Multiple sequence alignment - TraesCS6A01G405400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G405400 chr6A 100.000 7784 0 0 1 7784 611417026 611409243 0.000000e+00 14375
1 TraesCS6A01G405400 chr6A 97.938 97 2 0 2795 2891 348998489 348998585 1.340000e-37 169
2 TraesCS6A01G405400 chr6A 94.444 108 5 1 5733 5840 598703299 598703405 1.740000e-36 165
3 TraesCS6A01G405400 chr6D 92.800 3000 134 26 42 3005 464839288 464836335 0.000000e+00 4268
4 TraesCS6A01G405400 chr6D 94.199 2241 93 13 3516 5739 464835818 464833598 0.000000e+00 3384
5 TraesCS6A01G405400 chr6D 90.863 591 21 15 6229 6802 464833169 464832595 0.000000e+00 761
6 TraesCS6A01G405400 chr6D 89.848 394 33 4 5830 6220 464833604 464833215 4.190000e-137 499
7 TraesCS6A01G405400 chr6D 94.937 79 3 1 5612 5690 349413738 349413661 1.060000e-23 122
8 TraesCS6A01G405400 chr6B 94.594 2756 118 14 3007 5736 708784802 708782052 0.000000e+00 4235
9 TraesCS6A01G405400 chr6B 91.267 3023 170 34 21 3005 708787921 708784955 0.000000e+00 4034
10 TraesCS6A01G405400 chr6B 86.819 789 27 22 6218 6932 708781624 708780839 0.000000e+00 809
11 TraesCS6A01G405400 chr6B 90.152 396 34 4 5830 6220 708782055 708781660 1.940000e-140 510
12 TraesCS6A01G405400 chr6B 94.495 109 4 2 5735 5842 415702911 415703018 4.830000e-37 167
13 TraesCS6A01G405400 chr7A 94.938 731 32 2 3007 3732 308567155 308566425 0.000000e+00 1140
14 TraesCS6A01G405400 chr7A 95.455 264 10 2 3423 3685 690461182 690461444 3.360000e-113 420
15 TraesCS6A01G405400 chr7A 97.938 97 2 0 2795 2891 308567314 308567218 1.340000e-37 169
16 TraesCS6A01G405400 chr4A 95.029 684 27 3 3007 3685 528617777 528618458 0.000000e+00 1068
17 TraesCS6A01G405400 chr4A 94.883 684 28 3 3007 3685 528658196 528658877 0.000000e+00 1062
18 TraesCS6A01G405400 chr4A 95.968 496 18 2 3191 3685 339494955 339494461 0.000000e+00 804
19 TraesCS6A01G405400 chr4A 91.736 121 7 3 5723 5841 669572644 669572763 1.740000e-36 165
20 TraesCS6A01G405400 chr4A 96.203 79 2 1 5612 5690 660178282 660178359 2.280000e-25 128
21 TraesCS6A01G405400 chr4A 84.615 117 17 1 6230 6346 603451635 603451520 1.770000e-21 115
22 TraesCS6A01G405400 chr4A 96.923 65 2 0 2795 2859 528617661 528617725 8.260000e-20 110
23 TraesCS6A01G405400 chr4A 93.846 65 4 0 2795 2859 528658080 528658144 1.790000e-16 99
24 TraesCS6A01G405400 chr3D 95.843 433 14 1 3007 3435 5569490 5569058 0.000000e+00 697
25 TraesCS6A01G405400 chr3D 97.938 97 2 0 5735 5831 19269718 19269814 1.340000e-37 169
26 TraesCS6A01G405400 chr2D 95.843 433 14 1 3007 3435 151644867 151644435 0.000000e+00 697
27 TraesCS6A01G405400 chr2D 92.562 121 6 2 5721 5839 211559267 211559148 3.730000e-38 171
28 TraesCS6A01G405400 chr7D 95.612 433 15 1 3007 3435 581645824 581646256 0.000000e+00 691
29 TraesCS6A01G405400 chr7D 91.736 121 10 0 2537 2657 31591317 31591197 1.340000e-37 169
30 TraesCS6A01G405400 chr7D 94.495 109 6 0 5735 5843 407261301 407261193 1.340000e-37 169
31 TraesCS6A01G405400 chr4D 95.612 433 15 1 3007 3435 381523639 381523207 0.000000e+00 691
32 TraesCS6A01G405400 chr4D 86.325 117 15 1 6230 6346 1370485 1370370 8.200000e-25 126
33 TraesCS6A01G405400 chr2B 77.806 775 102 29 7068 7784 708197931 708197169 1.560000e-111 414
34 TraesCS6A01G405400 chr2B 95.370 108 3 2 5735 5842 25123326 25123221 3.730000e-38 171
35 TraesCS6A01G405400 chr5D 84.058 207 27 3 7191 7394 563205520 563205317 2.220000e-45 195
36 TraesCS6A01G405400 chr7B 100.000 98 0 0 5735 5832 190338588 190338685 1.730000e-41 182
37 TraesCS6A01G405400 chr7B 92.174 115 5 3 5730 5844 154681504 154681614 8.080000e-35 159
38 TraesCS6A01G405400 chr7B 90.678 118 11 0 2538 2655 320319139 320319256 2.910000e-34 158
39 TraesCS6A01G405400 chr4B 93.162 117 7 1 5717 5832 39731770 39731886 3.730000e-38 171
40 TraesCS6A01G405400 chr4B 94.937 79 3 1 5612 5690 68884000 68884077 1.060000e-23 122
41 TraesCS6A01G405400 chr4B 85.470 117 16 1 6230 6346 1784757 1784872 3.810000e-23 121
42 TraesCS6A01G405400 chr5B 92.373 118 7 2 5720 5836 56123341 56123457 4.830000e-37 167
43 TraesCS6A01G405400 chr5B 88.889 126 14 0 2534 2659 653004899 653004774 1.050000e-33 156
44 TraesCS6A01G405400 chr5A 91.736 121 8 2 5718 5836 405160103 405160223 4.830000e-37 167
45 TraesCS6A01G405400 chr3B 95.283 106 4 1 5735 5839 714106404 714106509 4.830000e-37 167
46 TraesCS6A01G405400 chr3B 90.984 122 10 1 2538 2659 201343458 201343578 6.250000e-36 163
47 TraesCS6A01G405400 chr3B 89.431 123 11 2 2537 2658 679712771 679712650 3.760000e-33 154
48 TraesCS6A01G405400 chr2A 91.736 121 8 2 5718 5836 704122477 704122597 4.830000e-37 167
49 TraesCS6A01G405400 chr2A 90.083 121 12 0 2534 2654 573658303 573658423 2.910000e-34 158
50 TraesCS6A01G405400 chr3A 89.231 130 11 3 5707 5836 486785274 486785400 8.080000e-35 159
51 TraesCS6A01G405400 chr1D 89.516 124 12 1 2533 2656 453060037 453059915 1.050000e-33 156
52 TraesCS6A01G405400 chr1D 94.937 79 3 1 5612 5690 323481288 323481211 1.060000e-23 122
53 TraesCS6A01G405400 chr1D 94.937 79 3 1 5612 5690 464542324 464542247 1.060000e-23 122
54 TraesCS6A01G405400 chrUn 94.937 79 3 1 5612 5690 74170091 74170168 1.060000e-23 122
55 TraesCS6A01G405400 chrUn 94.937 79 3 1 5612 5690 108442681 108442758 1.060000e-23 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G405400 chr6A 611409243 611417026 7783 True 14375.0 14375 100.0000 1 7784 1 chr6A.!!$R1 7783
1 TraesCS6A01G405400 chr6D 464832595 464839288 6693 True 2228.0 4268 91.9275 42 6802 4 chr6D.!!$R2 6760
2 TraesCS6A01G405400 chr6B 708780839 708787921 7082 True 2397.0 4235 90.7080 21 6932 4 chr6B.!!$R1 6911
3 TraesCS6A01G405400 chr7A 308566425 308567314 889 True 654.5 1140 96.4380 2795 3732 2 chr7A.!!$R1 937
4 TraesCS6A01G405400 chr4A 528617661 528618458 797 False 589.0 1068 95.9760 2795 3685 2 chr4A.!!$F3 890
5 TraesCS6A01G405400 chr4A 528658080 528658877 797 False 580.5 1062 94.3645 2795 3685 2 chr4A.!!$F4 890
6 TraesCS6A01G405400 chr2B 708197169 708197931 762 True 414.0 414 77.8060 7068 7784 1 chr2B.!!$R2 716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
654 661 0.028642 AGCCCCCATCACCCTAGAAT 60.029 55.000 0.00 0.00 0.00 2.40 F
719 737 0.033781 TGTGAAAGGCAAGGCAATGC 59.966 50.000 0.00 0.00 45.67 3.56 F
942 964 0.100503 CGTCCAATCCGCCCAAAATC 59.899 55.000 0.00 0.00 0.00 2.17 F
2565 2605 1.202031 CCGTCTGAAAATACTTGCCGC 60.202 52.381 0.00 0.00 0.00 6.53 F
3250 3454 0.745845 CGGGAGGAAGAACCATGCTG 60.746 60.000 0.00 0.00 42.04 4.41 F
4188 4414 0.035630 GCCTGTCTGATGCTCCTGTT 60.036 55.000 0.00 0.00 0.00 3.16 F
4238 4464 0.039708 GAAACTGAACAGGCAGCTGC 60.040 55.000 30.88 30.88 39.51 5.25 F
5681 5928 0.178992 TTGTTCACCCTGCTCCTTGG 60.179 55.000 0.00 0.00 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2072 2109 1.135972 CAGACAATTTTGAGACCGGCG 60.136 52.381 0.0 0.00 0.00 6.46 R
2304 2344 4.080919 AGCTTACAATGACTATGCCAGACA 60.081 41.667 0.0 0.00 33.43 3.41 R
2740 2782 2.247111 TGAGGCATTCAATAATGGGGGT 59.753 45.455 0.0 0.00 42.39 4.95 R
4056 4282 0.475906 AGGCAAGTGATAGGGGATGC 59.524 55.000 0.0 0.00 0.00 3.91 R
5229 5459 0.250727 TTGGGGCAGAACACTAGTGC 60.251 55.000 22.9 8.27 36.42 4.40 R
6077 6328 0.119155 TCCTCACCTGGTCCCATCTT 59.881 55.000 0.0 0.00 0.00 2.40 R
6220 6472 0.518636 CTGCAACCACCATCAGAACG 59.481 55.000 0.0 0.00 0.00 3.95 R
7090 7457 0.106918 AAGGAACGGCTTTGTGTGGA 60.107 50.000 0.0 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 5.528690 CCCAACTATCATGGTCTGTATTGTG 59.471 44.000 0.00 0.00 36.14 3.33
38 39 4.708177 ACTATCATGGTCTGTATTGTGGC 58.292 43.478 0.00 0.00 0.00 5.01
62 63 6.554334 TGATACCACTTAGAGTGCAAAAAC 57.446 37.500 2.59 0.00 44.63 2.43
63 64 6.058833 TGATACCACTTAGAGTGCAAAAACA 58.941 36.000 2.59 0.00 44.63 2.83
64 65 6.544197 TGATACCACTTAGAGTGCAAAAACAA 59.456 34.615 2.59 0.00 44.63 2.83
65 66 4.993905 ACCACTTAGAGTGCAAAAACAAC 58.006 39.130 2.59 0.00 44.63 3.32
68 69 6.042143 CCACTTAGAGTGCAAAAACAACAAT 58.958 36.000 2.59 0.00 44.63 2.71
80 81 8.677300 TGCAAAAACAACAATTTAAGGCATTTA 58.323 25.926 0.00 0.00 0.00 1.40
81 82 9.168353 GCAAAAACAACAATTTAAGGCATTTAG 57.832 29.630 0.00 0.00 0.00 1.85
97 98 5.163301 GGCATTTAGAGGGTAGAACATCTCA 60.163 44.000 0.00 0.00 0.00 3.27
105 106 6.157645 AGAGGGTAGAACATCTCATGTGAAAT 59.842 38.462 0.90 0.00 44.07 2.17
109 110 6.037610 GGTAGAACATCTCATGTGAAATCCAC 59.962 42.308 0.90 0.93 44.07 4.02
115 116 4.900684 TCTCATGTGAAATCCACCGTAAA 58.099 39.130 0.00 0.00 45.09 2.01
119 120 7.608376 TCTCATGTGAAATCCACCGTAAAATTA 59.392 33.333 0.00 0.00 45.09 1.40
128 129 9.628746 AAATCCACCGTAAAATTACAACAATAC 57.371 29.630 4.37 0.00 33.28 1.89
129 130 7.741027 TCCACCGTAAAATTACAACAATACA 57.259 32.000 4.37 0.00 33.28 2.29
130 131 8.338072 TCCACCGTAAAATTACAACAATACAT 57.662 30.769 4.37 0.00 33.28 2.29
139 140 9.921637 AAAATTACAACAATACATACCCAACTG 57.078 29.630 0.00 0.00 0.00 3.16
142 143 5.007682 ACAACAATACATACCCAACTGTCC 58.992 41.667 0.00 0.00 0.00 4.02
145 146 4.534500 ACAATACATACCCAACTGTCCTGA 59.466 41.667 0.00 0.00 0.00 3.86
149 150 4.620723 ACATACCCAACTGTCCTGATCTA 58.379 43.478 0.00 0.00 0.00 1.98
160 161 4.973168 TGTCCTGATCTATATTGCAACCC 58.027 43.478 0.00 0.00 0.00 4.11
171 172 3.971468 ATTGCAACCCATACCACCTAT 57.029 42.857 0.00 0.00 0.00 2.57
215 218 5.423886 TGCCATCTAAACGACATAACATCA 58.576 37.500 0.00 0.00 0.00 3.07
216 219 6.054941 TGCCATCTAAACGACATAACATCAT 58.945 36.000 0.00 0.00 0.00 2.45
228 231 6.577427 CGACATAACATCATGCATGAAATCTG 59.423 38.462 31.79 25.78 40.69 2.90
253 256 7.654116 TGTGACAAGATTACAAAGATACGAACA 59.346 33.333 0.00 0.00 0.00 3.18
261 264 3.498397 ACAAAGATACGAACAAGGCTGTG 59.502 43.478 0.00 0.00 35.37 3.66
301 304 5.945310 TCGGTACTACACCCAGTATAGATT 58.055 41.667 0.00 0.00 45.52 2.40
302 305 7.078249 TCGGTACTACACCCAGTATAGATTA 57.922 40.000 0.00 0.00 45.52 1.75
325 328 8.740123 TTATAGAATTCACGGCATTTAAAGGA 57.260 30.769 8.44 0.00 0.00 3.36
372 375 3.667695 CGCCATAATTACGACGATACGGA 60.668 47.826 0.00 0.00 37.61 4.69
386 389 1.663379 TACGGACCGAGCTGTCATGG 61.663 60.000 23.38 0.00 36.97 3.66
426 429 9.661954 AGATACCACCCATAATCGATATTCTAT 57.338 33.333 0.00 0.00 0.00 1.98
483 486 4.196193 CCAAATCTACGGCAGGATTACAA 58.804 43.478 0.00 0.00 32.65 2.41
533 539 1.135024 GGCAACCGATACAACCTACGA 60.135 52.381 0.00 0.00 0.00 3.43
642 648 1.343681 GGACCCGATATATAGCCCCCA 60.344 57.143 0.00 0.00 0.00 4.96
643 649 2.690840 GACCCGATATATAGCCCCCAT 58.309 52.381 0.00 0.00 0.00 4.00
644 650 2.633481 GACCCGATATATAGCCCCCATC 59.367 54.545 0.00 0.00 0.00 3.51
654 661 0.028642 AGCCCCCATCACCCTAGAAT 60.029 55.000 0.00 0.00 0.00 2.40
655 662 1.225694 AGCCCCCATCACCCTAGAATA 59.774 52.381 0.00 0.00 0.00 1.75
656 663 2.062636 GCCCCCATCACCCTAGAATAA 58.937 52.381 0.00 0.00 0.00 1.40
696 714 2.084546 GCCACACAAAACCTAGGCTAG 58.915 52.381 14.77 14.77 39.02 3.42
708 726 5.104259 ACCTAGGCTAGAATTGTGAAAGG 57.896 43.478 22.99 6.56 0.00 3.11
709 727 3.879892 CCTAGGCTAGAATTGTGAAAGGC 59.120 47.826 22.99 0.00 0.00 4.35
710 728 3.439857 AGGCTAGAATTGTGAAAGGCA 57.560 42.857 0.00 0.00 35.36 4.75
711 729 3.766545 AGGCTAGAATTGTGAAAGGCAA 58.233 40.909 0.00 0.00 35.36 4.52
712 730 3.760684 AGGCTAGAATTGTGAAAGGCAAG 59.239 43.478 0.00 0.00 35.36 4.01
713 731 3.119352 GGCTAGAATTGTGAAAGGCAAGG 60.119 47.826 0.00 0.00 33.30 3.61
714 732 3.674410 GCTAGAATTGTGAAAGGCAAGGC 60.674 47.826 0.00 0.00 0.00 4.35
715 733 2.318908 AGAATTGTGAAAGGCAAGGCA 58.681 42.857 0.00 0.00 0.00 4.75
716 734 2.699846 AGAATTGTGAAAGGCAAGGCAA 59.300 40.909 0.00 0.00 0.00 4.52
717 735 3.325716 AGAATTGTGAAAGGCAAGGCAAT 59.674 39.130 0.00 0.00 0.00 3.56
718 736 2.529780 TTGTGAAAGGCAAGGCAATG 57.470 45.000 0.00 0.00 0.00 2.82
719 737 0.033781 TGTGAAAGGCAAGGCAATGC 59.966 50.000 0.00 0.00 45.67 3.56
752 770 1.843376 AGTGGTGGGTGGTGAGAGG 60.843 63.158 0.00 0.00 0.00 3.69
753 771 2.529136 TGGTGGGTGGTGAGAGGG 60.529 66.667 0.00 0.00 0.00 4.30
754 772 2.203938 GGTGGGTGGTGAGAGGGA 60.204 66.667 0.00 0.00 0.00 4.20
755 773 2.294078 GGTGGGTGGTGAGAGGGAG 61.294 68.421 0.00 0.00 0.00 4.30
756 774 2.122729 TGGGTGGTGAGAGGGAGG 59.877 66.667 0.00 0.00 0.00 4.30
757 775 2.689034 GGGTGGTGAGAGGGAGGG 60.689 72.222 0.00 0.00 0.00 4.30
758 776 2.450243 GGTGGTGAGAGGGAGGGA 59.550 66.667 0.00 0.00 0.00 4.20
759 777 1.687493 GGTGGTGAGAGGGAGGGAG 60.687 68.421 0.00 0.00 0.00 4.30
760 778 1.388531 GTGGTGAGAGGGAGGGAGA 59.611 63.158 0.00 0.00 0.00 3.71
761 779 0.686112 GTGGTGAGAGGGAGGGAGAG 60.686 65.000 0.00 0.00 0.00 3.20
762 780 0.851332 TGGTGAGAGGGAGGGAGAGA 60.851 60.000 0.00 0.00 0.00 3.10
763 781 0.106217 GGTGAGAGGGAGGGAGAGAG 60.106 65.000 0.00 0.00 0.00 3.20
764 782 0.106217 GTGAGAGGGAGGGAGAGAGG 60.106 65.000 0.00 0.00 0.00 3.69
942 964 0.100503 CGTCCAATCCGCCCAAAATC 59.899 55.000 0.00 0.00 0.00 2.17
1052 1074 3.225940 GGGGAGGATTGATTGGTTGATC 58.774 50.000 0.00 0.00 0.00 2.92
1053 1075 2.880890 GGGAGGATTGATTGGTTGATCG 59.119 50.000 0.00 0.00 0.00 3.69
1054 1076 3.433598 GGGAGGATTGATTGGTTGATCGA 60.434 47.826 0.00 0.00 0.00 3.59
1055 1077 4.392940 GGAGGATTGATTGGTTGATCGAT 58.607 43.478 0.00 0.00 33.73 3.59
1063 1085 6.135290 TGATTGGTTGATCGATTGATTTCC 57.865 37.500 0.00 1.66 34.09 3.13
1072 1094 3.016736 TCGATTGATTTCCAAAGGAGGC 58.983 45.455 0.00 0.00 38.43 4.70
1700 1737 4.394712 CGCCTCACCACCTCCACC 62.395 72.222 0.00 0.00 0.00 4.61
1703 1740 1.990060 CCTCACCACCTCCACCGAT 60.990 63.158 0.00 0.00 0.00 4.18
1790 1827 3.007973 GCTCGTCAGGGAGTGGGTC 62.008 68.421 0.00 0.00 36.41 4.46
1871 1908 2.043852 GAGAGGGACAGGCGAGGA 60.044 66.667 0.00 0.00 0.00 3.71
1985 2022 3.630312 GGTACCACATTGTGTCACAGTTT 59.370 43.478 15.34 0.00 0.00 2.66
2072 2109 3.798202 AGTTATCAGAAATGTCGAGGGC 58.202 45.455 0.00 0.00 0.00 5.19
2131 2168 5.339282 GCTTAGGGTAAGGTTCTTGAGGAAT 60.339 44.000 0.00 0.00 35.00 3.01
2304 2344 6.592994 CGTATCTCATCCATGAATGCAAGTAT 59.407 38.462 0.00 0.00 36.18 2.12
2321 2361 5.277683 GCAAGTATGTCTGGCATAGTCATTG 60.278 44.000 9.86 9.94 41.51 2.82
2326 2366 4.191544 TGTCTGGCATAGTCATTGTAAGC 58.808 43.478 0.00 0.00 0.00 3.09
2363 2403 5.243730 GGAATTCTTCTCCACCATGAAAACA 59.756 40.000 5.23 0.00 32.77 2.83
2486 2526 6.097839 GGTCCTTTACTTTTCTTGGGTTTCTT 59.902 38.462 0.00 0.00 0.00 2.52
2550 2590 2.249309 ATTTGGTACTCCCTCCGTCT 57.751 50.000 0.00 0.00 0.00 4.18
2562 2602 2.678336 CCCTCCGTCTGAAAATACTTGC 59.322 50.000 0.00 0.00 0.00 4.01
2565 2605 1.202031 CCGTCTGAAAATACTTGCCGC 60.202 52.381 0.00 0.00 0.00 6.53
2640 2680 4.436852 CCATTTCCGTGACAAGTAATTCCG 60.437 45.833 0.00 0.00 0.00 4.30
2643 2683 2.498481 TCCGTGACAAGTAATTCCGGAT 59.502 45.455 4.15 0.00 38.02 4.18
2646 2686 3.606687 GTGACAAGTAATTCCGGATGGT 58.393 45.455 4.15 0.00 36.30 3.55
2684 2724 3.489180 TCGCTACTAGTTGTCTTGAGC 57.511 47.619 0.00 0.50 0.00 4.26
2735 2777 2.498644 TCCAAACGAACATATGGGCA 57.501 45.000 7.80 0.00 33.66 5.36
2740 2782 5.419155 TCCAAACGAACATATGGGCATAAAA 59.581 36.000 7.80 0.00 33.66 1.52
2769 2811 7.014518 CCCATTATTGAATGCCTCAGTGATTAA 59.985 37.037 0.00 0.00 41.09 1.40
2909 2954 9.703892 CATATTTTTGAAAACCCACACATCTAA 57.296 29.630 0.00 0.00 0.00 2.10
3005 3050 3.914364 GCATTTTGCTCTCGGTAGTTTTG 59.086 43.478 0.00 0.00 40.96 2.44
3051 3247 9.313118 ACACATAAATGTTTTTCTTTTGAGGTC 57.687 29.630 0.00 0.00 39.39 3.85
3106 3302 4.225267 CGGGGTATTGGGATAGAGCTTTAT 59.775 45.833 0.00 0.00 0.00 1.40
3113 3309 4.556697 TGGGATAGAGCTTTATCTCACCA 58.443 43.478 20.12 16.42 35.99 4.17
3204 3408 5.464168 AGTGCATCTTGTATGTTTTTGAGC 58.536 37.500 0.00 0.00 0.00 4.26
3249 3453 1.604378 CGGGAGGAAGAACCATGCT 59.396 57.895 0.00 0.00 42.04 3.79
3250 3454 0.745845 CGGGAGGAAGAACCATGCTG 60.746 60.000 0.00 0.00 42.04 4.41
3535 3745 7.596494 TCTTTTGTTATCTGGAGCATTCAAAG 58.404 34.615 0.00 0.00 0.00 2.77
3578 3788 3.813724 GGACTGAAACTAGGTGAACCAAC 59.186 47.826 1.62 0.00 38.89 3.77
3741 3958 7.596494 AGATGGTACTGTGAAATGTTTTGATG 58.404 34.615 0.00 0.00 0.00 3.07
3794 4011 3.922171 AGGATCCTGAACTGAATCCAC 57.078 47.619 15.29 0.00 0.00 4.02
3809 4026 1.803334 TCCACGTGCTACATGTTTCC 58.197 50.000 10.91 0.00 30.47 3.13
3810 4027 1.346395 TCCACGTGCTACATGTTTCCT 59.654 47.619 10.91 0.00 30.47 3.36
3811 4028 2.151202 CCACGTGCTACATGTTTCCTT 58.849 47.619 10.91 0.00 30.47 3.36
3840 4060 4.566004 GTTGTGACACCAACTATCTGCTA 58.434 43.478 2.45 0.00 41.17 3.49
3849 4069 3.380637 CCAACTATCTGCTAGTACCGTGT 59.619 47.826 0.00 0.00 39.87 4.49
3867 4087 3.908382 CGTGTCTGCTCATTAAGTTTTGC 59.092 43.478 0.00 0.00 0.00 3.68
4008 4234 4.488879 GATTTCCTTGTTGATTGTGCTCC 58.511 43.478 0.00 0.00 0.00 4.70
4050 4276 3.315470 CCATCAATCAGAACAGCTCATGG 59.685 47.826 0.00 0.00 0.00 3.66
4056 4282 3.349927 TCAGAACAGCTCATGGAATTGG 58.650 45.455 0.00 0.00 0.00 3.16
4078 4304 3.635591 CATCCCCTATCACTTGCCTTTT 58.364 45.455 0.00 0.00 0.00 2.27
4087 4313 7.093771 CCCTATCACTTGCCTTTTGTTCTTATT 60.094 37.037 0.00 0.00 0.00 1.40
4188 4414 0.035630 GCCTGTCTGATGCTCCTGTT 60.036 55.000 0.00 0.00 0.00 3.16
4191 4417 0.397564 TGTCTGATGCTCCTGTTGCA 59.602 50.000 0.00 0.00 44.95 4.08
4201 4427 3.054878 GCTCCTGTTGCAGAAAATGTTG 58.945 45.455 0.00 0.00 32.44 3.33
4232 4458 4.458989 TGGTAATGATGAAACTGAACAGGC 59.541 41.667 6.76 0.00 0.00 4.85
4233 4459 4.458989 GGTAATGATGAAACTGAACAGGCA 59.541 41.667 6.76 2.50 0.00 4.75
4238 4464 0.039708 GAAACTGAACAGGCAGCTGC 60.040 55.000 30.88 30.88 39.51 5.25
4239 4465 0.466922 AAACTGAACAGGCAGCTGCT 60.467 50.000 35.82 18.48 39.51 4.24
4242 4468 1.575576 CTGAACAGGCAGCTGCTGTC 61.576 60.000 35.82 25.86 41.70 3.51
4281 4507 1.004277 GAGGATGTGGCCCAAACTACA 59.996 52.381 0.00 0.00 0.00 2.74
4473 4699 2.031870 GATAGGTGGCCCAATGAAACC 58.968 52.381 0.00 0.00 0.00 3.27
4479 4705 1.531739 GGCCCAATGAAACCGCAGAA 61.532 55.000 0.00 0.00 0.00 3.02
4500 4726 7.224522 AGAAAATTCTGACAGAAATTGGGAG 57.775 36.000 21.29 0.00 37.82 4.30
4746 4975 7.054124 TGAGGGAATTACTTAGCAGGTATTTG 58.946 38.462 0.00 0.00 0.00 2.32
4760 4990 6.151144 AGCAGGTATTTGTACTTCATTTCCAC 59.849 38.462 0.00 0.00 0.00 4.02
4768 4998 8.641499 TTTGTACTTCATTTCCACAATTTGTC 57.359 30.769 0.00 0.00 0.00 3.18
4848 5078 3.804873 GGCGAAGTGTATCCAATCTTCTC 59.195 47.826 0.00 0.00 35.55 2.87
4950 5180 1.153188 CGATACAGCCATGCCCACA 60.153 57.895 0.00 0.00 0.00 4.17
5001 5231 8.547967 AACTAGTAAGAAATGCTGAAAATCGA 57.452 30.769 0.00 0.00 0.00 3.59
5046 5276 0.179045 CTGCCCTTGTTATCCCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
5135 5365 2.435805 ACAGGGTACATCAGGTATGCTG 59.564 50.000 0.00 0.00 39.39 4.41
5154 5384 0.670854 GCCTTCTCACCTCACGTTCC 60.671 60.000 0.00 0.00 0.00 3.62
5229 5459 9.559732 TGTTTCTCCCATATGATGTAGTATTTG 57.440 33.333 3.65 0.00 0.00 2.32
5244 5474 4.003648 AGTATTTGCACTAGTGTTCTGCC 58.996 43.478 23.44 6.84 0.00 4.85
5680 5927 0.954452 GTTGTTCACCCTGCTCCTTG 59.046 55.000 0.00 0.00 0.00 3.61
5681 5928 0.178992 TTGTTCACCCTGCTCCTTGG 60.179 55.000 0.00 0.00 0.00 3.61
5725 5972 5.149977 GCTTCATAACTGTGCTGTTTTCTC 58.850 41.667 0.10 0.00 0.00 2.87
5730 5977 8.256611 TCATAACTGTGCTGTTTTCTCTTATC 57.743 34.615 0.10 0.00 0.00 1.75
5731 5978 8.097038 TCATAACTGTGCTGTTTTCTCTTATCT 58.903 33.333 0.10 0.00 0.00 1.98
5732 5979 8.725148 CATAACTGTGCTGTTTTCTCTTATCTT 58.275 33.333 0.10 0.00 0.00 2.40
5733 5980 9.944376 ATAACTGTGCTGTTTTCTCTTATCTTA 57.056 29.630 0.10 0.00 0.00 2.10
5734 5981 8.854614 AACTGTGCTGTTTTCTCTTATCTTAT 57.145 30.769 0.00 0.00 0.00 1.73
5735 5982 9.944376 AACTGTGCTGTTTTCTCTTATCTTATA 57.056 29.630 0.00 0.00 0.00 0.98
5736 5983 9.372369 ACTGTGCTGTTTTCTCTTATCTTATAC 57.628 33.333 0.00 0.00 0.00 1.47
5737 5984 9.593134 CTGTGCTGTTTTCTCTTATCTTATACT 57.407 33.333 0.00 0.00 0.00 2.12
5738 5985 9.587772 TGTGCTGTTTTCTCTTATCTTATACTC 57.412 33.333 0.00 0.00 0.00 2.59
5739 5986 9.036671 GTGCTGTTTTCTCTTATCTTATACTCC 57.963 37.037 0.00 0.00 0.00 3.85
5740 5987 8.204836 TGCTGTTTTCTCTTATCTTATACTCCC 58.795 37.037 0.00 0.00 0.00 4.30
5741 5988 8.425703 GCTGTTTTCTCTTATCTTATACTCCCT 58.574 37.037 0.00 0.00 0.00 4.20
5742 5989 9.974980 CTGTTTTCTCTTATCTTATACTCCCTC 57.025 37.037 0.00 0.00 0.00 4.30
5743 5990 8.925338 TGTTTTCTCTTATCTTATACTCCCTCC 58.075 37.037 0.00 0.00 0.00 4.30
5744 5991 7.762588 TTTCTCTTATCTTATACTCCCTCCG 57.237 40.000 0.00 0.00 0.00 4.63
5745 5992 6.451292 TCTCTTATCTTATACTCCCTCCGT 57.549 41.667 0.00 0.00 0.00 4.69
5746 5993 6.850234 TCTCTTATCTTATACTCCCTCCGTT 58.150 40.000 0.00 0.00 0.00 4.44
5747 5994 6.941436 TCTCTTATCTTATACTCCCTCCGTTC 59.059 42.308 0.00 0.00 0.00 3.95
5748 5995 6.008960 TCTTATCTTATACTCCCTCCGTTCC 58.991 44.000 0.00 0.00 0.00 3.62
5749 5996 3.675348 TCTTATACTCCCTCCGTTCCA 57.325 47.619 0.00 0.00 0.00 3.53
5750 5997 3.985127 TCTTATACTCCCTCCGTTCCAA 58.015 45.455 0.00 0.00 0.00 3.53
5751 5998 4.355549 TCTTATACTCCCTCCGTTCCAAA 58.644 43.478 0.00 0.00 0.00 3.28
5752 5999 4.778958 TCTTATACTCCCTCCGTTCCAAAA 59.221 41.667 0.00 0.00 0.00 2.44
5753 6000 5.427481 TCTTATACTCCCTCCGTTCCAAAAT 59.573 40.000 0.00 0.00 0.00 1.82
5754 6001 6.612456 TCTTATACTCCCTCCGTTCCAAAATA 59.388 38.462 0.00 0.00 0.00 1.40
5755 6002 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5756 6003 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5757 6004 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
5758 6005 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5759 6006 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5760 6007 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5761 6008 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
5762 6009 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
5763 6010 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
5764 6011 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
5765 6012 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
5766 6013 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
5767 6014 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
5768 6015 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
5769 6016 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
5770 6017 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
5771 6018 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
5772 6019 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
5773 6020 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
5774 6021 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
5775 6022 9.449719 AAAATAGATGACCCAACTTTGTACTAG 57.550 33.333 0.00 0.00 0.00 2.57
5776 6023 4.833390 AGATGACCCAACTTTGTACTAGC 58.167 43.478 0.00 0.00 0.00 3.42
5777 6024 4.532521 AGATGACCCAACTTTGTACTAGCT 59.467 41.667 0.00 0.00 0.00 3.32
5778 6025 4.699925 TGACCCAACTTTGTACTAGCTT 57.300 40.909 0.00 0.00 0.00 3.74
5779 6026 5.043737 TGACCCAACTTTGTACTAGCTTT 57.956 39.130 0.00 0.00 0.00 3.51
5780 6027 4.819630 TGACCCAACTTTGTACTAGCTTTG 59.180 41.667 0.00 0.00 0.00 2.77
5781 6028 4.788679 ACCCAACTTTGTACTAGCTTTGT 58.211 39.130 0.00 0.00 0.00 2.83
5782 6029 5.932455 ACCCAACTTTGTACTAGCTTTGTA 58.068 37.500 0.00 0.00 0.00 2.41
5783 6030 5.761726 ACCCAACTTTGTACTAGCTTTGTAC 59.238 40.000 17.52 17.52 40.27 2.90
5784 6031 5.995897 CCCAACTTTGTACTAGCTTTGTACT 59.004 40.000 21.94 7.09 40.44 2.73
5785 6032 7.156673 CCCAACTTTGTACTAGCTTTGTACTA 58.843 38.462 21.94 15.68 40.44 1.82
5786 6033 7.658575 CCCAACTTTGTACTAGCTTTGTACTAA 59.341 37.037 21.94 19.81 40.44 2.24
5787 6034 9.048446 CCAACTTTGTACTAGCTTTGTACTAAA 57.952 33.333 21.94 18.77 40.44 1.85
5789 6036 9.828039 AACTTTGTACTAGCTTTGTACTAAAGT 57.172 29.630 26.72 26.72 43.49 2.66
5790 6037 9.828039 ACTTTGTACTAGCTTTGTACTAAAGTT 57.172 29.630 26.72 19.99 41.82 2.66
5817 6064 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
5818 6065 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
5819 6066 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
5820 6067 9.082313 ACAAAGTTGAGTCATCTATTTTGGAAT 57.918 29.630 14.35 0.00 40.00 3.01
5821 6068 9.350357 CAAAGTTGAGTCATCTATTTTGGAATG 57.650 33.333 4.14 0.00 35.65 2.67
5822 6069 7.636150 AGTTGAGTCATCTATTTTGGAATGG 57.364 36.000 1.70 0.00 0.00 3.16
5823 6070 7.405292 AGTTGAGTCATCTATTTTGGAATGGA 58.595 34.615 1.70 0.00 37.20 3.41
5824 6071 7.555554 AGTTGAGTCATCTATTTTGGAATGGAG 59.444 37.037 1.70 0.00 36.39 3.86
5825 6072 6.359804 TGAGTCATCTATTTTGGAATGGAGG 58.640 40.000 0.00 0.00 36.39 4.30
5826 6073 5.699143 AGTCATCTATTTTGGAATGGAGGG 58.301 41.667 0.00 0.00 36.39 4.30
5827 6074 5.433051 AGTCATCTATTTTGGAATGGAGGGA 59.567 40.000 0.00 0.00 36.39 4.20
5828 6075 5.767168 GTCATCTATTTTGGAATGGAGGGAG 59.233 44.000 0.00 0.00 36.39 4.30
5839 6086 7.888514 TGGAATGGAGGGAGTATAATGTTAT 57.111 36.000 0.00 0.00 0.00 1.89
5856 6103 6.843069 ATGTTATTTTCACACCAAACAAGC 57.157 33.333 0.00 0.00 31.33 4.01
5889 6136 5.754890 GGACACACCGTAGAAAGTTCTTTTA 59.245 40.000 0.00 0.00 38.70 1.52
5890 6137 6.292542 GGACACACCGTAGAAAGTTCTTTTAC 60.293 42.308 0.00 4.30 38.70 2.01
5891 6138 5.232838 ACACACCGTAGAAAGTTCTTTTACG 59.767 40.000 19.78 19.78 38.70 3.18
5892 6139 5.232838 CACACCGTAGAAAGTTCTTTTACGT 59.767 40.000 22.03 0.00 35.90 3.57
5893 6140 5.460091 ACACCGTAGAAAGTTCTTTTACGTC 59.540 40.000 22.03 6.34 35.90 4.34
5894 6141 5.689068 CACCGTAGAAAGTTCTTTTACGTCT 59.311 40.000 22.03 11.06 35.90 4.18
5896 6143 6.419116 ACCGTAGAAAGTTCTTTTACGTCTTC 59.581 38.462 22.03 7.72 35.90 2.87
5897 6144 6.418819 CCGTAGAAAGTTCTTTTACGTCTTCA 59.581 38.462 22.03 0.00 35.90 3.02
5912 6160 6.721571 ACGTCTTCATTTATGTCGTTTCAT 57.278 33.333 0.00 0.00 0.00 2.57
5966 6214 8.564574 TGTTTCCAGTTTGTGTTTCAGTATATC 58.435 33.333 0.00 0.00 0.00 1.63
5970 6218 4.328983 AGTTTGTGTTTCAGTATATCGCCG 59.671 41.667 0.00 0.00 0.00 6.46
5971 6219 3.513680 TGTGTTTCAGTATATCGCCGT 57.486 42.857 0.00 0.00 0.00 5.68
5973 6221 4.603985 TGTGTTTCAGTATATCGCCGTAG 58.396 43.478 0.00 0.00 0.00 3.51
5989 6237 2.076100 CGTAGGATTCTGTTGCTGCAA 58.924 47.619 11.69 11.69 0.00 4.08
6029 6278 8.461222 CAATGCTCTGAAATACTGAAATAACCA 58.539 33.333 0.00 0.00 0.00 3.67
6077 6328 2.098607 GGATCTACACGATGACGGAACA 59.901 50.000 0.00 0.00 44.46 3.18
6182 6434 0.516001 CACACACACTCTGCATCTGC 59.484 55.000 0.00 0.00 42.50 4.26
6215 6467 5.575995 CCGTCTTCTTACAAGTAGCTAAACC 59.424 44.000 0.00 0.00 0.00 3.27
6220 6472 6.535963 TCTTACAAGTAGCTAAACCTACCC 57.464 41.667 0.00 0.00 38.74 3.69
6221 6473 3.881937 ACAAGTAGCTAAACCTACCCG 57.118 47.619 0.00 0.00 38.74 5.28
6224 6476 4.179298 CAAGTAGCTAAACCTACCCGTTC 58.821 47.826 0.00 0.00 38.74 3.95
6227 6518 2.532843 AGCTAAACCTACCCGTTCTGA 58.467 47.619 0.00 0.00 0.00 3.27
6233 6524 0.178068 CCTACCCGTTCTGATGGTGG 59.822 60.000 4.77 2.34 33.55 4.61
6243 6534 1.352017 TCTGATGGTGGTTGCAGATGT 59.648 47.619 0.00 0.00 32.85 3.06
6333 6624 2.746277 GCGCCGATTGTGGAGGTT 60.746 61.111 0.00 0.00 0.00 3.50
6374 6665 8.079809 GGTGCTGTAAATTATACAACAACAGTT 58.920 33.333 11.22 0.00 33.00 3.16
6397 6691 4.966787 TTTTGGCGCGGGAGGCTT 62.967 61.111 8.83 0.00 40.44 4.35
6472 6775 6.930731 TGTTTGTTTTCCTTAGCTTTTCTGT 58.069 32.000 0.00 0.00 0.00 3.41
6477 6780 6.377146 TGTTTTCCTTAGCTTTTCTGTGTCTT 59.623 34.615 0.00 0.00 0.00 3.01
6542 6849 5.215252 ACATACATATATATCAGCCGCCC 57.785 43.478 0.00 0.00 0.00 6.13
6543 6850 2.890808 ACATATATATCAGCCGCCCG 57.109 50.000 0.00 0.00 0.00 6.13
6545 6852 0.393077 ATATATATCAGCCGCCCGCC 59.607 55.000 0.00 0.00 38.78 6.13
6546 6853 2.011741 TATATATCAGCCGCCCGCCG 62.012 60.000 0.00 0.00 38.78 6.46
6818 7172 3.006859 TGTGTTGTATGACCAGTCCTCTG 59.993 47.826 0.00 0.00 41.01 3.35
6837 7191 2.733026 CTGGCTTGCTAATGTTTGTTGC 59.267 45.455 0.00 0.00 0.00 4.17
6860 7214 9.787532 TTGCAAATATTTATCTCTGTGCTTAAC 57.212 29.630 0.00 0.00 0.00 2.01
6865 7219 9.461312 AATATTTATCTCTGTGCTTAACCACAA 57.539 29.630 5.18 0.00 44.37 3.33
6871 7225 5.008613 TCTCTGTGCTTAACCACAATTTGTC 59.991 40.000 5.18 0.00 44.37 3.18
6872 7226 4.642437 TCTGTGCTTAACCACAATTTGTCA 59.358 37.500 5.18 0.00 44.37 3.58
6873 7227 5.126222 TCTGTGCTTAACCACAATTTGTCAA 59.874 36.000 5.18 0.00 44.37 3.18
6874 7228 5.911752 TGTGCTTAACCACAATTTGTCAAT 58.088 33.333 0.99 0.00 42.33 2.57
6875 7229 5.982516 TGTGCTTAACCACAATTTGTCAATC 59.017 36.000 0.99 0.00 42.33 2.67
6908 7275 7.117667 CCAAAAACAAGGCCTATACAATTTGTC 59.882 37.037 5.16 0.00 0.00 3.18
6932 7299 9.651718 GTCTCAAGTCAAATAGTGTAAAGTTTG 57.348 33.333 0.00 0.00 33.91 2.93
6933 7300 9.607988 TCTCAAGTCAAATAGTGTAAAGTTTGA 57.392 29.630 0.00 0.00 38.01 2.69
6946 7313 8.621286 AGTGTAAAGTTTGATTGAGTTTGTAGG 58.379 33.333 0.00 0.00 0.00 3.18
6947 7314 8.617809 GTGTAAAGTTTGATTGAGTTTGTAGGA 58.382 33.333 0.00 0.00 0.00 2.94
6948 7315 9.179909 TGTAAAGTTTGATTGAGTTTGTAGGAA 57.820 29.630 0.00 0.00 0.00 3.36
6951 7318 9.936759 AAAGTTTGATTGAGTTTGTAGGAAAAA 57.063 25.926 0.00 0.00 0.00 1.94
7049 7416 9.646336 GCTATTGTAGTTATTGGTATTTGTTCG 57.354 33.333 0.00 0.00 0.00 3.95
7051 7418 8.795842 ATTGTAGTTATTGGTATTTGTTCGGA 57.204 30.769 0.00 0.00 0.00 4.55
7052 7419 8.618702 TTGTAGTTATTGGTATTTGTTCGGAA 57.381 30.769 0.00 0.00 0.00 4.30
7053 7420 8.618702 TGTAGTTATTGGTATTTGTTCGGAAA 57.381 30.769 0.00 0.00 0.00 3.13
7054 7421 9.064706 TGTAGTTATTGGTATTTGTTCGGAAAA 57.935 29.630 0.00 0.00 0.00 2.29
7055 7422 9.333497 GTAGTTATTGGTATTTGTTCGGAAAAC 57.667 33.333 0.00 0.00 0.00 2.43
7056 7423 7.079475 AGTTATTGGTATTTGTTCGGAAAACG 58.921 34.615 0.00 0.00 46.11 3.60
7057 7424 4.897025 TTGGTATTTGTTCGGAAAACGT 57.103 36.364 0.00 0.00 44.69 3.99
7058 7425 4.897025 TGGTATTTGTTCGGAAAACGTT 57.103 36.364 0.00 0.00 44.69 3.99
7059 7426 5.246145 TGGTATTTGTTCGGAAAACGTTT 57.754 34.783 7.96 7.96 44.69 3.60
7060 7427 5.035443 TGGTATTTGTTCGGAAAACGTTTG 58.965 37.500 15.46 2.12 44.69 2.93
7061 7428 4.085466 GGTATTTGTTCGGAAAACGTTTGC 60.085 41.667 15.46 13.05 44.69 3.68
7062 7429 1.536149 TTGTTCGGAAAACGTTTGCG 58.464 45.000 15.46 14.95 44.69 4.85
7063 7430 0.725686 TGTTCGGAAAACGTTTGCGA 59.274 45.000 15.46 16.91 44.69 5.10
7064 7431 1.129998 TGTTCGGAAAACGTTTGCGAA 59.870 42.857 24.13 24.13 46.85 4.70
7065 7432 2.759538 TTCGGAAAACGTTTGCGAAT 57.240 40.000 24.13 8.38 44.85 3.34
7066 7433 2.025544 TCGGAAAACGTTTGCGAATG 57.974 45.000 15.46 4.23 44.69 2.67
7089 7456 3.057548 CCATGCTGGCTTCGTGCA 61.058 61.111 5.65 0.00 45.15 4.57
7090 7457 2.412323 CCATGCTGGCTTCGTGCAT 61.412 57.895 0.00 0.00 46.74 3.96
7092 7459 2.117156 ATGCTGGCTTCGTGCATCC 61.117 57.895 0.00 0.00 42.92 3.51
7093 7460 2.747460 GCTGGCTTCGTGCATCCA 60.747 61.111 0.00 0.00 45.15 3.41
7095 7462 1.672030 CTGGCTTCGTGCATCCACA 60.672 57.895 0.00 0.00 45.15 4.17
7096 7463 1.915614 CTGGCTTCGTGCATCCACAC 61.916 60.000 0.00 0.00 45.15 3.82
7097 7464 1.965930 GGCTTCGTGCATCCACACA 60.966 57.895 0.00 0.00 45.15 3.72
7105 7472 1.106351 TGCATCCACACAAAGCCGTT 61.106 50.000 0.00 0.00 0.00 4.44
7108 7475 0.110486 ATCCACACAAAGCCGTTCCT 59.890 50.000 0.00 0.00 0.00 3.36
7109 7476 0.106918 TCCACACAAAGCCGTTCCTT 60.107 50.000 0.00 0.00 0.00 3.36
7138 7505 1.029947 GCCTGTATTTGGTGGACCCG 61.030 60.000 0.00 0.00 35.15 5.28
7139 7506 0.326927 CCTGTATTTGGTGGACCCGT 59.673 55.000 0.00 0.00 35.15 5.28
7141 7508 0.606944 TGTATTTGGTGGACCCGTGC 60.607 55.000 0.00 0.00 35.15 5.34
7142 7509 1.376166 TATTTGGTGGACCCGTGCG 60.376 57.895 0.00 0.00 35.15 5.34
7162 7529 2.366435 CCGCCCCTTCCCTCCTTA 60.366 66.667 0.00 0.00 0.00 2.69
7163 7530 1.770518 CCGCCCCTTCCCTCCTTAT 60.771 63.158 0.00 0.00 0.00 1.73
7166 7533 1.524037 GCCCCTTCCCTCCTTATCTT 58.476 55.000 0.00 0.00 0.00 2.40
7167 7534 1.853622 GCCCCTTCCCTCCTTATCTTT 59.146 52.381 0.00 0.00 0.00 2.52
7168 7535 2.245028 GCCCCTTCCCTCCTTATCTTTT 59.755 50.000 0.00 0.00 0.00 2.27
7169 7536 3.688702 GCCCCTTCCCTCCTTATCTTTTC 60.689 52.174 0.00 0.00 0.00 2.29
7171 7538 3.117474 CCCTTCCCTCCTTATCTTTTCCC 60.117 52.174 0.00 0.00 0.00 3.97
7172 7539 3.117474 CCTTCCCTCCTTATCTTTTCCCC 60.117 52.174 0.00 0.00 0.00 4.81
7197 7573 2.203182 CATCCCCTACCGCCCCTA 59.797 66.667 0.00 0.00 0.00 3.53
7201 7577 4.167838 CCCTACCGCCCCTACCCT 62.168 72.222 0.00 0.00 0.00 4.34
7219 7595 3.160269 CCCTTGCCATGTTTCTTCTCTT 58.840 45.455 0.00 0.00 0.00 2.85
7226 7602 4.013050 CCATGTTTCTTCTCTTCCTTCCC 58.987 47.826 0.00 0.00 0.00 3.97
7227 7603 4.263683 CCATGTTTCTTCTCTTCCTTCCCT 60.264 45.833 0.00 0.00 0.00 4.20
7244 7620 4.961511 TCGCGCTGCCACGAAACT 62.962 61.111 5.56 0.00 34.93 2.66
7248 7624 1.666553 CGCTGCCACGAAACTACCA 60.667 57.895 0.00 0.00 34.06 3.25
7253 7629 2.552315 CTGCCACGAAACTACCACAAAT 59.448 45.455 0.00 0.00 0.00 2.32
7270 7649 3.557903 ATCACACAGCTGCGCCCTT 62.558 57.895 15.27 0.00 0.00 3.95
7271 7650 4.034258 CACACAGCTGCGCCCTTG 62.034 66.667 15.27 5.86 0.00 3.61
7287 7666 1.355066 CTTGCGCGAAAGACCTCTCC 61.355 60.000 22.93 0.00 0.00 3.71
7288 7667 2.509561 GCGCGAAAGACCTCTCCC 60.510 66.667 12.10 0.00 0.00 4.30
7320 7699 2.253452 CACAAGTTGAGCAGCGGC 59.747 61.111 10.54 0.00 41.61 6.53
7341 7720 1.323271 TGCTGGAACCGTGGCAAAAA 61.323 50.000 0.00 0.00 0.00 1.94
7378 7757 1.029681 GGAAAAAGCTGGAACCACGT 58.970 50.000 0.00 0.00 0.00 4.49
7394 7773 1.805943 CACGTCCATGAGATGTTGCAA 59.194 47.619 0.00 0.00 42.30 4.08
7395 7774 2.421073 CACGTCCATGAGATGTTGCAAT 59.579 45.455 0.59 0.00 42.30 3.56
7397 7776 2.421073 CGTCCATGAGATGTTGCAATGT 59.579 45.455 0.59 0.00 0.00 2.71
7400 7779 3.827876 TCCATGAGATGTTGCAATGTTGT 59.172 39.130 0.59 0.00 0.00 3.32
7401 7780 3.924073 CCATGAGATGTTGCAATGTTGTG 59.076 43.478 0.59 0.00 0.00 3.33
7402 7781 4.321378 CCATGAGATGTTGCAATGTTGTGA 60.321 41.667 0.59 0.00 0.00 3.58
7404 7783 3.631227 TGAGATGTTGCAATGTTGTGACA 59.369 39.130 0.59 0.00 40.71 3.58
7405 7784 4.224433 GAGATGTTGCAATGTTGTGACAG 58.776 43.478 0.59 0.00 39.58 3.51
7406 7785 2.867287 TGTTGCAATGTTGTGACAGG 57.133 45.000 0.59 0.00 39.58 4.00
7407 7786 1.408340 TGTTGCAATGTTGTGACAGGG 59.592 47.619 0.59 0.00 39.58 4.45
7409 7788 0.184692 TGCAATGTTGTGACAGGGGA 59.815 50.000 0.00 0.00 39.58 4.81
7434 7835 1.306296 GCCAGAATAAGGGGGCACA 59.694 57.895 0.00 0.00 45.70 4.57
7439 7840 3.519107 CCAGAATAAGGGGGCACATTTTT 59.481 43.478 0.00 0.00 0.00 1.94
7481 7882 0.250381 TGCTTTAACCGGCGAGGAAA 60.250 50.000 9.30 4.13 45.00 3.13
7488 7889 1.137404 CCGGCGAGGAAATTTGCTG 59.863 57.895 17.69 8.41 45.00 4.41
7493 7894 1.800286 GCGAGGAAATTTGCTGCATCC 60.800 52.381 17.69 11.20 0.00 3.51
7495 7896 0.174162 AGGAAATTTGCTGCATCCGC 59.826 50.000 11.84 0.00 35.31 5.54
7496 7897 0.807275 GGAAATTTGCTGCATCCGCC 60.807 55.000 1.84 0.00 37.32 6.13
7497 7898 0.108709 GAAATTTGCTGCATCCGCCA 60.109 50.000 1.84 0.00 37.32 5.69
7499 7900 0.538118 AATTTGCTGCATCCGCCATT 59.462 45.000 1.84 0.00 37.32 3.16
7507 7908 2.411904 TGCATCCGCCATTTGTTTTTC 58.588 42.857 0.00 0.00 37.32 2.29
7515 7916 3.247411 CGCCATTTGTTTTTCCTGGAAAC 59.753 43.478 21.00 12.32 37.48 2.78
7516 7917 4.450976 GCCATTTGTTTTTCCTGGAAACT 58.549 39.130 21.00 0.40 37.75 2.66
7522 7923 3.504520 TGTTTTTCCTGGAAACTATCGCC 59.495 43.478 21.00 5.42 37.75 5.54
7558 7959 4.036262 TGCTACTACTGGCTTGTGTTTTTG 59.964 41.667 0.00 0.00 0.00 2.44
7567 7968 2.676463 GCTTGTGTTTTTGCTGGAACCA 60.676 45.455 0.00 0.00 0.00 3.67
7570 7972 2.499289 TGTGTTTTTGCTGGAACCACAT 59.501 40.909 4.78 0.00 0.00 3.21
7589 7991 5.393027 CCACATCCATTTTTGCTACTACCAC 60.393 44.000 0.00 0.00 0.00 4.16
7590 7992 4.705023 ACATCCATTTTTGCTACTACCACC 59.295 41.667 0.00 0.00 0.00 4.61
7612 8014 1.126488 TTGGGTTTTGCTGGATTGCA 58.874 45.000 0.00 0.00 41.65 4.08
7717 8139 0.742281 CCAGAGGGTCTGCAACATCG 60.742 60.000 0.00 0.00 42.98 3.84
7718 8140 0.742281 CAGAGGGTCTGCAACATCGG 60.742 60.000 0.00 0.00 37.72 4.18
7725 8147 2.358615 TGCAACATCGGCGAGCTT 60.359 55.556 17.22 5.84 0.00 3.74
7730 8152 0.951558 AACATCGGCGAGCTTGTTTT 59.048 45.000 18.59 1.67 0.00 2.43
7739 8161 3.166657 GCGAGCTTGTTTTCTTGCTATG 58.833 45.455 2.14 0.00 36.90 2.23
7745 8167 3.134574 TGTTTTCTTGCTATGACCGGT 57.865 42.857 6.92 6.92 0.00 5.28
7750 8172 1.078497 TTGCTATGACCGGTGGCAG 60.078 57.895 14.63 6.70 34.37 4.85
7754 8176 2.572095 CTATGACCGGTGGCAGCGAA 62.572 60.000 37.34 23.07 42.41 4.70
7755 8177 2.572095 TATGACCGGTGGCAGCGAAG 62.572 60.000 37.34 24.49 42.41 3.79
7771 8193 3.192633 AGCGAAGTGTTTTTGTTGGAAGT 59.807 39.130 0.00 0.00 0.00 3.01
7773 8195 5.067283 AGCGAAGTGTTTTTGTTGGAAGTAT 59.933 36.000 0.00 0.00 0.00 2.12
7777 8199 6.144078 AGTGTTTTTGTTGGAAGTATGGAC 57.856 37.500 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.068593 ACCATGATAGTTGGGTTCATATTGTTG 59.931 37.037 0.00 0.00 38.64 3.33
1 2 7.125391 ACCATGATAGTTGGGTTCATATTGTT 58.875 34.615 0.00 0.00 38.64 2.83
4 5 7.000472 CAGACCATGATAGTTGGGTTCATATT 59.000 38.462 0.00 0.00 38.64 1.28
7 8 4.228210 ACAGACCATGATAGTTGGGTTCAT 59.772 41.667 0.00 0.00 38.64 2.57
8 9 3.587061 ACAGACCATGATAGTTGGGTTCA 59.413 43.478 0.00 0.00 38.64 3.18
9 10 4.222124 ACAGACCATGATAGTTGGGTTC 57.778 45.455 0.00 0.00 38.64 3.62
10 11 5.975988 ATACAGACCATGATAGTTGGGTT 57.024 39.130 0.00 0.00 38.64 4.11
11 12 5.191722 ACAATACAGACCATGATAGTTGGGT 59.808 40.000 0.00 0.00 38.64 4.51
12 13 5.528690 CACAATACAGACCATGATAGTTGGG 59.471 44.000 0.00 0.00 38.64 4.12
13 14 5.528690 CCACAATACAGACCATGATAGTTGG 59.471 44.000 0.00 0.00 40.26 3.77
14 15 5.008019 GCCACAATACAGACCATGATAGTTG 59.992 44.000 0.00 0.00 0.00 3.16
15 16 5.104360 AGCCACAATACAGACCATGATAGTT 60.104 40.000 0.00 0.00 0.00 2.24
16 17 4.410228 AGCCACAATACAGACCATGATAGT 59.590 41.667 0.00 0.00 0.00 2.12
17 18 4.753610 CAGCCACAATACAGACCATGATAG 59.246 45.833 0.00 0.00 0.00 2.08
18 19 4.408596 TCAGCCACAATACAGACCATGATA 59.591 41.667 0.00 0.00 0.00 2.15
19 20 3.200605 TCAGCCACAATACAGACCATGAT 59.799 43.478 0.00 0.00 0.00 2.45
36 37 2.168521 TGCACTCTAAGTGGTATCAGCC 59.831 50.000 9.01 0.00 46.01 4.85
38 39 6.204688 TGTTTTTGCACTCTAAGTGGTATCAG 59.795 38.462 9.01 0.00 46.01 2.90
48 49 9.092876 CCTTAAATTGTTGTTTTTGCACTCTAA 57.907 29.630 0.00 0.00 0.00 2.10
62 63 6.935167 ACCCTCTAAATGCCTTAAATTGTTG 58.065 36.000 0.00 0.00 0.00 3.33
63 64 8.113462 TCTACCCTCTAAATGCCTTAAATTGTT 58.887 33.333 0.00 0.00 0.00 2.83
64 65 7.639378 TCTACCCTCTAAATGCCTTAAATTGT 58.361 34.615 0.00 0.00 0.00 2.71
65 66 8.406297 GTTCTACCCTCTAAATGCCTTAAATTG 58.594 37.037 0.00 0.00 0.00 2.32
68 69 7.023171 TGTTCTACCCTCTAAATGCCTTAAA 57.977 36.000 0.00 0.00 0.00 1.52
73 74 5.163301 TGAGATGTTCTACCCTCTAAATGCC 60.163 44.000 0.00 0.00 0.00 4.40
80 81 4.614475 TCACATGAGATGTTCTACCCTCT 58.386 43.478 0.00 0.00 42.70 3.69
81 82 5.344743 TTCACATGAGATGTTCTACCCTC 57.655 43.478 0.00 0.00 42.70 4.30
105 106 7.741027 TGTATTGTTGTAATTTTACGGTGGA 57.259 32.000 0.00 0.00 36.45 4.02
109 110 8.675504 TGGGTATGTATTGTTGTAATTTTACGG 58.324 33.333 0.00 0.00 36.45 4.02
115 116 8.644374 ACAGTTGGGTATGTATTGTTGTAATT 57.356 30.769 0.00 0.00 0.00 1.40
119 120 5.007682 GGACAGTTGGGTATGTATTGTTGT 58.992 41.667 0.00 0.00 0.00 3.32
128 129 5.815233 ATAGATCAGGACAGTTGGGTATG 57.185 43.478 0.00 0.00 0.00 2.39
129 130 7.527868 GCAATATAGATCAGGACAGTTGGGTAT 60.528 40.741 0.00 0.00 0.00 2.73
130 131 6.239600 GCAATATAGATCAGGACAGTTGGGTA 60.240 42.308 0.00 0.00 0.00 3.69
139 140 4.973168 TGGGTTGCAATATAGATCAGGAC 58.027 43.478 0.59 0.00 0.00 3.85
142 143 6.372659 GTGGTATGGGTTGCAATATAGATCAG 59.627 42.308 0.59 0.00 0.00 2.90
145 146 5.313240 AGGTGGTATGGGTTGCAATATAGAT 59.687 40.000 0.59 0.00 0.00 1.98
149 150 3.971468 AGGTGGTATGGGTTGCAATAT 57.029 42.857 0.59 0.58 0.00 1.28
198 200 6.947258 TCATGCATGATGTTATGTCGTTTAG 58.053 36.000 25.42 0.00 33.29 1.85
215 218 6.525578 AATCTTGTCACAGATTTCATGCAT 57.474 33.333 0.00 0.00 40.04 3.96
216 219 5.970317 AATCTTGTCACAGATTTCATGCA 57.030 34.783 0.00 0.00 40.04 3.96
228 231 8.014322 TGTTCGTATCTTTGTAATCTTGTCAC 57.986 34.615 0.00 0.00 0.00 3.67
253 256 1.134401 CATACCGACCATCACAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
261 264 2.223971 ACCGAATGTCATACCGACCATC 60.224 50.000 8.57 0.00 44.71 3.51
301 304 8.918202 ATCCTTTAAATGCCGTGAATTCTATA 57.082 30.769 7.05 0.00 0.00 1.31
302 305 7.823745 ATCCTTTAAATGCCGTGAATTCTAT 57.176 32.000 7.05 0.00 0.00 1.98
310 313 6.918022 GGATTTTCTATCCTTTAAATGCCGTG 59.082 38.462 0.00 0.00 35.36 4.94
339 342 7.227461 GTCGTAATTATGGCGTAGATTTCATG 58.773 38.462 4.86 0.00 0.00 3.07
340 343 6.089016 CGTCGTAATTATGGCGTAGATTTCAT 59.911 38.462 20.82 0.00 35.74 2.57
372 375 1.188219 ACAGACCATGACAGCTCGGT 61.188 55.000 0.00 0.00 0.00 4.69
461 464 3.804036 TGTAATCCTGCCGTAGATTTGG 58.196 45.455 0.00 0.00 34.60 3.28
483 486 2.963320 GCAACCGGTTCGTGTCGT 60.963 61.111 19.24 0.00 0.00 4.34
533 539 1.453762 GGGGATCGTCGAATCTCGGT 61.454 60.000 0.00 0.00 40.88 4.69
554 560 1.229428 TTCTGTGCTTGCGGAGAAAG 58.771 50.000 4.35 0.00 0.00 2.62
564 570 1.377725 CGGCTGGGATTCTGTGCTT 60.378 57.895 0.00 0.00 0.00 3.91
673 680 1.817740 GCCTAGGTTTTGTGTGGCAGA 60.818 52.381 11.31 0.00 40.04 4.26
676 683 2.084546 CTAGCCTAGGTTTTGTGTGGC 58.915 52.381 11.31 0.00 40.54 5.01
696 714 2.818130 TGCCTTGCCTTTCACAATTC 57.182 45.000 0.00 0.00 0.00 2.17
718 736 1.415374 CACTGTTGCAAGCAATCTGC 58.585 50.000 11.00 0.00 45.46 4.26
719 737 1.338973 ACCACTGTTGCAAGCAATCTG 59.661 47.619 11.00 10.56 38.28 2.90
720 738 1.338973 CACCACTGTTGCAAGCAATCT 59.661 47.619 11.00 0.00 38.28 2.40
721 739 1.603678 CCACCACTGTTGCAAGCAATC 60.604 52.381 11.00 5.72 38.28 2.67
722 740 0.390124 CCACCACTGTTGCAAGCAAT 59.610 50.000 11.00 0.00 38.28 3.56
723 741 1.674764 CCCACCACTGTTGCAAGCAA 61.675 55.000 0.00 2.89 0.00 3.91
724 742 2.126596 CCCACCACTGTTGCAAGCA 61.127 57.895 0.00 0.02 0.00 3.91
725 743 2.127232 ACCCACCACTGTTGCAAGC 61.127 57.895 0.00 0.00 0.00 4.01
726 744 1.735360 CACCCACCACTGTTGCAAG 59.265 57.895 0.00 0.00 0.00 4.01
752 770 2.520741 CGCTCCCTCTCTCCCTCC 60.521 72.222 0.00 0.00 0.00 4.30
753 771 2.520741 CCGCTCCCTCTCTCCCTC 60.521 72.222 0.00 0.00 0.00 4.30
754 772 4.851214 GCCGCTCCCTCTCTCCCT 62.851 72.222 0.00 0.00 0.00 4.20
757 775 4.200283 CACGCCGCTCCCTCTCTC 62.200 72.222 0.00 0.00 0.00 3.20
759 777 4.803426 CACACGCCGCTCCCTCTC 62.803 72.222 0.00 0.00 0.00 3.20
942 964 4.506255 GGGGCGATTGGAGGGGTG 62.506 72.222 0.00 0.00 0.00 4.61
1052 1074 2.754552 TGCCTCCTTTGGAAATCAATCG 59.245 45.455 0.00 0.00 34.98 3.34
1053 1075 3.429960 GCTGCCTCCTTTGGAAATCAATC 60.430 47.826 0.00 0.00 34.98 2.67
1054 1076 2.498885 GCTGCCTCCTTTGGAAATCAAT 59.501 45.455 0.00 0.00 34.98 2.57
1055 1077 1.895131 GCTGCCTCCTTTGGAAATCAA 59.105 47.619 0.00 0.00 0.00 2.57
1063 1085 1.505425 GCAAAAAGCTGCCTCCTTTG 58.495 50.000 0.00 2.75 41.15 2.77
1085 1107 6.709397 GCTATCCCTAATTACCCTACAACAAC 59.291 42.308 0.00 0.00 0.00 3.32
1559 1596 1.274703 GCCACATCTGGAGGAGGGAA 61.275 60.000 0.00 0.00 40.55 3.97
2072 2109 1.135972 CAGACAATTTTGAGACCGGCG 60.136 52.381 0.00 0.00 0.00 6.46
2304 2344 4.080919 AGCTTACAATGACTATGCCAGACA 60.081 41.667 0.00 0.00 33.43 3.41
2321 2361 5.567138 ATTCCATTGCACTACAAGCTTAC 57.433 39.130 0.00 0.00 42.87 2.34
2363 2403 8.960591 CAACAAATATCTCTTCCAATAACCAGT 58.039 33.333 0.00 0.00 0.00 4.00
2453 2493 5.123936 AGAAAAGTAAAGGACCACAGACAC 58.876 41.667 0.00 0.00 0.00 3.67
2550 2590 4.484236 CATTTCTGCGGCAAGTATTTTCA 58.516 39.130 3.44 0.00 0.00 2.69
2562 2602 5.139435 TCTAGATACATCCATTTCTGCGG 57.861 43.478 0.00 0.00 0.00 5.69
2640 2680 6.808321 TGCTATATAATACTCCCACCATCC 57.192 41.667 0.00 0.00 0.00 3.51
2643 2683 5.163447 GCGATGCTATATAATACTCCCACCA 60.163 44.000 0.00 0.00 0.00 4.17
2646 2686 7.061054 AGTAGCGATGCTATATAATACTCCCA 58.939 38.462 1.38 0.00 43.30 4.37
2684 2724 4.934001 ACTGACATTTCTGTATCACTGCAG 59.066 41.667 13.48 13.48 35.14 4.41
2735 2777 5.910590 AGGCATTCAATAATGGGGGTTTTAT 59.089 36.000 0.00 0.00 42.39 1.40
2740 2782 2.247111 TGAGGCATTCAATAATGGGGGT 59.753 45.455 0.00 0.00 42.39 4.95
2860 2905 7.124573 TGCTACAGTGTGTAATAGGATGAAT 57.875 36.000 5.88 0.00 31.67 2.57
2909 2954 6.553852 ACGGATACTATTCCTATCACAGGTTT 59.446 38.462 0.00 0.00 45.71 3.27
3005 3050 7.254227 TGTGTAGTCTGTACCAAATTTCAAC 57.746 36.000 0.00 0.00 0.00 3.18
3035 3231 4.119862 GCCCTTGACCTCAAAAGAAAAAC 58.880 43.478 0.00 0.00 35.15 2.43
3051 3247 7.127175 CAATGGAATTATGGAACAAGCCCTTG 61.127 42.308 6.48 6.48 36.31 3.61
3106 3302 3.459227 TGATCAGCCCATAAATGGTGAGA 59.541 43.478 8.16 3.22 46.65 3.27
3113 3309 5.251764 GCATCTACTGATCAGCCCATAAAT 58.748 41.667 22.83 3.03 0.00 1.40
3204 3408 3.554934 TGGGCATTCCTAACAGCTAATG 58.445 45.455 1.05 1.05 36.20 1.90
3249 3453 3.610040 ACGACAACAGATAAGATGGCA 57.390 42.857 0.00 0.00 0.00 4.92
3250 3454 6.417191 TTTTACGACAACAGATAAGATGGC 57.583 37.500 0.00 0.00 0.00 4.40
3510 3720 7.231317 ACTTTGAATGCTCCAGATAACAAAAGA 59.769 33.333 0.00 0.00 0.00 2.52
3535 3745 4.098960 TCCGGTCCATCAGATTACAGTAAC 59.901 45.833 0.00 0.00 0.00 2.50
3578 3788 0.744874 TCCTACGAGGGAAATGCTCG 59.255 55.000 0.00 0.00 44.96 5.03
3713 3930 7.936847 TCAAAACATTTCACAGTACCATCTAGT 59.063 33.333 0.00 0.00 0.00 2.57
3763 3980 7.075797 TCAGTTCAGGATCCTATCTTCCATTA 58.924 38.462 15.67 0.00 34.27 1.90
3794 4011 3.997021 AGAAGAAGGAAACATGTAGCACG 59.003 43.478 0.00 0.00 0.00 5.34
3809 4026 5.659048 GTTGGTGTCACAACTAGAAGAAG 57.341 43.478 5.12 0.00 45.49 2.85
3840 4060 3.510360 ACTTAATGAGCAGACACGGTACT 59.490 43.478 0.00 0.00 0.00 2.73
3849 4069 5.789643 AAAGGCAAAACTTAATGAGCAGA 57.210 34.783 0.00 0.00 0.00 4.26
3867 4087 4.021016 AGGTCAGTAGAACAGCACTAAAGG 60.021 45.833 0.00 0.00 32.39 3.11
4023 4249 2.421424 GCTGTTCTGATTGATGGTGTCC 59.579 50.000 0.00 0.00 0.00 4.02
4050 4276 3.515602 AGTGATAGGGGATGCCAATTC 57.484 47.619 5.30 0.00 0.00 2.17
4056 4282 0.475906 AGGCAAGTGATAGGGGATGC 59.524 55.000 0.00 0.00 0.00 3.91
4078 4304 9.778741 ACATAAGAACAGAAGACAATAAGAACA 57.221 29.630 0.00 0.00 0.00 3.18
4126 4352 7.922393 ACAGCACTCTCTGATCTGAAAGAAGT 61.922 42.308 9.68 5.64 41.24 3.01
4191 4417 8.761575 CATTACCAAGTAATGCAACATTTTCT 57.238 30.769 12.99 0.00 45.34 2.52
4238 4464 1.079127 CCAGTAAGGTGCCCGACAG 60.079 63.158 0.00 0.00 0.00 3.51
4239 4465 3.065306 CCAGTAAGGTGCCCGACA 58.935 61.111 0.00 0.00 0.00 4.35
4479 4705 5.644188 TCCTCCCAATTTCTGTCAGAATTT 58.356 37.500 15.95 14.99 33.67 1.82
4500 4726 5.023533 TGTGTAACTCCTCTGCATTATCC 57.976 43.478 0.00 0.00 38.04 2.59
4746 4975 7.425606 ACAGACAAATTGTGGAAATGAAGTAC 58.574 34.615 2.20 0.00 0.00 2.73
4760 4990 7.754027 GGAGATGAAGAATCAACAGACAAATTG 59.246 37.037 0.00 0.00 39.49 2.32
4766 4996 7.446001 AAAAGGAGATGAAGAATCAACAGAC 57.554 36.000 0.00 0.00 39.49 3.51
4768 4998 8.558973 ACTAAAAGGAGATGAAGAATCAACAG 57.441 34.615 0.00 0.00 39.49 3.16
4848 5078 5.514274 AACTGTCACCAAAACCATTACTG 57.486 39.130 0.00 0.00 0.00 2.74
4950 5180 1.169661 TTCCGTTTGGTGCATTCGCT 61.170 50.000 0.00 0.00 39.64 4.93
5001 5231 3.222603 GTTGACAGGACCTTGGAATTGT 58.777 45.455 0.00 0.00 0.00 2.71
5135 5365 0.670854 GGAACGTGAGGTGAGAAGGC 60.671 60.000 0.00 0.00 0.00 4.35
5229 5459 0.250727 TTGGGGCAGAACACTAGTGC 60.251 55.000 22.90 8.27 36.42 4.40
5244 5474 5.163513 GCATGTCACAAATTTACTCTTGGG 58.836 41.667 0.00 0.00 0.00 4.12
5465 5712 2.957402 ACAGAGCCAAATGACTTCCA 57.043 45.000 0.00 0.00 0.00 3.53
5680 5927 5.655532 AGCCATGGATATCTGAATATTTGCC 59.344 40.000 18.40 0.00 0.00 4.52
5681 5928 6.770746 AGCCATGGATATCTGAATATTTGC 57.229 37.500 18.40 0.00 0.00 3.68
5725 5972 5.773680 TGGAACGGAGGGAGTATAAGATAAG 59.226 44.000 0.00 0.00 0.00 1.73
5730 5977 4.748277 TTTGGAACGGAGGGAGTATAAG 57.252 45.455 0.00 0.00 0.00 1.73
5731 5978 5.703730 ATTTTGGAACGGAGGGAGTATAA 57.296 39.130 0.00 0.00 0.00 0.98
5732 5979 6.138263 TCTATTTTGGAACGGAGGGAGTATA 58.862 40.000 0.00 0.00 0.00 1.47
5733 5980 4.966805 TCTATTTTGGAACGGAGGGAGTAT 59.033 41.667 0.00 0.00 0.00 2.12
5734 5981 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
5735 5982 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
5736 5983 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
5737 5984 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
5738 5985 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5739 5986 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
5740 5987 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
5741 5988 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
5742 5989 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
5743 5990 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
5744 5991 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
5745 5992 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
5746 5993 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
5747 5994 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
5748 5995 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
5749 5996 9.449719 CTAGTACAAAGTTGGGTCATCTATTTT 57.550 33.333 0.00 0.00 0.00 1.82
5750 5997 7.553044 GCTAGTACAAAGTTGGGTCATCTATTT 59.447 37.037 0.00 0.00 0.00 1.40
5751 5998 7.048512 GCTAGTACAAAGTTGGGTCATCTATT 58.951 38.462 0.00 0.00 0.00 1.73
5752 5999 6.384305 AGCTAGTACAAAGTTGGGTCATCTAT 59.616 38.462 0.00 0.00 0.00 1.98
5753 6000 5.720041 AGCTAGTACAAAGTTGGGTCATCTA 59.280 40.000 0.00 0.00 0.00 1.98
5754 6001 4.532521 AGCTAGTACAAAGTTGGGTCATCT 59.467 41.667 0.00 0.00 0.00 2.90
5755 6002 4.833390 AGCTAGTACAAAGTTGGGTCATC 58.167 43.478 0.00 0.00 0.00 2.92
5756 6003 4.910458 AGCTAGTACAAAGTTGGGTCAT 57.090 40.909 0.00 0.00 0.00 3.06
5757 6004 4.699925 AAGCTAGTACAAAGTTGGGTCA 57.300 40.909 0.00 0.00 0.00 4.02
5758 6005 4.820173 ACAAAGCTAGTACAAAGTTGGGTC 59.180 41.667 0.00 0.00 0.00 4.46
5759 6006 4.788679 ACAAAGCTAGTACAAAGTTGGGT 58.211 39.130 0.00 0.00 0.00 4.51
5760 6007 5.995897 AGTACAAAGCTAGTACAAAGTTGGG 59.004 40.000 23.49 0.00 43.24 4.12
5761 6008 8.597662 TTAGTACAAAGCTAGTACAAAGTTGG 57.402 34.615 23.49 0.00 43.24 3.77
5763 6010 9.828039 ACTTTAGTACAAAGCTAGTACAAAGTT 57.172 29.630 27.23 20.28 42.58 2.66
5764 6011 9.828039 AACTTTAGTACAAAGCTAGTACAAAGT 57.172 29.630 27.23 27.23 44.27 2.66
5791 6038 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
5792 6039 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
5793 6040 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
5794 6041 8.463930 TTCCAAAATAGATGACTCAACTTTGT 57.536 30.769 0.00 0.00 0.00 2.83
5795 6042 9.350357 CATTCCAAAATAGATGACTCAACTTTG 57.650 33.333 0.00 0.00 0.00 2.77
5796 6043 8.526147 CCATTCCAAAATAGATGACTCAACTTT 58.474 33.333 0.00 0.00 0.00 2.66
5797 6044 7.890127 TCCATTCCAAAATAGATGACTCAACTT 59.110 33.333 0.00 0.00 0.00 2.66
5798 6045 7.405292 TCCATTCCAAAATAGATGACTCAACT 58.595 34.615 0.00 0.00 0.00 3.16
5799 6046 7.201767 CCTCCATTCCAAAATAGATGACTCAAC 60.202 40.741 0.00 0.00 0.00 3.18
5800 6047 6.830324 CCTCCATTCCAAAATAGATGACTCAA 59.170 38.462 0.00 0.00 0.00 3.02
5801 6048 6.359804 CCTCCATTCCAAAATAGATGACTCA 58.640 40.000 0.00 0.00 0.00 3.41
5802 6049 5.767168 CCCTCCATTCCAAAATAGATGACTC 59.233 44.000 0.00 0.00 0.00 3.36
5803 6050 5.433051 TCCCTCCATTCCAAAATAGATGACT 59.567 40.000 0.00 0.00 0.00 3.41
5804 6051 5.694995 TCCCTCCATTCCAAAATAGATGAC 58.305 41.667 0.00 0.00 0.00 3.06
5805 6052 5.433051 ACTCCCTCCATTCCAAAATAGATGA 59.567 40.000 0.00 0.00 0.00 2.92
5806 6053 5.699143 ACTCCCTCCATTCCAAAATAGATG 58.301 41.667 0.00 0.00 0.00 2.90
5807 6054 7.654287 ATACTCCCTCCATTCCAAAATAGAT 57.346 36.000 0.00 0.00 0.00 1.98
5808 6055 8.575736 TTATACTCCCTCCATTCCAAAATAGA 57.424 34.615 0.00 0.00 0.00 1.98
5809 6056 9.236006 CATTATACTCCCTCCATTCCAAAATAG 57.764 37.037 0.00 0.00 0.00 1.73
5810 6057 8.732854 ACATTATACTCCCTCCATTCCAAAATA 58.267 33.333 0.00 0.00 0.00 1.40
5811 6058 7.595488 ACATTATACTCCCTCCATTCCAAAAT 58.405 34.615 0.00 0.00 0.00 1.82
5812 6059 6.980577 ACATTATACTCCCTCCATTCCAAAA 58.019 36.000 0.00 0.00 0.00 2.44
5813 6060 6.590656 ACATTATACTCCCTCCATTCCAAA 57.409 37.500 0.00 0.00 0.00 3.28
5814 6061 6.590656 AACATTATACTCCCTCCATTCCAA 57.409 37.500 0.00 0.00 0.00 3.53
5815 6062 7.888514 ATAACATTATACTCCCTCCATTCCA 57.111 36.000 0.00 0.00 0.00 3.53
5816 6063 9.588096 AAAATAACATTATACTCCCTCCATTCC 57.412 33.333 0.00 0.00 0.00 3.01
5819 6066 9.574516 GTGAAAATAACATTATACTCCCTCCAT 57.425 33.333 0.00 0.00 0.00 3.41
5820 6067 8.553153 TGTGAAAATAACATTATACTCCCTCCA 58.447 33.333 0.00 0.00 0.00 3.86
5821 6068 8.837389 GTGTGAAAATAACATTATACTCCCTCC 58.163 37.037 0.00 0.00 0.00 4.30
5822 6069 8.837389 GGTGTGAAAATAACATTATACTCCCTC 58.163 37.037 0.00 0.00 0.00 4.30
5823 6070 8.333235 TGGTGTGAAAATAACATTATACTCCCT 58.667 33.333 0.00 0.00 0.00 4.20
5824 6071 8.514330 TGGTGTGAAAATAACATTATACTCCC 57.486 34.615 0.00 0.00 0.00 4.30
5839 6086 2.093764 CAGGGCTTGTTTGGTGTGAAAA 60.094 45.455 0.00 0.00 0.00 2.29
5889 6136 6.147164 ACATGAAACGACATAAATGAAGACGT 59.853 34.615 0.00 0.00 0.00 4.34
5890 6137 6.534059 ACATGAAACGACATAAATGAAGACG 58.466 36.000 0.00 0.00 0.00 4.18
5891 6138 8.656849 ACTACATGAAACGACATAAATGAAGAC 58.343 33.333 0.00 0.00 0.00 3.01
5892 6139 8.655970 CACTACATGAAACGACATAAATGAAGA 58.344 33.333 0.00 0.00 0.00 2.87
5893 6140 8.655970 TCACTACATGAAACGACATAAATGAAG 58.344 33.333 0.00 0.00 33.02 3.02
5894 6141 8.541133 TCACTACATGAAACGACATAAATGAA 57.459 30.769 0.00 0.00 33.02 2.57
5896 6143 8.603181 TCATCACTACATGAAACGACATAAATG 58.397 33.333 0.00 0.00 41.93 2.32
5897 6144 8.716646 TCATCACTACATGAAACGACATAAAT 57.283 30.769 0.00 0.00 41.93 1.40
5900 6148 9.981114 AATATCATCACTACATGAAACGACATA 57.019 29.630 0.00 0.00 41.93 2.29
5905 6153 9.034544 TCTTCAATATCATCACTACATGAAACG 57.965 33.333 0.00 0.00 41.93 3.60
5912 6160 8.615211 GCAAATGTCTTCAATATCATCACTACA 58.385 33.333 0.00 0.00 0.00 2.74
5934 6182 4.199432 ACACAAACTGGAAACATGCAAA 57.801 36.364 0.00 0.00 41.51 3.68
5942 6190 7.572353 GCGATATACTGAAACACAAACTGGAAA 60.572 37.037 0.00 0.00 0.00 3.13
5966 6214 0.460284 AGCAACAGAATCCTACGGCG 60.460 55.000 4.80 4.80 0.00 6.46
5970 6218 3.477899 GTTGCAGCAACAGAATCCTAC 57.522 47.619 29.80 2.05 43.09 3.18
5980 6228 2.617250 TCGATGAATGTTGCAGCAAC 57.383 45.000 28.44 28.44 43.78 4.17
5987 6235 2.855963 GCATTGCCTTCGATGAATGTTG 59.144 45.455 0.00 1.52 36.40 3.33
5989 6237 2.357009 GAGCATTGCCTTCGATGAATGT 59.643 45.455 4.70 3.05 36.40 2.71
5992 6240 2.011947 CAGAGCATTGCCTTCGATGAA 58.988 47.619 4.70 0.00 36.40 2.57
5994 6242 1.660167 TCAGAGCATTGCCTTCGATG 58.340 50.000 4.70 0.00 37.19 3.84
5995 6243 2.408271 TTCAGAGCATTGCCTTCGAT 57.592 45.000 4.70 0.00 0.00 3.59
5996 6244 2.183478 TTTCAGAGCATTGCCTTCGA 57.817 45.000 4.70 0.00 0.00 3.71
5997 6245 3.624861 AGTATTTCAGAGCATTGCCTTCG 59.375 43.478 4.70 0.00 0.00 3.79
6029 6278 4.154942 ACATGCCTGAGACAAAAGGAAAT 58.845 39.130 0.00 0.00 35.40 2.17
6077 6328 0.119155 TCCTCACCTGGTCCCATCTT 59.881 55.000 0.00 0.00 0.00 2.40
6182 6434 2.750166 TGTAAGAAGACGGCTGAGAGAG 59.250 50.000 0.00 0.00 0.00 3.20
6215 6467 0.902531 ACCACCATCAGAACGGGTAG 59.097 55.000 0.00 0.00 32.55 3.18
6220 6472 0.518636 CTGCAACCACCATCAGAACG 59.481 55.000 0.00 0.00 0.00 3.95
6221 6473 1.896220 TCTGCAACCACCATCAGAAC 58.104 50.000 0.00 0.00 33.17 3.01
6224 6476 1.471287 CACATCTGCAACCACCATCAG 59.529 52.381 0.00 0.00 0.00 2.90
6227 6518 0.612732 CCCACATCTGCAACCACCAT 60.613 55.000 0.00 0.00 0.00 3.55
6233 6524 3.762293 TGTGCCCACATCTGCAAC 58.238 55.556 0.00 0.00 39.57 4.17
6324 6615 3.948719 GCCCGGACAACCTCCACA 61.949 66.667 0.73 0.00 39.39 4.17
6374 6665 3.291383 CCCGCGCCAAAACTTCCA 61.291 61.111 0.00 0.00 0.00 3.53
6397 6691 3.260269 TCTCTCTTTTCCTCCTGACCA 57.740 47.619 0.00 0.00 0.00 4.02
6402 6696 3.906846 TCTTGCTTCTCTCTTTTCCTCCT 59.093 43.478 0.00 0.00 0.00 3.69
6472 6775 1.559682 GGAAGGCTACATGGGAAGACA 59.440 52.381 0.00 0.00 0.00 3.41
6477 6780 0.911769 CACAGGAAGGCTACATGGGA 59.088 55.000 0.00 0.00 0.00 4.37
6586 6918 7.581213 AACTCTTTCACCAATCAATAACACA 57.419 32.000 0.00 0.00 0.00 3.72
6818 7172 2.753296 TGCAACAAACATTAGCAAGCC 58.247 42.857 0.00 0.00 31.42 4.35
6819 7173 4.792528 TTTGCAACAAACATTAGCAAGC 57.207 36.364 0.00 0.00 44.75 4.01
6837 7191 9.722056 GTGGTTAAGCACAGAGATAAATATTTG 57.278 33.333 28.22 0.00 0.00 2.32
6849 7203 4.642437 TGACAAATTGTGGTTAAGCACAGA 59.358 37.500 32.11 24.61 32.51 3.41
6850 7204 4.930963 TGACAAATTGTGGTTAAGCACAG 58.069 39.130 32.11 24.76 32.51 3.66
6871 7225 4.370917 CCTTGTTTTTGGTGTCAGGATTG 58.629 43.478 0.00 0.00 0.00 2.67
6872 7226 3.181466 GCCTTGTTTTTGGTGTCAGGATT 60.181 43.478 0.00 0.00 0.00 3.01
6873 7227 2.365293 GCCTTGTTTTTGGTGTCAGGAT 59.635 45.455 0.00 0.00 0.00 3.24
6874 7228 1.754226 GCCTTGTTTTTGGTGTCAGGA 59.246 47.619 0.00 0.00 0.00 3.86
6875 7229 1.202521 GGCCTTGTTTTTGGTGTCAGG 60.203 52.381 0.00 0.00 0.00 3.86
6881 7248 6.680148 AATTGTATAGGCCTTGTTTTTGGT 57.320 33.333 12.58 0.00 0.00 3.67
6886 7253 6.719370 TGAGACAAATTGTATAGGCCTTGTTT 59.281 34.615 12.58 0.73 0.00 2.83
7023 7390 9.646336 CGAACAAATACCAATAACTACAATAGC 57.354 33.333 0.00 0.00 0.00 2.97
7025 7392 9.887629 TCCGAACAAATACCAATAACTACAATA 57.112 29.630 0.00 0.00 0.00 1.90
7026 7393 8.795842 TCCGAACAAATACCAATAACTACAAT 57.204 30.769 0.00 0.00 0.00 2.71
7027 7394 8.618702 TTCCGAACAAATACCAATAACTACAA 57.381 30.769 0.00 0.00 0.00 2.41
7028 7395 8.618702 TTTCCGAACAAATACCAATAACTACA 57.381 30.769 0.00 0.00 0.00 2.74
7029 7396 9.333497 GTTTTCCGAACAAATACCAATAACTAC 57.667 33.333 0.00 0.00 0.00 2.73
7030 7397 8.229137 CGTTTTCCGAACAAATACCAATAACTA 58.771 33.333 0.00 0.00 39.56 2.24
7031 7398 7.079475 CGTTTTCCGAACAAATACCAATAACT 58.921 34.615 0.00 0.00 39.56 2.24
7032 7399 6.857451 ACGTTTTCCGAACAAATACCAATAAC 59.143 34.615 0.00 0.00 40.70 1.89
7033 7400 6.968250 ACGTTTTCCGAACAAATACCAATAA 58.032 32.000 0.00 0.00 40.70 1.40
7034 7401 6.557291 ACGTTTTCCGAACAAATACCAATA 57.443 33.333 0.00 0.00 40.70 1.90
7035 7402 5.441709 ACGTTTTCCGAACAAATACCAAT 57.558 34.783 0.00 0.00 40.70 3.16
7036 7403 4.897025 ACGTTTTCCGAACAAATACCAA 57.103 36.364 0.00 0.00 40.70 3.67
7037 7404 4.897025 AACGTTTTCCGAACAAATACCA 57.103 36.364 0.00 0.00 40.70 3.25
7038 7405 4.085466 GCAAACGTTTTCCGAACAAATACC 60.085 41.667 11.66 0.00 40.70 2.73
7039 7406 4.373226 CGCAAACGTTTTCCGAACAAATAC 60.373 41.667 20.25 0.00 40.70 1.89
7040 7407 3.724751 CGCAAACGTTTTCCGAACAAATA 59.275 39.130 20.25 0.00 40.70 1.40
7041 7408 2.532317 CGCAAACGTTTTCCGAACAAAT 59.468 40.909 20.25 0.00 40.70 2.32
7042 7409 1.912110 CGCAAACGTTTTCCGAACAAA 59.088 42.857 20.25 0.00 40.70 2.83
7043 7410 1.129998 TCGCAAACGTTTTCCGAACAA 59.870 42.857 23.37 7.96 41.18 2.83
7044 7411 0.725686 TCGCAAACGTTTTCCGAACA 59.274 45.000 23.37 8.24 41.18 3.18
7045 7412 1.812662 TTCGCAAACGTTTTCCGAAC 58.187 45.000 28.24 10.04 41.18 3.95
7046 7413 2.031807 TCATTCGCAAACGTTTTCCGAA 59.968 40.909 31.26 31.26 41.36 4.30
7047 7414 1.598132 TCATTCGCAAACGTTTTCCGA 59.402 42.857 22.35 22.35 41.18 4.55
7048 7415 1.706597 GTCATTCGCAAACGTTTTCCG 59.293 47.619 11.66 16.48 41.18 4.30
7049 7416 1.706597 CGTCATTCGCAAACGTTTTCC 59.293 47.619 11.66 4.60 41.18 3.13
7075 7442 2.747460 GGATGCACGAAGCCAGCA 60.747 61.111 0.00 0.00 44.83 4.41
7082 7449 0.310543 GCTTTGTGTGGATGCACGAA 59.689 50.000 13.03 5.25 41.94 3.85
7083 7450 1.514678 GGCTTTGTGTGGATGCACGA 61.515 55.000 13.03 0.00 41.94 4.35
7084 7451 1.081242 GGCTTTGTGTGGATGCACG 60.081 57.895 13.03 0.00 41.94 5.34
7085 7452 1.081242 CGGCTTTGTGTGGATGCAC 60.081 57.895 10.90 10.90 39.65 4.57
7086 7453 1.106351 AACGGCTTTGTGTGGATGCA 61.106 50.000 0.00 0.00 0.00 3.96
7087 7454 0.387239 GAACGGCTTTGTGTGGATGC 60.387 55.000 0.00 0.00 0.00 3.91
7088 7455 0.240945 GGAACGGCTTTGTGTGGATG 59.759 55.000 0.00 0.00 0.00 3.51
7089 7456 0.110486 AGGAACGGCTTTGTGTGGAT 59.890 50.000 0.00 0.00 0.00 3.41
7090 7457 0.106918 AAGGAACGGCTTTGTGTGGA 60.107 50.000 0.00 0.00 0.00 4.02
7092 7459 0.594796 GCAAGGAACGGCTTTGTGTG 60.595 55.000 4.77 0.00 36.09 3.82
7093 7460 1.733526 GCAAGGAACGGCTTTGTGT 59.266 52.632 4.77 0.00 36.09 3.72
7095 7462 3.030652 CGCAAGGAACGGCTTTGT 58.969 55.556 4.77 0.00 36.09 2.83
7096 7463 2.429069 GCGCAAGGAACGGCTTTG 60.429 61.111 0.30 0.00 36.71 2.77
7097 7464 4.025401 CGCGCAAGGAACGGCTTT 62.025 61.111 8.75 0.00 38.28 3.51
7121 7488 1.448985 CACGGGTCCACCAAATACAG 58.551 55.000 0.00 0.00 40.22 2.74
7154 7521 1.143073 CGGGGGAAAAGATAAGGAGGG 59.857 57.143 0.00 0.00 0.00 4.30
7155 7522 1.477014 GCGGGGGAAAAGATAAGGAGG 60.477 57.143 0.00 0.00 0.00 4.30
7159 7526 2.289565 GAGTGCGGGGGAAAAGATAAG 58.710 52.381 0.00 0.00 0.00 1.73
7162 7529 1.303282 GGAGTGCGGGGGAAAAGAT 59.697 57.895 0.00 0.00 0.00 2.40
7163 7530 1.497309 ATGGAGTGCGGGGGAAAAGA 61.497 55.000 0.00 0.00 0.00 2.52
7166 7533 2.674754 GATGGAGTGCGGGGGAAA 59.325 61.111 0.00 0.00 0.00 3.13
7167 7534 3.407967 GGATGGAGTGCGGGGGAA 61.408 66.667 0.00 0.00 0.00 3.97
7171 7538 2.445845 TAGGGGATGGAGTGCGGG 60.446 66.667 0.00 0.00 0.00 6.13
7172 7539 2.808206 GGTAGGGGATGGAGTGCGG 61.808 68.421 0.00 0.00 0.00 5.69
7187 7554 3.085296 GCAAGGGTAGGGGCGGTA 61.085 66.667 0.00 0.00 0.00 4.02
7197 7573 2.108952 AGAGAAGAAACATGGCAAGGGT 59.891 45.455 0.00 0.00 0.00 4.34
7201 7577 4.104383 AGGAAGAGAAGAAACATGGCAA 57.896 40.909 0.00 0.00 0.00 4.52
7206 7582 4.323104 CGAGGGAAGGAAGAGAAGAAACAT 60.323 45.833 0.00 0.00 0.00 2.71
7226 7602 4.430423 GTTTCGTGGCAGCGCGAG 62.430 66.667 12.10 1.41 38.40 5.03
7227 7603 3.561217 TAGTTTCGTGGCAGCGCGA 62.561 57.895 12.10 6.60 35.17 5.87
7237 7613 4.193090 TGTGTGATTTGTGGTAGTTTCGT 58.807 39.130 0.00 0.00 0.00 3.85
7244 7620 1.879380 GCAGCTGTGTGATTTGTGGTA 59.121 47.619 16.64 0.00 0.00 3.25
7270 7649 2.261671 GGAGAGGTCTTTCGCGCA 59.738 61.111 8.75 0.00 0.00 6.09
7271 7650 2.509561 GGGAGAGGTCTTTCGCGC 60.510 66.667 0.00 0.00 0.00 6.86
7272 7651 2.202623 CGGGAGAGGTCTTTCGCG 60.203 66.667 12.02 12.02 42.01 5.87
7273 7652 2.509561 GCGGGAGAGGTCTTTCGC 60.510 66.667 10.58 10.58 39.18 4.70
7274 7653 1.961180 ATGGCGGGAGAGGTCTTTCG 61.961 60.000 0.00 0.00 0.00 3.46
7287 7666 3.142162 TGGATTGCAGCATGGCGG 61.142 61.111 0.00 0.00 35.86 6.13
7288 7667 2.103538 GTGGATTGCAGCATGGCG 59.896 61.111 0.00 0.00 35.86 5.69
7341 7720 0.396695 CCCTGCTTGGATCCAGCATT 60.397 55.000 27.99 0.00 37.95 3.56
7342 7721 1.229359 CCCTGCTTGGATCCAGCAT 59.771 57.895 27.99 0.00 37.95 3.79
7354 7733 1.332195 GTTCCAGCTTTTTCCCTGCT 58.668 50.000 0.00 0.00 37.56 4.24
7355 7734 0.318441 GGTTCCAGCTTTTTCCCTGC 59.682 55.000 0.00 0.00 0.00 4.85
7378 7757 3.827876 ACAACATTGCAACATCTCATGGA 59.172 39.130 0.00 0.00 33.60 3.41
7418 7819 4.824479 AAAAATGTGCCCCCTTATTCTG 57.176 40.909 0.00 0.00 0.00 3.02
7456 7857 1.066716 TCGCCGGTTAAAGCATACACT 60.067 47.619 1.90 0.00 0.00 3.55
7464 7865 3.498082 CAAATTTCCTCGCCGGTTAAAG 58.502 45.455 1.90 0.00 0.00 1.85
7466 7867 1.200484 GCAAATTTCCTCGCCGGTTAA 59.800 47.619 1.90 0.00 0.00 2.01
7467 7868 0.806241 GCAAATTTCCTCGCCGGTTA 59.194 50.000 1.90 0.00 0.00 2.85
7481 7882 0.538118 AAATGGCGGATGCAGCAAAT 59.462 45.000 3.51 0.00 45.35 2.32
7488 7889 1.731709 GGAAAAACAAATGGCGGATGC 59.268 47.619 0.00 0.00 41.71 3.91
7493 7894 2.810439 TCCAGGAAAAACAAATGGCG 57.190 45.000 0.00 0.00 0.00 5.69
7495 7896 6.586082 CGATAGTTTCCAGGAAAAACAAATGG 59.414 38.462 16.70 4.09 38.73 3.16
7496 7897 6.089417 GCGATAGTTTCCAGGAAAAACAAATG 59.911 38.462 16.70 5.08 38.73 2.32
7497 7898 6.156519 GCGATAGTTTCCAGGAAAAACAAAT 58.843 36.000 16.70 5.92 38.73 2.32
7499 7900 4.022676 GGCGATAGTTTCCAGGAAAAACAA 60.023 41.667 16.70 3.00 38.73 2.83
7544 7945 1.189752 TCCAGCAAAAACACAAGCCA 58.810 45.000 0.00 0.00 0.00 4.75
7545 7946 1.933181 GTTCCAGCAAAAACACAAGCC 59.067 47.619 0.00 0.00 0.00 4.35
7567 7968 4.705023 GGTGGTAGTAGCAAAAATGGATGT 59.295 41.667 3.06 0.00 0.00 3.06
7570 7972 4.650972 AGGTGGTAGTAGCAAAAATGGA 57.349 40.909 3.06 0.00 0.00 3.41
7574 7976 5.523438 CCAAAAGGTGGTAGTAGCAAAAA 57.477 39.130 3.06 0.00 43.20 1.94
7589 7991 3.140623 CAATCCAGCAAAACCCAAAAGG 58.859 45.455 0.00 0.00 43.78 3.11
7590 7992 2.549329 GCAATCCAGCAAAACCCAAAAG 59.451 45.455 0.00 0.00 0.00 2.27
7675 8097 4.833469 TGCAACATTAATACGACGACAG 57.167 40.909 0.00 0.00 0.00 3.51
7676 8098 4.143073 GGTTGCAACATTAATACGACGACA 60.143 41.667 29.55 0.00 0.00 4.35
7680 8102 5.447279 CCTCTGGTTGCAACATTAATACGAC 60.447 44.000 29.55 9.72 0.00 4.34
7684 8106 4.929479 ACCCTCTGGTTGCAACATTAATA 58.071 39.130 29.55 8.68 44.75 0.98
7707 8129 2.393768 AAGCTCGCCGATGTTGCAG 61.394 57.895 0.00 0.00 0.00 4.41
7708 8130 2.358615 AAGCTCGCCGATGTTGCA 60.359 55.556 0.00 0.00 0.00 4.08
7715 8137 0.586319 CAAGAAAACAAGCTCGCCGA 59.414 50.000 0.00 0.00 0.00 5.54
7717 8139 0.312102 AGCAAGAAAACAAGCTCGCC 59.688 50.000 0.00 0.00 30.05 5.54
7718 8140 2.969443 TAGCAAGAAAACAAGCTCGC 57.031 45.000 0.00 0.00 38.47 5.03
7725 8147 2.811431 CACCGGTCATAGCAAGAAAACA 59.189 45.455 2.59 0.00 0.00 2.83
7730 8152 1.220749 GCCACCGGTCATAGCAAGA 59.779 57.895 2.59 0.00 0.00 3.02
7739 8161 4.681978 ACTTCGCTGCCACCGGTC 62.682 66.667 2.59 0.00 0.00 4.79
7745 8167 0.814457 ACAAAAACACTTCGCTGCCA 59.186 45.000 0.00 0.00 0.00 4.92
7750 8172 3.507786 ACTTCCAACAAAAACACTTCGC 58.492 40.909 0.00 0.00 0.00 4.70
7754 8176 5.654650 TGTCCATACTTCCAACAAAAACACT 59.345 36.000 0.00 0.00 0.00 3.55
7755 8177 5.897050 TGTCCATACTTCCAACAAAAACAC 58.103 37.500 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.