACATGTATGCAA 59.029 36.000 32.32 29.33 41.92 4.08
176 177 6.471841 GCGAATTGTTCATACATGTATGCAAA 59.528 34.615 32.32 25.62 41.92 3.68
177 178 7.305590 GCGAATTGTTCATACATGTATGCAAAG 60.306 37.037 32.32 24.78 41.92 2.77
178 179 7.697710 CGAATTGTTCATACATGTATGCAAAGT 59.302 33.333 32.32 24.84 41.92 2.66
182 183 7.471721 TGTTCATACATGTATGCAAAGTAAGC 58.528 34.615 32.32 19.38 41.92 3.09
183 184 7.336679 TGTTCATACATGTATGCAAAGTAAGCT 59.663 33.333 32.32 1.32 41.92 3.74
184 185 7.864108 TCATACATGTATGCAAAGTAAGCTT 57.136 32.000 32.32 3.48 41.92 3.74
185 186 8.279970 TCATACATGTATGCAAAGTAAGCTTT 57.720 30.769 32.32 0.27 41.77 3.51
196 197 3.963428 AGTAAGCTTTGACATCCGACT 57.037 42.857 3.20 0.00 0.00 4.18
197 198 3.589988 AGTAAGCTTTGACATCCGACTG 58.410 45.455 3.20 0.00 0.00 3.51
198 199 2.550830 AAGCTTTGACATCCGACTGT 57.449 45.000 0.00 0.00 0.00 3.55
199 200 1.800805 AGCTTTGACATCCGACTGTG 58.199 50.000 0.00 0.00 0.00 3.66
200 201 0.166814 GCTTTGACATCCGACTGTGC 59.833 55.000 0.00 0.00 0.00 4.57
201 202 0.798776 CTTTGACATCCGACTGTGCC 59.201 55.000 0.00 0.00 0.00 5.01
202 203 0.107643 TTTGACATCCGACTGTGCCA 59.892 50.000 0.00 0.00 0.00 4.92
203 204 0.324614 TTGACATCCGACTGTGCCAT 59.675 50.000 0.00 0.00 0.00 4.40
204 205 0.391528 TGACATCCGACTGTGCCATG 60.392 55.000 0.00 0.00 0.00 3.66
205 206 0.108186 GACATCCGACTGTGCCATGA 60.108 55.000 0.00 0.00 0.00 3.07
206 207 0.324614 ACATCCGACTGTGCCATGAA 59.675 50.000 0.00 0.00 0.00 2.57
207 208 1.012086 CATCCGACTGTGCCATGAAG 58.988 55.000 0.00 0.00 0.00 3.02
208 209 0.904649 ATCCGACTGTGCCATGAAGA 59.095 50.000 0.00 0.00 0.00 2.87
209 210 0.684535 TCCGACTGTGCCATGAAGAA 59.315 50.000 0.00 0.00 0.00 2.52
210 211 1.071542 TCCGACTGTGCCATGAAGAAA 59.928 47.619 0.00 0.00 0.00 2.52
211 212 1.466167 CCGACTGTGCCATGAAGAAAG 59.534 52.381 0.00 0.00 0.00 2.62
212 213 1.135859 CGACTGTGCCATGAAGAAAGC 60.136 52.381 0.00 0.00 0.00 3.51
213 214 1.881973 GACTGTGCCATGAAGAAAGCA 59.118 47.619 0.00 0.00 0.00 3.91
214 215 2.294233 GACTGTGCCATGAAGAAAGCAA 59.706 45.455 0.00 0.00 36.91 3.91
215 216 2.295349 ACTGTGCCATGAAGAAAGCAAG 59.705 45.455 0.00 0.00 36.91 4.01
216 217 1.000060 TGTGCCATGAAGAAAGCAAGC 60.000 47.619 0.00 0.00 36.91 4.01
217 218 1.000060 GTGCCATGAAGAAAGCAAGCA 60.000 47.619 0.00 0.00 36.91 3.91
218 219 1.897133 TGCCATGAAGAAAGCAAGCAT 59.103 42.857 0.00 0.00 30.97 3.79
219 220 2.268298 GCCATGAAGAAAGCAAGCATG 58.732 47.619 0.00 0.00 36.87 4.06
230 231 1.277739 CAAGCATGCCGATGTAGCG 59.722 57.895 15.66 0.00 31.50 4.26
231 232 2.537560 AAGCATGCCGATGTAGCGC 61.538 57.895 15.66 0.00 31.50 5.92
232 233 2.930385 AAGCATGCCGATGTAGCGCT 62.930 55.000 17.26 17.26 31.50 5.92
248 249 0.385390 CGCTGGGCCCATATGAAAAC 59.615 55.000 28.82 6.53 0.00 2.43
259 260 4.555262 CCATATGAAAACTTGGCGTGTTT 58.445 39.130 3.65 2.51 39.03 2.83
268 269 1.002087 CTTGGCGTGTTTCTAGGGTCT 59.998 52.381 0.00 0.00 0.00 3.85
271 272 1.672145 GGCGTGTTTCTAGGGTCTGTC 60.672 57.143 0.00 0.00 0.00 3.51
272 273 1.000506 GCGTGTTTCTAGGGTCTGTCA 59.999 52.381 0.00 0.00 0.00 3.58
304 305 7.181569 CCCATATGAAAACTTGGGTGTTAAT 57.818 36.000 3.65 0.00 43.25 1.40
305 306 8.299990 CCCATATGAAAACTTGGGTGTTAATA 57.700 34.615 3.65 0.00 43.25 0.98
306 307 8.413229 CCCATATGAAAACTTGGGTGTTAATAG 58.587 37.037 3.65 0.00 43.25 1.73
307 308 8.413229 CCATATGAAAACTTGGGTGTTAATAGG 58.587 37.037 3.65 0.00 0.00 2.57
308 309 9.184523 CATATGAAAACTTGGGTGTTAATAGGA 57.815 33.333 0.00 0.00 25.37 2.94
309 310 9.936329 ATATGAAAACTTGGGTGTTAATAGGAT 57.064 29.630 0.00 0.00 0.00 3.24
310 311 8.664669 ATGAAAACTTGGGTGTTAATAGGATT 57.335 30.769 0.00 0.00 0.00 3.01
311 312 8.485578 TGAAAACTTGGGTGTTAATAGGATTT 57.514 30.769 0.00 0.00 0.00 2.17
312 313 8.364142 TGAAAACTTGGGTGTTAATAGGATTTG 58.636 33.333 0.00 0.00 0.00 2.32
313 314 7.849322 AAACTTGGGTGTTAATAGGATTTGT 57.151 32.000 0.00 0.00 0.00 2.83
314 315 7.462571 AACTTGGGTGTTAATAGGATTTGTC 57.537 36.000 0.00 0.00 0.00 3.18
343 353 2.086869 TCTTAAATCGAGGACGTCCGT 58.913 47.619 28.26 16.89 42.08 4.69
344 354 2.489329 TCTTAAATCGAGGACGTCCGTT 59.511 45.455 28.26 18.17 42.08 4.44
346 356 0.599558 AAATCGAGGACGTCCGTTCA 59.400 50.000 28.26 14.30 42.08 3.18
372 382 2.372837 TGTAACCTTCGGCCTACCTTTT 59.627 45.455 0.00 0.00 0.00 2.27
384 394 2.166254 CCTACCTTTTCGTTACCGCCTA 59.834 50.000 0.00 0.00 0.00 3.93
421 431 7.344913 TCCCTATTTATTAACGGGCTTTAACA 58.655 34.615 0.00 0.00 34.84 2.41
448 458 2.582728 TACGACACAACAAACCGACT 57.417 45.000 0.00 0.00 0.00 4.18
449 459 2.582728 ACGACACAACAAACCGACTA 57.417 45.000 0.00 0.00 0.00 2.59
474 484 0.308376 TAGTTTTGGCGCGAAACACC 59.692 50.000 28.24 16.33 39.46 4.16
477 487 1.668101 TTTTGGCGCGAAACACCCTT 61.668 50.000 17.56 0.00 0.00 3.95
488 498 0.834687 AACACCCTTCGCAGACCCTA 60.835 55.000 0.00 0.00 34.32 3.53
517 527 1.161843 CGATTACCCAGCAAACCGTT 58.838 50.000 0.00 0.00 0.00 4.44
522 532 0.822121 ACCCAGCAAACCGTTTCTCC 60.822 55.000 0.00 0.00 0.00 3.71
531 541 3.755628 CGTTTCTCCCGCCTCCGA 61.756 66.667 0.00 0.00 36.29 4.55
550 562 3.134792 GCGAGAGAGGAGGCACGA 61.135 66.667 0.00 0.00 0.00 4.35
580 592 4.680537 ACGTCCCTCTCCGCCACT 62.681 66.667 0.00 0.00 0.00 4.00
609 628 2.668212 CGGGCATCAACCACACGT 60.668 61.111 0.00 0.00 0.00 4.49
669 688 0.462759 CGCAGATCAGGGAAGGGTTC 60.463 60.000 0.00 0.00 0.00 3.62
1275 1311 1.580066 TAGGGTTGGGGGATGGCTTG 61.580 60.000 0.00 0.00 0.00 4.01
1539 1575 0.876342 CCCTCGCCGCTGAGAATTAC 60.876 60.000 12.07 0.00 38.28 1.89
1541 1577 0.248498 CTCGCCGCTGAGAATTACGA 60.248 55.000 6.43 0.00 38.28 3.43
1545 1581 1.060698 GCCGCTGAGAATTACGACAAC 59.939 52.381 0.00 0.00 0.00 3.32
1557 1593 2.126346 GACAACGCAATGGCAGGC 60.126 61.111 4.01 4.01 41.24 4.85
1583 1619 4.896979 TCCCAGGAGGAGGTCAAG 57.103 61.111 0.00 0.00 40.93 3.02
1617 1653 2.548920 GGCTGCTTATTCTGATAGGCGT 60.549 50.000 0.00 0.00 42.11 5.68
1651 1687 1.344942 CCGTCGAGCCGTTGAAGAAG 61.345 60.000 0.00 0.00 0.00 2.85
1652 1688 0.663568 CGTCGAGCCGTTGAAGAAGT 60.664 55.000 0.00 0.00 0.00 3.01
1674 1725 2.885113 GTTGGAGAATTGGCGGCC 59.115 61.111 13.32 13.32 0.00 6.13
1679 1730 3.338250 AGAATTGGCGGCCCCTGA 61.338 61.111 17.97 0.00 0.00 3.86
1746 1797 2.305635 TGTGGATAAAGAAGAGGCTGCA 59.694 45.455 0.50 0.00 0.00 4.41
1797 1848 1.282875 GCAAGACGTGGAAACCAGC 59.717 57.895 0.00 0.00 32.34 4.85
1801 1852 0.034059 AGACGTGGAAACCAGCAGAG 59.966 55.000 0.00 0.00 32.34 3.35
1811 1862 1.002868 CCAGCAGAGTTGTGGAGGG 60.003 63.158 0.00 0.00 32.60 4.30
1981 2032 0.325602 TGATGCACAGACATGCTCCA 59.674 50.000 0.00 0.00 46.28 3.86
2214 2265 3.418684 TTTCTCTTGGCAAGGTCTACC 57.581 47.619 25.92 0.00 0.00 3.18
2215 2266 0.895530 TCTCTTGGCAAGGTCTACCG 59.104 55.000 25.92 7.26 42.08 4.02
2345 2396 0.034186 CCAGCTGCTTATGGGGTTCA 60.034 55.000 8.66 0.00 0.00 3.18
2352 2403 1.754201 GCTTATGGGGTTCATGGGTCC 60.754 57.143 0.00 0.00 37.30 4.46
2430 2481 1.220529 ATATCATTGACGTGGCAGCG 58.779 50.000 0.00 7.71 37.94 5.18
2629 2683 8.491950 TCAAACCAAAAGATAAAATTAAAGCGC 58.508 29.630 0.00 0.00 0.00 5.92
2648 2702 3.329386 CGCTGGAAGTTCTTGAGAATCA 58.671 45.455 2.25 0.00 39.51 2.57
2812 2866 1.750193 TGTTTGCTACATGCCCTAGC 58.250 50.000 6.83 6.83 42.00 3.42
2821 2875 3.439857 ACATGCCCTAGCTTCTTTTCA 57.560 42.857 0.00 0.00 40.80 2.69
2880 2934 1.935873 CCCTGCATCATGTTACTGACG 59.064 52.381 0.00 0.00 0.00 4.35
3058 3112 4.082625 TCAGAATGTAAGTTGCATTGCCTG 60.083 41.667 21.86 20.89 36.77 4.85
3086 3140 7.595604 TCGTGACATCTGTGTTATTACTTACA 58.404 34.615 0.00 0.00 39.09 2.41
3197 3251 4.946784 AAGCTGTCGAAATATGTGAACC 57.053 40.909 0.00 0.00 0.00 3.62
3206 3260 8.172484 TGTCGAAATATGTGAACCTTTTATTCG 58.828 33.333 0.00 0.00 0.00 3.34
3232 3286 6.864342 TCCTTTTACCAGTTTCTAGATCTCG 58.136 40.000 0.00 0.00 0.00 4.04
3235 3291 6.600882 TTTACCAGTTTCTAGATCTCGGTT 57.399 37.500 0.00 0.00 0.00 4.44
3236 3292 6.600882 TTACCAGTTTCTAGATCTCGGTTT 57.399 37.500 0.00 0.00 0.00 3.27
3237 3293 7.707624 TTACCAGTTTCTAGATCTCGGTTTA 57.292 36.000 0.00 8.95 0.00 2.01
3238 3294 5.963594 ACCAGTTTCTAGATCTCGGTTTAC 58.036 41.667 0.00 0.00 0.00 2.01
3239 3295 5.715753 ACCAGTTTCTAGATCTCGGTTTACT 59.284 40.000 0.00 0.00 0.00 2.24
3240 3296 6.888632 ACCAGTTTCTAGATCTCGGTTTACTA 59.111 38.462 0.00 0.00 0.00 1.82
3241 3297 7.148103 ACCAGTTTCTAGATCTCGGTTTACTAC 60.148 40.741 0.00 0.00 0.00 2.73
3242 3298 7.067251 CCAGTTTCTAGATCTCGGTTTACTACT 59.933 40.741 0.00 0.00 0.00 2.57
3243 3299 9.107177 CAGTTTCTAGATCTCGGTTTACTACTA 57.893 37.037 0.00 0.00 0.00 1.82
3244 3300 9.678260 AGTTTCTAGATCTCGGTTTACTACTAA 57.322 33.333 0.00 0.00 0.00 2.24
3410 3468 2.760650 GGGTCATGGAATTCCTTGTTCC 59.239 50.000 29.65 28.63 44.32 3.62
3477 3535 0.393077 AGTCAGGGTTGAAGGTGACG 59.607 55.000 0.00 0.00 43.38 4.35
3507 3565 7.440198 TGCTGTATCTCTCCAGAATAAAGATG 58.560 38.462 0.00 0.00 30.24 2.90
3572 3630 3.845781 AATAATGTCCCTGACGCTCAT 57.154 42.857 0.00 0.00 34.95 2.90
3622 3680 2.508526 ACAGTCCAAAGAACAGGCATC 58.491 47.619 0.00 0.00 0.00 3.91
3668 3726 3.446442 ACTGAAGGTGGAGATGCATTT 57.554 42.857 0.00 0.00 0.00 2.32
3796 3854 1.826385 AAAGTTGAATCTGGAGGGCG 58.174 50.000 0.00 0.00 0.00 6.13
3893 3951 1.942657 GCTGTCACTGTTCTTGAAGCA 59.057 47.619 0.00 0.00 32.23 3.91
3926 3984 3.916761 TGGTGGTCGTGTTTATACAGAC 58.083 45.455 7.09 7.09 34.24 3.51
4229 4287 3.140895 CCCTTGAGGATGGGTTGGAATAT 59.859 47.826 0.00 0.00 38.65 1.28
4251 4309 4.273148 ACTCTTAGGAAGAAACGTGCAT 57.727 40.909 0.00 0.00 37.02 3.96
4258 4316 1.812571 GAAGAAACGTGCATCCCATGT 59.187 47.619 0.00 0.00 45.44 3.21
4282 4340 3.354948 TTCTTCTGTGGGACATGATGG 57.645 47.619 0.00 0.00 44.52 3.51
4299 4357 9.547753 GACATGATGGTCAGTTAATAAGTATGT 57.452 33.333 0.00 0.00 37.73 2.29
4300 4358 9.547753 ACATGATGGTCAGTTAATAAGTATGTC 57.452 33.333 0.00 0.00 0.00 3.06
4303 4361 8.544622 TGATGGTCAGTTAATAAGTATGTCCAA 58.455 33.333 0.00 0.00 33.81 3.53
4315 4373 4.884961 AGTATGTCCAATAGAGGAGGTGT 58.115 43.478 0.00 0.00 38.64 4.16
4330 4388 5.316987 AGGAGGTGTAGACATTTCCAAAAG 58.683 41.667 14.26 0.00 35.18 2.27
4374 4432 0.625316 TCATTGTGGGGAGGATGGTG 59.375 55.000 0.00 0.00 0.00 4.17
4475 4533 3.186119 GCTCAAATCTGTCTCTCTTCCG 58.814 50.000 0.00 0.00 0.00 4.30
4508 4566 4.696479 AGATGATGTGTATGGAGGGTTC 57.304 45.455 0.00 0.00 0.00 3.62
5078 5136 0.904649 CTGTACCAGATCCAGTGGCA 59.095 55.000 3.51 0.00 38.83 4.92
5153 5211 1.065854 GTTGCAGTAGGAGCATCAGGT 60.066 52.381 0.00 0.00 42.33 4.00
5345 5403 4.631813 GTGGAAGCTCTACAAACATACCAG 59.368 45.833 0.00 0.00 0.00 4.00
6244 6411 3.357203 TGAATCGAGCAAGACTAGGAGT 58.643 45.455 0.00 0.00 0.00 3.85
6401 6568 3.370840 TGGCTACAAAATCTGATGGCT 57.629 42.857 0.00 0.00 0.00 4.75
6435 6602 2.619849 CCCAGAAGCAACACCATGATCT 60.620 50.000 0.00 0.00 0.00 2.75
6689 6868 7.337938 TGAAACAGAATTCAGAGTGCCATATA 58.662 34.615 8.44 0.00 34.50 0.86
6907 7086 2.959707 AGTGATAAGTAAGCCTCGGGAG 59.040 50.000 0.00 0.00 0.00 4.30
7336 7515 2.386661 GGATACGCATACCCATGGAG 57.613 55.000 15.22 5.95 32.36 3.86
7654 7995 4.841813 TCAGGGGTGTTGAACTGTAGATAA 59.158 41.667 0.00 0.00 32.92 1.75
7655 7996 4.935808 CAGGGGTGTTGAACTGTAGATAAC 59.064 45.833 0.00 0.00 0.00 1.89
7656 7997 4.844655 AGGGGTGTTGAACTGTAGATAACT 59.155 41.667 0.00 0.00 0.00 2.24
7657 7998 6.021030 AGGGGTGTTGAACTGTAGATAACTA 58.979 40.000 0.00 0.00 0.00 2.24
7658 7999 6.154706 AGGGGTGTTGAACTGTAGATAACTAG 59.845 42.308 0.00 0.00 0.00 2.57
7659 8000 6.154021 GGGGTGTTGAACTGTAGATAACTAGA 59.846 42.308 0.00 0.00 0.00 2.43
7660 8001 7.147707 GGGGTGTTGAACTGTAGATAACTAGAT 60.148 40.741 0.00 0.00 0.00 1.98
7661 8002 8.910944 GGGTGTTGAACTGTAGATAACTAGATA 58.089 37.037 0.00 0.00 0.00 1.98
7848 8198 5.358725 TCAACAGATAATTGATGCATGCACT 59.641 36.000 25.37 12.53 31.11 4.40
7923 8273 3.764885 AAGGTGCGTGCAAGATTAATC 57.235 42.857 7.41 7.41 0.00 1.75
7967 8317 6.272558 ACTCTACCTTACTGATTTTTCAGGGT 59.727 38.462 7.80 7.53 41.76 4.34
8317 8690 2.436417 ACCGAACCATGAACCAGATTG 58.564 47.619 0.00 0.00 0.00 2.67
8318 8691 2.039746 ACCGAACCATGAACCAGATTGA 59.960 45.455 0.00 0.00 0.00 2.57
8419 8799 1.443194 CAGACAAACATGGCTGCGC 60.443 57.895 0.00 0.00 38.20 6.09
8628 9009 3.916989 ACCAGACTAGACCCCATCTTTTT 59.083 43.478 0.00 0.00 39.04 1.94
9037 9422 1.213182 TGTTGTGTTTCCCAGCTGGTA 59.787 47.619 30.63 13.99 34.77 3.25
9100 9485 3.976942 GCATCATGTTCGAATATGGTTGC 59.023 43.478 28.96 28.96 33.67 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.441572 CCTGTGATTTTCTTGGCTACCAG 59.558 47.826 0.00 0.00 33.81 4.00
1 2 3.073798 TCCTGTGATTTTCTTGGCTACCA 59.926 43.478 0.00 0.00 0.00 3.25
2 3 3.440522 GTCCTGTGATTTTCTTGGCTACC 59.559 47.826 0.00 0.00 0.00 3.18
3 4 3.125316 CGTCCTGTGATTTTCTTGGCTAC 59.875 47.826 0.00 0.00 0.00 3.58
4 5 3.334691 CGTCCTGTGATTTTCTTGGCTA 58.665 45.455 0.00 0.00 0.00 3.93
5 6 2.154462 CGTCCTGTGATTTTCTTGGCT 58.846 47.619 0.00 0.00 0.00 4.75
6 7 1.200020 CCGTCCTGTGATTTTCTTGGC 59.800 52.381 0.00 0.00 0.00 4.52
7 8 2.778299 TCCGTCCTGTGATTTTCTTGG 58.222 47.619 0.00 0.00 0.00 3.61
8 9 4.002982 TGATCCGTCCTGTGATTTTCTTG 58.997 43.478 0.00 0.00 0.00 3.02
9 10 4.003648 GTGATCCGTCCTGTGATTTTCTT 58.996 43.478 0.00 0.00 0.00 2.52
10 11 3.007940 TGTGATCCGTCCTGTGATTTTCT 59.992 43.478 0.00 0.00 0.00 2.52
11 12 3.334691 TGTGATCCGTCCTGTGATTTTC 58.665 45.455 0.00 0.00 0.00 2.29
12 13 3.417069 TGTGATCCGTCCTGTGATTTT 57.583 42.857 0.00 0.00 0.00 1.82
13 14 3.244561 ACTTGTGATCCGTCCTGTGATTT 60.245 43.478 0.00 0.00 0.00 2.17
14 15 2.303022 ACTTGTGATCCGTCCTGTGATT 59.697 45.455 0.00 0.00 0.00 2.57
15 16 1.902508 ACTTGTGATCCGTCCTGTGAT 59.097 47.619 0.00 0.00 0.00 3.06
16 17 1.272490 GACTTGTGATCCGTCCTGTGA 59.728 52.381 0.00 0.00 0.00 3.58
17 18 1.000843 TGACTTGTGATCCGTCCTGTG 59.999 52.381 0.00 0.00 0.00 3.66
18 19 1.000955 GTGACTTGTGATCCGTCCTGT 59.999 52.381 0.00 0.00 0.00 4.00
19 20 1.273606 AGTGACTTGTGATCCGTCCTG 59.726 52.381 0.00 0.00 0.00 3.86
20 21 1.633774 AGTGACTTGTGATCCGTCCT 58.366 50.000 0.00 0.00 0.00 3.85
21 22 3.587797 TTAGTGACTTGTGATCCGTCC 57.412 47.619 0.00 0.00 0.00 4.79
22 23 4.567159 GGATTTAGTGACTTGTGATCCGTC 59.433 45.833 0.00 0.00 0.00 4.79
23 24 4.504858 GGATTTAGTGACTTGTGATCCGT 58.495 43.478 0.00 0.00 0.00 4.69
24 25 3.871594 GGGATTTAGTGACTTGTGATCCG 59.128 47.826 0.00 0.00 33.94 4.18
25 26 5.104259 AGGGATTTAGTGACTTGTGATCC 57.896 43.478 0.00 0.00 0.00 3.36
26 27 6.173339 TCAAGGGATTTAGTGACTTGTGATC 58.827 40.000 0.00 0.00 39.49 2.92
27 28 6.126863 TCAAGGGATTTAGTGACTTGTGAT 57.873 37.500 0.00 0.00 39.49 3.06
28 29 5.560722 TCAAGGGATTTAGTGACTTGTGA 57.439 39.130 0.00 0.00 39.49 3.58
29 30 6.438763 GTTTCAAGGGATTTAGTGACTTGTG 58.561 40.000 0.00 0.00 39.49 3.33
30 31 5.238650 CGTTTCAAGGGATTTAGTGACTTGT 59.761 40.000 0.00 0.00 39.49 3.16
31 32 5.468746 TCGTTTCAAGGGATTTAGTGACTTG 59.531 40.000 0.00 0.00 39.76 3.16
32 33 5.617252 TCGTTTCAAGGGATTTAGTGACTT 58.383 37.500 0.00 0.00 0.00 3.01
33 34 5.221661 ACTCGTTTCAAGGGATTTAGTGACT 60.222 40.000 0.00 0.00 0.00 3.41
34 35 4.995487 ACTCGTTTCAAGGGATTTAGTGAC 59.005 41.667 0.00 0.00 0.00 3.67
35 36 4.994852 CACTCGTTTCAAGGGATTTAGTGA 59.005 41.667 0.00 0.00 35.05 3.41
36 37 4.755123 ACACTCGTTTCAAGGGATTTAGTG 59.245 41.667 0.00 0.00 38.18 2.74
37 38 4.755123 CACACTCGTTTCAAGGGATTTAGT 59.245 41.667 0.00 0.00 0.00 2.24
38 39 4.994852 TCACACTCGTTTCAAGGGATTTAG 59.005 41.667 0.00 0.00 0.00 1.85
39 40 4.963373 TCACACTCGTTTCAAGGGATTTA 58.037 39.130 0.00 0.00 0.00 1.40
40 41 3.815809 TCACACTCGTTTCAAGGGATTT 58.184 40.909 0.00 0.00 0.00 2.17
41 42 3.485463 TCACACTCGTTTCAAGGGATT 57.515 42.857 0.00 0.00 0.00 3.01
42 43 3.485463 TTCACACTCGTTTCAAGGGAT 57.515 42.857 0.00 0.00 0.00 3.85
43 44 2.992124 TTCACACTCGTTTCAAGGGA 57.008 45.000 0.00 0.00 0.00 4.20
44 45 3.403038 AGATTCACACTCGTTTCAAGGG 58.597 45.455 0.00 0.00 0.00 3.95
45 46 4.058124 TGAGATTCACACTCGTTTCAAGG 58.942 43.478 0.00 0.00 37.22 3.61
46 47 5.657470 TTGAGATTCACACTCGTTTCAAG 57.343 39.130 0.00 0.00 37.22 3.02
47 48 5.504010 GCTTTGAGATTCACACTCGTTTCAA 60.504 40.000 0.00 0.00 37.22 2.69
48 49 4.024893 GCTTTGAGATTCACACTCGTTTCA 60.025 41.667 0.00 0.00 37.22 2.69
49 50 4.212214 AGCTTTGAGATTCACACTCGTTTC 59.788 41.667 0.00 0.00 37.22 2.78
50 51 4.130118 AGCTTTGAGATTCACACTCGTTT 58.870 39.130 0.00 0.00 37.22 3.60
51 52 3.733337 AGCTTTGAGATTCACACTCGTT 58.267 40.909 0.00 0.00 37.22 3.85
52 53 3.393089 AGCTTTGAGATTCACACTCGT 57.607 42.857 0.00 0.00 37.22 4.18
53 54 4.739046 AAAGCTTTGAGATTCACACTCG 57.261 40.909 11.80 0.00 37.22 4.18
54 55 9.713740 CAATATAAAGCTTTGAGATTCACACTC 57.286 33.333 22.02 0.00 35.26 3.51
55 56 9.453572 TCAATATAAAGCTTTGAGATTCACACT 57.546 29.630 22.02 0.00 0.00 3.55
76 77 9.542462 CGTCATACCCTTTCTTATTCTTCAATA 57.458 33.333 0.00 0.00 0.00 1.90
77 78 7.499232 CCGTCATACCCTTTCTTATTCTTCAAT 59.501 37.037 0.00 0.00 0.00 2.57
78 79 6.821665 CCGTCATACCCTTTCTTATTCTTCAA 59.178 38.462 0.00 0.00 0.00 2.69
79 80 6.155565 TCCGTCATACCCTTTCTTATTCTTCA 59.844 38.462 0.00 0.00 0.00 3.02
80 81 6.579865 TCCGTCATACCCTTTCTTATTCTTC 58.420 40.000 0.00 0.00 0.00 2.87
81 82 6.555463 TCCGTCATACCCTTTCTTATTCTT 57.445 37.500 0.00 0.00 0.00 2.52
82 83 6.555463 TTCCGTCATACCCTTTCTTATTCT 57.445 37.500 0.00 0.00 0.00 2.40
85 86 9.543231 TCTATATTCCGTCATACCCTTTCTTAT 57.457 33.333 0.00 0.00 0.00 1.73
86 87 8.945195 TCTATATTCCGTCATACCCTTTCTTA 57.055 34.615 0.00 0.00 0.00 2.10
87 88 7.850935 TCTATATTCCGTCATACCCTTTCTT 57.149 36.000 0.00 0.00 0.00 2.52
88 89 7.674348 TCATCTATATTCCGTCATACCCTTTCT 59.326 37.037 0.00 0.00 0.00 2.52
89 90 7.837863 TCATCTATATTCCGTCATACCCTTTC 58.162 38.462 0.00 0.00 0.00 2.62
90 91 7.674348 TCTCATCTATATTCCGTCATACCCTTT 59.326 37.037 0.00 0.00 0.00 3.11
91 92 7.122948 GTCTCATCTATATTCCGTCATACCCTT 59.877 40.741 0.00 0.00 0.00 3.95
92 93 6.603997 GTCTCATCTATATTCCGTCATACCCT 59.396 42.308 0.00 0.00 0.00 4.34
93 94 6.377429 TGTCTCATCTATATTCCGTCATACCC 59.623 42.308 0.00 0.00 0.00 3.69
94 95 7.392494 TGTCTCATCTATATTCCGTCATACC 57.608 40.000 0.00 0.00 0.00 2.73
95 96 7.918033 CCATGTCTCATCTATATTCCGTCATAC 59.082 40.741 0.00 0.00 0.00 2.39
96 97 7.834181 TCCATGTCTCATCTATATTCCGTCATA 59.166 37.037 0.00 0.00 0.00 2.15
97 98 6.665248 TCCATGTCTCATCTATATTCCGTCAT 59.335 38.462 0.00 0.00 0.00 3.06
98 99 6.010219 TCCATGTCTCATCTATATTCCGTCA 58.990 40.000 0.00 0.00 0.00 4.35
99 100 6.375736 TCTCCATGTCTCATCTATATTCCGTC 59.624 42.308 0.00 0.00 0.00 4.79
100 101 6.151985 GTCTCCATGTCTCATCTATATTCCGT 59.848 42.308 0.00 0.00 0.00 4.69
101 102 6.376864 AGTCTCCATGTCTCATCTATATTCCG 59.623 42.308 0.00 0.00 0.00 4.30
102 103 7.716799 AGTCTCCATGTCTCATCTATATTCC 57.283 40.000 0.00 0.00 0.00 3.01
103 104 9.023962 AGAAGTCTCCATGTCTCATCTATATTC 57.976 37.037 0.00 0.00 0.00 1.75
104 105 8.805175 CAGAAGTCTCCATGTCTCATCTATATT 58.195 37.037 0.00 0.00 0.00 1.28
105 106 7.396907 CCAGAAGTCTCCATGTCTCATCTATAT 59.603 40.741 0.00 0.00 0.00 0.86
106 107 6.718912 CCAGAAGTCTCCATGTCTCATCTATA 59.281 42.308 0.00 0.00 0.00 1.31
107 108 5.539574 CCAGAAGTCTCCATGTCTCATCTAT 59.460 44.000 0.00 0.00 0.00 1.98
108 109 4.892345 CCAGAAGTCTCCATGTCTCATCTA 59.108 45.833 0.00 0.00 0.00 1.98
109 110 3.705579 CCAGAAGTCTCCATGTCTCATCT 59.294 47.826 0.00 0.00 0.00 2.90
110 111 3.703556 TCCAGAAGTCTCCATGTCTCATC 59.296 47.826 0.00 0.00 0.00 2.92
111 112 3.717576 TCCAGAAGTCTCCATGTCTCAT 58.282 45.455 0.00 0.00 0.00 2.90
112 113 3.175438 TCCAGAAGTCTCCATGTCTCA 57.825 47.619 0.00 0.00 0.00 3.27
113 114 4.751767 AATCCAGAAGTCTCCATGTCTC 57.248 45.455 0.00 0.00 0.00 3.36
114 115 4.782156 AGAAATCCAGAAGTCTCCATGTCT 59.218 41.667 0.00 0.00 0.00 3.41
115 116 5.096443 AGAAATCCAGAAGTCTCCATGTC 57.904 43.478 0.00 0.00 0.00 3.06
116 117 4.782156 AGAGAAATCCAGAAGTCTCCATGT 59.218 41.667 7.13 0.00 37.77 3.21
117 118 5.117584 CAGAGAAATCCAGAAGTCTCCATG 58.882 45.833 7.13 0.00 37.77 3.66
118 119 4.782156 ACAGAGAAATCCAGAAGTCTCCAT 59.218 41.667 7.13 0.00 37.77 3.41
119 120 4.020751 CACAGAGAAATCCAGAAGTCTCCA 60.021 45.833 7.13 0.00 37.77 3.86
120 121 4.502962 CACAGAGAAATCCAGAAGTCTCC 58.497 47.826 7.13 0.00 37.77 3.71
121 122 4.020662 ACCACAGAGAAATCCAGAAGTCTC 60.021 45.833 0.00 0.00 37.39 3.36
122 123 3.906846 ACCACAGAGAAATCCAGAAGTCT 59.093 43.478 0.00 0.00 0.00 3.24
123 124 4.278975 ACCACAGAGAAATCCAGAAGTC 57.721 45.455 0.00 0.00 0.00 3.01
124 125 4.841246 ACTACCACAGAGAAATCCAGAAGT 59.159 41.667 0.00 0.00 0.00 3.01
125 126 5.413309 ACTACCACAGAGAAATCCAGAAG 57.587 43.478 0.00 0.00 0.00 2.85
126 127 7.331026 CAATACTACCACAGAGAAATCCAGAA 58.669 38.462 0.00 0.00 0.00 3.02
127 128 6.630413 GCAATACTACCACAGAGAAATCCAGA 60.630 42.308 0.00 0.00 0.00 3.86
128 129 5.525378 GCAATACTACCACAGAGAAATCCAG 59.475 44.000 0.00 0.00 0.00 3.86
129 130 5.428253 GCAATACTACCACAGAGAAATCCA 58.572 41.667 0.00 0.00 0.00 3.41
130 131 4.508124 CGCAATACTACCACAGAGAAATCC 59.492 45.833 0.00 0.00 0.00 3.01
131 132 5.348986 TCGCAATACTACCACAGAGAAATC 58.651 41.667 0.00 0.00 0.00 2.17
132 133 5.339008 TCGCAATACTACCACAGAGAAAT 57.661 39.130 0.00 0.00 0.00 2.17
133 134 4.794278 TCGCAATACTACCACAGAGAAA 57.206 40.909 0.00 0.00 0.00 2.52
134 135 4.794278 TTCGCAATACTACCACAGAGAA 57.206 40.909 0.00 0.00 0.00 2.87
135 136 5.109210 CAATTCGCAATACTACCACAGAGA 58.891 41.667 0.00 0.00 0.00 3.10
136 137 4.870426 ACAATTCGCAATACTACCACAGAG 59.130 41.667 0.00 0.00 0.00 3.35
137 138 4.827692 ACAATTCGCAATACTACCACAGA 58.172 39.130 0.00 0.00 0.00 3.41
138 139 5.121611 TGAACAATTCGCAATACTACCACAG 59.878 40.000 0.00 0.00 0.00 3.66
139 140 4.998033 TGAACAATTCGCAATACTACCACA 59.002 37.500 0.00 0.00 0.00 4.17
140 141 5.539582 TGAACAATTCGCAATACTACCAC 57.460 39.130 0.00 0.00 0.00 4.16
141 142 6.819146 TGTATGAACAATTCGCAATACTACCA 59.181 34.615 0.00 0.00 30.91 3.25
142 143 7.241663 TGTATGAACAATTCGCAATACTACC 57.758 36.000 0.00 0.00 30.91 3.18
143 144 8.335356 ACATGTATGAACAATTCGCAATACTAC 58.665 33.333 0.00 0.00 39.58 2.73
144 145 8.432110 ACATGTATGAACAATTCGCAATACTA 57.568 30.769 0.00 0.00 39.58 1.82
145 146 7.320443 ACATGTATGAACAATTCGCAATACT 57.680 32.000 0.00 0.00 39.58 2.12
146 147 9.106286 CATACATGTATGAACAATTCGCAATAC 57.894 33.333 33.21 0.00 44.22 1.89
147 148 7.802720 GCATACATGTATGAACAATTCGCAATA 59.197 33.333 38.21 2.52 44.22 1.90
148 149 6.638063 GCATACATGTATGAACAATTCGCAAT 59.362 34.615 38.21 5.51 44.22 3.56
149 150 5.970612 GCATACATGTATGAACAATTCGCAA 59.029 36.000 38.21 3.25 44.22 4.85
150 151 5.065731 TGCATACATGTATGAACAATTCGCA 59.934 36.000 38.21 25.98 44.22 5.10
151 152 5.509771 TGCATACATGTATGAACAATTCGC 58.490 37.500 38.21 24.15 44.22 4.70
152 153 7.697710 ACTTTGCATACATGTATGAACAATTCG 59.302 33.333 38.21 25.54 44.22 3.34
153 154 8.915871 ACTTTGCATACATGTATGAACAATTC 57.084 30.769 38.21 23.36 44.22 2.17
156 157 7.967854 GCTTACTTTGCATACATGTATGAACAA 59.032 33.333 38.21 30.36 44.22 2.83
157 158 7.336679 AGCTTACTTTGCATACATGTATGAACA 59.663 33.333 38.21 27.48 44.22 3.18
158 159 7.697691 AGCTTACTTTGCATACATGTATGAAC 58.302 34.615 38.21 25.67 44.22 3.18
159 160 7.864108 AGCTTACTTTGCATACATGTATGAA 57.136 32.000 38.21 30.41 44.22 2.57
160 161 7.864108 AAGCTTACTTTGCATACATGTATGA 57.136 32.000 38.21 24.46 38.06 2.15
175 176 3.997021 CAGTCGGATGTCAAAGCTTACTT 59.003 43.478 0.00 0.00 37.90 2.24
176 177 3.006967 ACAGTCGGATGTCAAAGCTTACT 59.993 43.478 0.00 0.00 0.00 2.24
177 178 3.123621 CACAGTCGGATGTCAAAGCTTAC 59.876 47.826 0.00 0.00 0.00 2.34
178 179 3.325870 CACAGTCGGATGTCAAAGCTTA 58.674 45.455 0.00 0.00 0.00 3.09
179 180 2.146342 CACAGTCGGATGTCAAAGCTT 58.854 47.619 0.00 0.00 0.00 3.74
180 181 1.800805 CACAGTCGGATGTCAAAGCT 58.199 50.000 0.00 0.00 0.00 3.74
181 182 0.166814 GCACAGTCGGATGTCAAAGC 59.833 55.000 0.00 0.00 0.00 3.51
182 183 0.798776 GGCACAGTCGGATGTCAAAG 59.201 55.000 0.00 0.00 0.00 2.77
183 184 0.107643 TGGCACAGTCGGATGTCAAA 59.892 50.000 0.00 0.00 0.00 2.69
184 185 1.751563 TGGCACAGTCGGATGTCAA 59.248 52.632 0.00 0.00 0.00 3.18
185 186 3.465701 TGGCACAGTCGGATGTCA 58.534 55.556 0.00 0.00 0.00 3.58
197 198 1.000060 TGCTTGCTTTCTTCATGGCAC 60.000 47.619 0.00 0.00 34.30 5.01
198 199 1.330234 TGCTTGCTTTCTTCATGGCA 58.670 45.000 0.00 0.00 0.00 4.92
199 200 2.268298 CATGCTTGCTTTCTTCATGGC 58.732 47.619 0.00 0.00 33.01 4.40
200 201 2.268298 GCATGCTTGCTTTCTTCATGG 58.732 47.619 16.80 0.00 45.77 3.66
212 213 1.277739 CGCTACATCGGCATGCTTG 59.722 57.895 18.92 14.92 32.57 4.01
213 214 2.537560 GCGCTACATCGGCATGCTT 61.538 57.895 18.92 0.00 32.57 3.91
214 215 2.969238 GCGCTACATCGGCATGCT 60.969 61.111 18.92 0.00 32.57 3.79
215 216 2.969238 AGCGCTACATCGGCATGC 60.969 61.111 8.99 9.90 32.57 4.06
216 217 2.601398 CCAGCGCTACATCGGCATG 61.601 63.158 10.99 0.00 35.92 4.06
217 218 2.280389 CCAGCGCTACATCGGCAT 60.280 61.111 10.99 0.00 0.00 4.40
218 219 4.529219 CCCAGCGCTACATCGGCA 62.529 66.667 10.99 0.00 0.00 5.69
222 223 2.111999 TATGGGCCCAGCGCTACATC 62.112 60.000 31.97 0.00 42.10 3.06
223 224 1.492133 ATATGGGCCCAGCGCTACAT 61.492 55.000 31.97 13.45 42.10 2.29
224 225 2.146724 ATATGGGCCCAGCGCTACA 61.147 57.895 31.97 2.97 42.10 2.74
225 226 1.672356 CATATGGGCCCAGCGCTAC 60.672 63.158 31.97 1.95 42.10 3.58
226 227 1.414866 TTCATATGGGCCCAGCGCTA 61.415 55.000 31.97 18.27 42.10 4.26
227 228 2.283143 TTTCATATGGGCCCAGCGCT 62.283 55.000 31.97 16.40 42.10 5.92
228 229 1.391157 TTTTCATATGGGCCCAGCGC 61.391 55.000 31.97 0.00 41.94 5.92
229 230 0.385390 GTTTTCATATGGGCCCAGCG 59.615 55.000 31.97 20.44 0.00 5.18
230 231 1.780503 AGTTTTCATATGGGCCCAGC 58.219 50.000 31.97 6.15 0.00 4.85
231 232 2.431782 CCAAGTTTTCATATGGGCCCAG 59.568 50.000 31.97 17.43 0.00 4.45
232 233 2.465813 CCAAGTTTTCATATGGGCCCA 58.534 47.619 30.92 30.92 0.00 5.36
248 249 1.002087 AGACCCTAGAAACACGCCAAG 59.998 52.381 0.00 0.00 0.00 3.61
259 260 1.569548 CCCTACCTGACAGACCCTAGA 59.430 57.143 3.32 0.00 0.00 2.43
268 269 1.061735 TCATATGGGCCCTACCTGACA 60.062 52.381 25.70 0.00 39.10 3.58
271 272 3.117512 AGTTTTCATATGGGCCCTACCTG 60.118 47.826 25.70 15.04 39.10 4.00
272 273 3.131252 AGTTTTCATATGGGCCCTACCT 58.869 45.455 25.70 7.68 39.10 3.08
297 298 5.525012 GGTACCCGACAAATCCTATTAACAC 59.475 44.000 0.00 0.00 0.00 3.32
298 299 5.673514 GGTACCCGACAAATCCTATTAACA 58.326 41.667 0.00 0.00 0.00 2.41
327 337 0.599558 TGAACGGACGTCCTCGATTT 59.400 50.000 30.92 15.85 40.62 2.17
328 338 0.815734 ATGAACGGACGTCCTCGATT 59.184 50.000 30.92 19.25 40.62 3.34
406 416 7.063308 CGTAAAGATACTGTTAAAGCCCGTTAA 59.937 37.037 0.00 0.00 0.00 2.01
411 421 5.870978 TGTCGTAAAGATACTGTTAAAGCCC 59.129 40.000 0.00 0.00 0.00 5.19
421 431 5.176223 CGGTTTGTTGTGTCGTAAAGATACT 59.824 40.000 0.00 0.00 40.99 2.12
425 435 3.306703 GTCGGTTTGTTGTGTCGTAAAGA 59.693 43.478 0.00 0.00 0.00 2.52
448 458 2.481854 TCGCGCCAAAACTACAAACTA 58.518 42.857 0.00 0.00 0.00 2.24
449 459 1.301423 TCGCGCCAAAACTACAAACT 58.699 45.000 0.00 0.00 0.00 2.66
474 484 1.313812 ACGACTAGGGTCTGCGAAGG 61.314 60.000 0.00 0.00 40.10 3.46
477 487 1.748122 GGACGACTAGGGTCTGCGA 60.748 63.158 13.73 0.00 40.10 5.10
531 541 3.444805 GTGCCTCCTCTCTCGCGT 61.445 66.667 5.77 0.00 0.00 6.01
535 545 2.766400 CCGTCGTGCCTCCTCTCTC 61.766 68.421 0.00 0.00 0.00 3.20
536 546 2.752238 CCGTCGTGCCTCCTCTCT 60.752 66.667 0.00 0.00 0.00 3.10
550 562 3.335534 GACGTGTTTCGCTGCCGT 61.336 61.111 0.00 0.00 44.19 5.68
589 601 2.282110 TGTGGTTGATGCCCGGTG 60.282 61.111 0.00 0.00 0.00 4.94
599 611 1.355971 CCGGATTAGACGTGTGGTTG 58.644 55.000 0.00 0.00 0.00 3.77
671 690 2.757980 AAATACCAACGGCGCAGGGT 62.758 55.000 20.19 19.69 37.43 4.34
672 691 1.988834 GAAATACCAACGGCGCAGGG 61.989 60.000 20.19 15.31 0.00 4.45
990 1017 2.443952 TCGTCCATCGGCCCTGAT 60.444 61.111 0.00 0.00 40.32 2.90
993 1020 3.771160 GTGTCGTCCATCGGCCCT 61.771 66.667 0.00 0.00 44.19 5.19
1241 1277 2.140792 CCTAGATCACCACCGGGGG 61.141 68.421 25.15 25.15 42.91 5.40
1248 1284 0.623324 CCCCCAACCCTAGATCACCA 60.623 60.000 0.00 0.00 0.00 4.17
1275 1311 2.814913 AATCACCGCCGGGACCTTTC 62.815 60.000 8.57 0.00 36.97 2.62
1416 1452 0.178767 CACCAGATCCGCCATTGAGA 59.821 55.000 0.00 0.00 0.00 3.27
1539 1575 2.176546 CCTGCCATTGCGTTGTCG 59.823 61.111 0.00 0.00 41.78 4.35
1541 1577 4.041917 CGCCTGCCATTGCGTTGT 62.042 61.111 1.06 0.00 45.43 3.32
1574 1610 2.436824 GCTTCGCCCTTGACCTCC 60.437 66.667 0.00 0.00 0.00 4.30
1575 1611 2.436824 GGCTTCGCCCTTGACCTC 60.437 66.667 0.00 0.00 44.06 3.85
1646 1682 0.472471 TTCTCCAACGGGCACTTCTT 59.528 50.000 0.00 0.00 0.00 2.52
1651 1687 1.883021 CCAATTCTCCAACGGGCAC 59.117 57.895 0.00 0.00 0.00 5.01
1652 1688 1.976474 GCCAATTCTCCAACGGGCA 60.976 57.895 0.00 0.00 41.02 5.36
1674 1725 3.728305 ATCAGGGGGAGGCTCAGGG 62.728 68.421 17.69 0.76 0.00 4.45
1679 1730 0.850883 TTCCAAATCAGGGGGAGGCT 60.851 55.000 0.00 0.00 31.19 4.58
1746 1797 4.971282 TCTCCCAGTGATAAACCATCATCT 59.029 41.667 0.00 0.00 45.37 2.90
1761 1812 1.882989 GCAGAAGCGTCTCTCCCAGT 61.883 60.000 0.00 0.00 28.78 4.00
1786 1837 1.334869 CACAACTCTGCTGGTTTCCAC 59.665 52.381 0.00 0.00 0.00 4.02
1797 1848 0.987294 ATCCACCCTCCACAACTCTG 59.013 55.000 0.00 0.00 0.00 3.35
1801 1852 2.467880 TCTAGATCCACCCTCCACAAC 58.532 52.381 0.00 0.00 0.00 3.32
1811 1862 6.279882 CCATCAGAAGAGTTTCTAGATCCAC 58.720 44.000 0.00 0.00 41.71 4.02
1981 2032 6.183360 GCATTTATATCCTCTGCCAAGGTTTT 60.183 38.462 1.74 0.00 37.69 2.43
2007 2058 4.691860 ATCTTGAGAAAAACCTGCATCG 57.308 40.909 0.00 0.00 0.00 3.84
2082 2133 3.073946 TCCTTCTAACAGGTTTCTTGGGG 59.926 47.826 0.00 0.00 35.15 4.96
2214 2265 1.929836 GAGGAATTAGACTGCACAGCG 59.070 52.381 0.00 0.00 0.00 5.18
2215 2266 1.929836 CGAGGAATTAGACTGCACAGC 59.070 52.381 0.00 0.00 0.00 4.40
2410 2461 1.599071 CGCTGCCACGTCAATGATATT 59.401 47.619 0.00 0.00 0.00 1.28
2430 2481 3.431207 CCATGTCCTCAAAATTGGATGGC 60.431 47.826 0.00 0.00 34.58 4.40
2520 2571 3.064773 TCCCAATCATCATCTCCCTCA 57.935 47.619 0.00 0.00 0.00 3.86
2648 2702 1.949525 CACTTACAGCAGCAACACCTT 59.050 47.619 0.00 0.00 0.00 3.50
2821 2875 7.037438 GCATGGTGAAGTCAATTTATTGTCAT 58.963 34.615 0.00 0.00 38.84 3.06
2838 2892 4.036262 GGTAAATCGCATAAAGCATGGTGA 59.964 41.667 0.00 0.00 46.13 4.02
2880 2934 7.672983 TGTTCCTGAAGTGAATACAGAAATC 57.327 36.000 0.00 0.00 34.07 2.17
3058 3112 4.928661 AATAACACAGATGTCACGAAGC 57.071 40.909 0.00 0.00 38.45 3.86
3145 3199 6.430000 GCAAGTCTTCAAGAAGGTACCATAAA 59.570 38.462 15.94 0.00 38.88 1.40
3151 3205 3.748568 CCAGCAAGTCTTCAAGAAGGTAC 59.251 47.826 9.73 2.35 38.88 3.34
3183 3237 8.889849 AACGAATAAAAGGTTCACATATTTCG 57.110 30.769 0.00 0.00 0.00 3.46
3197 3251 9.177304 GAAACTGGTAAAAGGAACGAATAAAAG 57.823 33.333 0.00 0.00 0.00 2.27
3206 3260 7.275999 CGAGATCTAGAAACTGGTAAAAGGAAC 59.724 40.741 0.00 0.00 0.00 3.62
3400 3458 1.476110 CCACAACCTCGGAACAAGGAA 60.476 52.381 0.00 0.00 0.00 3.36
3403 3461 1.873591 CTTCCACAACCTCGGAACAAG 59.126 52.381 0.00 0.00 36.36 3.16
3410 3468 0.320374 TGGCTACTTCCACAACCTCG 59.680 55.000 0.00 0.00 0.00 4.63
3457 3515 1.202651 CGTCACCTTCAACCCTGACTT 60.203 52.381 0.00 0.00 32.44 3.01
3477 3535 4.193826 TCTGGAGAGATACAGCAACAAC 57.806 45.455 0.00 0.00 34.76 3.32
3507 3565 3.319122 GGTCCCAAAGCACCATAATCATC 59.681 47.826 0.00 0.00 32.33 2.92
3572 3630 0.250684 TCAACTCTTGGGCATCGCAA 60.251 50.000 0.00 0.00 35.16 4.85
3668 3726 7.287005 ACTGAAGTAATATTGATCGGTGGTAGA 59.713 37.037 0.00 0.00 0.00 2.59
3796 3854 5.292589 CCCACAATGATTATCTTTTTGCAGC 59.707 40.000 0.00 0.00 0.00 5.25
3893 3951 1.136305 CGACCACCAATCCTATCACGT 59.864 52.381 0.00 0.00 0.00 4.49
3926 3984 1.659098 GGAACTGAAAGCGATGTACGG 59.341 52.381 0.00 0.00 42.83 4.02
4229 4287 4.859304 TGCACGTTTCTTCCTAAGAGTA 57.141 40.909 0.00 0.00 39.03 2.59
4251 4309 3.221771 CCACAGAAGAAACAACATGGGA 58.778 45.455 0.00 0.00 0.00 4.37
4258 4316 4.163441 TCATGTCCCACAGAAGAAACAA 57.837 40.909 0.00 0.00 0.00 2.83
4260 4318 3.441572 CCATCATGTCCCACAGAAGAAAC 59.558 47.826 0.00 0.00 0.00 2.78
4299 4357 4.603094 TGTCTACACCTCCTCTATTGGA 57.397 45.455 0.00 0.00 34.52 3.53
4300 4358 5.878406 AATGTCTACACCTCCTCTATTGG 57.122 43.478 0.00 0.00 0.00 3.16
4303 4361 5.529289 TGGAAATGTCTACACCTCCTCTAT 58.471 41.667 11.58 0.00 33.39 1.98
4315 4373 6.096141 TGTTGAAGCACTTTTGGAAATGTCTA 59.904 34.615 0.00 0.00 0.00 2.59
4330 4388 5.391416 GCTATCTCCTTTTCTGTTGAAGCAC 60.391 44.000 0.00 0.00 33.28 4.40
4374 4432 4.151883 AGAGGGCTGAGAACATCTATCTC 58.848 47.826 0.00 0.00 42.94 2.75
4439 4497 1.443194 GAGCATTGCAGCACAACCG 60.443 57.895 11.91 0.00 42.27 4.44
4475 4533 4.579869 ACACATCATCTTGGTTCCAGTAC 58.420 43.478 0.00 0.00 0.00 2.73
5078 5136 2.299867 GCCCCAATTTGTGACAACTGAT 59.700 45.455 0.00 0.00 0.00 2.90
5153 5211 6.691508 CCGTCCTATGATGTCATAATCTTGA 58.308 40.000 4.45 0.00 38.26 3.02
5345 5403 4.193826 TCTTTCACTATCTGACTGCACC 57.806 45.455 0.00 0.00 0.00 5.01
5987 6149 3.205784 AGCTCTATTCTCATTGGTGCC 57.794 47.619 0.00 0.00 0.00 5.01
6401 6568 0.756294 TTCTGGGAACGAAGTGAGCA 59.244 50.000 0.00 0.00 45.00 4.26
6435 6602 0.776810 TTGATCAGCCTTGGGTTCCA 59.223 50.000 0.00 0.00 0.00 3.53
6594 6762 7.778083 ACGTATCTCCATCAATTACACTTGTA 58.222 34.615 0.00 0.00 0.00 2.41
6907 7086 4.038402 CCAAATGATGGTATCTTTGGGAGC 59.962 45.833 16.49 0.00 44.85 4.70
7336 7515 2.579410 TTTGGCTACCTGAACCTTCC 57.421 50.000 0.00 0.00 0.00 3.46
7622 7963 6.603201 CAGTTCAACACCCCTGACATTATTAT 59.397 38.462 0.00 0.00 0.00 1.28
7623 7964 5.943416 CAGTTCAACACCCCTGACATTATTA 59.057 40.000 0.00 0.00 0.00 0.98
7624 7965 4.766891 CAGTTCAACACCCCTGACATTATT 59.233 41.667 0.00 0.00 0.00 1.40
7848 8198 2.106566 GTCATCAGCTTCTCTCCCTCA 58.893 52.381 0.00 0.00 0.00 3.86
8317 8690 7.383102 ACTTCAATACAAGGATGAATGTGTC 57.617 36.000 0.00 0.00 33.03 3.67
8318 8691 7.448161 TCAACTTCAATACAAGGATGAATGTGT 59.552 33.333 0.00 0.00 33.03 3.72
8419 8799 3.251487 TCATCACACAAGTTCACTGCATG 59.749 43.478 0.00 0.00 0.00 4.06
8628 9009 3.263489 TGGTCTGTACAACAAACGGAA 57.737 42.857 0.00 0.00 34.13 4.30
8632 9013 4.392138 GGAGCTATGGTCTGTACAACAAAC 59.608 45.833 0.00 0.00 0.00 2.93
8935 9318 6.829811 AGGCAAAAGCATAATAATGGCAAAAT 59.170 30.769 0.00 0.00 35.99 1.82
9037 9422 2.999331 ACACAGGCACAACTTACAAGT 58.001 42.857 0.00 0.00 42.04 3.16
9100 9485 5.473066 AGAAATGACAACAATGGGAAAGG 57.527 39.130 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.