Multiple sequence alignment - TraesCS6A01G404500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G404500 chr6A 100.000 3717 0 0 1 3717 611080477 611076761 0.000000e+00 6865.0
1 TraesCS6A01G404500 chr6A 100.000 28 0 0 2451 2478 223414105 223414078 7.000000e-03 52.8
2 TraesCS6A01G404500 chr6D 90.012 3344 196 61 27 3311 464497943 464494679 0.000000e+00 4198.0
3 TraesCS6A01G404500 chr6D 92.683 82 4 2 3593 3672 464494682 464494601 2.350000e-22 117.0
4 TraesCS6A01G404500 chr6D 100.000 28 0 0 2451 2478 163135298 163135271 7.000000e-03 52.8
5 TraesCS6A01G404500 chr6B 89.646 2376 142 53 985 3311 708273120 708270800 0.000000e+00 2929.0
6 TraesCS6A01G404500 chr6B 85.327 443 17 13 1 434 708274043 708273640 7.430000e-112 414.0
7 TraesCS6A01G404500 chr6B 82.308 520 29 33 420 907 708273622 708273134 3.480000e-105 392.0
8 TraesCS6A01G404500 chr6B 83.784 111 8 4 3593 3693 708270770 708270660 3.060000e-16 97.1
9 TraesCS6A01G404500 chr3D 88.214 280 31 2 3318 3597 43027946 43027669 2.140000e-87 333.0
10 TraesCS6A01G404500 chr2A 87.500 280 32 1 3318 3597 19073705 19073981 1.670000e-83 320.0
11 TraesCS6A01G404500 chr2A 86.411 287 36 2 3310 3596 694822589 694822306 1.000000e-80 311.0
12 TraesCS6A01G404500 chr2A 100.000 28 0 0 639 666 643175356 643175383 7.000000e-03 52.8
13 TraesCS6A01G404500 chr3A 87.189 281 35 1 3318 3598 703772989 703773268 5.990000e-83 318.0
14 TraesCS6A01G404500 chr4A 86.411 287 38 1 3309 3595 548783070 548783355 2.790000e-81 313.0
15 TraesCS6A01G404500 chr1D 86.505 289 34 5 3309 3595 340521741 340522026 2.790000e-81 313.0
16 TraesCS6A01G404500 chr7D 86.364 286 38 1 3309 3594 587092460 587092744 1.000000e-80 311.0
17 TraesCS6A01G404500 chr7B 86.207 290 37 3 3309 3597 734380107 734380394 1.000000e-80 311.0
18 TraesCS6A01G404500 chr7A 85.382 301 40 4 3298 3597 26172922 26172625 3.610000e-80 309.0
19 TraesCS6A01G404500 chr3B 91.905 210 17 0 2184 2393 96067669 96067878 1.010000e-75 294.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G404500 chr6A 611076761 611080477 3716 True 6865.000 6865 100.00000 1 3717 1 chr6A.!!$R2 3716
1 TraesCS6A01G404500 chr6D 464494601 464497943 3342 True 2157.500 4198 91.34750 27 3672 2 chr6D.!!$R2 3645
2 TraesCS6A01G404500 chr6B 708270660 708274043 3383 True 958.025 2929 85.26625 1 3693 4 chr6B.!!$R1 3692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
820 886 0.033228 CTCCGTCCATGGCTCATCTC 59.967 60.0 6.96 0.00 0.0 2.75 F
974 1050 0.388520 CAGTGCACTAGTACGCAGCA 60.389 55.0 21.20 4.52 39.2 4.41 F
1611 1727 0.528901 ACGCACGCACTGACTTTACA 60.529 50.0 0.00 0.00 0.0 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1805 1921 0.106708 TGCAGCTTCTCGAACACCTT 59.893 50.0 0.00 0.0 0.00 3.50 R
1806 1922 0.320247 CTGCAGCTTCTCGAACACCT 60.320 55.0 0.00 0.0 0.00 4.00 R
2752 2874 0.323725 ATAATCATCATGCCCCGGCC 60.324 55.0 2.62 0.0 41.09 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.770294 TGAAAAAGGTTCCTTGCGGT 58.230 45.000 4.77 0.00 0.00 5.68
134 142 7.399634 CCTACAGTTTAGTTAAATTCCAGGGA 58.600 38.462 0.00 0.00 0.00 4.20
271 279 1.749634 GCAAGGAAGCTTCATGATGCT 59.250 47.619 25.90 25.90 42.66 3.79
281 289 3.409570 CTTCATGATGCTCATACCCAGG 58.590 50.000 0.00 0.00 34.28 4.45
301 309 0.937304 ATACGCACGGCATAAGCAAG 59.063 50.000 0.00 0.00 44.61 4.01
304 312 2.800736 CACGGCATAAGCAAGGGC 59.199 61.111 0.00 0.00 44.61 5.19
305 313 2.045708 CACGGCATAAGCAAGGGCA 61.046 57.895 0.00 0.00 44.61 5.36
306 314 1.076777 ACGGCATAAGCAAGGGCAT 60.077 52.632 0.00 0.00 44.61 4.40
307 315 0.182537 ACGGCATAAGCAAGGGCATA 59.817 50.000 0.00 0.00 44.61 3.14
308 316 1.202927 ACGGCATAAGCAAGGGCATAT 60.203 47.619 0.00 0.00 44.61 1.78
309 317 2.039746 ACGGCATAAGCAAGGGCATATA 59.960 45.455 0.00 0.00 44.61 0.86
310 318 2.420022 CGGCATAAGCAAGGGCATATAC 59.580 50.000 0.00 0.00 44.61 1.47
311 319 3.690460 GGCATAAGCAAGGGCATATACT 58.310 45.455 0.00 0.00 44.61 2.12
312 320 3.691609 GGCATAAGCAAGGGCATATACTC 59.308 47.826 0.00 0.00 44.61 2.59
355 363 4.209288 CCGCGGTGAGTATAAATCTTTGAG 59.791 45.833 19.50 0.00 0.00 3.02
374 382 2.340337 AGCACGTACGTTGGTATTTCC 58.660 47.619 20.23 0.47 0.00 3.13
375 383 2.067766 GCACGTACGTTGGTATTTCCA 58.932 47.619 20.23 0.00 45.60 3.53
400 408 5.464030 AAAGGATCTGGAAATATGCATGC 57.536 39.130 11.82 11.82 0.00 4.06
401 409 4.108501 AGGATCTGGAAATATGCATGCA 57.891 40.909 25.04 25.04 0.00 3.96
402 410 4.673968 AGGATCTGGAAATATGCATGCAT 58.326 39.130 33.92 33.92 40.19 3.96
403 411 4.462834 AGGATCTGGAAATATGCATGCATG 59.537 41.667 37.43 22.70 37.82 4.06
431 439 2.804933 GCGGGAATGAGAATCTGGACTC 60.805 54.545 0.00 0.00 34.92 3.36
432 440 2.697751 CGGGAATGAGAATCTGGACTCT 59.302 50.000 0.00 0.00 34.92 3.24
435 443 5.504853 GGGAATGAGAATCTGGACTCTTTT 58.495 41.667 0.00 0.00 33.08 2.27
437 445 6.413892 GGAATGAGAATCTGGACTCTTTTCT 58.586 40.000 0.00 0.00 33.08 2.52
440 448 7.920160 ATGAGAATCTGGACTCTTTTCTTTC 57.080 36.000 0.00 0.00 34.92 2.62
441 449 7.072263 TGAGAATCTGGACTCTTTTCTTTCT 57.928 36.000 0.00 0.00 34.92 2.52
442 450 7.512992 TGAGAATCTGGACTCTTTTCTTTCTT 58.487 34.615 0.00 0.00 34.92 2.52
443 451 7.659390 TGAGAATCTGGACTCTTTTCTTTCTTC 59.341 37.037 0.00 0.00 34.92 2.87
475 517 9.383519 TGAGAATCTGGACTTAAACATGTAATC 57.616 33.333 0.00 0.00 34.92 1.75
477 519 9.388506 AGAATCTGGACTTAAACATGTAATCAG 57.611 33.333 0.00 1.25 0.00 2.90
480 522 6.878923 TCTGGACTTAAACATGTAATCAGTGG 59.121 38.462 0.00 0.00 0.00 4.00
485 527 7.315142 ACTTAAACATGTAATCAGTGGCATTG 58.685 34.615 3.22 3.22 0.00 2.82
506 554 8.125448 GCATTGTAATTAAGGTAGCAGAGAAAG 58.875 37.037 0.00 0.00 0.00 2.62
510 558 2.663826 AAGGTAGCAGAGAAAGCTCG 57.336 50.000 0.00 0.00 45.98 5.03
512 560 1.142778 GGTAGCAGAGAAAGCTCGCG 61.143 60.000 0.00 0.00 45.98 5.87
524 580 2.522836 AGCTCGCGATCAATCAATCT 57.477 45.000 10.36 0.00 0.00 2.40
547 603 2.471815 ATATTCCCTGACCGGTCTGA 57.528 50.000 35.26 25.00 0.00 3.27
567 623 1.359459 AAAATCGTTCGCCGGAGCTC 61.359 55.000 5.05 4.71 36.60 4.09
616 678 4.749245 TTGACCGAGAAATTTGAAGCTC 57.251 40.909 0.00 0.00 0.00 4.09
640 702 0.111266 CGCAAGTGAAAACGAGACGG 60.111 55.000 0.00 0.00 0.00 4.79
641 703 0.234884 GCAAGTGAAAACGAGACGGG 59.765 55.000 0.00 0.00 0.00 5.28
643 705 0.250166 AAGTGAAAACGAGACGGGGG 60.250 55.000 0.00 0.00 0.00 5.40
700 762 4.752879 GGAGCCAAGCCGCGTACA 62.753 66.667 4.92 0.00 0.00 2.90
701 763 3.488090 GAGCCAAGCCGCGTACAC 61.488 66.667 4.92 0.00 0.00 2.90
712 778 2.671177 GCGTACACCACTGCTGCTG 61.671 63.158 4.89 4.89 0.00 4.41
748 814 2.107141 GCCTCCGACCATTCCTCG 59.893 66.667 0.00 0.00 0.00 4.63
749 815 2.107141 CCTCCGACCATTCCTCGC 59.893 66.667 0.00 0.00 0.00 5.03
750 816 2.107141 CTCCGACCATTCCTCGCC 59.893 66.667 0.00 0.00 0.00 5.54
751 817 3.774959 CTCCGACCATTCCTCGCCG 62.775 68.421 0.00 0.00 0.00 6.46
754 820 3.467226 GACCATTCCTCGCCGGGA 61.467 66.667 2.18 0.00 0.00 5.14
767 833 2.597805 CGGGAGGGATCGATCGGT 60.598 66.667 18.81 8.34 0.00 4.69
768 834 2.920645 CGGGAGGGATCGATCGGTG 61.921 68.421 18.81 2.30 0.00 4.94
769 835 1.530891 GGGAGGGATCGATCGGTGA 60.531 63.158 18.81 0.00 0.00 4.02
815 881 4.899239 CGCCTCCGTCCATGGCTC 62.899 72.222 6.96 1.49 44.09 4.70
816 882 3.785859 GCCTCCGTCCATGGCTCA 61.786 66.667 6.96 0.00 43.05 4.26
820 886 0.033228 CTCCGTCCATGGCTCATCTC 59.967 60.000 6.96 0.00 0.00 2.75
824 890 0.396060 GTCCATGGCTCATCTCCTCC 59.604 60.000 6.96 0.00 0.00 4.30
825 891 0.765903 TCCATGGCTCATCTCCTCCC 60.766 60.000 6.96 0.00 0.00 4.30
827 895 1.058428 CATGGCTCATCTCCTCCCCA 61.058 60.000 0.00 0.00 0.00 4.96
830 898 0.473501 GGCTCATCTCCTCCCCATCT 60.474 60.000 0.00 0.00 0.00 2.90
846 914 5.078715 TCCCCATCTCCTCTATATAAACCCA 59.921 44.000 0.00 0.00 0.00 4.51
847 915 5.189934 CCCCATCTCCTCTATATAAACCCAC 59.810 48.000 0.00 0.00 0.00 4.61
849 917 6.026186 CCATCTCCTCTATATAAACCCACCT 58.974 44.000 0.00 0.00 0.00 4.00
850 918 7.189794 CCATCTCCTCTATATAAACCCACCTA 58.810 42.308 0.00 0.00 0.00 3.08
851 919 7.124448 CCATCTCCTCTATATAAACCCACCTAC 59.876 44.444 0.00 0.00 0.00 3.18
852 920 7.170554 TCTCCTCTATATAAACCCACCTACA 57.829 40.000 0.00 0.00 0.00 2.74
853 921 7.776745 TCTCCTCTATATAAACCCACCTACAT 58.223 38.462 0.00 0.00 0.00 2.29
854 922 7.894364 TCTCCTCTATATAAACCCACCTACATC 59.106 40.741 0.00 0.00 0.00 3.06
913 989 4.491602 CGACATTCTTCGCTTCACTGAATC 60.492 45.833 0.00 0.00 31.03 2.52
915 991 3.685139 TTCTTCGCTTCACTGAATCCT 57.315 42.857 0.00 0.00 0.00 3.24
916 992 4.801330 TTCTTCGCTTCACTGAATCCTA 57.199 40.909 0.00 0.00 0.00 2.94
918 994 4.938080 TCTTCGCTTCACTGAATCCTATC 58.062 43.478 0.00 0.00 0.00 2.08
919 995 3.735237 TCGCTTCACTGAATCCTATCC 57.265 47.619 0.00 0.00 0.00 2.59
920 996 3.031013 TCGCTTCACTGAATCCTATCCA 58.969 45.455 0.00 0.00 0.00 3.41
921 997 3.643320 TCGCTTCACTGAATCCTATCCAT 59.357 43.478 0.00 0.00 0.00 3.41
924 1000 5.558818 GCTTCACTGAATCCTATCCATCAT 58.441 41.667 0.00 0.00 0.00 2.45
925 1001 5.642919 GCTTCACTGAATCCTATCCATCATC 59.357 44.000 0.00 0.00 0.00 2.92
926 1002 6.520401 GCTTCACTGAATCCTATCCATCATCT 60.520 42.308 0.00 0.00 0.00 2.90
927 1003 7.384524 TTCACTGAATCCTATCCATCATCTT 57.615 36.000 0.00 0.00 0.00 2.40
928 1004 7.002250 TCACTGAATCCTATCCATCATCTTC 57.998 40.000 0.00 0.00 0.00 2.87
931 1007 7.549842 CACTGAATCCTATCCATCATCTTCATC 59.450 40.741 0.00 0.00 0.00 2.92
936 1012 2.538512 TCCATCATCTTCATCGCCAG 57.461 50.000 0.00 0.00 0.00 4.85
944 1020 4.883585 TCATCTTCATCGCCAGCTTAATTT 59.116 37.500 0.00 0.00 0.00 1.82
947 1023 4.572389 TCTTCATCGCCAGCTTAATTTCTC 59.428 41.667 0.00 0.00 0.00 2.87
948 1024 2.866156 TCATCGCCAGCTTAATTTCTCG 59.134 45.455 0.00 0.00 0.00 4.04
949 1025 2.665649 TCGCCAGCTTAATTTCTCGA 57.334 45.000 0.00 0.00 0.00 4.04
953 1029 3.123804 GCCAGCTTAATTTCTCGATCGA 58.876 45.455 18.32 18.32 0.00 3.59
954 1030 3.555956 GCCAGCTTAATTTCTCGATCGAA 59.444 43.478 19.92 4.68 0.00 3.71
955 1031 4.551024 GCCAGCTTAATTTCTCGATCGAAC 60.551 45.833 19.92 0.63 0.00 3.95
956 1032 4.566759 CCAGCTTAATTTCTCGATCGAACA 59.433 41.667 19.92 5.77 0.00 3.18
957 1033 5.276584 CCAGCTTAATTTCTCGATCGAACAG 60.277 44.000 19.92 7.91 0.00 3.16
958 1034 5.289675 CAGCTTAATTTCTCGATCGAACAGT 59.710 40.000 19.92 7.57 0.00 3.55
959 1035 5.289675 AGCTTAATTTCTCGATCGAACAGTG 59.710 40.000 19.92 7.13 0.00 3.66
960 1036 3.999229 AATTTCTCGATCGAACAGTGC 57.001 42.857 19.92 0.00 0.00 4.40
961 1037 2.432206 TTTCTCGATCGAACAGTGCA 57.568 45.000 19.92 0.00 0.00 4.57
962 1038 1.698165 TTCTCGATCGAACAGTGCAC 58.302 50.000 19.92 9.40 0.00 4.57
963 1039 0.881796 TCTCGATCGAACAGTGCACT 59.118 50.000 19.92 15.25 0.00 4.40
964 1040 2.081462 TCTCGATCGAACAGTGCACTA 58.919 47.619 21.20 3.40 0.00 2.74
965 1041 2.096013 TCTCGATCGAACAGTGCACTAG 59.904 50.000 21.20 16.11 0.00 2.57
968 1044 3.099362 CGATCGAACAGTGCACTAGTAC 58.901 50.000 21.20 10.37 0.00 2.73
969 1045 2.606717 TCGAACAGTGCACTAGTACG 57.393 50.000 21.20 20.81 35.31 3.67
971 1047 1.664874 CGAACAGTGCACTAGTACGCA 60.665 52.381 21.20 6.61 35.31 5.24
972 1048 1.986378 GAACAGTGCACTAGTACGCAG 59.014 52.381 21.20 7.04 39.20 5.18
973 1049 0.388649 ACAGTGCACTAGTACGCAGC 60.389 55.000 21.20 1.81 39.20 5.25
974 1050 0.388520 CAGTGCACTAGTACGCAGCA 60.389 55.000 21.20 4.52 39.20 4.41
975 1051 4.571250 TGCACTAGTACGCAGCAC 57.429 55.556 3.87 0.00 33.34 4.40
976 1052 1.674611 GTGCACTAGTACGCAGCACG 61.675 60.000 16.60 0.00 44.84 5.34
989 1065 2.184322 GCACGTGGCAGCTAGCTA 59.816 61.111 18.86 0.00 44.79 3.32
990 1066 1.880340 GCACGTGGCAGCTAGCTAG 60.880 63.158 18.86 16.84 44.79 3.42
1528 1616 2.362077 ACCAACCTCAACGTACGTACTT 59.638 45.455 23.12 11.60 0.00 2.24
1531 1619 3.715628 ACCTCAACGTACGTACTTGTT 57.284 42.857 23.12 16.70 0.00 2.83
1532 1620 4.829064 ACCTCAACGTACGTACTTGTTA 57.171 40.909 23.12 10.29 0.00 2.41
1534 1622 6.494893 ACCTCAACGTACGTACTTGTTATA 57.505 37.500 23.12 10.85 0.00 0.98
1561 1649 2.943690 ACGTGTAGCGATCTGTGATACT 59.056 45.455 0.00 0.00 44.77 2.12
1611 1727 0.528901 ACGCACGCACTGACTTTACA 60.529 50.000 0.00 0.00 0.00 2.41
1616 1732 3.370978 GCACGCACTGACTTTACATATGT 59.629 43.478 13.93 13.93 0.00 2.29
1640 1756 1.153309 CTGCAGGACATGATCGGCA 60.153 57.895 5.57 8.57 36.96 5.69
1642 1758 0.533531 TGCAGGACATGATCGGCATC 60.534 55.000 0.00 0.00 34.46 3.91
1726 1842 3.537874 GCGGGGGCAGTCGTAGAT 61.538 66.667 0.00 0.00 40.67 1.98
1771 1887 2.730733 GCGGAGATCATCGCCAGA 59.269 61.111 18.00 0.00 45.42 3.86
2010 2126 2.678324 CGGTCAGGAGAAGAAGAACAC 58.322 52.381 0.00 0.00 0.00 3.32
2560 2679 1.374252 CGTGGGAAGGAACCTGACG 60.374 63.158 0.00 0.00 32.80 4.35
2690 2809 4.200283 GCGTCCAGCTCCTCCTCG 62.200 72.222 0.00 0.00 44.04 4.63
2749 2871 3.414700 GCACGTGAGCAAGTCCCG 61.415 66.667 22.23 0.00 0.00 5.14
2750 2872 2.738521 CACGTGAGCAAGTCCCGG 60.739 66.667 10.90 0.00 0.00 5.73
2751 2873 4.003788 ACGTGAGCAAGTCCCGGG 62.004 66.667 16.85 16.85 0.00 5.73
2752 2874 4.760047 CGTGAGCAAGTCCCGGGG 62.760 72.222 23.50 6.77 0.00 5.73
2753 2875 4.410400 GTGAGCAAGTCCCGGGGG 62.410 72.222 23.50 9.40 0.00 5.40
2835 2957 5.991328 ACAAGTGCTCAACGGAATATATG 57.009 39.130 0.00 0.00 0.00 1.78
2839 2961 5.057149 AGTGCTCAACGGAATATATGGAAC 58.943 41.667 0.00 0.00 0.00 3.62
2957 3084 8.308931 ACAAAACAAATATACCGAGTGAGACTA 58.691 33.333 0.00 0.00 0.00 2.59
2958 3085 8.808529 CAAAACAAATATACCGAGTGAGACTAG 58.191 37.037 0.00 0.00 0.00 2.57
2970 3100 5.089970 AGTGAGACTAGTATGCATGCAAA 57.910 39.130 26.68 9.73 0.00 3.68
2995 3125 3.193903 AGCTGTGCATGCATGAATTGTTA 59.806 39.130 30.64 7.35 0.00 2.41
3000 3130 7.436430 TGTGCATGCATGAATTGTTATTTTT 57.564 28.000 30.64 0.00 0.00 1.94
3218 3358 3.071459 GCGTCGTCCGTGCAAGATG 62.071 63.158 0.00 0.72 39.32 2.90
3281 3426 4.968971 TTCTTTTTCTAGACCGTTCCCT 57.031 40.909 0.00 0.00 0.00 4.20
3282 3427 4.532314 TCTTTTTCTAGACCGTTCCCTC 57.468 45.455 0.00 0.00 0.00 4.30
3292 3437 1.145803 CCGTTCCCTCAACTTCGTTC 58.854 55.000 0.00 0.00 32.09 3.95
3299 3444 1.673033 CCTCAACTTCGTTCATCGGCT 60.673 52.381 0.00 0.00 40.32 5.52
3307 3452 1.663643 TCGTTCATCGGCTGCATTAAC 59.336 47.619 0.50 0.00 40.32 2.01
3311 3456 2.016318 TCATCGGCTGCATTAACAAGG 58.984 47.619 0.50 0.00 0.00 3.61
3313 3458 1.448985 TCGGCTGCATTAACAAGGTC 58.551 50.000 0.50 0.00 0.00 3.85
3314 3459 1.164411 CGGCTGCATTAACAAGGTCA 58.836 50.000 0.50 0.00 0.00 4.02
3316 3461 2.942376 CGGCTGCATTAACAAGGTCATA 59.058 45.455 0.50 0.00 0.00 2.15
3320 3465 5.750067 GGCTGCATTAACAAGGTCATATTTG 59.250 40.000 0.50 0.00 0.00 2.32
3322 3467 6.627953 GCTGCATTAACAAGGTCATATTTGGT 60.628 38.462 0.00 0.00 0.00 3.67
3323 3468 7.238486 TGCATTAACAAGGTCATATTTGGTT 57.762 32.000 0.00 0.00 0.00 3.67
3324 3469 7.319646 TGCATTAACAAGGTCATATTTGGTTC 58.680 34.615 0.00 0.00 0.00 3.62
3327 3472 8.670135 CATTAACAAGGTCATATTTGGTTCGTA 58.330 33.333 0.00 0.00 0.00 3.43
3330 3475 6.235664 ACAAGGTCATATTTGGTTCGTAAGT 58.764 36.000 0.00 0.00 39.48 2.24
3331 3476 6.713450 ACAAGGTCATATTTGGTTCGTAAGTT 59.287 34.615 0.00 0.00 39.48 2.66
3332 3477 7.229907 ACAAGGTCATATTTGGTTCGTAAGTTT 59.770 33.333 0.00 0.00 39.48 2.66
3333 3478 7.754851 AGGTCATATTTGGTTCGTAAGTTTT 57.245 32.000 0.00 0.00 39.48 2.43
3334 3479 8.851541 AGGTCATATTTGGTTCGTAAGTTTTA 57.148 30.769 0.00 0.00 39.48 1.52
3336 3481 9.550811 GGTCATATTTGGTTCGTAAGTTTTAAG 57.449 33.333 0.00 0.00 39.48 1.85
3371 3516 8.738645 AATCCCAACTCATAAGTCATAAGTTC 57.261 34.615 0.00 0.00 33.48 3.01
3372 3517 7.252612 TCCCAACTCATAAGTCATAAGTTCA 57.747 36.000 0.00 0.00 33.48 3.18
3373 3518 7.861629 TCCCAACTCATAAGTCATAAGTTCAT 58.138 34.615 0.00 0.00 33.48 2.57
3374 3519 8.988060 TCCCAACTCATAAGTCATAAGTTCATA 58.012 33.333 0.00 0.00 33.48 2.15
3375 3520 9.613428 CCCAACTCATAAGTCATAAGTTCATAA 57.387 33.333 0.00 0.00 33.48 1.90
3394 3539 9.612620 GTTCATAAAAAGTCTCTATGTGTTTGG 57.387 33.333 0.00 0.00 0.00 3.28
3395 3540 8.918202 TCATAAAAAGTCTCTATGTGTTTGGT 57.082 30.769 0.00 0.00 0.00 3.67
3396 3541 9.349713 TCATAAAAAGTCTCTATGTGTTTGGTT 57.650 29.630 0.00 0.00 0.00 3.67
3397 3542 9.612620 CATAAAAAGTCTCTATGTGTTTGGTTC 57.387 33.333 0.00 0.00 0.00 3.62
3398 3543 6.635030 AAAAGTCTCTATGTGTTTGGTTCC 57.365 37.500 0.00 0.00 0.00 3.62
3399 3544 5.568620 AAGTCTCTATGTGTTTGGTTCCT 57.431 39.130 0.00 0.00 0.00 3.36
3400 3545 5.153950 AGTCTCTATGTGTTTGGTTCCTC 57.846 43.478 0.00 0.00 0.00 3.71
3401 3546 3.927142 GTCTCTATGTGTTTGGTTCCTCG 59.073 47.826 0.00 0.00 0.00 4.63
3402 3547 3.830178 TCTCTATGTGTTTGGTTCCTCGA 59.170 43.478 0.00 0.00 0.00 4.04
3403 3548 4.282449 TCTCTATGTGTTTGGTTCCTCGAA 59.718 41.667 0.00 0.00 0.00 3.71
3404 3549 5.046591 TCTCTATGTGTTTGGTTCCTCGAAT 60.047 40.000 0.00 0.00 0.00 3.34
3405 3550 5.556915 TCTATGTGTTTGGTTCCTCGAATT 58.443 37.500 0.00 0.00 0.00 2.17
3406 3551 6.001460 TCTATGTGTTTGGTTCCTCGAATTT 58.999 36.000 0.00 0.00 0.00 1.82
3407 3552 7.162761 TCTATGTGTTTGGTTCCTCGAATTTA 58.837 34.615 0.00 0.00 0.00 1.40
3408 3553 6.642707 ATGTGTTTGGTTCCTCGAATTTAA 57.357 33.333 0.00 0.00 0.00 1.52
3409 3554 5.823353 TGTGTTTGGTTCCTCGAATTTAAC 58.177 37.500 0.00 0.00 0.00 2.01
3410 3555 5.357314 TGTGTTTGGTTCCTCGAATTTAACA 59.643 36.000 0.00 0.00 0.00 2.41
3411 3556 6.039941 TGTGTTTGGTTCCTCGAATTTAACAT 59.960 34.615 0.00 0.00 0.00 2.71
3412 3557 6.362283 GTGTTTGGTTCCTCGAATTTAACATG 59.638 38.462 0.00 0.00 0.00 3.21
3413 3558 5.637006 TTGGTTCCTCGAATTTAACATGG 57.363 39.130 0.00 0.00 0.00 3.66
3414 3559 4.912586 TGGTTCCTCGAATTTAACATGGA 58.087 39.130 0.00 0.00 0.00 3.41
3415 3560 4.698304 TGGTTCCTCGAATTTAACATGGAC 59.302 41.667 0.00 0.00 0.00 4.02
3416 3561 4.941873 GGTTCCTCGAATTTAACATGGACT 59.058 41.667 0.00 0.00 0.00 3.85
3417 3562 6.110707 GGTTCCTCGAATTTAACATGGACTA 58.889 40.000 0.00 0.00 0.00 2.59
3418 3563 6.596497 GGTTCCTCGAATTTAACATGGACTAA 59.404 38.462 0.00 0.00 0.00 2.24
3419 3564 7.120138 GGTTCCTCGAATTTAACATGGACTAAA 59.880 37.037 0.00 0.00 0.00 1.85
3420 3565 8.508875 GTTCCTCGAATTTAACATGGACTAAAA 58.491 33.333 0.00 0.00 0.00 1.52
3421 3566 8.263940 TCCTCGAATTTAACATGGACTAAAAG 57.736 34.615 0.00 0.00 0.00 2.27
3422 3567 8.098286 TCCTCGAATTTAACATGGACTAAAAGA 58.902 33.333 0.00 0.61 0.00 2.52
3423 3568 8.893727 CCTCGAATTTAACATGGACTAAAAGAT 58.106 33.333 0.00 0.00 0.00 2.40
3462 3607 8.855804 ATAAGTCCCTATAAGTCCTTTCTTGA 57.144 34.615 0.00 0.00 0.00 3.02
3463 3608 6.800072 AGTCCCTATAAGTCCTTTCTTGAG 57.200 41.667 0.00 0.00 0.00 3.02
3464 3609 6.503944 AGTCCCTATAAGTCCTTTCTTGAGA 58.496 40.000 0.00 0.00 0.00 3.27
3465 3610 6.609616 AGTCCCTATAAGTCCTTTCTTGAGAG 59.390 42.308 0.00 0.00 0.00 3.20
3466 3611 6.381707 GTCCCTATAAGTCCTTTCTTGAGAGT 59.618 42.308 0.00 0.00 0.00 3.24
3467 3612 6.608002 TCCCTATAAGTCCTTTCTTGAGAGTC 59.392 42.308 0.00 0.00 0.00 3.36
3468 3613 6.609616 CCCTATAAGTCCTTTCTTGAGAGTCT 59.390 42.308 0.00 0.00 0.00 3.24
3469 3614 7.125053 CCCTATAAGTCCTTTCTTGAGAGTCTT 59.875 40.741 0.00 0.00 0.00 3.01
3470 3615 9.191479 CCTATAAGTCCTTTCTTGAGAGTCTTA 57.809 37.037 0.00 0.00 0.00 2.10
3499 3644 3.236632 GGCTCAAATGCCCACTTTAAG 57.763 47.619 0.00 0.00 46.82 1.85
3500 3645 2.562738 GGCTCAAATGCCCACTTTAAGT 59.437 45.455 0.00 0.00 46.82 2.24
3501 3646 3.367395 GGCTCAAATGCCCACTTTAAGTC 60.367 47.826 0.00 0.00 46.82 3.01
3502 3647 3.507622 GCTCAAATGCCCACTTTAAGTCT 59.492 43.478 0.00 0.00 0.00 3.24
3503 3648 4.021981 GCTCAAATGCCCACTTTAAGTCTT 60.022 41.667 0.00 0.00 0.00 3.01
3504 3649 5.509670 GCTCAAATGCCCACTTTAAGTCTTT 60.510 40.000 0.00 0.00 0.00 2.52
3505 3650 6.294508 GCTCAAATGCCCACTTTAAGTCTTTA 60.295 38.462 0.00 0.00 0.00 1.85
3506 3651 7.577616 GCTCAAATGCCCACTTTAAGTCTTTAT 60.578 37.037 0.00 0.00 0.00 1.40
3507 3652 8.871629 TCAAATGCCCACTTTAAGTCTTTATA 57.128 30.769 0.00 0.00 0.00 0.98
3508 3653 9.303116 TCAAATGCCCACTTTAAGTCTTTATAA 57.697 29.630 0.00 0.00 0.00 0.98
3509 3654 9.573133 CAAATGCCCACTTTAAGTCTTTATAAG 57.427 33.333 0.00 0.00 0.00 1.73
3510 3655 8.879427 AATGCCCACTTTAAGTCTTTATAAGT 57.121 30.769 0.00 0.00 0.00 2.24
3511 3656 8.879427 ATGCCCACTTTAAGTCTTTATAAGTT 57.121 30.769 0.00 0.00 0.00 2.66
3512 3657 8.331730 TGCCCACTTTAAGTCTTTATAAGTTC 57.668 34.615 0.00 0.00 0.00 3.01
3513 3658 7.392393 TGCCCACTTTAAGTCTTTATAAGTTCC 59.608 37.037 0.00 0.00 0.00 3.62
3514 3659 7.610692 GCCCACTTTAAGTCTTTATAAGTTCCT 59.389 37.037 0.00 0.00 0.00 3.36
3515 3660 9.163899 CCCACTTTAAGTCTTTATAAGTTCCTC 57.836 37.037 0.00 0.00 0.00 3.71
3516 3661 9.163899 CCACTTTAAGTCTTTATAAGTTCCTCC 57.836 37.037 0.00 0.00 0.00 4.30
3517 3662 9.945904 CACTTTAAGTCTTTATAAGTTCCTCCT 57.054 33.333 0.00 0.00 0.00 3.69
3518 3663 9.945904 ACTTTAAGTCTTTATAAGTTCCTCCTG 57.054 33.333 0.00 0.00 0.00 3.86
3519 3664 9.945904 CTTTAAGTCTTTATAAGTTCCTCCTGT 57.054 33.333 0.00 0.00 0.00 4.00
3522 3667 8.622948 AAGTCTTTATAAGTTCCTCCTGTTTG 57.377 34.615 0.00 0.00 0.00 2.93
3523 3668 7.168905 AGTCTTTATAAGTTCCTCCTGTTTGG 58.831 38.462 0.00 0.00 37.10 3.28
3524 3669 6.940867 GTCTTTATAAGTTCCTCCTGTTTGGT 59.059 38.462 0.00 0.00 37.07 3.67
3525 3670 7.447545 GTCTTTATAAGTTCCTCCTGTTTGGTT 59.552 37.037 0.00 0.00 37.07 3.67
3526 3671 8.002459 TCTTTATAAGTTCCTCCTGTTTGGTTT 58.998 33.333 0.00 0.00 37.07 3.27
3527 3672 9.292195 CTTTATAAGTTCCTCCTGTTTGGTTTA 57.708 33.333 0.00 0.00 37.07 2.01
3528 3673 8.857694 TTATAAGTTCCTCCTGTTTGGTTTAG 57.142 34.615 0.00 0.00 37.07 1.85
3529 3674 5.382664 AAGTTCCTCCTGTTTGGTTTAGA 57.617 39.130 0.00 0.00 37.07 2.10
3530 3675 5.584551 AGTTCCTCCTGTTTGGTTTAGAT 57.415 39.130 0.00 0.00 37.07 1.98
3531 3676 5.316987 AGTTCCTCCTGTTTGGTTTAGATG 58.683 41.667 0.00 0.00 37.07 2.90
3532 3677 4.301072 TCCTCCTGTTTGGTTTAGATGG 57.699 45.455 0.00 0.00 37.07 3.51
3533 3678 3.010138 TCCTCCTGTTTGGTTTAGATGGG 59.990 47.826 0.00 0.00 37.07 4.00
3534 3679 3.010138 CCTCCTGTTTGGTTTAGATGGGA 59.990 47.826 0.00 0.00 37.07 4.37
3535 3680 4.010349 CTCCTGTTTGGTTTAGATGGGAC 58.990 47.826 0.00 0.00 37.07 4.46
3536 3681 3.655777 TCCTGTTTGGTTTAGATGGGACT 59.344 43.478 0.00 0.00 37.07 3.85
3537 3682 4.105697 TCCTGTTTGGTTTAGATGGGACTT 59.894 41.667 0.00 0.00 37.07 3.01
3538 3683 5.311121 TCCTGTTTGGTTTAGATGGGACTTA 59.689 40.000 0.00 0.00 37.07 2.24
3539 3684 6.011981 TCCTGTTTGGTTTAGATGGGACTTAT 60.012 38.462 0.00 0.00 37.07 1.73
3540 3685 7.183112 TCCTGTTTGGTTTAGATGGGACTTATA 59.817 37.037 0.00 0.00 37.07 0.98
3541 3686 7.499232 CCTGTTTGGTTTAGATGGGACTTATAG 59.501 40.741 0.00 0.00 0.00 1.31
3542 3687 8.153221 TGTTTGGTTTAGATGGGACTTATAGA 57.847 34.615 0.00 0.00 0.00 1.98
3543 3688 8.778059 TGTTTGGTTTAGATGGGACTTATAGAT 58.222 33.333 0.00 0.00 0.00 1.98
3546 3691 9.670442 TTGGTTTAGATGGGACTTATAGATACT 57.330 33.333 0.00 0.00 0.00 2.12
3547 3692 9.670442 TGGTTTAGATGGGACTTATAGATACTT 57.330 33.333 0.00 0.00 0.00 2.24
3588 3733 9.758651 ATCAATAAGTCCTTAAAAACAAACACC 57.241 29.630 0.00 0.00 0.00 4.16
3589 3734 8.198778 TCAATAAGTCCTTAAAAACAAACACCC 58.801 33.333 0.00 0.00 0.00 4.61
3590 3735 7.907841 ATAAGTCCTTAAAAACAAACACCCT 57.092 32.000 0.00 0.00 0.00 4.34
3591 3736 5.847111 AGTCCTTAAAAACAAACACCCTC 57.153 39.130 0.00 0.00 0.00 4.30
3678 3833 4.020128 GGGACCATCGGCTCTAAATCTAAT 60.020 45.833 0.00 0.00 0.00 1.73
3681 3836 4.348168 ACCATCGGCTCTAAATCTAATGGT 59.652 41.667 0.00 0.00 40.50 3.55
3693 3848 1.429148 CTAATGGTTGCGCCTCCGTC 61.429 60.000 4.18 0.00 38.35 4.79
3694 3849 1.895020 TAATGGTTGCGCCTCCGTCT 61.895 55.000 4.18 3.07 38.35 4.18
3695 3850 3.665675 ATGGTTGCGCCTCCGTCTC 62.666 63.158 4.18 0.00 38.35 3.36
3697 3852 4.070552 GTTGCGCCTCCGTCTCCT 62.071 66.667 4.18 0.00 36.67 3.69
3698 3853 4.069232 TTGCGCCTCCGTCTCCTG 62.069 66.667 4.18 0.00 36.67 3.86
3701 3856 3.842923 CGCCTCCGTCTCCTGCAT 61.843 66.667 0.00 0.00 0.00 3.96
3702 3857 2.107953 GCCTCCGTCTCCTGCATC 59.892 66.667 0.00 0.00 0.00 3.91
3703 3858 2.818132 CCTCCGTCTCCTGCATCC 59.182 66.667 0.00 0.00 0.00 3.51
3704 3859 2.060383 CCTCCGTCTCCTGCATCCA 61.060 63.158 0.00 0.00 0.00 3.41
3705 3860 1.440893 CTCCGTCTCCTGCATCCAG 59.559 63.158 0.00 0.00 38.85 3.86
3706 3861 2.202987 CCGTCTCCTGCATCCAGC 60.203 66.667 0.00 0.00 45.96 4.85
3707 3862 2.202987 CGTCTCCTGCATCCAGCC 60.203 66.667 0.00 0.00 44.83 4.85
3708 3863 2.191641 GTCTCCTGCATCCAGCCC 59.808 66.667 0.00 0.00 44.83 5.19
3709 3864 3.473647 TCTCCTGCATCCAGCCCG 61.474 66.667 0.00 0.00 44.83 6.13
3710 3865 3.473647 CTCCTGCATCCAGCCCGA 61.474 66.667 0.00 0.00 44.83 5.14
3711 3866 2.769621 TCCTGCATCCAGCCCGAT 60.770 61.111 0.00 0.00 44.83 4.18
3712 3867 2.281345 CCTGCATCCAGCCCGATC 60.281 66.667 0.00 0.00 44.83 3.69
3713 3868 2.281345 CTGCATCCAGCCCGATCC 60.281 66.667 0.00 0.00 44.83 3.36
3714 3869 3.089217 TGCATCCAGCCCGATCCA 61.089 61.111 0.00 0.00 44.83 3.41
3715 3870 2.281345 GCATCCAGCCCGATCCAG 60.281 66.667 0.00 0.00 37.23 3.86
3716 3871 2.281345 CATCCAGCCCGATCCAGC 60.281 66.667 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 58 8.342634 CCACGACTTTTCTCTATTCTTTTTGAA 58.657 33.333 0.00 0.00 39.24 2.69
168 176 6.954684 TGGCCCTATGAAACTAACCATTTTTA 59.045 34.615 0.00 0.00 0.00 1.52
169 177 5.782845 TGGCCCTATGAAACTAACCATTTTT 59.217 36.000 0.00 0.00 0.00 1.94
185 193 2.011467 TCCCTAGCTAGATGGCCCTAT 58.989 52.381 22.70 0.00 0.00 2.57
271 279 0.671796 CGTGCGTATCCTGGGTATGA 59.328 55.000 10.42 0.00 0.00 2.15
281 289 0.934496 TTGCTTATGCCGTGCGTATC 59.066 50.000 0.00 0.00 38.71 2.24
301 309 6.694447 TCGGTTACAAATAGAGTATATGCCC 58.306 40.000 0.00 0.00 0.00 5.36
304 312 8.425491 CGCTTTCGGTTACAAATAGAGTATATG 58.575 37.037 0.00 0.00 0.00 1.78
305 313 7.115947 GCGCTTTCGGTTACAAATAGAGTATAT 59.884 37.037 0.00 0.00 35.95 0.86
306 314 6.418819 GCGCTTTCGGTTACAAATAGAGTATA 59.581 38.462 0.00 0.00 35.95 1.47
307 315 5.233689 GCGCTTTCGGTTACAAATAGAGTAT 59.766 40.000 0.00 0.00 35.95 2.12
308 316 4.563976 GCGCTTTCGGTTACAAATAGAGTA 59.436 41.667 0.00 0.00 35.95 2.59
309 317 3.370061 GCGCTTTCGGTTACAAATAGAGT 59.630 43.478 0.00 0.00 35.95 3.24
310 318 3.242316 GGCGCTTTCGGTTACAAATAGAG 60.242 47.826 7.64 0.00 35.95 2.43
311 319 2.674357 GGCGCTTTCGGTTACAAATAGA 59.326 45.455 7.64 0.00 35.95 1.98
312 320 2.223180 GGGCGCTTTCGGTTACAAATAG 60.223 50.000 7.64 0.00 35.95 1.73
355 363 2.067766 TGGAAATACCAACGTACGTGC 58.932 47.619 23.57 1.94 46.75 5.34
374 382 6.211587 TGCATATTTCCAGATCCTTTTGTG 57.788 37.500 0.00 0.00 0.00 3.33
375 383 6.684613 GCATGCATATTTCCAGATCCTTTTGT 60.685 38.462 14.21 0.00 0.00 2.83
400 408 2.514592 ATTCCCGCGTCAGCCATG 60.515 61.111 4.92 0.00 41.18 3.66
401 409 2.514592 CATTCCCGCGTCAGCCAT 60.515 61.111 4.92 0.00 41.18 4.40
402 410 3.664025 CTCATTCCCGCGTCAGCCA 62.664 63.158 4.92 0.00 41.18 4.75
403 411 2.852495 TTCTCATTCCCGCGTCAGCC 62.852 60.000 4.92 0.00 41.18 4.85
435 443 8.043710 GTCCAGATTCTCATTAAGGAAGAAAGA 58.956 37.037 6.25 0.00 0.00 2.52
437 445 7.922382 AGTCCAGATTCTCATTAAGGAAGAAA 58.078 34.615 6.25 0.00 0.00 2.52
440 448 9.672673 TTTAAGTCCAGATTCTCATTAAGGAAG 57.327 33.333 0.00 0.00 0.00 3.46
441 449 9.449719 GTTTAAGTCCAGATTCTCATTAAGGAA 57.550 33.333 0.00 0.00 0.00 3.36
442 450 8.602424 TGTTTAAGTCCAGATTCTCATTAAGGA 58.398 33.333 0.00 0.00 0.00 3.36
443 451 8.792830 TGTTTAAGTCCAGATTCTCATTAAGG 57.207 34.615 0.00 0.00 0.00 2.69
475 517 5.356751 TGCTACCTTAATTACAATGCCACTG 59.643 40.000 0.00 0.00 0.00 3.66
477 519 5.588648 TCTGCTACCTTAATTACAATGCCAC 59.411 40.000 0.00 0.00 0.00 5.01
480 522 7.553881 TTCTCTGCTACCTTAATTACAATGC 57.446 36.000 0.00 0.00 0.00 3.56
485 527 6.199342 CGAGCTTTCTCTGCTACCTTAATTAC 59.801 42.308 0.00 0.00 41.30 1.89
506 554 2.130395 TCAGATTGATTGATCGCGAGC 58.870 47.619 19.12 19.12 0.00 5.03
510 558 7.025963 GGGAATATTTCAGATTGATTGATCGC 58.974 38.462 0.00 0.00 0.00 4.58
512 560 9.293404 TCAGGGAATATTTCAGATTGATTGATC 57.707 33.333 0.00 0.00 0.00 2.92
524 580 3.112263 AGACCGGTCAGGGAATATTTCA 58.888 45.455 35.00 0.00 46.96 2.69
570 626 1.531423 GGCCGCAATGATCATGATCT 58.469 50.000 30.65 16.80 38.60 2.75
616 678 0.854062 TCGTTTTCACTTGCGTACGG 59.146 50.000 18.39 2.64 0.00 4.02
640 702 0.840617 GTCCCATTCTTCTCCTCCCC 59.159 60.000 0.00 0.00 0.00 4.81
641 703 0.466124 CGTCCCATTCTTCTCCTCCC 59.534 60.000 0.00 0.00 0.00 4.30
643 705 1.202475 GCTCGTCCCATTCTTCTCCTC 60.202 57.143 0.00 0.00 0.00 3.71
748 814 4.057428 CGATCGATCCCTCCCGGC 62.057 72.222 19.51 0.00 0.00 6.13
749 815 3.374402 CCGATCGATCCCTCCCGG 61.374 72.222 18.66 12.75 0.00 5.73
750 816 2.597805 ACCGATCGATCCCTCCCG 60.598 66.667 18.66 7.36 0.00 5.14
751 817 1.530891 TCACCGATCGATCCCTCCC 60.531 63.158 18.66 0.00 0.00 4.30
754 820 3.857764 GGTCACCGATCGATCCCT 58.142 61.111 18.66 1.69 0.00 4.20
765 831 1.895231 GTGGGTTTGACCGGTCACC 60.895 63.158 36.40 31.69 39.83 4.02
766 832 1.895231 GGTGGGTTTGACCGGTCAC 60.895 63.158 36.40 24.99 39.83 3.67
767 833 0.763604 TAGGTGGGTTTGACCGGTCA 60.764 55.000 33.23 33.23 39.83 4.02
768 834 0.321034 GTAGGTGGGTTTGACCGGTC 60.321 60.000 28.17 28.17 39.83 4.79
769 835 0.765519 AGTAGGTGGGTTTGACCGGT 60.766 55.000 6.92 6.92 39.83 5.28
814 880 1.148867 GAGGAGATGGGGAGGAGATGA 59.851 57.143 0.00 0.00 0.00 2.92
815 881 1.149711 AGAGGAGATGGGGAGGAGATG 59.850 57.143 0.00 0.00 0.00 2.90
816 882 1.556499 AGAGGAGATGGGGAGGAGAT 58.444 55.000 0.00 0.00 0.00 2.75
820 886 5.663556 GGTTTATATAGAGGAGATGGGGAGG 59.336 48.000 0.00 0.00 0.00 4.30
824 890 5.189934 GGTGGGTTTATATAGAGGAGATGGG 59.810 48.000 0.00 0.00 0.00 4.00
825 891 6.026186 AGGTGGGTTTATATAGAGGAGATGG 58.974 44.000 0.00 0.00 0.00 3.51
827 895 7.776745 TGTAGGTGGGTTTATATAGAGGAGAT 58.223 38.462 0.00 0.00 0.00 2.75
830 898 7.453752 GTGATGTAGGTGGGTTTATATAGAGGA 59.546 40.741 0.00 0.00 0.00 3.71
846 914 2.093658 GGTTCGATGGTGTGATGTAGGT 60.094 50.000 0.00 0.00 0.00 3.08
847 915 2.093711 TGGTTCGATGGTGTGATGTAGG 60.094 50.000 0.00 0.00 0.00 3.18
849 917 3.450817 AGATGGTTCGATGGTGTGATGTA 59.549 43.478 0.00 0.00 0.00 2.29
850 918 2.237143 AGATGGTTCGATGGTGTGATGT 59.763 45.455 0.00 0.00 0.00 3.06
851 919 2.868583 GAGATGGTTCGATGGTGTGATG 59.131 50.000 0.00 0.00 0.00 3.07
852 920 2.768527 AGAGATGGTTCGATGGTGTGAT 59.231 45.455 0.00 0.00 0.00 3.06
853 921 2.166459 GAGAGATGGTTCGATGGTGTGA 59.834 50.000 0.00 0.00 0.00 3.58
854 922 2.094026 TGAGAGATGGTTCGATGGTGTG 60.094 50.000 0.00 0.00 0.00 3.82
907 983 6.757478 CGATGAAGATGATGGATAGGATTCAG 59.243 42.308 0.00 0.00 0.00 3.02
913 989 3.055602 TGGCGATGAAGATGATGGATAGG 60.056 47.826 0.00 0.00 0.00 2.57
915 991 3.618263 GCTGGCGATGAAGATGATGGATA 60.618 47.826 0.00 0.00 0.00 2.59
916 992 2.874861 GCTGGCGATGAAGATGATGGAT 60.875 50.000 0.00 0.00 0.00 3.41
918 994 0.873054 GCTGGCGATGAAGATGATGG 59.127 55.000 0.00 0.00 0.00 3.51
919 995 1.880271 AGCTGGCGATGAAGATGATG 58.120 50.000 0.00 0.00 0.00 3.07
920 996 2.634815 AAGCTGGCGATGAAGATGAT 57.365 45.000 0.00 0.00 0.00 2.45
921 997 3.541996 TTAAGCTGGCGATGAAGATGA 57.458 42.857 0.00 0.00 0.00 2.92
924 1000 4.517285 AGAAATTAAGCTGGCGATGAAGA 58.483 39.130 0.00 0.00 0.00 2.87
925 1001 4.551603 CGAGAAATTAAGCTGGCGATGAAG 60.552 45.833 0.00 0.00 0.00 3.02
926 1002 3.309682 CGAGAAATTAAGCTGGCGATGAA 59.690 43.478 0.00 0.00 0.00 2.57
927 1003 2.866156 CGAGAAATTAAGCTGGCGATGA 59.134 45.455 0.00 0.00 0.00 2.92
928 1004 2.866156 TCGAGAAATTAAGCTGGCGATG 59.134 45.455 0.00 0.00 0.00 3.84
931 1007 2.097202 CGATCGAGAAATTAAGCTGGCG 60.097 50.000 10.26 0.00 0.00 5.69
936 1012 5.484958 CACTGTTCGATCGAGAAATTAAGC 58.515 41.667 18.54 0.00 0.00 3.09
944 1020 0.881796 AGTGCACTGTTCGATCGAGA 59.118 50.000 20.97 8.25 0.00 4.04
947 1023 2.264109 ACTAGTGCACTGTTCGATCG 57.736 50.000 29.57 9.36 0.00 3.69
948 1024 3.099362 CGTACTAGTGCACTGTTCGATC 58.901 50.000 29.57 11.41 0.00 3.69
949 1025 2.731341 GCGTACTAGTGCACTGTTCGAT 60.731 50.000 31.62 16.60 0.00 3.59
953 1029 1.935300 GCTGCGTACTAGTGCACTGTT 60.935 52.381 29.57 17.46 35.90 3.16
954 1030 0.388649 GCTGCGTACTAGTGCACTGT 60.389 55.000 29.57 24.21 35.90 3.55
955 1031 0.388520 TGCTGCGTACTAGTGCACTG 60.389 55.000 29.57 20.07 35.90 3.66
956 1032 1.964448 TGCTGCGTACTAGTGCACT 59.036 52.632 25.12 25.12 35.90 4.40
957 1033 2.070861 GTGCTGCGTACTAGTGCAC 58.929 57.895 16.60 16.60 45.23 4.57
958 1034 1.443702 CGTGCTGCGTACTAGTGCA 60.444 57.895 11.70 9.52 39.13 4.57
959 1035 3.374330 CGTGCTGCGTACTAGTGC 58.626 61.111 5.39 2.60 35.54 4.40
971 1047 2.290122 CTAGCTAGCTGCCACGTGCT 62.290 60.000 27.68 6.70 44.23 4.40
972 1048 1.880340 CTAGCTAGCTGCCACGTGC 60.880 63.158 27.68 6.53 44.23 5.34
973 1049 1.880340 GCTAGCTAGCTGCCACGTG 60.880 63.158 33.71 9.08 45.62 4.49
974 1050 2.496817 GCTAGCTAGCTGCCACGT 59.503 61.111 33.71 1.05 45.62 4.49
983 1059 2.554462 TCCATTGACGCTAGCTAGCTAG 59.446 50.000 37.09 37.09 46.85 3.42
984 1060 2.554462 CTCCATTGACGCTAGCTAGCTA 59.446 50.000 36.02 22.85 46.85 3.32
985 1061 1.339610 CTCCATTGACGCTAGCTAGCT 59.660 52.381 36.02 25.39 46.85 3.32
986 1062 1.777101 CTCCATTGACGCTAGCTAGC 58.223 55.000 31.88 31.88 45.62 3.42
987 1063 1.339610 AGCTCCATTGACGCTAGCTAG 59.660 52.381 16.84 16.84 41.56 3.42
988 1064 1.338337 GAGCTCCATTGACGCTAGCTA 59.662 52.381 13.93 0.00 43.31 3.32
989 1065 0.103937 GAGCTCCATTGACGCTAGCT 59.896 55.000 13.93 0.00 45.82 3.32
990 1066 1.211818 CGAGCTCCATTGACGCTAGC 61.212 60.000 8.47 4.06 33.47 3.42
996 1072 3.567797 GCCGCGAGCTCCATTGAC 61.568 66.667 8.23 0.00 38.99 3.18
1066 1154 1.139095 CCGCGTGGAGGAAGTAGAC 59.861 63.158 10.20 0.00 37.49 2.59
1281 1369 2.203153 AACACCTTGCCGAACGCT 60.203 55.556 0.00 0.00 38.78 5.07
1528 1616 5.544136 TCGCTACACGTGTAAGTATAACA 57.456 39.130 27.16 5.88 44.19 2.41
1531 1619 5.525012 ACAGATCGCTACACGTGTAAGTATA 59.475 40.000 27.16 12.74 44.19 1.47
1532 1620 4.334759 ACAGATCGCTACACGTGTAAGTAT 59.665 41.667 27.16 19.44 44.19 2.12
1534 1622 2.486982 ACAGATCGCTACACGTGTAAGT 59.513 45.455 27.16 14.14 44.19 2.24
1590 1701 1.827315 TAAAGTCAGTGCGTGCGTGC 61.827 55.000 0.00 0.00 0.00 5.34
1598 1709 6.147821 AGTTCACACATATGTAAAGTCAGTGC 59.852 38.462 8.32 0.00 36.72 4.40
1599 1710 7.513132 CAGTTCACACATATGTAAAGTCAGTG 58.487 38.462 8.32 10.55 36.72 3.66
1600 1711 6.147821 GCAGTTCACACATATGTAAAGTCAGT 59.852 38.462 8.32 0.00 36.72 3.41
1602 1713 5.994668 TGCAGTTCACACATATGTAAAGTCA 59.005 36.000 8.32 4.95 36.72 3.41
1611 1727 3.701205 TGTCCTGCAGTTCACACATAT 57.299 42.857 13.81 0.00 0.00 1.78
1616 1732 2.703416 GATCATGTCCTGCAGTTCACA 58.297 47.619 13.81 12.48 0.00 3.58
1640 1756 1.739338 GCCGTCGTCTCCTCCATGAT 61.739 60.000 0.00 0.00 0.00 2.45
1642 1758 2.105128 GCCGTCGTCTCCTCCATG 59.895 66.667 0.00 0.00 0.00 3.66
1717 1833 1.384989 CCCGCTCCACATCTACGACT 61.385 60.000 0.00 0.00 0.00 4.18
1720 1836 2.417516 CCCCGCTCCACATCTACG 59.582 66.667 0.00 0.00 0.00 3.51
1805 1921 0.106708 TGCAGCTTCTCGAACACCTT 59.893 50.000 0.00 0.00 0.00 3.50
1806 1922 0.320247 CTGCAGCTTCTCGAACACCT 60.320 55.000 0.00 0.00 0.00 4.00
2086 2205 2.936912 GCACTCGTCCACCAGCTCT 61.937 63.158 0.00 0.00 0.00 4.09
2152 2271 1.523258 GAGCATGAGCAGCGTCCAT 60.523 57.895 0.00 0.00 45.49 3.41
2503 2622 1.451387 GAACGGCAGGTACCCCATG 60.451 63.158 8.74 1.17 0.00 3.66
2560 2679 2.041197 ACCCGGTACTCCATCCCC 60.041 66.667 0.00 0.00 0.00 4.81
2751 2873 2.424842 TAATCATCATGCCCCGGCCC 62.425 60.000 2.62 0.00 41.09 5.80
2752 2874 0.323725 ATAATCATCATGCCCCGGCC 60.324 55.000 2.62 0.00 41.09 6.13
2753 2875 2.418368 TATAATCATCATGCCCCGGC 57.582 50.000 0.00 0.00 42.35 6.13
2791 2913 9.494479 CTTGTATATGTTGCTTGTCTACAATTG 57.506 33.333 3.24 3.24 34.33 2.32
2814 2936 5.056480 TCCATATATTCCGTTGAGCACTTG 58.944 41.667 0.00 0.00 0.00 3.16
2835 2957 5.391312 AGTATTTTGCAATGGAGTGTTCC 57.609 39.130 0.00 0.00 44.31 3.62
2839 2961 5.771469 TGTGAAGTATTTTGCAATGGAGTG 58.229 37.500 0.00 0.00 0.00 3.51
2840 2962 6.594788 ATGTGAAGTATTTTGCAATGGAGT 57.405 33.333 0.00 0.00 0.00 3.85
2947 3074 4.313277 TGCATGCATACTAGTCTCACTC 57.687 45.455 18.46 0.00 0.00 3.51
2957 3084 3.021695 ACAGCTCATTTGCATGCATACT 58.978 40.909 23.37 7.19 34.99 2.12
2958 3085 3.113322 CACAGCTCATTTGCATGCATAC 58.887 45.455 23.37 4.77 34.99 2.39
2970 3100 1.470051 TTCATGCATGCACAGCTCAT 58.530 45.000 25.37 1.29 0.00 2.90
3131 3269 0.941463 GCGTCTATCCTCGCCATGTG 60.941 60.000 0.00 0.00 45.54 3.21
3207 3347 4.465512 GCGCACCATCTTGCACGG 62.466 66.667 0.30 0.00 43.15 4.94
3227 3367 5.278463 GCAGAAATGACTTCCAAGCTTACAA 60.278 40.000 0.00 0.00 34.21 2.41
3292 3437 1.745087 ACCTTGTTAATGCAGCCGATG 59.255 47.619 0.00 0.00 0.00 3.84
3299 3444 6.849085 ACCAAATATGACCTTGTTAATGCA 57.151 33.333 0.00 0.00 0.00 3.96
3307 3452 6.737254 ACTTACGAACCAAATATGACCTTG 57.263 37.500 0.00 0.00 0.00 3.61
3345 3490 9.832445 GAACTTATGACTTATGAGTTGGGATTA 57.168 33.333 2.38 0.00 43.34 1.75
3346 3491 8.328758 TGAACTTATGACTTATGAGTTGGGATT 58.671 33.333 2.38 0.00 43.34 3.01
3347 3492 7.861629 TGAACTTATGACTTATGAGTTGGGAT 58.138 34.615 2.38 0.00 43.34 3.85
3348 3493 7.252612 TGAACTTATGACTTATGAGTTGGGA 57.747 36.000 2.38 0.00 43.34 4.37
3349 3494 9.613428 TTATGAACTTATGACTTATGAGTTGGG 57.387 33.333 2.38 0.00 43.34 4.12
3368 3513 9.612620 CCAAACACATAGAGACTTTTTATGAAC 57.387 33.333 8.64 0.00 0.00 3.18
3369 3514 9.349713 ACCAAACACATAGAGACTTTTTATGAA 57.650 29.630 8.64 0.00 0.00 2.57
3370 3515 8.918202 ACCAAACACATAGAGACTTTTTATGA 57.082 30.769 8.64 0.00 0.00 2.15
3371 3516 9.612620 GAACCAAACACATAGAGACTTTTTATG 57.387 33.333 0.00 0.00 0.00 1.90
3372 3517 8.793592 GGAACCAAACACATAGAGACTTTTTAT 58.206 33.333 0.00 0.00 0.00 1.40
3373 3518 7.996644 AGGAACCAAACACATAGAGACTTTTTA 59.003 33.333 0.00 0.00 0.00 1.52
3374 3519 6.833933 AGGAACCAAACACATAGAGACTTTTT 59.166 34.615 0.00 0.00 0.00 1.94
3375 3520 6.365520 AGGAACCAAACACATAGAGACTTTT 58.634 36.000 0.00 0.00 0.00 2.27
3376 3521 5.941788 AGGAACCAAACACATAGAGACTTT 58.058 37.500 0.00 0.00 0.00 2.66
3377 3522 5.552178 GAGGAACCAAACACATAGAGACTT 58.448 41.667 0.00 0.00 0.00 3.01
3378 3523 4.322049 CGAGGAACCAAACACATAGAGACT 60.322 45.833 0.00 0.00 0.00 3.24
3379 3524 3.927142 CGAGGAACCAAACACATAGAGAC 59.073 47.826 0.00 0.00 0.00 3.36
3380 3525 3.830178 TCGAGGAACCAAACACATAGAGA 59.170 43.478 0.00 0.00 0.00 3.10
3381 3526 4.188247 TCGAGGAACCAAACACATAGAG 57.812 45.455 0.00 0.00 0.00 2.43
3382 3527 4.610605 TTCGAGGAACCAAACACATAGA 57.389 40.909 0.00 0.00 0.00 1.98
3383 3528 5.880054 AATTCGAGGAACCAAACACATAG 57.120 39.130 0.00 0.00 0.00 2.23
3384 3529 7.228906 TGTTAAATTCGAGGAACCAAACACATA 59.771 33.333 0.00 0.00 0.00 2.29
3385 3530 6.039941 TGTTAAATTCGAGGAACCAAACACAT 59.960 34.615 0.00 0.00 0.00 3.21
3386 3531 5.357314 TGTTAAATTCGAGGAACCAAACACA 59.643 36.000 0.00 0.00 0.00 3.72
3387 3532 5.823353 TGTTAAATTCGAGGAACCAAACAC 58.177 37.500 0.00 0.00 0.00 3.32
3388 3533 6.442952 CATGTTAAATTCGAGGAACCAAACA 58.557 36.000 0.00 0.00 30.24 2.83
3389 3534 5.861787 CCATGTTAAATTCGAGGAACCAAAC 59.138 40.000 0.00 0.00 0.00 2.93
3390 3535 5.770663 TCCATGTTAAATTCGAGGAACCAAA 59.229 36.000 0.00 0.00 0.00 3.28
3391 3536 5.182380 GTCCATGTTAAATTCGAGGAACCAA 59.818 40.000 0.00 0.00 0.00 3.67
3392 3537 4.698304 GTCCATGTTAAATTCGAGGAACCA 59.302 41.667 0.00 0.00 0.00 3.67
3393 3538 4.941873 AGTCCATGTTAAATTCGAGGAACC 59.058 41.667 0.00 0.00 0.00 3.62
3394 3539 7.605410 TTAGTCCATGTTAAATTCGAGGAAC 57.395 36.000 0.00 0.00 0.00 3.62
3395 3540 8.624367 TTTTAGTCCATGTTAAATTCGAGGAA 57.376 30.769 0.00 0.00 0.00 3.36
3396 3541 8.098286 TCTTTTAGTCCATGTTAAATTCGAGGA 58.902 33.333 0.00 0.00 0.00 3.71
3397 3542 8.263940 TCTTTTAGTCCATGTTAAATTCGAGG 57.736 34.615 0.00 0.00 0.00 4.63
3436 3581 9.947189 TCAAGAAAGGACTTATAGGGACTTATA 57.053 33.333 0.00 0.00 41.75 0.98
3437 3582 8.855804 TCAAGAAAGGACTTATAGGGACTTAT 57.144 34.615 0.00 0.00 41.75 1.73
3438 3583 8.120538 TCTCAAGAAAGGACTTATAGGGACTTA 58.879 37.037 0.00 0.00 41.75 2.24
3439 3584 6.960542 TCTCAAGAAAGGACTTATAGGGACTT 59.039 38.462 0.00 0.00 41.75 3.01
3440 3585 6.503944 TCTCAAGAAAGGACTTATAGGGACT 58.496 40.000 0.00 0.00 46.37 3.85
3441 3586 6.381707 ACTCTCAAGAAAGGACTTATAGGGAC 59.618 42.308 0.00 0.00 0.00 4.46
3442 3587 6.503944 ACTCTCAAGAAAGGACTTATAGGGA 58.496 40.000 0.00 0.00 0.00 4.20
3443 3588 6.609616 AGACTCTCAAGAAAGGACTTATAGGG 59.390 42.308 0.00 0.00 0.00 3.53
3444 3589 7.654022 AGACTCTCAAGAAAGGACTTATAGG 57.346 40.000 0.00 0.00 0.00 2.57
3458 3603 9.823647 TGAGCCTTATAAAATAAGACTCTCAAG 57.176 33.333 18.00 0.36 35.80 3.02
3463 3608 9.670719 GCATTTGAGCCTTATAAAATAAGACTC 57.329 33.333 13.13 13.13 35.50 3.36
3480 3625 3.507622 AGACTTAAAGTGGGCATTTGAGC 59.492 43.478 0.00 0.00 29.01 4.26
3481 3626 5.712152 AAGACTTAAAGTGGGCATTTGAG 57.288 39.130 0.00 0.00 31.53 3.02
3482 3627 7.775053 ATAAAGACTTAAAGTGGGCATTTGA 57.225 32.000 0.00 0.00 0.00 2.69
3483 3628 9.573133 CTTATAAAGACTTAAAGTGGGCATTTG 57.427 33.333 0.00 0.00 0.00 2.32
3484 3629 9.309224 ACTTATAAAGACTTAAAGTGGGCATTT 57.691 29.630 8.81 0.00 0.00 2.32
3485 3630 8.879427 ACTTATAAAGACTTAAAGTGGGCATT 57.121 30.769 8.81 0.00 0.00 3.56
3486 3631 8.879427 AACTTATAAAGACTTAAAGTGGGCAT 57.121 30.769 9.87 0.00 31.09 4.40
3487 3632 7.392393 GGAACTTATAAAGACTTAAAGTGGGCA 59.608 37.037 9.87 0.00 31.09 5.36
3488 3633 7.610692 AGGAACTTATAAAGACTTAAAGTGGGC 59.389 37.037 9.87 5.15 27.25 5.36
3489 3634 9.163899 GAGGAACTTATAAAGACTTAAAGTGGG 57.836 37.037 9.87 0.00 41.55 4.61
3490 3635 9.163899 GGAGGAACTTATAAAGACTTAAAGTGG 57.836 37.037 9.87 0.00 41.55 4.00
3491 3636 9.945904 AGGAGGAACTTATAAAGACTTAAAGTG 57.054 33.333 9.87 0.00 41.55 3.16
3492 3637 9.945904 CAGGAGGAACTTATAAAGACTTAAAGT 57.054 33.333 5.22 5.22 41.55 2.66
3493 3638 9.945904 ACAGGAGGAACTTATAAAGACTTAAAG 57.054 33.333 0.00 0.00 41.55 1.85
3496 3641 9.720769 CAAACAGGAGGAACTTATAAAGACTTA 57.279 33.333 0.00 0.00 41.55 2.24
3497 3642 7.665974 CCAAACAGGAGGAACTTATAAAGACTT 59.334 37.037 0.00 0.00 41.55 3.01
3498 3643 7.168905 CCAAACAGGAGGAACTTATAAAGACT 58.831 38.462 0.00 0.00 41.55 3.24
3499 3644 6.940867 ACCAAACAGGAGGAACTTATAAAGAC 59.059 38.462 0.00 0.00 41.55 3.01
3500 3645 7.086685 ACCAAACAGGAGGAACTTATAAAGA 57.913 36.000 0.00 0.00 41.55 2.52
3501 3646 7.761038 AACCAAACAGGAGGAACTTATAAAG 57.239 36.000 0.00 0.00 41.55 1.85
3502 3647 9.292195 CTAAACCAAACAGGAGGAACTTATAAA 57.708 33.333 0.00 0.00 41.55 1.40
3503 3648 8.662255 TCTAAACCAAACAGGAGGAACTTATAA 58.338 33.333 0.00 0.00 41.55 0.98
3504 3649 8.209802 TCTAAACCAAACAGGAGGAACTTATA 57.790 34.615 0.00 0.00 41.55 0.98
3505 3650 7.086685 TCTAAACCAAACAGGAGGAACTTAT 57.913 36.000 0.00 0.00 41.55 1.73
3506 3651 6.503560 TCTAAACCAAACAGGAGGAACTTA 57.496 37.500 0.00 0.00 41.55 2.24
3507 3652 5.382664 TCTAAACCAAACAGGAGGAACTT 57.617 39.130 0.00 0.00 41.55 2.66
3509 3654 4.459337 CCATCTAAACCAAACAGGAGGAAC 59.541 45.833 0.00 0.00 41.22 3.62
3510 3655 4.508405 CCCATCTAAACCAAACAGGAGGAA 60.508 45.833 0.00 0.00 41.22 3.36
3511 3656 3.010138 CCCATCTAAACCAAACAGGAGGA 59.990 47.826 0.00 0.00 41.22 3.71
3512 3657 3.010138 TCCCATCTAAACCAAACAGGAGG 59.990 47.826 0.00 0.00 41.22 4.30
3513 3658 4.010349 GTCCCATCTAAACCAAACAGGAG 58.990 47.826 0.00 0.00 41.22 3.69
3514 3659 3.655777 AGTCCCATCTAAACCAAACAGGA 59.344 43.478 0.00 0.00 41.22 3.86
3515 3660 4.034285 AGTCCCATCTAAACCAAACAGG 57.966 45.455 0.00 0.00 45.67 4.00
3516 3661 8.265055 TCTATAAGTCCCATCTAAACCAAACAG 58.735 37.037 0.00 0.00 0.00 3.16
3517 3662 8.153221 TCTATAAGTCCCATCTAAACCAAACA 57.847 34.615 0.00 0.00 0.00 2.83
3520 3665 9.670442 AGTATCTATAAGTCCCATCTAAACCAA 57.330 33.333 0.00 0.00 0.00 3.67
3521 3666 9.670442 AAGTATCTATAAGTCCCATCTAAACCA 57.330 33.333 0.00 0.00 0.00 3.67
3562 3707 9.758651 GGTGTTTGTTTTTAAGGACTTATTGAT 57.241 29.630 0.00 0.00 0.00 2.57
3563 3708 8.198778 GGGTGTTTGTTTTTAAGGACTTATTGA 58.801 33.333 0.00 0.00 0.00 2.57
3564 3709 8.201464 AGGGTGTTTGTTTTTAAGGACTTATTG 58.799 33.333 0.00 0.00 0.00 1.90
3565 3710 8.313944 AGGGTGTTTGTTTTTAAGGACTTATT 57.686 30.769 0.00 0.00 0.00 1.40
3566 3711 7.783119 AGAGGGTGTTTGTTTTTAAGGACTTAT 59.217 33.333 0.00 0.00 0.00 1.73
3567 3712 7.120716 AGAGGGTGTTTGTTTTTAAGGACTTA 58.879 34.615 0.00 0.00 0.00 2.24
3568 3713 5.955959 AGAGGGTGTTTGTTTTTAAGGACTT 59.044 36.000 0.00 0.00 0.00 3.01
3569 3714 5.516044 AGAGGGTGTTTGTTTTTAAGGACT 58.484 37.500 0.00 0.00 0.00 3.85
3570 3715 5.847111 AGAGGGTGTTTGTTTTTAAGGAC 57.153 39.130 0.00 0.00 0.00 3.85
3571 3716 7.120716 ACTTAGAGGGTGTTTGTTTTTAAGGA 58.879 34.615 0.00 0.00 0.00 3.36
3572 3717 7.342769 ACTTAGAGGGTGTTTGTTTTTAAGG 57.657 36.000 0.00 0.00 0.00 2.69
3573 3718 7.222031 GCAACTTAGAGGGTGTTTGTTTTTAAG 59.778 37.037 0.00 0.00 0.00 1.85
3574 3719 7.036829 GCAACTTAGAGGGTGTTTGTTTTTAA 58.963 34.615 0.00 0.00 0.00 1.52
3575 3720 6.406065 GGCAACTTAGAGGGTGTTTGTTTTTA 60.406 38.462 0.00 0.00 0.00 1.52
3576 3721 5.416083 GCAACTTAGAGGGTGTTTGTTTTT 58.584 37.500 0.00 0.00 0.00 1.94
3577 3722 4.142026 GGCAACTTAGAGGGTGTTTGTTTT 60.142 41.667 0.00 0.00 0.00 2.43
3578 3723 3.383505 GGCAACTTAGAGGGTGTTTGTTT 59.616 43.478 0.00 0.00 0.00 2.83
3579 3724 2.956333 GGCAACTTAGAGGGTGTTTGTT 59.044 45.455 0.00 0.00 0.00 2.83
3580 3725 2.583143 GGCAACTTAGAGGGTGTTTGT 58.417 47.619 0.00 0.00 0.00 2.83
3643 3798 2.510613 GATGGTCCCCGTTTCAAAAGA 58.489 47.619 0.00 0.00 0.00 2.52
3644 3799 1.199097 CGATGGTCCCCGTTTCAAAAG 59.801 52.381 0.00 0.00 0.00 2.27
3653 3808 1.682451 TTTAGAGCCGATGGTCCCCG 61.682 60.000 0.00 0.00 39.89 5.73
3659 3814 4.899502 ACCATTAGATTTAGAGCCGATGG 58.100 43.478 0.00 0.00 38.91 3.51
3678 3833 4.373116 GAGACGGAGGCGCAACCA 62.373 66.667 10.83 0.00 43.14 3.67
3681 3836 4.069232 CAGGAGACGGAGGCGCAA 62.069 66.667 10.83 0.00 0.00 4.85
3693 3848 2.728443 GATCGGGCTGGATGCAGGAG 62.728 65.000 16.65 0.00 45.15 3.69
3694 3849 2.769621 ATCGGGCTGGATGCAGGA 60.770 61.111 16.65 5.25 45.15 3.86
3695 3850 2.281345 GATCGGGCTGGATGCAGG 60.281 66.667 16.65 0.00 45.15 4.85
3696 3851 2.281345 GGATCGGGCTGGATGCAG 60.281 66.667 10.32 10.32 45.15 4.41
3697 3852 3.089217 TGGATCGGGCTGGATGCA 61.089 61.111 8.63 8.63 45.15 3.96
3698 3853 2.281345 CTGGATCGGGCTGGATGC 60.281 66.667 0.00 0.00 41.94 3.91
3699 3854 2.281345 GCTGGATCGGGCTGGATG 60.281 66.667 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.