Multiple sequence alignment - TraesCS6A01G405300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G405300 chr6A 100.000 3521 0 0 1 3521 611337170 611333650 0.000000e+00 6503.0
1 TraesCS6A01G405300 chr6A 97.703 566 13 0 451 1016 21752646 21753211 0.000000e+00 974.0
2 TraesCS6A01G405300 chr6A 97.695 564 13 0 451 1014 562824950 562824387 0.000000e+00 970.0
3 TraesCS6A01G405300 chr6A 96.466 566 20 0 452 1017 22680193 22680758 0.000000e+00 935.0
4 TraesCS6A01G405300 chr6A 84.340 447 70 0 1 447 21337800 21337354 4.170000e-119 438.0
5 TraesCS6A01G405300 chr6A 81.818 385 68 2 3 385 13378798 13379182 4.380000e-84 322.0
6 TraesCS6A01G405300 chr6A 83.936 249 38 2 1021 1268 21337351 21337104 1.630000e-58 237.0
7 TraesCS6A01G405300 chr6B 85.966 1988 182 43 1014 2948 708729184 708727241 0.000000e+00 2036.0
8 TraesCS6A01G405300 chr6B 86.979 1582 183 13 1014 2580 708722340 708720767 0.000000e+00 1759.0
9 TraesCS6A01G405300 chr6B 92.239 451 35 0 1 451 708722782 708722332 1.070000e-179 640.0
10 TraesCS6A01G405300 chr6B 92.018 451 36 0 1 451 708729626 708729176 4.960000e-178 634.0
11 TraesCS6A01G405300 chr6B 88.179 313 15 6 2535 2847 708720770 708720480 1.550000e-93 353.0
12 TraesCS6A01G405300 chr5A 97.687 562 13 0 452 1013 260022857 260022296 0.000000e+00 966.0
13 TraesCS6A01G405300 chr3A 96.701 576 18 1 451 1026 253595635 253595061 0.000000e+00 957.0
14 TraesCS6A01G405300 chr4A 96.803 563 18 0 451 1013 37612990 37613552 0.000000e+00 941.0
15 TraesCS6A01G405300 chr4A 95.819 574 23 1 451 1024 11292681 11292109 0.000000e+00 926.0
16 TraesCS6A01G405300 chr4A 86.441 59 8 0 169 227 743562896 743562954 8.160000e-07 65.8
17 TraesCS6A01G405300 chr6D 85.922 895 100 14 1433 2308 464778341 464777454 0.000000e+00 931.0
18 TraesCS6A01G405300 chr6D 78.751 913 169 17 1023 1924 464797780 464796882 3.920000e-164 588.0
19 TraesCS6A01G405300 chr6D 88.969 417 38 5 1014 1429 464790494 464790085 3.140000e-140 508.0
20 TraesCS6A01G405300 chr6D 87.583 451 32 3 1 451 464790912 464790486 5.250000e-138 501.0
21 TraesCS6A01G405300 chr6D 84.116 447 71 0 1 447 21706807 21706361 1.940000e-117 433.0
22 TraesCS6A01G405300 chr6D 88.011 367 26 9 2436 2801 464769863 464769514 5.440000e-113 418.0
23 TraesCS6A01G405300 chr6D 76.430 874 122 44 2034 2851 464796775 464795930 2.550000e-106 396.0
24 TraesCS6A01G405300 chr6D 89.068 311 23 6 2975 3281 464769429 464769126 3.320000e-100 375.0
25 TraesCS6A01G405300 chr6D 75.918 490 97 18 2031 2513 21705456 21704981 7.600000e-57 231.0
26 TraesCS6A01G405300 chr7A 96.296 567 19 1 451 1017 607287700 607288264 0.000000e+00 929.0
27 TraesCS6A01G405300 chr1B 95.296 574 25 2 451 1024 332164889 332164318 0.000000e+00 909.0
28 TraesCS6A01G405300 chr3B 83.803 142 19 4 1058 1197 804228975 804229114 7.930000e-27 132.0
29 TraesCS6A01G405300 chr3B 82.143 140 25 0 1058 1197 804171366 804171505 1.720000e-23 121.0
30 TraesCS6A01G405300 chr2A 79.532 171 27 5 1059 1225 605400198 605400364 7.990000e-22 115.0
31 TraesCS6A01G405300 chr3D 80.851 141 25 2 1058 1197 597480983 597481122 3.720000e-20 110.0
32 TraesCS6A01G405300 chr2D 86.441 59 8 0 169 227 2506602 2506660 8.160000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G405300 chr6A 611333650 611337170 3520 True 6503.000000 6503 100.000000 1 3521 1 chr6A.!!$R2 3520
1 TraesCS6A01G405300 chr6A 21752646 21753211 565 False 974.000000 974 97.703000 451 1016 1 chr6A.!!$F2 565
2 TraesCS6A01G405300 chr6A 562824387 562824950 563 True 970.000000 970 97.695000 451 1014 1 chr6A.!!$R1 563
3 TraesCS6A01G405300 chr6A 22680193 22680758 565 False 935.000000 935 96.466000 452 1017 1 chr6A.!!$F3 565
4 TraesCS6A01G405300 chr6A 21337104 21337800 696 True 337.500000 438 84.138000 1 1268 2 chr6A.!!$R3 1267
5 TraesCS6A01G405300 chr6B 708727241 708729626 2385 True 1335.000000 2036 88.992000 1 2948 2 chr6B.!!$R2 2947
6 TraesCS6A01G405300 chr6B 708720480 708722782 2302 True 917.333333 1759 89.132333 1 2847 3 chr6B.!!$R1 2846
7 TraesCS6A01G405300 chr5A 260022296 260022857 561 True 966.000000 966 97.687000 452 1013 1 chr5A.!!$R1 561
8 TraesCS6A01G405300 chr3A 253595061 253595635 574 True 957.000000 957 96.701000 451 1026 1 chr3A.!!$R1 575
9 TraesCS6A01G405300 chr4A 37612990 37613552 562 False 941.000000 941 96.803000 451 1013 1 chr4A.!!$F1 562
10 TraesCS6A01G405300 chr4A 11292109 11292681 572 True 926.000000 926 95.819000 451 1024 1 chr4A.!!$R1 573
11 TraesCS6A01G405300 chr6D 464777454 464778341 887 True 931.000000 931 85.922000 1433 2308 1 chr6D.!!$R1 875
12 TraesCS6A01G405300 chr6D 464790085 464790912 827 True 504.500000 508 88.276000 1 1429 2 chr6D.!!$R4 1428
13 TraesCS6A01G405300 chr6D 464795930 464797780 1850 True 492.000000 588 77.590500 1023 2851 2 chr6D.!!$R5 1828
14 TraesCS6A01G405300 chr6D 464769126 464769863 737 True 396.500000 418 88.539500 2436 3281 2 chr6D.!!$R3 845
15 TraesCS6A01G405300 chr6D 21704981 21706807 1826 True 332.000000 433 80.017000 1 2513 2 chr6D.!!$R2 2512
16 TraesCS6A01G405300 chr7A 607287700 607288264 564 False 929.000000 929 96.296000 451 1017 1 chr7A.!!$F1 566
17 TraesCS6A01G405300 chr1B 332164318 332164889 571 True 909.000000 909 95.296000 451 1024 1 chr1B.!!$R1 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 259 0.593128 CAACCAAGAGCGTTGGGAAG 59.407 55.0 20.96 9.41 43.71 3.46 F
1275 1276 0.324614 TCCACCTGCATGACGATTGT 59.675 50.0 0.00 0.00 0.00 2.71 F
2333 2382 0.669625 GTAGGGTGTCACCAGAACGC 60.670 60.0 23.48 5.01 41.02 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1606 1634 0.739813 GTTCGAGCGGCATACCAACT 60.740 55.0 1.45 0.0 34.57 3.16 R
2390 2439 0.109412 AGCACGGTAGTCGCTGTTAC 60.109 55.0 0.00 0.0 43.89 2.50 R
3421 3625 0.028505 CGATTTGGCCTTCATGCGAG 59.971 55.0 3.32 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.751544 TGATGTGGCTGAGGCATGC 60.752 57.895 13.12 9.90 40.92 4.06
83 84 2.096013 GGAAATGAAGCCACTTAGCGAC 59.904 50.000 0.00 0.00 38.01 5.19
150 151 2.651382 AACTTACCCTCGCCAGTTTT 57.349 45.000 0.00 0.00 0.00 2.43
209 210 6.001460 TGGTATGCCACTTGCTATTATTACC 58.999 40.000 0.00 0.00 40.46 2.85
240 241 1.148310 GCTAGCAAGTGAACGCTTCA 58.852 50.000 10.63 0.00 39.70 3.02
258 259 0.593128 CAACCAAGAGCGTTGGGAAG 59.407 55.000 20.96 9.41 43.71 3.46
264 265 4.163458 ACCAAGAGCGTTGGGAAGATATAA 59.837 41.667 20.96 0.00 43.71 0.98
295 296 5.378332 TCTAGGTTCGGGAACAAATTTCAA 58.622 37.500 13.08 0.00 42.85 2.69
317 318 5.796502 AGTTGGAAGGGATGAGGAAAATA 57.203 39.130 0.00 0.00 0.00 1.40
343 344 3.577649 TCTCAGCTACAAGAACCTTCG 57.422 47.619 0.00 0.00 0.00 3.79
372 373 8.394971 TCATCTCAAGACATGTTTGTTGTATT 57.605 30.769 0.00 0.00 35.79 1.89
398 399 4.283722 GGTATGTATCCCGAGGACTTCAAT 59.716 45.833 0.00 0.00 32.98 2.57
433 434 6.040209 TCATTTGGAACTTCAATGGATTGG 57.960 37.500 0.00 0.00 38.30 3.16
625 626 5.709631 TGCTCAAAAATGCCATTAGACACTA 59.290 36.000 0.00 0.00 0.00 2.74
912 913 1.412343 GGTGTCCAGTGGCATTTTTGT 59.588 47.619 3.51 0.00 0.00 2.83
972 973 6.775629 AGTTGAAATTCCTAGTGGCAAAACTA 59.224 34.615 0.00 0.00 0.00 2.24
1033 1034 9.907229 AAACCCTTATTAGTAAAGAGAATGGAG 57.093 33.333 0.00 0.00 0.00 3.86
1036 1037 9.549078 CCCTTATTAGTAAAGAGAATGGAGAAC 57.451 37.037 0.00 0.00 0.00 3.01
1045 1046 3.199508 AGAGAATGGAGAACATGTGGAGG 59.800 47.826 0.00 0.00 40.44 4.30
1056 1057 0.773644 ATGTGGAGGAGGTTGCAAGT 59.226 50.000 0.00 0.00 0.00 3.16
1125 1126 4.279169 AGATTTGACAACTGTGGATTGGTG 59.721 41.667 0.00 0.00 0.00 4.17
1242 1243 6.239289 CCATCACAAAACTGGATAACAAGGTT 60.239 38.462 0.00 0.00 31.38 3.50
1269 1270 0.610174 TGTCTCTCCACCTGCATGAC 59.390 55.000 0.00 0.00 0.00 3.06
1273 1274 0.904649 TCTCCACCTGCATGACGATT 59.095 50.000 0.00 0.00 0.00 3.34
1274 1275 1.012086 CTCCACCTGCATGACGATTG 58.988 55.000 0.00 0.00 0.00 2.67
1275 1276 0.324614 TCCACCTGCATGACGATTGT 59.675 50.000 0.00 0.00 0.00 2.71
1280 1281 2.226437 ACCTGCATGACGATTGTGAAAC 59.774 45.455 0.00 0.00 37.35 2.78
1285 1286 4.142838 TGCATGACGATTGTGAAACTGATC 60.143 41.667 0.00 0.00 38.04 2.92
1337 1338 4.153655 GTCCCAAGTTCGGACTTTTATGAC 59.846 45.833 6.29 7.48 43.48 3.06
1342 1343 6.428771 CCAAGTTCGGACTTTTATGACCTTTA 59.571 38.462 6.29 0.00 43.48 1.85
1343 1344 7.295930 CAAGTTCGGACTTTTATGACCTTTAC 58.704 38.462 6.29 0.00 43.48 2.01
1345 1346 7.222161 AGTTCGGACTTTTATGACCTTTACTT 58.778 34.615 0.00 0.00 29.87 2.24
1414 1415 8.162878 AGTTCTGCATATTGAACATTATGGAG 57.837 34.615 21.02 21.02 43.38 3.86
1417 1418 9.625747 TTCTGCATATTGAACATTATGGAGTTA 57.374 29.630 23.50 16.18 40.63 2.24
1441 1445 2.139118 GAGTTGACTTGACTGGACTGC 58.861 52.381 0.00 0.00 0.00 4.40
1474 1478 3.743396 CCAGCTGAGATATTTAGCGGTTC 59.257 47.826 17.39 0.00 42.10 3.62
1482 1486 5.869579 AGATATTTAGCGGTTCATGATGGT 58.130 37.500 0.00 0.00 0.00 3.55
1534 1559 2.423577 GGCTACGACACTTGGAAACAT 58.576 47.619 0.00 0.00 42.32 2.71
1543 1568 6.206634 ACGACACTTGGAAACATTTGATGTAT 59.793 34.615 0.00 0.00 44.07 2.29
1544 1569 7.389330 ACGACACTTGGAAACATTTGATGTATA 59.611 33.333 0.00 0.00 44.07 1.47
1556 1581 9.734620 AACATTTGATGTATATGAAAATGTCCG 57.265 29.630 16.59 0.00 45.75 4.79
1569 1597 2.225068 ATGTCCGTCATCCATTCGAC 57.775 50.000 0.00 0.00 29.76 4.20
1606 1634 3.753815 TGCCTGATGTTCTTGAATGTGA 58.246 40.909 0.00 0.00 0.00 3.58
1615 1643 6.558771 TGTTCTTGAATGTGAGTTGGTATG 57.441 37.500 0.00 0.00 0.00 2.39
1638 1666 2.017049 GCTCGAACACCTTATGGCATT 58.983 47.619 4.78 0.00 36.63 3.56
1666 1694 4.240888 CATGAAGTCCCTGCGATATGTAG 58.759 47.826 0.00 0.00 0.00 2.74
1671 1699 4.411927 AGTCCCTGCGATATGTAGAAGAT 58.588 43.478 0.00 0.00 30.84 2.40
1675 1703 5.304357 TCCCTGCGATATGTAGAAGATTTCA 59.696 40.000 0.00 0.00 30.84 2.69
1693 1721 7.954835 AGATTTCAATTTGATGGACAACTCAA 58.045 30.769 0.00 0.00 38.29 3.02
1816 1850 2.555757 CTGTGCTCTTCTTTGGGGAAAG 59.444 50.000 0.00 0.00 0.00 2.62
1819 1853 1.807142 GCTCTTCTTTGGGGAAAGTCG 59.193 52.381 0.00 0.00 0.00 4.18
1861 1895 2.221055 GGTTTGTATATCGAAGGCTGCG 59.779 50.000 9.11 9.11 0.00 5.18
1927 1961 2.520120 AGACTCTGGATGGGTGATAGGA 59.480 50.000 0.00 0.00 0.00 2.94
1930 1964 5.087323 GACTCTGGATGGGTGATAGGATAA 58.913 45.833 0.00 0.00 0.00 1.75
1942 1976 9.573166 TGGGTGATAGGATAAAAGATTACATTG 57.427 33.333 0.00 0.00 0.00 2.82
1999 2042 1.308783 GGGCAGCTCCTTTTTCTCGG 61.309 60.000 0.00 0.00 34.39 4.63
2000 2043 1.308783 GGCAGCTCCTTTTTCTCGGG 61.309 60.000 0.00 0.00 0.00 5.14
2013 2056 1.076777 CTCGGGCCATGGTTGGAAT 60.077 57.895 14.67 0.00 46.92 3.01
2019 2062 1.117150 GCCATGGTTGGAATGCAGAT 58.883 50.000 14.67 0.00 46.92 2.90
2101 2147 6.016024 CCTCAAAGAACTGGAAATCAATGTCA 60.016 38.462 0.00 0.00 0.00 3.58
2148 2197 0.971386 AATTGCCTGCCCTCACTTTG 59.029 50.000 0.00 0.00 0.00 2.77
2167 2216 7.658982 TCACTTTGCTCAGAATATACATCATCC 59.341 37.037 0.00 0.00 0.00 3.51
2296 2345 2.752358 CCAAGCTCCAGTGGCTCA 59.248 61.111 3.51 0.00 39.30 4.26
2322 2371 1.070758 CAGTTCAGCAGTGTAGGGTGT 59.929 52.381 0.00 0.00 35.38 4.16
2333 2382 0.669625 GTAGGGTGTCACCAGAACGC 60.670 60.000 23.48 5.01 41.02 4.84
2404 2453 4.773742 GCAATAAGTAACAGCGACTACC 57.226 45.455 0.00 0.00 0.00 3.18
2449 2513 1.743252 GCCGAGTCTGCCTTGAAGG 60.743 63.158 6.92 6.92 38.80 3.46
2472 2536 3.018856 TGCTATCAAGTTGCATCCCAAG 58.981 45.455 0.00 0.00 33.63 3.61
2551 2615 1.405933 CGTCTGATGATTCTGGTGGCA 60.406 52.381 0.00 0.00 0.00 4.92
2614 2736 4.672587 TGACTCCTATTCCATGTGCTAC 57.327 45.455 0.00 0.00 0.00 3.58
2615 2737 3.388024 TGACTCCTATTCCATGTGCTACC 59.612 47.826 0.00 0.00 0.00 3.18
2616 2738 3.384168 ACTCCTATTCCATGTGCTACCA 58.616 45.455 0.00 0.00 0.00 3.25
2617 2739 3.780294 ACTCCTATTCCATGTGCTACCAA 59.220 43.478 0.00 0.00 0.00 3.67
2630 2759 1.002773 GCTACCAATACCATACCCCCG 59.997 57.143 0.00 0.00 0.00 5.73
2653 2782 3.595691 CTCAAGTCTGAGCCGTTGT 57.404 52.632 0.00 0.00 42.66 3.32
2654 2783 1.871080 CTCAAGTCTGAGCCGTTGTT 58.129 50.000 0.00 0.00 42.66 2.83
2655 2784 1.528586 CTCAAGTCTGAGCCGTTGTTG 59.471 52.381 0.00 0.00 42.66 3.33
2811 2978 7.865385 TCTTTGTGTAATAAACAAACTGGATGC 59.135 33.333 4.72 0.00 41.37 3.91
2834 3001 7.370383 TGCCATCTTATCTGTTTGAAGTTTTC 58.630 34.615 0.00 0.00 0.00 2.29
2841 3008 5.323371 TCTGTTTGAAGTTTTCACCTTGG 57.677 39.130 0.00 0.00 39.87 3.61
2851 3018 5.258051 AGTTTTCACCTTGGTCAAAGTACA 58.742 37.500 0.00 0.00 33.66 2.90
2853 3020 6.379988 AGTTTTCACCTTGGTCAAAGTACAAT 59.620 34.615 0.00 0.00 33.66 2.71
2854 3021 6.385649 TTTCACCTTGGTCAAAGTACAATC 57.614 37.500 0.00 0.00 33.66 2.67
2855 3022 5.304686 TCACCTTGGTCAAAGTACAATCT 57.695 39.130 0.00 0.00 33.66 2.40
2856 3023 6.428083 TCACCTTGGTCAAAGTACAATCTA 57.572 37.500 0.00 0.00 33.66 1.98
2858 3025 5.995282 CACCTTGGTCAAAGTACAATCTACA 59.005 40.000 0.00 0.00 33.66 2.74
2859 3026 6.147821 CACCTTGGTCAAAGTACAATCTACAG 59.852 42.308 0.00 0.00 33.66 2.74
2861 3028 5.818678 TGGTCAAAGTACAATCTACAGGT 57.181 39.130 0.00 0.00 0.00 4.00
2862 3029 5.547465 TGGTCAAAGTACAATCTACAGGTG 58.453 41.667 0.00 0.00 0.00 4.00
2863 3030 4.392138 GGTCAAAGTACAATCTACAGGTGC 59.608 45.833 0.00 0.00 0.00 5.01
2887 3061 1.690283 CGCTCATCAGTTCCGCTGTG 61.690 60.000 0.00 0.00 45.23 3.66
2889 3063 0.036952 CTCATCAGTTCCGCTGTGGT 60.037 55.000 7.20 0.00 45.23 4.16
2897 3071 0.465460 TTCCGCTGTGGTTTTGCTCT 60.465 50.000 7.20 0.00 39.52 4.09
2903 3077 2.555757 GCTGTGGTTTTGCTCTGAGAAT 59.444 45.455 9.28 0.00 0.00 2.40
2905 3079 4.216257 GCTGTGGTTTTGCTCTGAGAATAA 59.784 41.667 9.28 0.00 0.00 1.40
2924 3098 0.809385 ATGCACTCACATCAGCTTGC 59.191 50.000 0.00 0.00 0.00 4.01
2929 3103 3.247173 GCACTCACATCAGCTTGCTATAC 59.753 47.826 0.00 0.00 0.00 1.47
2931 3105 4.269603 CACTCACATCAGCTTGCTATACAC 59.730 45.833 0.00 0.00 0.00 2.90
2932 3106 3.447742 TCACATCAGCTTGCTATACACG 58.552 45.455 0.00 0.00 0.00 4.49
2933 3107 3.119137 TCACATCAGCTTGCTATACACGT 60.119 43.478 0.00 0.00 0.00 4.49
2948 3122 0.040336 CACGTACGTGTCTCAGCTGT 60.040 55.000 34.48 0.25 40.91 4.40
2949 3123 0.666913 ACGTACGTGTCTCAGCTGTT 59.333 50.000 22.14 0.00 0.00 3.16
2950 3124 1.053048 CGTACGTGTCTCAGCTGTTG 58.947 55.000 14.67 8.33 0.00 3.33
2951 3125 0.784778 GTACGTGTCTCAGCTGTTGC 59.215 55.000 14.67 5.46 40.05 4.17
2977 3174 9.612620 CTTCACATTTCTTTTGTAACTCCATAC 57.387 33.333 0.00 0.00 0.00 2.39
2978 3175 8.106247 TCACATTTCTTTTGTAACTCCATACC 57.894 34.615 0.00 0.00 0.00 2.73
2986 3186 4.579647 TGTAACTCCATACCTTTTCCCC 57.420 45.455 0.00 0.00 0.00 4.81
3001 3201 1.723288 TCCCCCACCAAAACCAAATC 58.277 50.000 0.00 0.00 0.00 2.17
3004 3204 0.320334 CCCACCAAAACCAAATCGCC 60.320 55.000 0.00 0.00 0.00 5.54
3005 3205 0.678950 CCACCAAAACCAAATCGCCT 59.321 50.000 0.00 0.00 0.00 5.52
3013 3213 2.703798 CCAAATCGCCTGCCCACTG 61.704 63.158 0.00 0.00 0.00 3.66
3036 3237 0.529833 ATCGGCCGAGATCATAGCTG 59.470 55.000 33.87 0.00 0.00 4.24
3041 3242 0.683973 CCGAGATCATAGCTGGCCTT 59.316 55.000 3.32 0.00 0.00 4.35
3055 3256 1.148867 TGGCCTTCCCCATGAAAGAAA 59.851 47.619 3.32 0.00 31.06 2.52
3059 3260 3.306294 GCCTTCCCCATGAAAGAAACAAG 60.306 47.826 0.00 0.00 31.06 3.16
3061 3262 4.588528 CCTTCCCCATGAAAGAAACAAGAA 59.411 41.667 0.00 0.00 31.06 2.52
3069 3270 7.337942 CCCATGAAAGAAACAAGAACTAGCTAT 59.662 37.037 0.00 0.00 0.00 2.97
3070 3271 9.383519 CCATGAAAGAAACAAGAACTAGCTATA 57.616 33.333 0.00 0.00 0.00 1.31
3148 3349 6.103797 ACAGGAATCCTAATCCCAGAAATCAT 59.896 38.462 0.00 0.00 37.71 2.45
3154 3355 7.308450 TCCTAATCCCAGAAATCATACTGAG 57.692 40.000 0.00 0.00 36.38 3.35
3215 3416 6.301607 CGCGAAATTAACATGCATATCAAGAG 59.698 38.462 0.00 0.00 0.00 2.85
3227 3428 5.359716 CATATCAAGAGAGATGCAAAGGC 57.640 43.478 0.00 0.00 36.75 4.35
3241 3445 4.474226 GCAAAGGCATAGTTTAGATCGG 57.526 45.455 0.00 0.00 40.72 4.18
3244 3448 1.348036 AGGCATAGTTTAGATCGGGCC 59.652 52.381 0.00 0.00 40.41 5.80
3263 3467 4.464008 GGCCAGGATCATATTCAAAGTCA 58.536 43.478 0.00 0.00 0.00 3.41
3281 3485 8.253810 TCAAAGTCATAAACATGGTTTCACAAA 58.746 29.630 0.00 0.00 0.00 2.83
3282 3486 9.044150 CAAAGTCATAAACATGGTTTCACAAAT 57.956 29.630 0.00 0.00 0.00 2.32
3285 3489 9.691362 AGTCATAAACATGGTTTCACAAATAAC 57.309 29.630 0.00 0.00 0.00 1.89
3286 3490 9.469807 GTCATAAACATGGTTTCACAAATAACA 57.530 29.630 0.00 0.00 0.00 2.41
3289 3493 6.783892 AACATGGTTTCACAAATAACATGC 57.216 33.333 0.00 0.00 35.32 4.06
3290 3494 5.851720 ACATGGTTTCACAAATAACATGCA 58.148 33.333 0.00 0.00 35.32 3.96
3291 3495 6.465948 ACATGGTTTCACAAATAACATGCAT 58.534 32.000 0.00 0.00 35.32 3.96
3292 3496 6.369340 ACATGGTTTCACAAATAACATGCATG 59.631 34.615 25.09 25.09 35.32 4.06
3293 3497 4.689812 TGGTTTCACAAATAACATGCATGC 59.310 37.500 26.53 11.82 0.00 4.06
3294 3498 4.689812 GGTTTCACAAATAACATGCATGCA 59.310 37.500 26.53 25.04 0.00 3.96
3295 3499 5.352016 GGTTTCACAAATAACATGCATGCAT 59.648 36.000 27.46 27.46 37.08 3.96
3305 3509 0.671796 ATGCATGCATGATTGGTCCG 59.328 50.000 31.74 0.20 35.03 4.79
3306 3510 0.394080 TGCATGCATGATTGGTCCGA 60.394 50.000 30.64 0.00 0.00 4.55
3307 3511 0.740149 GCATGCATGATTGGTCCGAA 59.260 50.000 30.64 0.00 0.00 4.30
3308 3512 1.338973 GCATGCATGATTGGTCCGAAT 59.661 47.619 30.64 0.00 0.00 3.34
3309 3513 2.553602 GCATGCATGATTGGTCCGAATA 59.446 45.455 30.64 0.00 0.00 1.75
3310 3514 3.365666 GCATGCATGATTGGTCCGAATAG 60.366 47.826 30.64 0.00 0.00 1.73
3311 3515 3.558931 TGCATGATTGGTCCGAATAGT 57.441 42.857 0.00 0.00 0.00 2.12
3312 3516 3.466836 TGCATGATTGGTCCGAATAGTC 58.533 45.455 0.00 0.00 0.00 2.59
3313 3517 2.808543 GCATGATTGGTCCGAATAGTCC 59.191 50.000 0.00 0.00 0.00 3.85
3314 3518 3.744214 GCATGATTGGTCCGAATAGTCCA 60.744 47.826 0.00 0.00 0.00 4.02
3315 3519 4.450976 CATGATTGGTCCGAATAGTCCAA 58.549 43.478 0.00 0.00 42.81 3.53
3320 3524 5.943349 TTGGTCCGAATAGTCCAATCTAA 57.057 39.130 0.00 0.00 35.42 2.10
3321 3525 5.943349 TGGTCCGAATAGTCCAATCTAAA 57.057 39.130 0.00 0.00 0.00 1.85
3322 3526 5.914033 TGGTCCGAATAGTCCAATCTAAAG 58.086 41.667 0.00 0.00 0.00 1.85
3323 3527 5.424252 TGGTCCGAATAGTCCAATCTAAAGT 59.576 40.000 0.00 0.00 0.00 2.66
3324 3528 5.984323 GGTCCGAATAGTCCAATCTAAAGTC 59.016 44.000 0.00 0.00 0.00 3.01
3325 3529 6.406624 GGTCCGAATAGTCCAATCTAAAGTCA 60.407 42.308 0.00 0.00 0.00 3.41
3326 3530 7.039882 GTCCGAATAGTCCAATCTAAAGTCAA 58.960 38.462 0.00 0.00 0.00 3.18
3327 3531 7.548075 GTCCGAATAGTCCAATCTAAAGTCAAA 59.452 37.037 0.00 0.00 0.00 2.69
3328 3532 8.098286 TCCGAATAGTCCAATCTAAAGTCAAAA 58.902 33.333 0.00 0.00 0.00 2.44
3329 3533 8.893727 CCGAATAGTCCAATCTAAAGTCAAAAT 58.106 33.333 0.00 0.00 0.00 1.82
3336 3540 9.508567 GTCCAATCTAAAGTCAAAATAAGATGC 57.491 33.333 0.00 0.00 0.00 3.91
3337 3541 9.466497 TCCAATCTAAAGTCAAAATAAGATGCT 57.534 29.630 0.00 0.00 0.00 3.79
3343 3547 9.774742 CTAAAGTCAAAATAAGATGCTAACACC 57.225 33.333 0.00 0.00 0.00 4.16
3344 3548 6.759497 AGTCAAAATAAGATGCTAACACCC 57.241 37.500 0.00 0.00 0.00 4.61
3345 3549 6.485171 AGTCAAAATAAGATGCTAACACCCT 58.515 36.000 0.00 0.00 0.00 4.34
3346 3550 6.599638 AGTCAAAATAAGATGCTAACACCCTC 59.400 38.462 0.00 0.00 0.00 4.30
3347 3551 6.374333 GTCAAAATAAGATGCTAACACCCTCA 59.626 38.462 0.00 0.00 0.00 3.86
3348 3552 6.374333 TCAAAATAAGATGCTAACACCCTCAC 59.626 38.462 0.00 0.00 0.00 3.51
3349 3553 5.435686 AATAAGATGCTAACACCCTCACA 57.564 39.130 0.00 0.00 0.00 3.58
3350 3554 2.770164 AGATGCTAACACCCTCACAC 57.230 50.000 0.00 0.00 0.00 3.82
3351 3555 1.279271 AGATGCTAACACCCTCACACC 59.721 52.381 0.00 0.00 0.00 4.16
3352 3556 1.003118 GATGCTAACACCCTCACACCA 59.997 52.381 0.00 0.00 0.00 4.17
3353 3557 0.840617 TGCTAACACCCTCACACCAA 59.159 50.000 0.00 0.00 0.00 3.67
3354 3558 1.213182 TGCTAACACCCTCACACCAAA 59.787 47.619 0.00 0.00 0.00 3.28
3355 3559 1.880027 GCTAACACCCTCACACCAAAG 59.120 52.381 0.00 0.00 0.00 2.77
3356 3560 2.748465 GCTAACACCCTCACACCAAAGT 60.748 50.000 0.00 0.00 0.00 2.66
3357 3561 3.495453 GCTAACACCCTCACACCAAAGTA 60.495 47.826 0.00 0.00 0.00 2.24
3358 3562 2.930826 ACACCCTCACACCAAAGTAG 57.069 50.000 0.00 0.00 0.00 2.57
3359 3563 2.404559 ACACCCTCACACCAAAGTAGA 58.595 47.619 0.00 0.00 0.00 2.59
3360 3564 2.775384 ACACCCTCACACCAAAGTAGAA 59.225 45.455 0.00 0.00 0.00 2.10
3361 3565 3.394606 ACACCCTCACACCAAAGTAGAAT 59.605 43.478 0.00 0.00 0.00 2.40
3362 3566 4.141251 ACACCCTCACACCAAAGTAGAATT 60.141 41.667 0.00 0.00 0.00 2.17
3363 3567 4.827284 CACCCTCACACCAAAGTAGAATTT 59.173 41.667 0.00 0.00 0.00 1.82
3364 3568 5.048713 CACCCTCACACCAAAGTAGAATTTC 60.049 44.000 0.00 0.00 0.00 2.17
3365 3569 5.070001 CCCTCACACCAAAGTAGAATTTCA 58.930 41.667 0.00 0.00 0.00 2.69
3366 3570 5.534654 CCCTCACACCAAAGTAGAATTTCAA 59.465 40.000 0.00 0.00 0.00 2.69
3367 3571 6.294176 CCCTCACACCAAAGTAGAATTTCAAG 60.294 42.308 0.00 0.00 0.00 3.02
3368 3572 6.072112 TCACACCAAAGTAGAATTTCAAGC 57.928 37.500 0.00 0.00 0.00 4.01
3369 3573 5.827797 TCACACCAAAGTAGAATTTCAAGCT 59.172 36.000 0.00 0.00 0.00 3.74
3370 3574 6.995686 TCACACCAAAGTAGAATTTCAAGCTA 59.004 34.615 0.00 0.00 0.00 3.32
3371 3575 7.500892 TCACACCAAAGTAGAATTTCAAGCTAA 59.499 33.333 0.00 0.00 0.00 3.09
3372 3576 7.591426 CACACCAAAGTAGAATTTCAAGCTAAC 59.409 37.037 0.00 0.00 0.00 2.34
3373 3577 7.284489 ACACCAAAGTAGAATTTCAAGCTAACA 59.716 33.333 0.00 0.00 0.00 2.41
3374 3578 7.591426 CACCAAAGTAGAATTTCAAGCTAACAC 59.409 37.037 0.00 0.00 0.00 3.32
3375 3579 7.084486 CCAAAGTAGAATTTCAAGCTAACACC 58.916 38.462 0.00 0.00 0.00 4.16
3376 3580 7.040409 CCAAAGTAGAATTTCAAGCTAACACCT 60.040 37.037 0.00 0.00 0.00 4.00
3377 3581 8.352942 CAAAGTAGAATTTCAAGCTAACACCTT 58.647 33.333 0.00 0.00 0.00 3.50
3378 3582 7.674471 AGTAGAATTTCAAGCTAACACCTTC 57.326 36.000 0.00 0.00 0.00 3.46
3379 3583 7.224297 AGTAGAATTTCAAGCTAACACCTTCA 58.776 34.615 0.00 0.00 0.00 3.02
3380 3584 6.959639 AGAATTTCAAGCTAACACCTTCAA 57.040 33.333 0.00 0.00 0.00 2.69
3381 3585 6.739112 AGAATTTCAAGCTAACACCTTCAAC 58.261 36.000 0.00 0.00 0.00 3.18
3382 3586 6.321181 AGAATTTCAAGCTAACACCTTCAACA 59.679 34.615 0.00 0.00 0.00 3.33
3383 3587 5.906113 TTTCAAGCTAACACCTTCAACAA 57.094 34.783 0.00 0.00 0.00 2.83
3384 3588 5.906113 TTCAAGCTAACACCTTCAACAAA 57.094 34.783 0.00 0.00 0.00 2.83
3385 3589 5.499139 TCAAGCTAACACCTTCAACAAAG 57.501 39.130 0.00 0.00 34.52 2.77
3386 3590 5.189928 TCAAGCTAACACCTTCAACAAAGA 58.810 37.500 0.00 0.00 37.12 2.52
3387 3591 5.650266 TCAAGCTAACACCTTCAACAAAGAA 59.350 36.000 0.00 0.00 37.12 2.52
3388 3592 6.151985 TCAAGCTAACACCTTCAACAAAGAAA 59.848 34.615 0.00 0.00 37.12 2.52
3389 3593 6.524101 AGCTAACACCTTCAACAAAGAAAA 57.476 33.333 0.00 0.00 37.12 2.29
3390 3594 6.930731 AGCTAACACCTTCAACAAAGAAAAA 58.069 32.000 0.00 0.00 37.12 1.94
3408 3612 2.642154 AAAACGACCCACATACACCA 57.358 45.000 0.00 0.00 0.00 4.17
3409 3613 2.642154 AAACGACCCACATACACCAA 57.358 45.000 0.00 0.00 0.00 3.67
3410 3614 1.886886 AACGACCCACATACACCAAC 58.113 50.000 0.00 0.00 0.00 3.77
3411 3615 0.759959 ACGACCCACATACACCAACA 59.240 50.000 0.00 0.00 0.00 3.33
3412 3616 1.153353 CGACCCACATACACCAACAC 58.847 55.000 0.00 0.00 0.00 3.32
3413 3617 1.270625 CGACCCACATACACCAACACT 60.271 52.381 0.00 0.00 0.00 3.55
3414 3618 2.151202 GACCCACATACACCAACACTG 58.849 52.381 0.00 0.00 0.00 3.66
3415 3619 0.881118 CCCACATACACCAACACTGC 59.119 55.000 0.00 0.00 0.00 4.40
3416 3620 1.545428 CCCACATACACCAACACTGCT 60.545 52.381 0.00 0.00 0.00 4.24
3417 3621 2.290008 CCCACATACACCAACACTGCTA 60.290 50.000 0.00 0.00 0.00 3.49
3418 3622 3.002791 CCACATACACCAACACTGCTAG 58.997 50.000 0.00 0.00 0.00 3.42
3419 3623 3.306710 CCACATACACCAACACTGCTAGA 60.307 47.826 0.00 0.00 0.00 2.43
3420 3624 4.507710 CACATACACCAACACTGCTAGAT 58.492 43.478 0.00 0.00 0.00 1.98
3421 3625 4.568359 CACATACACCAACACTGCTAGATC 59.432 45.833 0.00 0.00 0.00 2.75
3422 3626 4.467795 ACATACACCAACACTGCTAGATCT 59.532 41.667 0.00 0.00 0.00 2.75
3423 3627 3.601443 ACACCAACACTGCTAGATCTC 57.399 47.619 0.00 0.00 0.00 2.75
3424 3628 2.094494 ACACCAACACTGCTAGATCTCG 60.094 50.000 0.00 0.00 0.00 4.04
3425 3629 1.134965 ACCAACACTGCTAGATCTCGC 60.135 52.381 12.15 12.15 0.00 5.03
3426 3630 1.134995 CCAACACTGCTAGATCTCGCA 60.135 52.381 19.69 19.69 34.54 5.10
3427 3631 2.482664 CCAACACTGCTAGATCTCGCAT 60.483 50.000 20.94 9.69 35.32 4.73
3428 3632 2.505628 ACACTGCTAGATCTCGCATG 57.494 50.000 20.94 20.45 35.32 4.06
3429 3633 2.027385 ACACTGCTAGATCTCGCATGA 58.973 47.619 20.94 0.27 35.32 3.07
3430 3634 2.428530 ACACTGCTAGATCTCGCATGAA 59.571 45.455 20.94 0.00 35.32 2.57
3431 3635 3.051327 CACTGCTAGATCTCGCATGAAG 58.949 50.000 20.94 12.40 35.32 3.02
3432 3636 2.035704 ACTGCTAGATCTCGCATGAAGG 59.964 50.000 20.94 12.07 35.32 3.46
3433 3637 1.269988 TGCTAGATCTCGCATGAAGGC 60.270 52.381 17.32 2.19 0.00 4.35
3434 3638 1.938926 GCTAGATCTCGCATGAAGGCC 60.939 57.143 14.01 0.00 0.00 5.19
3435 3639 1.342496 CTAGATCTCGCATGAAGGCCA 59.658 52.381 5.01 0.00 0.00 5.36
3436 3640 0.543277 AGATCTCGCATGAAGGCCAA 59.457 50.000 5.01 0.00 0.00 4.52
3437 3641 1.065199 AGATCTCGCATGAAGGCCAAA 60.065 47.619 5.01 0.00 0.00 3.28
3438 3642 1.952296 GATCTCGCATGAAGGCCAAAT 59.048 47.619 5.01 0.00 0.00 2.32
3439 3643 1.382522 TCTCGCATGAAGGCCAAATC 58.617 50.000 5.01 0.00 0.00 2.17
3440 3644 0.028505 CTCGCATGAAGGCCAAATCG 59.971 55.000 5.01 0.11 0.00 3.34
3441 3645 0.676466 TCGCATGAAGGCCAAATCGT 60.676 50.000 5.01 0.00 0.00 3.73
3442 3646 0.523968 CGCATGAAGGCCAAATCGTG 60.524 55.000 16.78 16.78 36.00 4.35
3443 3647 0.810648 GCATGAAGGCCAAATCGTGA 59.189 50.000 22.43 0.00 35.10 4.35
3444 3648 1.468054 GCATGAAGGCCAAATCGTGAC 60.468 52.381 22.43 13.27 35.10 3.67
3445 3649 2.086869 CATGAAGGCCAAATCGTGACT 58.913 47.619 16.32 0.00 35.10 3.41
3446 3650 2.270352 TGAAGGCCAAATCGTGACTT 57.730 45.000 5.01 0.00 0.00 3.01
3447 3651 2.582052 TGAAGGCCAAATCGTGACTTT 58.418 42.857 5.01 0.00 0.00 2.66
3448 3652 2.955660 TGAAGGCCAAATCGTGACTTTT 59.044 40.909 5.01 0.00 0.00 2.27
3449 3653 3.004315 TGAAGGCCAAATCGTGACTTTTC 59.996 43.478 5.01 0.00 0.00 2.29
3450 3654 2.582052 AGGCCAAATCGTGACTTTTCA 58.418 42.857 5.01 0.00 0.00 2.69
3451 3655 3.157087 AGGCCAAATCGTGACTTTTCAT 58.843 40.909 5.01 0.00 33.11 2.57
3452 3656 3.191371 AGGCCAAATCGTGACTTTTCATC 59.809 43.478 5.01 0.00 33.11 2.92
3453 3657 3.191371 GGCCAAATCGTGACTTTTCATCT 59.809 43.478 0.00 0.00 33.11 2.90
3454 3658 4.161333 GCCAAATCGTGACTTTTCATCTG 58.839 43.478 0.00 0.00 33.11 2.90
3455 3659 4.320494 GCCAAATCGTGACTTTTCATCTGT 60.320 41.667 0.00 0.00 33.11 3.41
3456 3660 5.385617 CCAAATCGTGACTTTTCATCTGTC 58.614 41.667 0.00 0.00 33.11 3.51
3457 3661 5.049474 CCAAATCGTGACTTTTCATCTGTCA 60.049 40.000 0.00 0.00 38.24 3.58
3458 3662 6.429624 CAAATCGTGACTTTTCATCTGTCAA 58.570 36.000 0.00 0.00 41.52 3.18
3459 3663 6.808008 AATCGTGACTTTTCATCTGTCAAT 57.192 33.333 0.00 0.00 41.52 2.57
3460 3664 5.845985 TCGTGACTTTTCATCTGTCAATC 57.154 39.130 0.00 0.00 41.52 2.67
3461 3665 5.296748 TCGTGACTTTTCATCTGTCAATCA 58.703 37.500 0.00 0.00 41.52 2.57
3462 3666 5.934043 TCGTGACTTTTCATCTGTCAATCAT 59.066 36.000 0.00 0.00 41.52 2.45
3463 3667 6.091305 TCGTGACTTTTCATCTGTCAATCATC 59.909 38.462 0.00 0.00 41.52 2.92
3464 3668 6.549952 GTGACTTTTCATCTGTCAATCATCC 58.450 40.000 0.00 0.00 41.52 3.51
3465 3669 6.149973 GTGACTTTTCATCTGTCAATCATCCA 59.850 38.462 0.00 0.00 41.52 3.41
3466 3670 6.888088 TGACTTTTCATCTGTCAATCATCCAT 59.112 34.615 0.00 0.00 37.71 3.41
3467 3671 7.096884 ACTTTTCATCTGTCAATCATCCATG 57.903 36.000 0.00 0.00 0.00 3.66
3468 3672 6.662234 ACTTTTCATCTGTCAATCATCCATGT 59.338 34.615 0.00 0.00 0.00 3.21
3469 3673 6.688637 TTTCATCTGTCAATCATCCATGTC 57.311 37.500 0.00 0.00 0.00 3.06
3470 3674 4.374399 TCATCTGTCAATCATCCATGTCG 58.626 43.478 0.00 0.00 0.00 4.35
3471 3675 3.893326 TCTGTCAATCATCCATGTCGT 57.107 42.857 0.00 0.00 0.00 4.34
3472 3676 3.785486 TCTGTCAATCATCCATGTCGTC 58.215 45.455 0.00 0.00 0.00 4.20
3473 3677 3.195396 TCTGTCAATCATCCATGTCGTCA 59.805 43.478 0.00 0.00 0.00 4.35
3474 3678 3.261580 TGTCAATCATCCATGTCGTCAC 58.738 45.455 0.00 0.00 0.00 3.67
3475 3679 2.609459 GTCAATCATCCATGTCGTCACC 59.391 50.000 0.00 0.00 0.00 4.02
3476 3680 1.594397 CAATCATCCATGTCGTCACCG 59.406 52.381 0.00 0.00 0.00 4.94
3477 3681 1.111277 ATCATCCATGTCGTCACCGA 58.889 50.000 0.00 0.00 41.73 4.69
3485 3689 4.090723 TCGTCACCGACCACTCAT 57.909 55.556 0.00 0.00 38.40 2.90
3486 3690 1.880894 TCGTCACCGACCACTCATC 59.119 57.895 0.00 0.00 38.40 2.92
3487 3691 1.153823 CGTCACCGACCACTCATCC 60.154 63.158 0.00 0.00 35.63 3.51
3488 3692 1.218316 GTCACCGACCACTCATCCC 59.782 63.158 0.00 0.00 0.00 3.85
3489 3693 1.078528 TCACCGACCACTCATCCCT 59.921 57.895 0.00 0.00 0.00 4.20
3490 3694 0.970937 TCACCGACCACTCATCCCTC 60.971 60.000 0.00 0.00 0.00 4.30
3491 3695 0.972983 CACCGACCACTCATCCCTCT 60.973 60.000 0.00 0.00 0.00 3.69
3492 3696 0.684805 ACCGACCACTCATCCCTCTC 60.685 60.000 0.00 0.00 0.00 3.20
3493 3697 0.684479 CCGACCACTCATCCCTCTCA 60.684 60.000 0.00 0.00 0.00 3.27
3494 3698 0.457851 CGACCACTCATCCCTCTCAC 59.542 60.000 0.00 0.00 0.00 3.51
3495 3699 0.457851 GACCACTCATCCCTCTCACG 59.542 60.000 0.00 0.00 0.00 4.35
3496 3700 1.142748 CCACTCATCCCTCTCACGC 59.857 63.158 0.00 0.00 0.00 5.34
3497 3701 1.607801 CCACTCATCCCTCTCACGCA 61.608 60.000 0.00 0.00 0.00 5.24
3498 3702 0.179116 CACTCATCCCTCTCACGCAG 60.179 60.000 0.00 0.00 0.00 5.18
3499 3703 1.227205 CTCATCCCTCTCACGCAGC 60.227 63.158 0.00 0.00 0.00 5.25
3500 3704 2.202987 CATCCCTCTCACGCAGCC 60.203 66.667 0.00 0.00 0.00 4.85
3501 3705 3.842923 ATCCCTCTCACGCAGCCG 61.843 66.667 0.00 0.00 41.14 5.52
3514 3718 4.052518 AGCCGGCCAAAGGAGCAT 62.053 61.111 26.15 0.00 0.00 3.79
3515 3719 3.070576 GCCGGCCAAAGGAGCATT 61.071 61.111 18.11 0.00 0.00 3.56
3516 3720 1.752694 GCCGGCCAAAGGAGCATTA 60.753 57.895 18.11 0.00 0.00 1.90
3517 3721 1.728490 GCCGGCCAAAGGAGCATTAG 61.728 60.000 18.11 0.00 0.00 1.73
3518 3722 0.394352 CCGGCCAAAGGAGCATTAGT 60.394 55.000 2.24 0.00 0.00 2.24
3519 3723 1.463674 CGGCCAAAGGAGCATTAGTT 58.536 50.000 2.24 0.00 0.00 2.24
3520 3724 1.133025 CGGCCAAAGGAGCATTAGTTG 59.867 52.381 2.24 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.001361 GCATGCCTCAGCCACATCAC 62.001 60.000 6.36 0.00 38.69 3.06
35 36 0.467384 AATCACGAGGATGGGAGCAG 59.533 55.000 0.00 0.00 36.02 4.24
83 84 4.865776 AGAACAGTCTTCTTGAGTCTTCG 58.134 43.478 0.00 0.00 31.18 3.79
118 119 6.183360 GCGAGGGTAAGTTTCTTCAGATTTAC 60.183 42.308 0.00 0.00 0.00 2.01
122 123 3.369576 GGCGAGGGTAAGTTTCTTCAGAT 60.370 47.826 0.00 0.00 0.00 2.90
132 133 1.544759 CCAAAACTGGCGAGGGTAAGT 60.545 52.381 0.00 0.00 0.00 2.24
136 137 1.789576 ATCCCAAAACTGGCGAGGGT 61.790 55.000 0.00 0.00 40.48 4.34
209 210 3.188667 CACTTGCTAGCATGCCTGATATG 59.811 47.826 25.87 13.59 0.00 1.78
240 241 0.472471 TCTTCCCAACGCTCTTGGTT 59.528 50.000 8.72 0.00 37.88 3.67
250 251 9.936759 CTAGAGAATTCCTTATATCTTCCCAAC 57.063 37.037 0.65 0.00 0.00 3.77
258 259 7.396623 TCCCGAACCTAGAGAATTCCTTATATC 59.603 40.741 0.65 0.00 0.00 1.63
264 265 3.399952 TCCCGAACCTAGAGAATTCCT 57.600 47.619 0.65 1.84 0.00 3.36
295 296 4.682021 ATTTTCCTCATCCCTTCCAACT 57.318 40.909 0.00 0.00 0.00 3.16
317 318 7.430760 AAGGTTCTTGTAGCTGAGATCTAAT 57.569 36.000 0.00 0.00 0.00 1.73
343 344 4.999950 ACAAACATGTCTTGAGATGAGGAC 59.000 41.667 20.41 0.00 0.00 3.85
372 373 3.649843 AGTCCTCGGGATACATACCAAA 58.350 45.455 0.00 0.00 32.73 3.28
398 399 6.252599 AGTTCCAAATGATGCCTCTGTATA 57.747 37.500 0.00 0.00 0.00 1.47
433 434 4.069300 ACCCTACTAATAAAGCCTTCGC 57.931 45.455 0.00 0.00 0.00 4.70
444 445 8.914011 GGCAGAAATGATAAAAACCCTACTAAT 58.086 33.333 0.00 0.00 0.00 1.73
445 446 7.891183 TGGCAGAAATGATAAAAACCCTACTAA 59.109 33.333 0.00 0.00 0.00 2.24
446 447 7.338449 GTGGCAGAAATGATAAAAACCCTACTA 59.662 37.037 0.00 0.00 0.00 1.82
447 448 6.152831 GTGGCAGAAATGATAAAAACCCTACT 59.847 38.462 0.00 0.00 0.00 2.57
448 449 6.152831 AGTGGCAGAAATGATAAAAACCCTAC 59.847 38.462 0.00 0.00 0.00 3.18
449 450 6.252995 AGTGGCAGAAATGATAAAAACCCTA 58.747 36.000 0.00 0.00 0.00 3.53
625 626 3.469739 ACGGGTTTGACGTGAAAATAGT 58.530 40.909 0.56 0.00 43.78 2.12
912 913 2.162319 TGCTTCGTTAGACACATGCA 57.838 45.000 0.00 0.00 0.00 3.96
972 973 2.037144 ACCGGTTGTGTCTCACTACTT 58.963 47.619 0.00 0.00 39.34 2.24
1033 1034 1.168714 GCAACCTCCTCCACATGTTC 58.831 55.000 0.00 0.00 0.00 3.18
1036 1037 1.171308 CTTGCAACCTCCTCCACATG 58.829 55.000 0.00 0.00 0.00 3.21
1045 1046 6.073440 TCGTTGAAATAACTACTTGCAACCTC 60.073 38.462 0.00 0.00 32.74 3.85
1056 1057 6.480651 TGTTGACAAGCTCGTTGAAATAACTA 59.519 34.615 0.00 0.00 38.60 2.24
1125 1126 7.252708 TCATATCATGAACTTTGCAATGTGTC 58.747 34.615 17.71 15.95 36.11 3.67
1242 1243 0.954449 GGTGGAGAGACAGTCGACGA 60.954 60.000 10.46 0.00 0.00 4.20
1269 1270 4.645667 TGTTCGATCAGTTTCACAATCG 57.354 40.909 0.00 0.00 41.69 3.34
1273 1274 5.811399 AACTTTGTTCGATCAGTTTCACA 57.189 34.783 0.00 0.00 0.00 3.58
1274 1275 6.797033 CCATAACTTTGTTCGATCAGTTTCAC 59.203 38.462 6.47 0.00 0.00 3.18
1275 1276 6.072728 CCCATAACTTTGTTCGATCAGTTTCA 60.073 38.462 6.47 0.00 0.00 2.69
1280 1281 4.261801 ACCCCATAACTTTGTTCGATCAG 58.738 43.478 0.00 0.00 0.00 2.90
1285 1286 5.890424 ATGTTACCCCATAACTTTGTTCG 57.110 39.130 0.00 0.00 43.26 3.95
1337 1338 7.227156 AGGCATATCCTCACAATAAGTAAAGG 58.773 38.462 0.00 0.00 43.20 3.11
1414 1415 7.329717 CAGTCCAGTCAAGTCAACTCTATTAAC 59.670 40.741 0.00 0.00 0.00 2.01
1417 1418 5.788450 CAGTCCAGTCAAGTCAACTCTATT 58.212 41.667 0.00 0.00 0.00 1.73
1429 1430 2.875672 GCATGTTAGGCAGTCCAGTCAA 60.876 50.000 0.00 0.00 33.74 3.18
1431 1435 1.339055 TGCATGTTAGGCAGTCCAGTC 60.339 52.381 0.00 0.00 36.11 3.51
1441 1445 1.065926 TCTCAGCTGGTGCATGTTAGG 60.066 52.381 15.13 0.00 42.74 2.69
1474 1478 2.216046 CTCGACATCCCAACCATCATG 58.784 52.381 0.00 0.00 0.00 3.07
1482 1486 1.066430 GTTGGTAGCTCGACATCCCAA 60.066 52.381 0.00 0.00 0.00 4.12
1534 1559 8.499403 TGACGGACATTTTCATATACATCAAA 57.501 30.769 0.00 0.00 0.00 2.69
1543 1568 5.236263 CGAATGGATGACGGACATTTTCATA 59.764 40.000 0.00 0.00 39.56 2.15
1544 1569 4.035558 CGAATGGATGACGGACATTTTCAT 59.964 41.667 0.00 0.00 39.56 2.57
1548 1573 2.936498 GTCGAATGGATGACGGACATTT 59.064 45.455 0.00 0.00 39.56 2.32
1556 1581 6.219473 AGATGAACTATGTCGAATGGATGAC 58.781 40.000 0.00 0.00 35.67 3.06
1569 1597 5.219343 TCAGGCATGGTAGATGAACTATG 57.781 43.478 0.00 0.00 40.29 2.23
1606 1634 0.739813 GTTCGAGCGGCATACCAACT 60.740 55.000 1.45 0.00 34.57 3.16
1615 1643 1.429148 CCATAAGGTGTTCGAGCGGC 61.429 60.000 0.00 0.00 0.00 6.53
1638 1666 1.338674 CGCAGGGACTTCATGTTACCA 60.339 52.381 0.00 0.00 34.60 3.25
1666 1694 8.084073 TGAGTTGTCCATCAAATTGAAATCTTC 58.916 33.333 0.00 0.00 37.81 2.87
1671 1699 9.076781 TCTATTGAGTTGTCCATCAAATTGAAA 57.923 29.630 0.00 0.00 38.80 2.69
1693 1721 7.227873 TCTCCAAGACTCTCGATGTTATCTAT 58.772 38.462 0.00 0.00 0.00 1.98
1816 1850 2.223758 GGTACTCCAAGCTGATACCGAC 60.224 54.545 0.00 0.00 0.00 4.79
1819 1853 2.103263 CCAGGTACTCCAAGCTGATACC 59.897 54.545 4.72 0.00 45.70 2.73
1861 1895 1.747355 CAAGTCCATCAAGGCATCCAC 59.253 52.381 0.00 0.00 37.29 4.02
1927 1961 9.492730 AAGTTCCCCATCAATGTAATCTTTTAT 57.507 29.630 0.00 0.00 0.00 1.40
1930 1964 6.953520 TCAAGTTCCCCATCAATGTAATCTTT 59.046 34.615 0.00 0.00 0.00 2.52
1942 1976 1.143889 GGGAGGATCAAGTTCCCCATC 59.856 57.143 10.99 0.00 43.98 3.51
1962 1996 2.436646 AGTTCTGCCGGCCAATCG 60.437 61.111 26.77 7.23 0.00 3.34
2000 2043 4.989435 GCATCTGCATTCCAACCATGGC 62.989 54.545 13.04 0.00 43.02 4.40
2013 2056 1.816679 GCACTCATCCGCATCTGCA 60.817 57.895 2.72 0.00 42.21 4.41
2019 2062 1.742880 GAAGCAGCACTCATCCGCA 60.743 57.895 0.00 0.00 0.00 5.69
2148 2197 6.705302 TCCTTGGATGATGTATATTCTGAGC 58.295 40.000 0.00 0.00 0.00 4.26
2390 2439 0.109412 AGCACGGTAGTCGCTGTTAC 60.109 55.000 0.00 0.00 43.89 2.50
2392 2441 0.109412 GTAGCACGGTAGTCGCTGTT 60.109 55.000 1.36 0.00 43.89 3.16
2394 2443 1.582937 CGTAGCACGGTAGTCGCTG 60.583 63.158 1.36 0.00 43.89 5.18
2404 2453 3.546670 GTCTTTTCATACTCCGTAGCACG 59.453 47.826 2.27 2.27 42.11 5.34
2449 2513 1.678101 GGGATGCAACTTGATAGCACC 59.322 52.381 0.00 0.00 41.60 5.01
2472 2536 0.462581 TGATGTGAAGGCGAGGATGC 60.463 55.000 0.00 0.00 0.00 3.91
2519 2583 3.162666 TCATCAGACGGTAAAGACACCT 58.837 45.455 0.00 0.00 36.35 4.00
2529 2593 1.208052 CCACCAGAATCATCAGACGGT 59.792 52.381 0.00 0.00 0.00 4.83
2614 2736 1.133363 TGACGGGGGTATGGTATTGG 58.867 55.000 0.00 0.00 0.00 3.16
2615 2737 2.171870 AGTTGACGGGGGTATGGTATTG 59.828 50.000 0.00 0.00 0.00 1.90
2616 2738 2.436911 GAGTTGACGGGGGTATGGTATT 59.563 50.000 0.00 0.00 0.00 1.89
2617 2739 2.044758 GAGTTGACGGGGGTATGGTAT 58.955 52.381 0.00 0.00 0.00 2.73
2653 2782 4.825422 CATACTGCTGAGTTCTTCTCCAA 58.175 43.478 0.00 0.00 42.12 3.53
2654 2783 3.368843 GCATACTGCTGAGTTCTTCTCCA 60.369 47.826 0.00 0.00 40.96 3.86
2655 2784 3.194062 GCATACTGCTGAGTTCTTCTCC 58.806 50.000 0.00 0.00 40.96 3.71
2811 2978 7.809806 GGTGAAAACTTCAAACAGATAAGATGG 59.190 37.037 0.00 0.00 42.15 3.51
2834 3001 5.995282 TGTAGATTGTACTTTGACCAAGGTG 59.005 40.000 7.63 0.00 36.72 4.00
2841 3008 4.994852 TGCACCTGTAGATTGTACTTTGAC 59.005 41.667 0.00 0.00 0.00 3.18
2862 3029 1.267732 CGGAACTGATGAGCGAATTGC 60.268 52.381 0.00 0.00 46.98 3.56
2863 3030 1.267732 GCGGAACTGATGAGCGAATTG 60.268 52.381 0.00 0.00 0.00 2.32
2887 3061 5.098211 GTGCATTATTCTCAGAGCAAAACC 58.902 41.667 0.00 0.00 33.37 3.27
2889 3063 5.706833 TGAGTGCATTATTCTCAGAGCAAAA 59.293 36.000 0.10 0.00 34.00 2.44
2897 3071 4.573607 GCTGATGTGAGTGCATTATTCTCA 59.426 41.667 0.10 0.10 36.12 3.27
2903 3077 2.421073 GCAAGCTGATGTGAGTGCATTA 59.579 45.455 0.00 0.00 32.29 1.90
2905 3079 0.809385 GCAAGCTGATGTGAGTGCAT 59.191 50.000 0.00 0.00 32.29 3.96
2931 3105 1.053048 CAACAGCTGAGACACGTACG 58.947 55.000 23.35 15.01 0.00 3.67
2932 3106 0.784778 GCAACAGCTGAGACACGTAC 59.215 55.000 23.35 0.00 0.00 3.67
2933 3107 0.673985 AGCAACAGCTGAGACACGTA 59.326 50.000 23.35 0.00 37.19 3.57
2942 3116 3.637998 AGAAATGTGAAGCAACAGCTG 57.362 42.857 13.48 13.48 38.93 4.24
2948 3122 6.978080 GGAGTTACAAAAGAAATGTGAAGCAA 59.022 34.615 0.00 0.00 32.27 3.91
2949 3123 6.096141 TGGAGTTACAAAAGAAATGTGAAGCA 59.904 34.615 0.00 0.00 32.27 3.91
2950 3124 6.503524 TGGAGTTACAAAAGAAATGTGAAGC 58.496 36.000 0.00 0.00 32.27 3.86
2951 3125 9.612620 GTATGGAGTTACAAAAGAAATGTGAAG 57.387 33.333 0.00 0.00 32.27 3.02
2952 3126 8.573035 GGTATGGAGTTACAAAAGAAATGTGAA 58.427 33.333 0.00 0.00 32.27 3.18
2953 3127 7.942341 AGGTATGGAGTTACAAAAGAAATGTGA 59.058 33.333 0.00 0.00 32.27 3.58
2954 3128 8.110860 AGGTATGGAGTTACAAAAGAAATGTG 57.889 34.615 0.00 0.00 32.27 3.21
2955 3129 8.706322 AAGGTATGGAGTTACAAAAGAAATGT 57.294 30.769 0.00 0.00 34.81 2.71
2977 3174 0.762418 GGTTTTGGTGGGGGAAAAGG 59.238 55.000 0.00 0.00 0.00 3.11
2978 3175 1.501582 TGGTTTTGGTGGGGGAAAAG 58.498 50.000 0.00 0.00 0.00 2.27
2986 3186 0.678950 AGGCGATTTGGTTTTGGTGG 59.321 50.000 0.00 0.00 0.00 4.61
3036 3237 1.550524 GTTTCTTTCATGGGGAAGGCC 59.449 52.381 0.00 0.00 36.72 5.19
3041 3242 4.803452 AGTTCTTGTTTCTTTCATGGGGA 58.197 39.130 0.00 0.00 0.00 4.81
3069 3270 8.531982 GTGGTGACAGATAGATATAGGCAAATA 58.468 37.037 0.00 0.00 44.46 1.40
3070 3271 7.236432 AGTGGTGACAGATAGATATAGGCAAAT 59.764 37.037 0.00 0.00 44.46 2.32
3071 3272 6.554982 AGTGGTGACAGATAGATATAGGCAAA 59.445 38.462 0.00 0.00 44.46 3.68
3072 3273 6.077993 AGTGGTGACAGATAGATATAGGCAA 58.922 40.000 0.00 0.00 44.46 4.52
3073 3274 5.645201 AGTGGTGACAGATAGATATAGGCA 58.355 41.667 0.00 0.00 44.46 4.75
3074 3275 5.712446 TGAGTGGTGACAGATAGATATAGGC 59.288 44.000 0.00 0.00 44.46 3.93
3075 3276 6.151985 GGTGAGTGGTGACAGATAGATATAGG 59.848 46.154 0.00 0.00 44.46 2.57
3092 3293 1.016130 GTGATGCGTCTGGTGAGTGG 61.016 60.000 7.58 0.00 0.00 4.00
3114 3315 6.006449 GGATTAGGATTCCTGTTACATGCAT 58.994 40.000 15.80 0.00 34.61 3.96
3148 3349 7.327975 TCGCCTTTTCATTTTATCTCTCAGTA 58.672 34.615 0.00 0.00 0.00 2.74
3154 3355 5.340803 GGGTTCGCCTTTTCATTTTATCTC 58.659 41.667 0.00 0.00 37.45 2.75
3191 3392 7.355017 TCTCTTGATATGCATGTTAATTTCGC 58.645 34.615 10.16 0.00 0.00 4.70
3225 3426 1.071699 TGGCCCGATCTAAACTATGCC 59.928 52.381 0.00 0.00 38.13 4.40
3227 3428 2.632996 TCCTGGCCCGATCTAAACTATG 59.367 50.000 0.00 0.00 0.00 2.23
3236 3440 2.237143 TGAATATGATCCTGGCCCGATC 59.763 50.000 18.70 18.70 37.29 3.69
3239 3443 2.566833 TTGAATATGATCCTGGCCCG 57.433 50.000 0.00 0.00 0.00 6.13
3241 3445 4.464008 TGACTTTGAATATGATCCTGGCC 58.536 43.478 0.00 0.00 0.00 5.36
3263 3467 8.934825 GCATGTTATTTGTGAAACCATGTTTAT 58.065 29.630 0.00 0.00 34.36 1.40
3286 3490 0.671796 CGGACCAATCATGCATGCAT 59.328 50.000 27.46 27.46 37.08 3.96
3287 3491 0.394080 TCGGACCAATCATGCATGCA 60.394 50.000 25.04 25.04 0.00 3.96
3288 3492 0.740149 TTCGGACCAATCATGCATGC 59.260 50.000 22.25 11.82 0.00 4.06
3289 3493 3.817084 ACTATTCGGACCAATCATGCATG 59.183 43.478 21.07 21.07 0.00 4.06
3290 3494 4.067896 GACTATTCGGACCAATCATGCAT 58.932 43.478 0.00 0.00 0.00 3.96
3291 3495 3.466836 GACTATTCGGACCAATCATGCA 58.533 45.455 0.00 0.00 0.00 3.96
3292 3496 2.808543 GGACTATTCGGACCAATCATGC 59.191 50.000 0.00 0.00 0.00 4.06
3293 3497 4.071961 TGGACTATTCGGACCAATCATG 57.928 45.455 0.00 0.00 0.00 3.07
3294 3498 4.771114 TTGGACTATTCGGACCAATCAT 57.229 40.909 0.00 0.00 37.46 2.45
3295 3499 4.771114 ATTGGACTATTCGGACCAATCA 57.229 40.909 0.00 0.00 46.02 2.57
3298 3502 5.943349 TTAGATTGGACTATTCGGACCAA 57.057 39.130 0.00 0.00 44.63 3.67
3299 3503 5.424252 ACTTTAGATTGGACTATTCGGACCA 59.576 40.000 0.00 0.00 0.00 4.02
3300 3504 5.915175 ACTTTAGATTGGACTATTCGGACC 58.085 41.667 0.00 0.00 0.00 4.46
3301 3505 6.570692 TGACTTTAGATTGGACTATTCGGAC 58.429 40.000 0.00 0.00 0.00 4.79
3302 3506 6.785337 TGACTTTAGATTGGACTATTCGGA 57.215 37.500 0.00 0.00 0.00 4.55
3303 3507 7.843490 TTTGACTTTAGATTGGACTATTCGG 57.157 36.000 0.00 0.00 0.00 4.30
3310 3514 9.508567 GCATCTTATTTTGACTTTAGATTGGAC 57.491 33.333 0.00 0.00 0.00 4.02
3311 3515 9.466497 AGCATCTTATTTTGACTTTAGATTGGA 57.534 29.630 0.00 0.00 0.00 3.53
3317 3521 9.774742 GGTGTTAGCATCTTATTTTGACTTTAG 57.225 33.333 0.00 0.00 0.00 1.85
3318 3522 8.736244 GGGTGTTAGCATCTTATTTTGACTTTA 58.264 33.333 0.00 0.00 0.00 1.85
3319 3523 7.451566 AGGGTGTTAGCATCTTATTTTGACTTT 59.548 33.333 0.00 0.00 0.00 2.66
3320 3524 6.948309 AGGGTGTTAGCATCTTATTTTGACTT 59.052 34.615 0.00 0.00 0.00 3.01
3321 3525 6.485171 AGGGTGTTAGCATCTTATTTTGACT 58.515 36.000 0.00 0.00 0.00 3.41
3322 3526 6.374333 TGAGGGTGTTAGCATCTTATTTTGAC 59.626 38.462 0.00 0.00 0.00 3.18
3323 3527 6.374333 GTGAGGGTGTTAGCATCTTATTTTGA 59.626 38.462 0.00 0.00 0.00 2.69
3324 3528 6.150976 TGTGAGGGTGTTAGCATCTTATTTTG 59.849 38.462 0.00 0.00 0.00 2.44
3325 3529 6.151144 GTGTGAGGGTGTTAGCATCTTATTTT 59.849 38.462 0.00 0.00 0.00 1.82
3326 3530 5.648092 GTGTGAGGGTGTTAGCATCTTATTT 59.352 40.000 0.00 0.00 0.00 1.40
3327 3531 5.186198 GTGTGAGGGTGTTAGCATCTTATT 58.814 41.667 0.00 0.00 0.00 1.40
3328 3532 4.384208 GGTGTGAGGGTGTTAGCATCTTAT 60.384 45.833 0.00 0.00 0.00 1.73
3329 3533 3.055385 GGTGTGAGGGTGTTAGCATCTTA 60.055 47.826 0.00 0.00 0.00 2.10
3330 3534 2.290323 GGTGTGAGGGTGTTAGCATCTT 60.290 50.000 0.00 0.00 0.00 2.40
3331 3535 1.279271 GGTGTGAGGGTGTTAGCATCT 59.721 52.381 0.00 0.00 0.00 2.90
3332 3536 1.003118 TGGTGTGAGGGTGTTAGCATC 59.997 52.381 0.00 0.00 0.00 3.91
3333 3537 1.064003 TGGTGTGAGGGTGTTAGCAT 58.936 50.000 0.00 0.00 0.00 3.79
3334 3538 0.840617 TTGGTGTGAGGGTGTTAGCA 59.159 50.000 0.00 0.00 0.00 3.49
3335 3539 1.880027 CTTTGGTGTGAGGGTGTTAGC 59.120 52.381 0.00 0.00 0.00 3.09
3336 3540 3.208747 ACTTTGGTGTGAGGGTGTTAG 57.791 47.619 0.00 0.00 0.00 2.34
3337 3541 3.968649 TCTACTTTGGTGTGAGGGTGTTA 59.031 43.478 0.00 0.00 0.00 2.41
3338 3542 2.775384 TCTACTTTGGTGTGAGGGTGTT 59.225 45.455 0.00 0.00 0.00 3.32
3339 3543 2.404559 TCTACTTTGGTGTGAGGGTGT 58.595 47.619 0.00 0.00 0.00 4.16
3340 3544 3.485463 TTCTACTTTGGTGTGAGGGTG 57.515 47.619 0.00 0.00 0.00 4.61
3341 3545 4.724279 AATTCTACTTTGGTGTGAGGGT 57.276 40.909 0.00 0.00 0.00 4.34
3342 3546 5.070001 TGAAATTCTACTTTGGTGTGAGGG 58.930 41.667 0.00 0.00 0.00 4.30
3343 3547 6.633500 TTGAAATTCTACTTTGGTGTGAGG 57.367 37.500 0.00 0.00 0.00 3.86
3344 3548 6.016777 AGCTTGAAATTCTACTTTGGTGTGAG 60.017 38.462 0.00 0.00 0.00 3.51
3345 3549 5.827797 AGCTTGAAATTCTACTTTGGTGTGA 59.172 36.000 0.00 0.00 0.00 3.58
3346 3550 6.076981 AGCTTGAAATTCTACTTTGGTGTG 57.923 37.500 0.00 0.00 0.00 3.82
3347 3551 7.284489 TGTTAGCTTGAAATTCTACTTTGGTGT 59.716 33.333 0.00 0.00 0.00 4.16
3348 3552 7.591426 GTGTTAGCTTGAAATTCTACTTTGGTG 59.409 37.037 0.00 0.00 0.00 4.17
3349 3553 7.255486 GGTGTTAGCTTGAAATTCTACTTTGGT 60.255 37.037 0.00 0.00 0.00 3.67
3350 3554 7.040409 AGGTGTTAGCTTGAAATTCTACTTTGG 60.040 37.037 0.00 0.00 0.00 3.28
3351 3555 7.875971 AGGTGTTAGCTTGAAATTCTACTTTG 58.124 34.615 0.00 0.00 0.00 2.77
3352 3556 8.465273 AAGGTGTTAGCTTGAAATTCTACTTT 57.535 30.769 0.00 0.00 34.21 2.66
3353 3557 7.719633 TGAAGGTGTTAGCTTGAAATTCTACTT 59.280 33.333 0.00 0.00 35.86 2.24
3354 3558 7.224297 TGAAGGTGTTAGCTTGAAATTCTACT 58.776 34.615 0.00 0.00 35.86 2.57
3355 3559 7.435068 TGAAGGTGTTAGCTTGAAATTCTAC 57.565 36.000 0.00 0.00 35.86 2.59
3356 3560 7.500892 TGTTGAAGGTGTTAGCTTGAAATTCTA 59.499 33.333 0.00 0.00 35.86 2.10
3357 3561 6.321181 TGTTGAAGGTGTTAGCTTGAAATTCT 59.679 34.615 0.00 0.00 35.86 2.40
3358 3562 6.503524 TGTTGAAGGTGTTAGCTTGAAATTC 58.496 36.000 0.00 0.00 35.86 2.17
3359 3563 6.463995 TGTTGAAGGTGTTAGCTTGAAATT 57.536 33.333 0.00 0.00 35.86 1.82
3360 3564 6.463995 TTGTTGAAGGTGTTAGCTTGAAAT 57.536 33.333 0.00 0.00 35.86 2.17
3361 3565 5.906113 TTGTTGAAGGTGTTAGCTTGAAA 57.094 34.783 0.00 0.00 35.86 2.69
3362 3566 5.650266 TCTTTGTTGAAGGTGTTAGCTTGAA 59.350 36.000 0.00 0.00 35.86 2.69
3363 3567 5.189928 TCTTTGTTGAAGGTGTTAGCTTGA 58.810 37.500 0.00 0.00 35.86 3.02
3364 3568 5.499139 TCTTTGTTGAAGGTGTTAGCTTG 57.501 39.130 0.00 0.00 35.86 4.01
3365 3569 6.524101 TTTCTTTGTTGAAGGTGTTAGCTT 57.476 33.333 0.00 0.00 38.85 3.74
3366 3570 6.524101 TTTTCTTTGTTGAAGGTGTTAGCT 57.476 33.333 0.00 0.00 35.98 3.32
3388 3592 2.933573 TGGTGTATGTGGGTCGTTTTT 58.066 42.857 0.00 0.00 0.00 1.94
3389 3593 2.619646 GTTGGTGTATGTGGGTCGTTTT 59.380 45.455 0.00 0.00 0.00 2.43
3390 3594 2.223745 GTTGGTGTATGTGGGTCGTTT 58.776 47.619 0.00 0.00 0.00 3.60
3391 3595 1.141254 TGTTGGTGTATGTGGGTCGTT 59.859 47.619 0.00 0.00 0.00 3.85
3392 3596 0.759959 TGTTGGTGTATGTGGGTCGT 59.240 50.000 0.00 0.00 0.00 4.34
3393 3597 1.153353 GTGTTGGTGTATGTGGGTCG 58.847 55.000 0.00 0.00 0.00 4.79
3394 3598 2.151202 CAGTGTTGGTGTATGTGGGTC 58.849 52.381 0.00 0.00 0.00 4.46
3395 3599 1.817740 GCAGTGTTGGTGTATGTGGGT 60.818 52.381 0.00 0.00 0.00 4.51
3396 3600 0.881118 GCAGTGTTGGTGTATGTGGG 59.119 55.000 0.00 0.00 0.00 4.61
3397 3601 1.896220 AGCAGTGTTGGTGTATGTGG 58.104 50.000 0.00 0.00 32.86 4.17
3398 3602 3.925379 TCTAGCAGTGTTGGTGTATGTG 58.075 45.455 0.00 0.00 36.27 3.21
3399 3603 4.467795 AGATCTAGCAGTGTTGGTGTATGT 59.532 41.667 0.00 0.00 36.27 2.29
3400 3604 5.016051 AGATCTAGCAGTGTTGGTGTATG 57.984 43.478 0.00 0.00 36.27 2.39
3401 3605 4.202060 CGAGATCTAGCAGTGTTGGTGTAT 60.202 45.833 0.00 0.00 36.27 2.29
3402 3606 3.128764 CGAGATCTAGCAGTGTTGGTGTA 59.871 47.826 0.00 0.00 36.27 2.90
3403 3607 2.094494 CGAGATCTAGCAGTGTTGGTGT 60.094 50.000 0.00 0.00 36.27 4.16
3404 3608 2.534298 CGAGATCTAGCAGTGTTGGTG 58.466 52.381 0.00 0.00 36.27 4.17
3405 3609 1.134965 GCGAGATCTAGCAGTGTTGGT 60.135 52.381 21.36 0.00 38.79 3.67
3406 3610 1.134995 TGCGAGATCTAGCAGTGTTGG 60.135 52.381 24.50 0.00 36.32 3.77
3407 3611 2.284263 TGCGAGATCTAGCAGTGTTG 57.716 50.000 24.50 0.00 36.32 3.33
3408 3612 2.428530 TCATGCGAGATCTAGCAGTGTT 59.571 45.455 30.04 14.75 43.98 3.32
3409 3613 2.027385 TCATGCGAGATCTAGCAGTGT 58.973 47.619 30.04 15.08 43.98 3.55
3410 3614 2.789491 TCATGCGAGATCTAGCAGTG 57.211 50.000 30.04 25.56 43.98 3.66
3411 3615 2.035704 CCTTCATGCGAGATCTAGCAGT 59.964 50.000 30.04 17.95 43.98 4.40
3412 3616 2.674954 CCTTCATGCGAGATCTAGCAG 58.325 52.381 30.04 22.27 43.98 4.24
3413 3617 1.269988 GCCTTCATGCGAGATCTAGCA 60.270 52.381 29.11 29.11 44.79 3.49
3414 3618 1.427435 GCCTTCATGCGAGATCTAGC 58.573 55.000 19.76 19.76 0.00 3.42
3415 3619 1.342496 TGGCCTTCATGCGAGATCTAG 59.658 52.381 3.32 0.00 0.00 2.43
3416 3620 1.413118 TGGCCTTCATGCGAGATCTA 58.587 50.000 3.32 0.00 0.00 1.98
3417 3621 0.543277 TTGGCCTTCATGCGAGATCT 59.457 50.000 3.32 0.00 0.00 2.75
3418 3622 1.382522 TTTGGCCTTCATGCGAGATC 58.617 50.000 3.32 0.00 0.00 2.75
3419 3623 1.952296 GATTTGGCCTTCATGCGAGAT 59.048 47.619 3.32 0.00 0.00 2.75
3420 3624 1.382522 GATTTGGCCTTCATGCGAGA 58.617 50.000 3.32 0.00 0.00 4.04
3421 3625 0.028505 CGATTTGGCCTTCATGCGAG 59.971 55.000 3.32 0.00 0.00 5.03
3422 3626 0.676466 ACGATTTGGCCTTCATGCGA 60.676 50.000 3.32 0.00 0.00 5.10
3423 3627 0.523968 CACGATTTGGCCTTCATGCG 60.524 55.000 3.32 2.91 0.00 4.73
3424 3628 0.810648 TCACGATTTGGCCTTCATGC 59.189 50.000 3.32 0.00 0.00 4.06
3425 3629 2.086869 AGTCACGATTTGGCCTTCATG 58.913 47.619 3.32 0.00 0.00 3.07
3426 3630 2.496899 AGTCACGATTTGGCCTTCAT 57.503 45.000 3.32 0.00 0.00 2.57
3427 3631 2.270352 AAGTCACGATTTGGCCTTCA 57.730 45.000 3.32 0.00 0.00 3.02
3428 3632 3.004315 TGAAAAGTCACGATTTGGCCTTC 59.996 43.478 3.32 0.00 0.00 3.46
3429 3633 2.955660 TGAAAAGTCACGATTTGGCCTT 59.044 40.909 3.32 0.00 0.00 4.35
3430 3634 2.582052 TGAAAAGTCACGATTTGGCCT 58.418 42.857 3.32 0.00 0.00 5.19
3431 3635 3.191371 AGATGAAAAGTCACGATTTGGCC 59.809 43.478 0.00 0.00 36.31 5.36
3432 3636 4.161333 CAGATGAAAAGTCACGATTTGGC 58.839 43.478 0.00 0.00 36.31 4.52
3433 3637 5.049474 TGACAGATGAAAAGTCACGATTTGG 60.049 40.000 0.00 0.00 37.36 3.28
3434 3638 5.989249 TGACAGATGAAAAGTCACGATTTG 58.011 37.500 0.00 0.00 37.36 2.32
3435 3639 6.618287 TTGACAGATGAAAAGTCACGATTT 57.382 33.333 0.00 0.00 41.53 2.17
3436 3640 6.427853 TGATTGACAGATGAAAAGTCACGATT 59.572 34.615 0.00 0.00 41.53 3.34
3437 3641 5.934043 TGATTGACAGATGAAAAGTCACGAT 59.066 36.000 0.00 0.00 41.53 3.73
3438 3642 5.296748 TGATTGACAGATGAAAAGTCACGA 58.703 37.500 0.00 0.00 41.53 4.35
3439 3643 5.596268 TGATTGACAGATGAAAAGTCACG 57.404 39.130 0.00 0.00 41.53 4.35
3440 3644 6.149973 TGGATGATTGACAGATGAAAAGTCAC 59.850 38.462 0.00 0.00 41.53 3.67
3441 3645 6.240145 TGGATGATTGACAGATGAAAAGTCA 58.760 36.000 0.00 0.00 40.24 3.41
3442 3646 6.748333 TGGATGATTGACAGATGAAAAGTC 57.252 37.500 0.00 0.00 0.00 3.01
3443 3647 6.662234 ACATGGATGATTGACAGATGAAAAGT 59.338 34.615 0.00 0.00 0.00 2.66
3444 3648 7.096884 ACATGGATGATTGACAGATGAAAAG 57.903 36.000 0.00 0.00 0.00 2.27
3445 3649 6.183360 CGACATGGATGATTGACAGATGAAAA 60.183 38.462 0.00 0.00 0.00 2.29
3446 3650 5.295045 CGACATGGATGATTGACAGATGAAA 59.705 40.000 0.00 0.00 0.00 2.69
3447 3651 4.812626 CGACATGGATGATTGACAGATGAA 59.187 41.667 0.00 0.00 0.00 2.57
3448 3652 4.141869 ACGACATGGATGATTGACAGATGA 60.142 41.667 0.00 0.00 0.00 2.92
3449 3653 4.124970 ACGACATGGATGATTGACAGATG 58.875 43.478 0.00 0.00 0.00 2.90
3450 3654 4.141869 TGACGACATGGATGATTGACAGAT 60.142 41.667 0.00 0.00 0.00 2.90
3451 3655 3.195396 TGACGACATGGATGATTGACAGA 59.805 43.478 0.00 0.00 0.00 3.41
3452 3656 3.308053 GTGACGACATGGATGATTGACAG 59.692 47.826 0.00 0.00 0.00 3.51
3453 3657 3.261580 GTGACGACATGGATGATTGACA 58.738 45.455 0.00 0.00 0.00 3.58
3454 3658 2.609459 GGTGACGACATGGATGATTGAC 59.391 50.000 0.00 0.00 0.00 3.18
3455 3659 2.905075 GGTGACGACATGGATGATTGA 58.095 47.619 0.00 0.00 0.00 2.57
3470 3674 1.218316 GGGATGAGTGGTCGGTGAC 59.782 63.158 0.00 0.00 0.00 3.67
3471 3675 0.970937 GAGGGATGAGTGGTCGGTGA 60.971 60.000 0.00 0.00 0.00 4.02
3472 3676 0.972983 AGAGGGATGAGTGGTCGGTG 60.973 60.000 0.00 0.00 0.00 4.94
3473 3677 0.684805 GAGAGGGATGAGTGGTCGGT 60.685 60.000 0.00 0.00 0.00 4.69
3474 3678 0.684479 TGAGAGGGATGAGTGGTCGG 60.684 60.000 0.00 0.00 0.00 4.79
3475 3679 0.457851 GTGAGAGGGATGAGTGGTCG 59.542 60.000 0.00 0.00 0.00 4.79
3476 3680 0.457851 CGTGAGAGGGATGAGTGGTC 59.542 60.000 0.00 0.00 0.00 4.02
3477 3681 1.608717 GCGTGAGAGGGATGAGTGGT 61.609 60.000 0.00 0.00 0.00 4.16
3478 3682 1.142748 GCGTGAGAGGGATGAGTGG 59.857 63.158 0.00 0.00 0.00 4.00
3479 3683 0.179116 CTGCGTGAGAGGGATGAGTG 60.179 60.000 0.00 0.00 0.00 3.51
3480 3684 1.954362 GCTGCGTGAGAGGGATGAGT 61.954 60.000 0.00 0.00 0.00 3.41
3481 3685 1.227205 GCTGCGTGAGAGGGATGAG 60.227 63.158 0.00 0.00 0.00 2.90
3482 3686 2.725312 GGCTGCGTGAGAGGGATGA 61.725 63.158 0.00 0.00 0.00 2.92
3483 3687 2.202987 GGCTGCGTGAGAGGGATG 60.203 66.667 0.00 0.00 0.00 3.51
3484 3688 3.842923 CGGCTGCGTGAGAGGGAT 61.843 66.667 0.00 0.00 0.00 3.85
3497 3701 2.210144 TAATGCTCCTTTGGCCGGCT 62.210 55.000 28.56 3.67 0.00 5.52
3498 3702 1.728490 CTAATGCTCCTTTGGCCGGC 61.728 60.000 21.18 21.18 0.00 6.13
3499 3703 0.394352 ACTAATGCTCCTTTGGCCGG 60.394 55.000 0.00 0.00 0.00 6.13
3500 3704 1.133025 CAACTAATGCTCCTTTGGCCG 59.867 52.381 0.00 0.00 0.00 6.13
3501 3705 2.947448 CAACTAATGCTCCTTTGGCC 57.053 50.000 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.