Multiple sequence alignment - TraesCS6A01G403800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G403800 chr6A 100.000 3221 0 0 1 3221 610928180 610931400 0.000000e+00 5949.0
1 TraesCS6A01G403800 chr6A 83.158 95 1 7 94 188 613763265 613763186 4.460000e-09 73.1
2 TraesCS6A01G403800 chr6A 94.872 39 2 0 2356 2394 555738949 555738911 9.650000e-06 62.1
3 TraesCS6A01G403800 chr6D 92.667 1691 71 24 701 2372 464343509 464345165 0.000000e+00 2386.0
4 TraesCS6A01G403800 chr6D 90.310 1259 87 15 923 2170 464296227 464297461 0.000000e+00 1616.0
5 TraesCS6A01G403800 chr6D 87.634 655 68 13 2577 3221 464345222 464345873 0.000000e+00 749.0
6 TraesCS6A01G403800 chr6D 84.874 238 23 9 2528 2761 464400562 464400790 8.990000e-56 228.0
7 TraesCS6A01G403800 chr6D 87.363 182 4 7 7 188 464342710 464342872 1.180000e-44 191.0
8 TraesCS6A01G403800 chr6D 91.200 125 2 2 310 425 464343329 464343453 9.250000e-36 161.0
9 TraesCS6A01G403800 chr6D 85.333 75 1 6 94 168 467306383 467306319 5.770000e-08 69.4
10 TraesCS6A01G403800 chr6B 94.554 1414 55 14 975 2376 708046308 708047711 0.000000e+00 2165.0
11 TraesCS6A01G403800 chr6B 86.420 891 65 18 1504 2391 708035121 708035958 0.000000e+00 924.0
12 TraesCS6A01G403800 chr6B 82.599 454 58 12 2528 2978 708107338 708107773 6.520000e-102 381.0
13 TraesCS6A01G403800 chr6B 87.879 231 24 4 2604 2833 708070482 708070709 5.300000e-68 268.0
14 TraesCS6A01G403800 chr6B 84.211 228 28 7 2922 3142 708047723 708047949 7.000000e-52 215.0
15 TraesCS6A01G403800 chr6B 95.604 91 2 2 784 874 708045823 708045911 9.310000e-31 145.0
16 TraesCS6A01G403800 chr6B 80.851 188 4 10 1 188 708039066 708039221 5.640000e-23 119.0
17 TraesCS6A01G403800 chr6B 100.000 31 0 0 309 339 708041963 708041993 1.250000e-04 58.4
18 TraesCS6A01G403800 chr6B 96.970 33 0 1 210 242 708041816 708041847 2.000000e-03 54.7
19 TraesCS6A01G403800 chr4A 88.388 1421 109 19 921 2329 216438291 216436915 0.000000e+00 1659.0
20 TraesCS6A01G403800 chr4B 87.094 1356 118 19 982 2320 281603442 281604757 0.000000e+00 1482.0
21 TraesCS6A01G403800 chr1D 88.462 52 6 0 2325 2376 11401619 11401670 2.680000e-06 63.9
22 TraesCS6A01G403800 chr1D 91.304 46 4 0 2332 2377 240600302 240600347 2.680000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G403800 chr6A 610928180 610931400 3220 False 5949.000000 5949 100.000 1 3221 1 chr6A.!!$F1 3220
1 TraesCS6A01G403800 chr6D 464296227 464297461 1234 False 1616.000000 1616 90.310 923 2170 1 chr6D.!!$F1 1247
2 TraesCS6A01G403800 chr6D 464342710 464345873 3163 False 871.750000 2386 89.716 7 3221 4 chr6D.!!$F3 3214
3 TraesCS6A01G403800 chr6B 708035121 708047949 12828 False 525.871429 2165 91.230 1 3142 7 chr6B.!!$F3 3141
4 TraesCS6A01G403800 chr4A 216436915 216438291 1376 True 1659.000000 1659 88.388 921 2329 1 chr4A.!!$R1 1408
5 TraesCS6A01G403800 chr4B 281603442 281604757 1315 False 1482.000000 1482 87.094 982 2320 1 chr4B.!!$F1 1338

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
126 4072 0.030297 AGATCAGATCCACTGGGGCT 60.030 55.0 6.8 0.0 45.76 5.19 F
637 10883 0.033208 GATGCCCAAATCCCTCACCA 60.033 55.0 0.0 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1821 12388 0.317854 CGAAGATGCAGTCCGCGATA 60.318 55.0 8.23 0.0 46.97 2.92 R
2418 12994 0.109086 CACGGACTTCTCAGCGTCAT 60.109 55.0 0.00 0.0 31.88 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 3991 6.910433 GGCAATCGTAAAATCGAAATGTATGT 59.090 34.615 0.00 0.00 42.99 2.29
46 3992 8.065407 GGCAATCGTAAAATCGAAATGTATGTA 58.935 33.333 0.00 0.00 42.99 2.29
47 3993 9.594038 GCAATCGTAAAATCGAAATGTATGTAT 57.406 29.630 0.00 0.00 42.99 2.29
93 4039 2.159170 GCTGCGGAGTAGAGACATCTTT 60.159 50.000 5.62 0.00 45.23 2.52
122 4068 7.002250 ACACAATATAGATCAGATCCACTGG 57.998 40.000 6.80 0.00 45.76 4.00
123 4069 6.013898 ACACAATATAGATCAGATCCACTGGG 60.014 42.308 6.80 2.18 45.76 4.45
124 4070 5.486775 ACAATATAGATCAGATCCACTGGGG 59.513 44.000 6.80 0.00 45.76 4.96
125 4071 1.722034 TAGATCAGATCCACTGGGGC 58.278 55.000 6.80 0.00 45.76 5.80
126 4072 0.030297 AGATCAGATCCACTGGGGCT 60.030 55.000 6.80 0.00 45.76 5.19
163 4109 6.808704 GCAGAAAATACCTTTGGAATGAGTTC 59.191 38.462 0.00 0.00 0.00 3.01
250 6795 2.757077 CGGGGCTGTCCTCCTTTT 59.243 61.111 0.00 0.00 35.33 2.27
278 6843 1.518302 GCCCGTCCTCTCCTCTTTC 59.482 63.158 0.00 0.00 0.00 2.62
282 6847 1.205893 CCGTCCTCTCCTCTTTCAAGG 59.794 57.143 0.00 0.00 37.81 3.61
307 6872 1.303888 CATGCCTGAACCCTGCTGT 60.304 57.895 0.00 0.00 0.00 4.40
425 10643 5.755849 ACTTATGGTCAAATAACTGGGGAG 58.244 41.667 0.00 0.00 0.00 4.30
440 10683 0.897621 GGGAGGCCCAAAAACATGAG 59.102 55.000 0.00 0.00 44.65 2.90
441 10684 0.247460 GGAGGCCCAAAAACATGAGC 59.753 55.000 0.00 0.00 0.00 4.26
443 10686 1.079888 GGCCCAAAAACATGAGCGG 60.080 57.895 0.00 0.00 0.00 5.52
445 10688 0.316841 GCCCAAAAACATGAGCGGAA 59.683 50.000 0.00 0.00 0.00 4.30
447 10690 2.804933 GCCCAAAAACATGAGCGGAAAA 60.805 45.455 0.00 0.00 0.00 2.29
448 10691 3.462021 CCCAAAAACATGAGCGGAAAAA 58.538 40.909 0.00 0.00 0.00 1.94
450 10693 3.868077 CCAAAAACATGAGCGGAAAAACA 59.132 39.130 0.00 0.00 0.00 2.83
451 10694 4.331168 CCAAAAACATGAGCGGAAAAACAA 59.669 37.500 0.00 0.00 0.00 2.83
452 10695 5.254842 CAAAAACATGAGCGGAAAAACAAC 58.745 37.500 0.00 0.00 0.00 3.32
454 10697 4.320608 AACATGAGCGGAAAAACAACAT 57.679 36.364 0.00 0.00 0.00 2.71
455 10698 4.320608 ACATGAGCGGAAAAACAACATT 57.679 36.364 0.00 0.00 0.00 2.71
456 10699 4.298332 ACATGAGCGGAAAAACAACATTC 58.702 39.130 0.00 0.00 0.00 2.67
457 10700 4.037923 ACATGAGCGGAAAAACAACATTCT 59.962 37.500 0.00 0.00 0.00 2.40
458 10701 4.223320 TGAGCGGAAAAACAACATTCTC 57.777 40.909 0.00 0.00 0.00 2.87
459 10702 3.882888 TGAGCGGAAAAACAACATTCTCT 59.117 39.130 0.00 0.00 0.00 3.10
460 10703 4.024048 TGAGCGGAAAAACAACATTCTCTC 60.024 41.667 0.00 0.00 0.00 3.20
461 10704 3.058914 AGCGGAAAAACAACATTCTCTCG 60.059 43.478 0.00 0.00 0.00 4.04
462 10705 3.226347 CGGAAAAACAACATTCTCTCGC 58.774 45.455 0.00 0.00 0.00 5.03
463 10706 3.565516 GGAAAAACAACATTCTCTCGCC 58.434 45.455 0.00 0.00 0.00 5.54
464 10707 3.565516 GAAAAACAACATTCTCTCGCCC 58.434 45.455 0.00 0.00 0.00 6.13
465 10708 1.534729 AAACAACATTCTCTCGCCCC 58.465 50.000 0.00 0.00 0.00 5.80
466 10709 0.400213 AACAACATTCTCTCGCCCCA 59.600 50.000 0.00 0.00 0.00 4.96
467 10710 0.400213 ACAACATTCTCTCGCCCCAA 59.600 50.000 0.00 0.00 0.00 4.12
468 10711 0.804989 CAACATTCTCTCGCCCCAAC 59.195 55.000 0.00 0.00 0.00 3.77
469 10712 0.400213 AACATTCTCTCGCCCCAACA 59.600 50.000 0.00 0.00 0.00 3.33
470 10713 0.400213 ACATTCTCTCGCCCCAACAA 59.600 50.000 0.00 0.00 0.00 2.83
471 10714 1.202879 ACATTCTCTCGCCCCAACAAA 60.203 47.619 0.00 0.00 0.00 2.83
472 10715 1.200020 CATTCTCTCGCCCCAACAAAC 59.800 52.381 0.00 0.00 0.00 2.93
473 10716 0.536460 TTCTCTCGCCCCAACAAACC 60.536 55.000 0.00 0.00 0.00 3.27
474 10717 1.228124 CTCTCGCCCCAACAAACCA 60.228 57.895 0.00 0.00 0.00 3.67
475 10718 0.609131 CTCTCGCCCCAACAAACCAT 60.609 55.000 0.00 0.00 0.00 3.55
476 10719 0.693622 TCTCGCCCCAACAAACCATA 59.306 50.000 0.00 0.00 0.00 2.74
477 10720 1.074084 TCTCGCCCCAACAAACCATAA 59.926 47.619 0.00 0.00 0.00 1.90
478 10721 1.201414 CTCGCCCCAACAAACCATAAC 59.799 52.381 0.00 0.00 0.00 1.89
479 10722 1.202952 TCGCCCCAACAAACCATAACT 60.203 47.619 0.00 0.00 0.00 2.24
480 10723 1.616374 CGCCCCAACAAACCATAACTT 59.384 47.619 0.00 0.00 0.00 2.66
481 10724 2.820787 CGCCCCAACAAACCATAACTTA 59.179 45.455 0.00 0.00 0.00 2.24
482 10725 3.366577 CGCCCCAACAAACCATAACTTAC 60.367 47.826 0.00 0.00 0.00 2.34
483 10726 3.366577 GCCCCAACAAACCATAACTTACG 60.367 47.826 0.00 0.00 0.00 3.18
484 10727 3.191791 CCCCAACAAACCATAACTTACGG 59.808 47.826 0.00 0.00 0.00 4.02
485 10728 3.822167 CCCAACAAACCATAACTTACGGT 59.178 43.478 0.00 0.00 33.32 4.83
486 10729 4.083164 CCCAACAAACCATAACTTACGGTC 60.083 45.833 0.00 0.00 30.91 4.79
487 10730 4.515944 CCAACAAACCATAACTTACGGTCA 59.484 41.667 0.00 0.00 30.91 4.02
488 10731 5.008811 CCAACAAACCATAACTTACGGTCAA 59.991 40.000 0.00 0.00 30.91 3.18
489 10732 6.459848 CCAACAAACCATAACTTACGGTCAAA 60.460 38.462 0.00 0.00 30.91 2.69
490 10733 6.887626 ACAAACCATAACTTACGGTCAAAT 57.112 33.333 0.00 0.00 30.91 2.32
491 10734 7.982761 ACAAACCATAACTTACGGTCAAATA 57.017 32.000 0.00 0.00 30.91 1.40
492 10735 8.393671 ACAAACCATAACTTACGGTCAAATAA 57.606 30.769 0.00 0.00 30.91 1.40
493 10736 8.508875 ACAAACCATAACTTACGGTCAAATAAG 58.491 33.333 0.00 0.00 35.03 1.73
494 10737 8.723311 CAAACCATAACTTACGGTCAAATAAGA 58.277 33.333 0.00 0.00 33.44 2.10
495 10738 9.457436 AAACCATAACTTACGGTCAAATAAGAT 57.543 29.630 0.00 0.00 33.44 2.40
496 10739 8.433421 ACCATAACTTACGGTCAAATAAGATG 57.567 34.615 0.00 0.00 33.44 2.90
497 10740 7.497909 ACCATAACTTACGGTCAAATAAGATGG 59.502 37.037 8.88 8.88 38.05 3.51
498 10741 7.713507 CCATAACTTACGGTCAAATAAGATGGA 59.286 37.037 6.11 0.00 36.13 3.41
499 10742 9.104965 CATAACTTACGGTCAAATAAGATGGAA 57.895 33.333 0.00 0.00 33.44 3.53
500 10743 7.989416 AACTTACGGTCAAATAAGATGGAAA 57.011 32.000 0.00 0.00 33.44 3.13
501 10744 7.989416 ACTTACGGTCAAATAAGATGGAAAA 57.011 32.000 0.00 0.00 33.44 2.29
502 10745 8.398878 ACTTACGGTCAAATAAGATGGAAAAA 57.601 30.769 0.00 0.00 33.44 1.94
531 10774 2.995283 CATCCTCTGCTCCAAACATGA 58.005 47.619 0.00 0.00 0.00 3.07
532 10775 3.349927 CATCCTCTGCTCCAAACATGAA 58.650 45.455 0.00 0.00 0.00 2.57
533 10776 3.063510 TCCTCTGCTCCAAACATGAAG 57.936 47.619 0.00 0.00 0.00 3.02
534 10777 2.089980 CCTCTGCTCCAAACATGAAGG 58.910 52.381 0.00 0.00 0.00 3.46
535 10778 2.553904 CCTCTGCTCCAAACATGAAGGT 60.554 50.000 0.00 0.00 0.00 3.50
536 10779 3.152341 CTCTGCTCCAAACATGAAGGTT 58.848 45.455 0.00 0.00 0.00 3.50
537 10780 2.886523 TCTGCTCCAAACATGAAGGTTG 59.113 45.455 0.00 0.00 44.75 3.77
538 10781 1.340889 TGCTCCAAACATGAAGGTTGC 59.659 47.619 0.00 7.89 43.77 4.17
539 10782 1.666888 GCTCCAAACATGAAGGTTGCG 60.667 52.381 0.00 0.00 43.77 4.85
540 10783 1.879380 CTCCAAACATGAAGGTTGCGA 59.121 47.619 0.00 0.00 43.77 5.10
541 10784 2.489329 CTCCAAACATGAAGGTTGCGAT 59.511 45.455 0.00 0.00 43.77 4.58
542 10785 2.228582 TCCAAACATGAAGGTTGCGATG 59.771 45.455 0.00 0.00 43.77 3.84
543 10786 1.987770 CAAACATGAAGGTTGCGATGC 59.012 47.619 0.00 0.00 38.25 3.91
544 10787 0.168788 AACATGAAGGTTGCGATGCG 59.831 50.000 0.00 0.00 0.00 4.73
555 10798 4.717988 CGATGCGCTAGCTCTCAA 57.282 55.556 13.93 0.00 45.42 3.02
556 10799 2.963499 CGATGCGCTAGCTCTCAAA 58.037 52.632 13.93 0.00 45.42 2.69
557 10800 1.495878 CGATGCGCTAGCTCTCAAAT 58.504 50.000 13.93 0.00 45.42 2.32
558 10801 1.455030 CGATGCGCTAGCTCTCAAATC 59.545 52.381 13.93 3.06 45.42 2.17
559 10802 1.797635 GATGCGCTAGCTCTCAAATCC 59.202 52.381 13.93 0.00 45.42 3.01
560 10803 0.826715 TGCGCTAGCTCTCAAATCCT 59.173 50.000 13.93 0.00 45.42 3.24
561 10804 1.202463 TGCGCTAGCTCTCAAATCCTC 60.202 52.381 13.93 0.00 45.42 3.71
562 10805 1.068434 GCGCTAGCTCTCAAATCCTCT 59.932 52.381 13.93 0.00 41.01 3.69
563 10806 2.482839 GCGCTAGCTCTCAAATCCTCTT 60.483 50.000 13.93 0.00 41.01 2.85
564 10807 3.122297 CGCTAGCTCTCAAATCCTCTTG 58.878 50.000 13.93 0.00 0.00 3.02
565 10808 3.430098 CGCTAGCTCTCAAATCCTCTTGT 60.430 47.826 13.93 0.00 0.00 3.16
566 10809 4.512484 GCTAGCTCTCAAATCCTCTTGTT 58.488 43.478 7.70 0.00 0.00 2.83
567 10810 4.570369 GCTAGCTCTCAAATCCTCTTGTTC 59.430 45.833 7.70 0.00 0.00 3.18
568 10811 3.949132 AGCTCTCAAATCCTCTTGTTCC 58.051 45.455 0.00 0.00 0.00 3.62
569 10812 3.328931 AGCTCTCAAATCCTCTTGTTCCA 59.671 43.478 0.00 0.00 0.00 3.53
570 10813 3.438434 GCTCTCAAATCCTCTTGTTCCAC 59.562 47.826 0.00 0.00 0.00 4.02
571 10814 4.006319 CTCTCAAATCCTCTTGTTCCACC 58.994 47.826 0.00 0.00 0.00 4.61
572 10815 2.744202 CTCAAATCCTCTTGTTCCACCG 59.256 50.000 0.00 0.00 0.00 4.94
573 10816 1.200020 CAAATCCTCTTGTTCCACCGC 59.800 52.381 0.00 0.00 0.00 5.68
574 10817 0.673644 AATCCTCTTGTTCCACCGCG 60.674 55.000 0.00 0.00 0.00 6.46
575 10818 3.423154 CCTCTTGTTCCACCGCGC 61.423 66.667 0.00 0.00 0.00 6.86
576 10819 3.777925 CTCTTGTTCCACCGCGCG 61.778 66.667 25.67 25.67 0.00 6.86
581 10824 4.322385 GTTCCACCGCGCGCTTTT 62.322 61.111 30.48 10.08 0.00 2.27
582 10825 3.587933 TTCCACCGCGCGCTTTTT 61.588 55.556 30.48 7.19 0.00 1.94
628 10874 2.828549 GCCCGTCGATGCCCAAAT 60.829 61.111 0.00 0.00 0.00 2.32
631 10877 2.186826 CCGTCGATGCCCAAATCCC 61.187 63.158 0.00 0.00 0.00 3.85
632 10878 1.153168 CGTCGATGCCCAAATCCCT 60.153 57.895 0.00 0.00 0.00 4.20
633 10879 1.160329 CGTCGATGCCCAAATCCCTC 61.160 60.000 0.00 0.00 0.00 4.30
634 10880 0.107214 GTCGATGCCCAAATCCCTCA 60.107 55.000 0.00 0.00 0.00 3.86
635 10881 0.107214 TCGATGCCCAAATCCCTCAC 60.107 55.000 0.00 0.00 0.00 3.51
636 10882 1.103398 CGATGCCCAAATCCCTCACC 61.103 60.000 0.00 0.00 0.00 4.02
637 10883 0.033208 GATGCCCAAATCCCTCACCA 60.033 55.000 0.00 0.00 0.00 4.17
638 10884 0.324645 ATGCCCAAATCCCTCACCAC 60.325 55.000 0.00 0.00 0.00 4.16
639 10885 1.682344 GCCCAAATCCCTCACCACC 60.682 63.158 0.00 0.00 0.00 4.61
640 10886 1.773635 CCCAAATCCCTCACCACCA 59.226 57.895 0.00 0.00 0.00 4.17
641 10887 0.611896 CCCAAATCCCTCACCACCAC 60.612 60.000 0.00 0.00 0.00 4.16
642 10888 0.611896 CCAAATCCCTCACCACCACC 60.612 60.000 0.00 0.00 0.00 4.61
643 10889 0.611896 CAAATCCCTCACCACCACCC 60.612 60.000 0.00 0.00 0.00 4.61
644 10890 2.137177 AAATCCCTCACCACCACCCG 62.137 60.000 0.00 0.00 0.00 5.28
645 10891 3.864983 ATCCCTCACCACCACCCGT 62.865 63.158 0.00 0.00 0.00 5.28
646 10892 4.016706 CCCTCACCACCACCCGTC 62.017 72.222 0.00 0.00 0.00 4.79
647 10893 4.373116 CCTCACCACCACCCGTCG 62.373 72.222 0.00 0.00 0.00 5.12
648 10894 3.299977 CTCACCACCACCCGTCGA 61.300 66.667 0.00 0.00 0.00 4.20
649 10895 3.569049 CTCACCACCACCCGTCGAC 62.569 68.421 5.18 5.18 0.00 4.20
650 10896 4.675029 CACCACCACCCGTCGACC 62.675 72.222 10.58 0.00 0.00 4.79
671 10917 4.200283 CAGCTCTCGGCCGTCCTC 62.200 72.222 27.15 13.22 43.05 3.71
675 10921 4.458829 TCTCGGCCGTCCTCCCAT 62.459 66.667 27.15 0.00 0.00 4.00
676 10922 3.917760 CTCGGCCGTCCTCCCATC 61.918 72.222 27.15 0.00 0.00 3.51
677 10923 4.770362 TCGGCCGTCCTCCCATCA 62.770 66.667 27.15 0.00 0.00 3.07
678 10924 4.530857 CGGCCGTCCTCCCATCAC 62.531 72.222 19.50 0.00 0.00 3.06
679 10925 4.176752 GGCCGTCCTCCCATCACC 62.177 72.222 0.00 0.00 0.00 4.02
680 10926 3.399181 GCCGTCCTCCCATCACCA 61.399 66.667 0.00 0.00 0.00 4.17
681 10927 2.584608 CCGTCCTCCCATCACCAC 59.415 66.667 0.00 0.00 0.00 4.16
682 10928 2.584608 CGTCCTCCCATCACCACC 59.415 66.667 0.00 0.00 0.00 4.61
683 10929 2.584608 GTCCTCCCATCACCACCG 59.415 66.667 0.00 0.00 0.00 4.94
684 10930 3.399181 TCCTCCCATCACCACCGC 61.399 66.667 0.00 0.00 0.00 5.68
685 10931 4.838152 CCTCCCATCACCACCGCG 62.838 72.222 0.00 0.00 0.00 6.46
686 10932 4.838152 CTCCCATCACCACCGCGG 62.838 72.222 26.86 26.86 42.50 6.46
731 10980 0.684805 AGAGGGATCACCGGTGAGTC 60.685 60.000 37.98 31.10 46.96 3.36
782 11031 1.510204 GAGAGCTCGTGTCGTCGTG 60.510 63.158 8.37 0.00 0.00 4.35
788 11037 3.097728 CGTGTCGTCGTGTGCTCC 61.098 66.667 0.00 0.00 0.00 4.70
867 11117 1.979469 CGTCAGTCAGTCAGCGTTTAG 59.021 52.381 0.00 0.00 0.00 1.85
870 11120 3.802685 GTCAGTCAGTCAGCGTTTAGTTT 59.197 43.478 0.00 0.00 0.00 2.66
873 11123 4.386049 CAGTCAGTCAGCGTTTAGTTTAGG 59.614 45.833 0.00 0.00 0.00 2.69
875 11125 5.047235 AGTCAGTCAGCGTTTAGTTTAGGAT 60.047 40.000 0.00 0.00 0.00 3.24
877 11127 6.472808 GTCAGTCAGCGTTTAGTTTAGGATAG 59.527 42.308 0.00 0.00 0.00 2.08
878 11128 5.749109 CAGTCAGCGTTTAGTTTAGGATAGG 59.251 44.000 0.00 0.00 0.00 2.57
879 11129 5.655532 AGTCAGCGTTTAGTTTAGGATAGGA 59.344 40.000 0.00 0.00 0.00 2.94
880 11130 6.154021 AGTCAGCGTTTAGTTTAGGATAGGAA 59.846 38.462 0.00 0.00 0.00 3.36
910 11160 4.109675 CGGATTGCCTCCCCCGTT 62.110 66.667 0.00 0.00 41.49 4.44
911 11161 2.359011 GGATTGCCTCCCCCGTTT 59.641 61.111 0.00 0.00 38.19 3.60
912 11162 1.610873 GGATTGCCTCCCCCGTTTA 59.389 57.895 0.00 0.00 38.19 2.01
913 11163 0.465642 GGATTGCCTCCCCCGTTTAG 60.466 60.000 0.00 0.00 38.19 1.85
914 11164 0.255033 GATTGCCTCCCCCGTTTAGT 59.745 55.000 0.00 0.00 0.00 2.24
915 11165 0.702316 ATTGCCTCCCCCGTTTAGTT 59.298 50.000 0.00 0.00 0.00 2.24
916 11166 0.479378 TTGCCTCCCCCGTTTAGTTT 59.521 50.000 0.00 0.00 0.00 2.66
917 11167 1.360185 TGCCTCCCCCGTTTAGTTTA 58.640 50.000 0.00 0.00 0.00 2.01
936 11186 4.279043 GCCGCCACCACCACAAAC 62.279 66.667 0.00 0.00 0.00 2.93
937 11187 3.959975 CCGCCACCACCACAAACG 61.960 66.667 0.00 0.00 0.00 3.60
938 11188 4.622456 CGCCACCACCACAAACGC 62.622 66.667 0.00 0.00 0.00 4.84
939 11189 3.216292 GCCACCACCACAAACGCT 61.216 61.111 0.00 0.00 0.00 5.07
1108 11668 3.365265 CCCTCACAACCGCCAAGC 61.365 66.667 0.00 0.00 0.00 4.01
1866 12433 3.601435 GGAGAAGGCTAACAAGGTTCTC 58.399 50.000 0.00 0.00 41.56 2.87
2004 12573 0.033503 TCTGGGTGCTCGATGGACTA 60.034 55.000 6.51 0.00 37.18 2.59
2007 12576 1.395826 GGGTGCTCGATGGACTAGCT 61.396 60.000 0.00 0.00 38.02 3.32
2013 12582 2.362717 GCTCGATGGACTAGCTAAGGTT 59.637 50.000 0.00 0.00 34.96 3.50
2248 12818 3.511540 GGCCTTCCAGCTTGTAAATTCTT 59.488 43.478 0.00 0.00 0.00 2.52
2249 12819 4.021104 GGCCTTCCAGCTTGTAAATTCTTT 60.021 41.667 0.00 0.00 0.00 2.52
2250 12820 5.511373 GGCCTTCCAGCTTGTAAATTCTTTT 60.511 40.000 0.00 0.00 0.00 2.27
2379 12955 8.785468 GCGTCCGGCTTTAAATTAATAATAAA 57.215 30.769 0.00 0.00 39.11 1.40
2380 12956 8.898792 GCGTCCGGCTTTAAATTAATAATAAAG 58.101 33.333 19.66 19.66 38.86 1.85
2397 12973 6.839124 AATAAAGCCATCAGACATCAAACA 57.161 33.333 0.00 0.00 0.00 2.83
2418 12994 8.612619 CAAACAGAGTTTAAAAAGCAGAGTAGA 58.387 33.333 0.00 0.00 0.00 2.59
2419 12995 8.910351 AACAGAGTTTAAAAAGCAGAGTAGAT 57.090 30.769 0.00 0.00 0.00 1.98
2420 12996 8.316640 ACAGAGTTTAAAAAGCAGAGTAGATG 57.683 34.615 0.00 0.00 0.00 2.90
2422 12998 8.439286 CAGAGTTTAAAAAGCAGAGTAGATGAC 58.561 37.037 0.00 0.00 0.00 3.06
2423 12999 7.329717 AGAGTTTAAAAAGCAGAGTAGATGACG 59.670 37.037 0.00 0.00 0.00 4.35
2424 13000 5.779806 TTAAAAAGCAGAGTAGATGACGC 57.220 39.130 0.00 0.00 0.00 5.19
2425 13001 3.601443 AAAAGCAGAGTAGATGACGCT 57.399 42.857 0.00 0.00 39.00 5.07
2432 13008 3.616219 AGAGTAGATGACGCTGAGAAGT 58.384 45.455 0.00 0.00 36.75 3.01
2433 13009 3.625764 AGAGTAGATGACGCTGAGAAGTC 59.374 47.826 2.28 2.28 36.75 3.01
2434 13010 2.685897 AGTAGATGACGCTGAGAAGTCC 59.314 50.000 6.15 0.00 36.61 3.85
2436 13012 0.171455 GATGACGCTGAGAAGTCCGT 59.829 55.000 6.15 0.00 36.61 4.69
2437 13013 0.109086 ATGACGCTGAGAAGTCCGTG 60.109 55.000 6.15 0.00 36.61 4.94
2442 13018 0.389166 GCTGAGAAGTCCGTGGAGTG 60.389 60.000 0.00 0.00 0.00 3.51
2445 13021 2.432628 GAAGTCCGTGGAGTGGCG 60.433 66.667 0.00 0.00 0.00 5.69
2446 13022 4.681978 AAGTCCGTGGAGTGGCGC 62.682 66.667 0.00 0.00 0.00 6.53
2451 13027 4.056125 CGTGGAGTGGCGCTGAGA 62.056 66.667 4.71 0.00 0.00 3.27
2452 13028 2.343758 GTGGAGTGGCGCTGAGAA 59.656 61.111 4.71 0.00 0.00 2.87
2453 13029 1.739562 GTGGAGTGGCGCTGAGAAG 60.740 63.158 4.71 0.00 0.00 2.85
2454 13030 1.908299 TGGAGTGGCGCTGAGAAGA 60.908 57.895 4.71 0.00 0.00 2.87
2455 13031 1.260538 TGGAGTGGCGCTGAGAAGAT 61.261 55.000 4.71 0.00 0.00 2.40
2456 13032 0.809241 GGAGTGGCGCTGAGAAGATG 60.809 60.000 4.71 0.00 0.00 2.90
2457 13033 0.174389 GAGTGGCGCTGAGAAGATGA 59.826 55.000 4.71 0.00 0.00 2.92
2458 13034 0.108424 AGTGGCGCTGAGAAGATGAC 60.108 55.000 7.64 0.00 0.00 3.06
2459 13035 1.153765 TGGCGCTGAGAAGATGACG 60.154 57.895 7.64 0.00 0.00 4.35
2460 13036 2.520904 GGCGCTGAGAAGATGACGC 61.521 63.158 7.64 0.00 45.19 5.19
2461 13037 1.518133 GCGCTGAGAAGATGACGCT 60.518 57.895 0.00 0.00 42.81 5.07
2462 13038 1.750572 GCGCTGAGAAGATGACGCTG 61.751 60.000 0.00 0.00 42.81 5.18
2463 13039 1.750572 CGCTGAGAAGATGACGCTGC 61.751 60.000 0.00 0.00 0.00 5.25
2464 13040 1.427592 GCTGAGAAGATGACGCTGCC 61.428 60.000 0.00 0.00 0.00 4.85
2465 13041 1.144565 CTGAGAAGATGACGCTGCCG 61.145 60.000 0.00 0.00 41.14 5.69
2466 13042 2.510238 AGAAGATGACGCTGCCGC 60.510 61.111 0.00 0.00 38.22 6.53
2479 13055 4.803426 GCCGCGTCAGGAGTGGAG 62.803 72.222 4.92 0.00 41.54 3.86
2480 13056 3.062466 CCGCGTCAGGAGTGGAGA 61.062 66.667 4.92 0.00 41.54 3.71
2481 13057 2.487428 CGCGTCAGGAGTGGAGAG 59.513 66.667 0.00 0.00 0.00 3.20
2482 13058 2.183046 GCGTCAGGAGTGGAGAGC 59.817 66.667 0.00 0.00 0.00 4.09
2483 13059 2.888863 CGTCAGGAGTGGAGAGCC 59.111 66.667 0.00 0.00 0.00 4.70
2484 13060 2.716017 CGTCAGGAGTGGAGAGCCC 61.716 68.421 0.00 0.00 0.00 5.19
2485 13061 1.305718 GTCAGGAGTGGAGAGCCCT 60.306 63.158 0.00 0.00 35.38 5.19
2486 13062 1.000993 TCAGGAGTGGAGAGCCCTC 59.999 63.158 0.00 0.00 38.70 4.30
2494 13070 3.213402 GAGAGCCCTCCGTCCTCG 61.213 72.222 0.00 0.00 33.30 4.63
2495 13071 3.999297 GAGAGCCCTCCGTCCTCGT 62.999 68.421 0.00 0.00 33.30 4.18
2496 13072 3.519930 GAGCCCTCCGTCCTCGTC 61.520 72.222 0.00 0.00 35.01 4.20
2499 13075 3.203412 CCCTCCGTCCTCGTCGAG 61.203 72.222 15.53 15.53 35.01 4.04
2507 13083 2.024871 CCTCGTCGAGGCGATGTC 59.975 66.667 27.52 0.00 43.29 3.06
2508 13084 2.351322 CTCGTCGAGGCGATGTCG 60.351 66.667 14.68 0.00 42.61 4.35
2509 13085 3.791928 CTCGTCGAGGCGATGTCGG 62.792 68.421 14.68 0.00 42.61 4.79
2510 13086 3.872728 CGTCGAGGCGATGTCGGA 61.873 66.667 4.44 0.00 38.42 4.55
2511 13087 2.278013 GTCGAGGCGATGTCGGAC 60.278 66.667 0.00 0.00 38.42 4.79
2512 13088 2.748647 TCGAGGCGATGTCGGACA 60.749 61.111 14.01 14.01 40.23 4.02
2513 13089 2.278206 CGAGGCGATGTCGGACAG 60.278 66.667 16.84 5.04 40.23 3.51
2514 13090 2.105128 GAGGCGATGTCGGACAGG 59.895 66.667 16.84 11.64 40.23 4.00
2515 13091 3.432051 GAGGCGATGTCGGACAGGG 62.432 68.421 16.84 11.29 40.23 4.45
2516 13092 4.530857 GGCGATGTCGGACAGGGG 62.531 72.222 16.84 8.91 40.23 4.79
2517 13093 3.458163 GCGATGTCGGACAGGGGA 61.458 66.667 16.84 0.00 40.23 4.81
2518 13094 3.014085 GCGATGTCGGACAGGGGAA 62.014 63.158 16.84 0.00 40.23 3.97
2519 13095 1.153628 CGATGTCGGACAGGGGAAC 60.154 63.158 16.84 3.27 35.37 3.62
2520 13096 1.153628 GATGTCGGACAGGGGAACG 60.154 63.158 16.84 0.00 0.00 3.95
2521 13097 3.310860 ATGTCGGACAGGGGAACGC 62.311 63.158 16.84 0.00 43.76 4.84
2522 13098 4.754667 GTCGGACAGGGGAACGCC 62.755 72.222 2.62 0.00 44.92 5.68
2544 13120 4.465512 GTCAATGCCACGCCGCTG 62.466 66.667 0.00 0.00 0.00 5.18
2551 13127 2.892425 CCACGCCGCTGGAGATTC 60.892 66.667 5.46 0.00 32.30 2.52
2552 13128 2.892425 CACGCCGCTGGAGATTCC 60.892 66.667 5.46 0.00 36.96 3.01
2553 13129 3.077556 ACGCCGCTGGAGATTCCT 61.078 61.111 5.46 0.00 37.46 3.36
2554 13130 2.587194 CGCCGCTGGAGATTCCTG 60.587 66.667 0.00 0.00 37.46 3.86
2560 13136 1.445095 CTGGAGATTCCTGCGGAGG 59.555 63.158 18.34 18.34 39.21 4.30
2561 13137 2.037620 CTGGAGATTCCTGCGGAGGG 62.038 65.000 24.01 4.51 39.21 4.30
2562 13138 2.812619 GGAGATTCCTGCGGAGGGG 61.813 68.421 24.01 0.00 40.25 4.79
2563 13139 1.762460 GAGATTCCTGCGGAGGGGA 60.762 63.158 24.01 12.67 40.25 4.81
2564 13140 1.306997 AGATTCCTGCGGAGGGGAA 60.307 57.895 24.01 11.75 44.37 3.97
2565 13141 1.147153 GATTCCTGCGGAGGGGAAG 59.853 63.158 24.01 0.00 43.64 3.46
2566 13142 2.330924 GATTCCTGCGGAGGGGAAGG 62.331 65.000 24.01 0.00 43.64 3.46
2569 13145 4.479993 CTGCGGAGGGGAAGGCTG 62.480 72.222 0.00 0.00 0.00 4.85
2572 13148 4.479993 CGGAGGGGAAGGCTGCTG 62.480 72.222 0.00 0.00 0.00 4.41
2573 13149 4.811364 GGAGGGGAAGGCTGCTGC 62.811 72.222 7.10 7.10 38.76 5.25
2597 13173 1.371758 GAGTCGTGACTGAAGCGCA 60.372 57.895 11.47 0.00 42.66 6.09
2628 13204 4.250116 ACATGCAAATTTTCCGTAGCAA 57.750 36.364 3.13 0.00 35.45 3.91
2642 13218 2.575532 GTAGCAATTGCAGGCTCCATA 58.424 47.619 30.89 10.17 45.16 2.74
2645 13221 3.036091 AGCAATTGCAGGCTCCATAATT 58.964 40.909 30.89 3.64 45.16 1.40
2655 13231 5.336690 GCAGGCTCCATAATTTGTTCTTTCA 60.337 40.000 0.00 0.00 0.00 2.69
2661 13237 8.919661 GCTCCATAATTTGTTCTTTCAGAAAAG 58.080 33.333 0.00 0.00 42.77 2.27
2701 13277 7.615582 TTTGTTCCAGATAAGTATGCTTCAG 57.384 36.000 0.00 0.00 36.22 3.02
2735 13311 1.202891 TCACAGTTCTCTGACCGAGGA 60.203 52.381 0.00 0.00 43.76 3.71
2736 13312 1.821753 CACAGTTCTCTGACCGAGGAT 59.178 52.381 0.00 0.00 43.76 3.24
2737 13313 3.017442 CACAGTTCTCTGACCGAGGATA 58.983 50.000 0.00 0.00 43.76 2.59
2746 13322 3.952323 TCTGACCGAGGATATTCTTTCGT 59.048 43.478 0.00 0.00 0.00 3.85
2793 13369 6.299805 TGCAGTAACAGAAGTTCAGGATAT 57.700 37.500 5.50 0.00 39.15 1.63
2795 13371 6.109359 GCAGTAACAGAAGTTCAGGATATGT 58.891 40.000 5.50 0.00 39.15 2.29
2806 13382 7.865706 AGTTCAGGATATGTATTTTGGTGTC 57.134 36.000 0.00 0.00 0.00 3.67
2813 13389 6.018180 GGATATGTATTTTGGTGTCTCCGTTC 60.018 42.308 0.00 0.00 39.52 3.95
2814 13390 3.404899 TGTATTTTGGTGTCTCCGTTCC 58.595 45.455 0.00 0.00 39.52 3.62
2817 13393 1.124780 TTTGGTGTCTCCGTTCCTGA 58.875 50.000 0.00 0.00 39.52 3.86
2818 13394 1.124780 TTGGTGTCTCCGTTCCTGAA 58.875 50.000 0.00 0.00 39.52 3.02
2822 13398 0.033504 TGTCTCCGTTCCTGAACTGC 59.966 55.000 8.28 0.00 39.08 4.40
2824 13400 1.544691 GTCTCCGTTCCTGAACTGCTA 59.455 52.381 8.28 0.00 39.08 3.49
2830 13406 2.094700 CGTTCCTGAACTGCTACTGCTA 60.095 50.000 8.28 0.00 39.08 3.49
2832 13408 1.478510 TCCTGAACTGCTACTGCTAGC 59.521 52.381 8.10 8.10 45.19 3.42
2841 13417 3.840890 GCTACTGCTAGCGATCTGTAT 57.159 47.619 10.77 0.00 36.26 2.29
2847 13423 4.822350 ACTGCTAGCGATCTGTATTCACTA 59.178 41.667 10.77 0.00 0.00 2.74
2848 13424 5.109662 TGCTAGCGATCTGTATTCACTAC 57.890 43.478 10.77 0.00 0.00 2.73
2849 13425 4.023107 TGCTAGCGATCTGTATTCACTACC 60.023 45.833 10.77 0.00 0.00 3.18
2871 13448 0.764890 ACAGTTACTGCAGCCAGGAA 59.235 50.000 15.27 0.00 43.53 3.36
2881 13458 1.540267 GCAGCCAGGAATGCATCTATG 59.460 52.381 11.33 0.00 42.11 2.23
2888 13465 3.881089 CAGGAATGCATCTATGAGCACAA 59.119 43.478 0.00 0.00 44.49 3.33
2893 13470 4.212143 TGCATCTATGAGCACAAGACTT 57.788 40.909 0.00 0.00 35.51 3.01
2961 13540 1.194218 AACAACTTGCCAAGCTGGTT 58.806 45.000 12.15 7.75 40.46 3.67
2971 13550 2.485302 GCCAAGCTGGTTCCAAAATTGT 60.485 45.455 0.00 0.00 40.46 2.71
2989 13568 4.365514 TTGTTGTCATTCAAGCTAGGGA 57.634 40.909 0.00 0.00 36.66 4.20
2994 13573 5.755409 TGTCATTCAAGCTAGGGACTTTA 57.245 39.130 0.00 0.00 41.75 1.85
2995 13574 6.313519 TGTCATTCAAGCTAGGGACTTTAT 57.686 37.500 0.00 0.00 41.75 1.40
2996 13575 6.721318 TGTCATTCAAGCTAGGGACTTTATT 58.279 36.000 0.00 0.00 41.75 1.40
2997 13576 6.599244 TGTCATTCAAGCTAGGGACTTTATTG 59.401 38.462 0.00 0.00 41.75 1.90
2998 13577 5.590259 TCATTCAAGCTAGGGACTTTATTGC 59.410 40.000 0.00 0.00 41.75 3.56
2999 13578 4.568072 TCAAGCTAGGGACTTTATTGCA 57.432 40.909 0.00 0.00 41.75 4.08
3000 13579 4.261801 TCAAGCTAGGGACTTTATTGCAC 58.738 43.478 0.00 0.00 41.75 4.57
3001 13580 4.009675 CAAGCTAGGGACTTTATTGCACA 58.990 43.478 0.00 0.00 41.75 4.57
3002 13581 4.301072 AGCTAGGGACTTTATTGCACAA 57.699 40.909 0.00 0.00 41.75 3.33
3003 13582 4.265073 AGCTAGGGACTTTATTGCACAAG 58.735 43.478 0.00 0.00 41.75 3.16
3004 13583 3.378427 GCTAGGGACTTTATTGCACAAGG 59.622 47.826 0.00 0.00 41.75 3.61
3005 13584 2.171003 AGGGACTTTATTGCACAAGGC 58.829 47.619 0.00 0.00 38.55 4.35
3006 13585 3.458287 AGGGACTTTATTGCACAAGGCG 61.458 50.000 0.00 0.00 41.22 5.52
3024 13608 5.031066 AGGCGCCTTACTTGATACAATAA 57.969 39.130 27.08 0.00 0.00 1.40
3025 13611 5.621193 AGGCGCCTTACTTGATACAATAAT 58.379 37.500 27.08 0.00 0.00 1.28
3029 13615 8.175716 GGCGCCTTACTTGATACAATAATAATC 58.824 37.037 22.15 0.00 0.00 1.75
3086 13672 3.947196 TGCGGAAGTGATTGCTCATTAAT 59.053 39.130 0.00 0.00 32.98 1.40
3161 13747 5.036737 GCTTGTTTGTGATAATCCCAATCG 58.963 41.667 0.00 0.00 0.00 3.34
3169 13755 4.752101 GTGATAATCCCAATCGAGGAACAG 59.248 45.833 0.00 0.00 36.85 3.16
3174 13760 3.104512 TCCCAATCGAGGAACAGTACAT 58.895 45.455 0.00 0.00 0.00 2.29
3176 13762 4.341235 TCCCAATCGAGGAACAGTACATAG 59.659 45.833 0.00 0.00 0.00 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.141801 TGCCAAGTGTGACTGTTAGTTACT 60.142 41.667 5.64 0.00 35.92 2.24
3 4 3.275617 TGCCAAGTGTGACTGTTAGTT 57.724 42.857 0.00 0.00 0.00 2.24
4 5 3.275617 TTGCCAAGTGTGACTGTTAGT 57.724 42.857 0.00 0.00 0.00 2.24
66 4012 1.678627 TCTCTACTCCGCAGCAATCTC 59.321 52.381 0.00 0.00 0.00 2.75
67 4013 1.407258 GTCTCTACTCCGCAGCAATCT 59.593 52.381 0.00 0.00 0.00 2.40
68 4014 1.135139 TGTCTCTACTCCGCAGCAATC 59.865 52.381 0.00 0.00 0.00 2.67
69 4015 1.186200 TGTCTCTACTCCGCAGCAAT 58.814 50.000 0.00 0.00 0.00 3.56
111 4057 2.593978 CCAGCCCCAGTGGATCTG 59.406 66.667 11.95 16.11 43.27 2.90
122 4068 4.822628 GCTAACCCAGCCCAGCCC 62.823 72.222 0.00 0.00 45.23 5.19
163 4109 4.706962 ACAAAGCTTAGGCCCTTAATTCTG 59.293 41.667 0.00 0.00 39.73 3.02
250 6795 1.843851 AGAGGACGGGCCATTGAATTA 59.156 47.619 4.39 0.00 40.02 1.40
278 6843 3.305608 GGTTCAGGCATGTTTCTTCCTTG 60.306 47.826 0.00 0.00 0.00 3.61
282 6847 2.229784 CAGGGTTCAGGCATGTTTCTTC 59.770 50.000 0.00 0.00 0.00 2.87
425 10643 1.079888 CCGCTCATGTTTTTGGGCC 60.080 57.895 0.00 0.00 40.11 5.80
440 10683 3.226347 CGAGAGAATGTTGTTTTTCCGC 58.774 45.455 0.00 0.00 0.00 5.54
441 10684 3.226347 GCGAGAGAATGTTGTTTTTCCG 58.774 45.455 0.00 0.00 0.00 4.30
443 10686 3.565516 GGGCGAGAGAATGTTGTTTTTC 58.434 45.455 0.00 0.00 0.00 2.29
445 10688 1.886542 GGGGCGAGAGAATGTTGTTTT 59.113 47.619 0.00 0.00 0.00 2.43
447 10690 0.400213 TGGGGCGAGAGAATGTTGTT 59.600 50.000 0.00 0.00 0.00 2.83
448 10691 0.400213 TTGGGGCGAGAGAATGTTGT 59.600 50.000 0.00 0.00 0.00 3.32
450 10693 0.400213 TGTTGGGGCGAGAGAATGTT 59.600 50.000 0.00 0.00 0.00 2.71
451 10694 0.400213 TTGTTGGGGCGAGAGAATGT 59.600 50.000 0.00 0.00 0.00 2.71
452 10695 1.200020 GTTTGTTGGGGCGAGAGAATG 59.800 52.381 0.00 0.00 0.00 2.67
454 10697 0.536460 GGTTTGTTGGGGCGAGAGAA 60.536 55.000 0.00 0.00 0.00 2.87
455 10698 1.072505 GGTTTGTTGGGGCGAGAGA 59.927 57.895 0.00 0.00 0.00 3.10
456 10699 0.609131 ATGGTTTGTTGGGGCGAGAG 60.609 55.000 0.00 0.00 0.00 3.20
457 10700 0.693622 TATGGTTTGTTGGGGCGAGA 59.306 50.000 0.00 0.00 0.00 4.04
458 10701 1.201414 GTTATGGTTTGTTGGGGCGAG 59.799 52.381 0.00 0.00 0.00 5.03
459 10702 1.202952 AGTTATGGTTTGTTGGGGCGA 60.203 47.619 0.00 0.00 0.00 5.54
460 10703 1.253100 AGTTATGGTTTGTTGGGGCG 58.747 50.000 0.00 0.00 0.00 6.13
461 10704 3.366577 CGTAAGTTATGGTTTGTTGGGGC 60.367 47.826 0.00 0.00 0.00 5.80
462 10705 3.191791 CCGTAAGTTATGGTTTGTTGGGG 59.808 47.826 12.40 0.00 0.00 4.96
463 10706 3.822167 ACCGTAAGTTATGGTTTGTTGGG 59.178 43.478 19.35 0.00 45.63 4.12
472 10715 7.713507 TCCATCTTATTTGACCGTAAGTTATGG 59.286 37.037 18.05 18.05 40.77 2.74
473 10716 8.657074 TCCATCTTATTTGACCGTAAGTTATG 57.343 34.615 0.00 0.00 31.47 1.90
474 10717 9.675464 TTTCCATCTTATTTGACCGTAAGTTAT 57.325 29.630 0.00 0.00 31.47 1.89
475 10718 9.504708 TTTTCCATCTTATTTGACCGTAAGTTA 57.495 29.630 0.00 0.00 31.47 2.24
476 10719 7.989416 TTTCCATCTTATTTGACCGTAAGTT 57.011 32.000 0.00 0.00 31.47 2.66
477 10720 7.989416 TTTTCCATCTTATTTGACCGTAAGT 57.011 32.000 0.00 0.00 31.47 2.24
511 10754 2.995283 TCATGTTTGGAGCAGAGGATG 58.005 47.619 0.00 0.00 0.00 3.51
512 10755 3.618351 CTTCATGTTTGGAGCAGAGGAT 58.382 45.455 0.00 0.00 0.00 3.24
513 10756 2.290514 CCTTCATGTTTGGAGCAGAGGA 60.291 50.000 0.00 0.00 0.00 3.71
514 10757 2.089980 CCTTCATGTTTGGAGCAGAGG 58.910 52.381 0.00 0.00 0.00 3.69
515 10758 2.787994 ACCTTCATGTTTGGAGCAGAG 58.212 47.619 8.02 0.00 0.00 3.35
516 10759 2.886523 CAACCTTCATGTTTGGAGCAGA 59.113 45.455 8.02 0.00 0.00 4.26
517 10760 2.608752 GCAACCTTCATGTTTGGAGCAG 60.609 50.000 8.02 0.00 0.00 4.24
518 10761 1.340889 GCAACCTTCATGTTTGGAGCA 59.659 47.619 8.02 0.00 0.00 4.26
519 10762 1.666888 CGCAACCTTCATGTTTGGAGC 60.667 52.381 8.02 9.47 0.00 4.70
520 10763 1.879380 TCGCAACCTTCATGTTTGGAG 59.121 47.619 8.02 2.89 0.00 3.86
521 10764 1.974265 TCGCAACCTTCATGTTTGGA 58.026 45.000 8.02 0.12 0.00 3.53
522 10765 2.598589 CATCGCAACCTTCATGTTTGG 58.401 47.619 0.00 0.00 0.00 3.28
523 10766 1.987770 GCATCGCAACCTTCATGTTTG 59.012 47.619 0.00 0.00 0.00 2.93
524 10767 1.401409 CGCATCGCAACCTTCATGTTT 60.401 47.619 0.00 0.00 0.00 2.83
525 10768 0.168788 CGCATCGCAACCTTCATGTT 59.831 50.000 0.00 0.00 0.00 2.71
526 10769 1.796151 CGCATCGCAACCTTCATGT 59.204 52.632 0.00 0.00 0.00 3.21
527 10770 4.676444 CGCATCGCAACCTTCATG 57.324 55.556 0.00 0.00 0.00 3.07
538 10781 1.455030 GATTTGAGAGCTAGCGCATCG 59.545 52.381 20.99 0.00 39.10 3.84
539 10782 1.797635 GGATTTGAGAGCTAGCGCATC 59.202 52.381 20.99 13.53 39.10 3.91
540 10783 1.415659 AGGATTTGAGAGCTAGCGCAT 59.584 47.619 20.99 4.96 39.10 4.73
541 10784 0.826715 AGGATTTGAGAGCTAGCGCA 59.173 50.000 20.99 12.09 39.10 6.09
542 10785 1.068434 AGAGGATTTGAGAGCTAGCGC 59.932 52.381 10.88 10.88 0.00 5.92
543 10786 3.122297 CAAGAGGATTTGAGAGCTAGCG 58.878 50.000 9.55 0.00 0.00 4.26
544 10787 4.135747 ACAAGAGGATTTGAGAGCTAGC 57.864 45.455 6.62 6.62 0.00 3.42
545 10788 5.115480 GGAACAAGAGGATTTGAGAGCTAG 58.885 45.833 0.00 0.00 0.00 3.42
546 10789 4.532126 TGGAACAAGAGGATTTGAGAGCTA 59.468 41.667 0.00 0.00 31.92 3.32
547 10790 3.328931 TGGAACAAGAGGATTTGAGAGCT 59.671 43.478 0.00 0.00 31.92 4.09
548 10791 3.438434 GTGGAACAAGAGGATTTGAGAGC 59.562 47.826 0.00 0.00 44.16 4.09
549 10792 4.006319 GGTGGAACAAGAGGATTTGAGAG 58.994 47.826 0.00 0.00 44.16 3.20
550 10793 3.557054 CGGTGGAACAAGAGGATTTGAGA 60.557 47.826 0.00 0.00 44.16 3.27
551 10794 2.744202 CGGTGGAACAAGAGGATTTGAG 59.256 50.000 0.00 0.00 44.16 3.02
552 10795 2.778299 CGGTGGAACAAGAGGATTTGA 58.222 47.619 0.00 0.00 44.16 2.69
553 10796 1.200020 GCGGTGGAACAAGAGGATTTG 59.800 52.381 0.00 0.00 44.16 2.32
554 10797 1.534729 GCGGTGGAACAAGAGGATTT 58.465 50.000 0.00 0.00 44.16 2.17
555 10798 0.673644 CGCGGTGGAACAAGAGGATT 60.674 55.000 0.00 0.00 44.16 3.01
556 10799 1.079127 CGCGGTGGAACAAGAGGAT 60.079 57.895 0.00 0.00 44.16 3.24
557 10800 2.342279 CGCGGTGGAACAAGAGGA 59.658 61.111 0.00 0.00 44.16 3.71
558 10801 3.423154 GCGCGGTGGAACAAGAGG 61.423 66.667 8.83 0.00 44.16 3.69
559 10802 3.777925 CGCGCGGTGGAACAAGAG 61.778 66.667 24.84 0.00 44.16 2.85
564 10807 3.817274 AAAAAGCGCGCGGTGGAAC 62.817 57.895 36.63 15.52 0.00 3.62
565 10808 3.587933 AAAAAGCGCGCGGTGGAA 61.588 55.556 36.63 0.00 0.00 3.53
624 10870 0.611896 GGGTGGTGGTGAGGGATTTG 60.612 60.000 0.00 0.00 0.00 2.32
627 10873 3.009115 CGGGTGGTGGTGAGGGAT 61.009 66.667 0.00 0.00 0.00 3.85
628 10874 4.567597 ACGGGTGGTGGTGAGGGA 62.568 66.667 0.00 0.00 0.00 4.20
631 10877 3.299977 TCGACGGGTGGTGGTGAG 61.300 66.667 0.00 0.00 0.00 3.51
632 10878 3.608662 GTCGACGGGTGGTGGTGA 61.609 66.667 0.00 0.00 0.00 4.02
633 10879 4.675029 GGTCGACGGGTGGTGGTG 62.675 72.222 9.92 0.00 0.00 4.17
658 10904 4.458829 ATGGGAGGACGGCCGAGA 62.459 66.667 35.90 7.04 39.96 4.04
659 10905 3.917760 GATGGGAGGACGGCCGAG 61.918 72.222 35.90 3.42 39.96 4.63
660 10906 4.770362 TGATGGGAGGACGGCCGA 62.770 66.667 35.90 7.74 39.96 5.54
661 10907 4.530857 GTGATGGGAGGACGGCCG 62.531 72.222 26.86 26.86 39.96 6.13
662 10908 4.176752 GGTGATGGGAGGACGGCC 62.177 72.222 0.00 0.00 0.00 6.13
663 10909 3.399181 TGGTGATGGGAGGACGGC 61.399 66.667 0.00 0.00 0.00 5.68
664 10910 2.584608 GTGGTGATGGGAGGACGG 59.415 66.667 0.00 0.00 0.00 4.79
665 10911 2.584608 GGTGGTGATGGGAGGACG 59.415 66.667 0.00 0.00 0.00 4.79
666 10912 2.584608 CGGTGGTGATGGGAGGAC 59.415 66.667 0.00 0.00 0.00 3.85
667 10913 3.399181 GCGGTGGTGATGGGAGGA 61.399 66.667 0.00 0.00 0.00 3.71
668 10914 4.838152 CGCGGTGGTGATGGGAGG 62.838 72.222 0.00 0.00 0.00 4.30
669 10915 4.838152 CCGCGGTGGTGATGGGAG 62.838 72.222 19.50 0.00 0.00 4.30
688 10934 0.248215 CAAAATCGGCATCGTCAGGC 60.248 55.000 0.00 0.00 37.69 4.85
689 10935 1.328680 CTCAAAATCGGCATCGTCAGG 59.671 52.381 0.00 0.00 37.69 3.86
690 10936 1.267732 GCTCAAAATCGGCATCGTCAG 60.268 52.381 0.00 0.00 37.69 3.51
691 10937 0.726827 GCTCAAAATCGGCATCGTCA 59.273 50.000 0.00 0.00 37.69 4.35
692 10938 0.028110 GGCTCAAAATCGGCATCGTC 59.972 55.000 0.00 0.00 37.69 4.20
693 10939 0.676466 TGGCTCAAAATCGGCATCGT 60.676 50.000 0.00 0.00 37.69 3.73
694 10940 0.028505 CTGGCTCAAAATCGGCATCG 59.971 55.000 0.00 0.00 35.06 3.84
695 10941 1.332997 CTCTGGCTCAAAATCGGCATC 59.667 52.381 0.00 0.00 35.06 3.91
696 10942 1.386533 CTCTGGCTCAAAATCGGCAT 58.613 50.000 0.00 0.00 35.06 4.40
697 10943 0.677731 CCTCTGGCTCAAAATCGGCA 60.678 55.000 0.00 0.00 0.00 5.69
698 10944 1.379642 CCCTCTGGCTCAAAATCGGC 61.380 60.000 0.00 0.00 0.00 5.54
699 10945 0.253044 TCCCTCTGGCTCAAAATCGG 59.747 55.000 0.00 0.00 0.00 4.18
731 10980 1.600957 CAATGGCGATAGAGGCTTGTG 59.399 52.381 0.00 0.00 37.59 3.33
782 11031 1.070914 GATGCTAACTAGGGGGAGCAC 59.929 57.143 10.97 4.33 46.98 4.40
788 11037 2.288886 GCCGTTAGATGCTAACTAGGGG 60.289 54.545 13.54 9.17 0.00 4.79
819 11068 4.227134 CCGTCATCCTGGAGCGGG 62.227 72.222 21.76 9.47 38.86 6.13
886 11136 2.653557 GGAGGCAATCCGGTTGTTT 58.346 52.632 15.22 6.71 38.67 2.83
909 11159 0.400975 TGGTGGCGGCCTAAACTAAA 59.599 50.000 21.46 0.00 0.00 1.85
910 11160 0.321830 GTGGTGGCGGCCTAAACTAA 60.322 55.000 21.46 0.00 0.00 2.24
911 11161 1.297364 GTGGTGGCGGCCTAAACTA 59.703 57.895 21.46 5.18 0.00 2.24
912 11162 2.033602 GTGGTGGCGGCCTAAACT 59.966 61.111 21.46 0.00 0.00 2.66
913 11163 3.060000 GGTGGTGGCGGCCTAAAC 61.060 66.667 21.46 14.34 0.00 2.01
914 11164 3.571216 TGGTGGTGGCGGCCTAAA 61.571 61.111 21.46 2.05 0.00 1.85
915 11165 4.338710 GTGGTGGTGGCGGCCTAA 62.339 66.667 21.46 2.45 0.00 2.69
973 11518 0.319641 GACGGAGATGCGGTTATCCC 60.320 60.000 0.00 0.00 0.00 3.85
1785 12352 2.747460 TCGCTGATGGGCTTGCAC 60.747 61.111 0.00 0.00 0.00 4.57
1821 12388 0.317854 CGAAGATGCAGTCCGCGATA 60.318 55.000 8.23 0.00 46.97 2.92
2004 12573 1.689412 CCCCGGGAAAACCTTAGCT 59.311 57.895 26.32 0.00 36.97 3.32
2007 12576 1.381076 CAGCCCCGGGAAAACCTTA 59.619 57.895 26.32 0.00 36.97 2.69
2013 12582 3.962530 ATCCTCCAGCCCCGGGAAA 62.963 63.158 26.32 0.49 33.11 3.13
2248 12818 5.163457 CCCTACACTCTTGGCAAAAGAAAAA 60.163 40.000 7.72 0.00 0.00 1.94
2249 12819 4.340950 CCCTACACTCTTGGCAAAAGAAAA 59.659 41.667 7.72 0.00 0.00 2.29
2250 12820 3.888930 CCCTACACTCTTGGCAAAAGAAA 59.111 43.478 7.72 0.00 0.00 2.52
2253 12823 3.077359 CTCCCTACACTCTTGGCAAAAG 58.923 50.000 0.00 0.00 0.00 2.27
2337 12913 4.083484 CGGACGCTCCTAATGTTTTCTTTT 60.083 41.667 3.15 0.00 33.30 2.27
2340 12916 2.618053 CGGACGCTCCTAATGTTTTCT 58.382 47.619 3.15 0.00 33.30 2.52
2344 12920 1.153429 GCCGGACGCTCCTAATGTT 60.153 57.895 5.05 0.00 33.30 2.71
2376 12952 5.559770 TCTGTTTGATGTCTGATGGCTTTA 58.440 37.500 0.00 0.00 0.00 1.85
2378 12954 4.008330 CTCTGTTTGATGTCTGATGGCTT 58.992 43.478 0.00 0.00 0.00 4.35
2379 12955 3.008813 ACTCTGTTTGATGTCTGATGGCT 59.991 43.478 0.00 0.00 0.00 4.75
2380 12956 3.341823 ACTCTGTTTGATGTCTGATGGC 58.658 45.455 0.00 0.00 0.00 4.40
2381 12957 5.954296 AAACTCTGTTTGATGTCTGATGG 57.046 39.130 0.00 0.00 0.00 3.51
2383 12959 9.956720 CTTTTTAAACTCTGTTTGATGTCTGAT 57.043 29.630 6.01 0.00 0.00 2.90
2384 12960 7.915397 GCTTTTTAAACTCTGTTTGATGTCTGA 59.085 33.333 6.01 0.00 0.00 3.27
2385 12961 7.701924 TGCTTTTTAAACTCTGTTTGATGTCTG 59.298 33.333 6.01 0.00 0.00 3.51
2386 12962 7.771183 TGCTTTTTAAACTCTGTTTGATGTCT 58.229 30.769 6.01 0.00 0.00 3.41
2387 12963 7.915397 TCTGCTTTTTAAACTCTGTTTGATGTC 59.085 33.333 6.01 0.00 0.00 3.06
2388 12964 7.771183 TCTGCTTTTTAAACTCTGTTTGATGT 58.229 30.769 6.01 0.00 0.00 3.06
2397 12973 7.329717 CGTCATCTACTCTGCTTTTTAAACTCT 59.670 37.037 0.00 0.00 0.00 3.24
2418 12994 0.109086 CACGGACTTCTCAGCGTCAT 60.109 55.000 0.00 0.00 31.88 3.06
2419 12995 1.285950 CACGGACTTCTCAGCGTCA 59.714 57.895 0.00 0.00 31.88 4.35
2420 12996 1.444553 CCACGGACTTCTCAGCGTC 60.445 63.158 0.00 0.00 0.00 5.19
2422 12998 1.153939 CTCCACGGACTTCTCAGCG 60.154 63.158 0.00 0.00 0.00 5.18
2423 12999 0.389166 CACTCCACGGACTTCTCAGC 60.389 60.000 0.00 0.00 0.00 4.26
2424 13000 0.244994 CCACTCCACGGACTTCTCAG 59.755 60.000 0.00 0.00 0.00 3.35
2425 13001 1.816863 GCCACTCCACGGACTTCTCA 61.817 60.000 0.00 0.00 0.00 3.27
2426 13002 1.079750 GCCACTCCACGGACTTCTC 60.080 63.158 0.00 0.00 0.00 2.87
2428 13004 2.432628 CGCCACTCCACGGACTTC 60.433 66.667 0.00 0.00 0.00 3.01
2434 13010 3.573772 TTCTCAGCGCCACTCCACG 62.574 63.158 2.29 0.00 0.00 4.94
2436 13012 1.260538 ATCTTCTCAGCGCCACTCCA 61.261 55.000 2.29 0.00 0.00 3.86
2437 13013 0.809241 CATCTTCTCAGCGCCACTCC 60.809 60.000 2.29 0.00 0.00 3.85
2442 13018 2.520904 GCGTCATCTTCTCAGCGCC 61.521 63.158 2.29 0.00 39.11 6.53
2445 13021 1.427592 GGCAGCGTCATCTTCTCAGC 61.428 60.000 0.00 0.00 0.00 4.26
2446 13022 1.144565 CGGCAGCGTCATCTTCTCAG 61.145 60.000 0.00 0.00 0.00 3.35
2447 13023 1.153765 CGGCAGCGTCATCTTCTCA 60.154 57.895 0.00 0.00 0.00 3.27
2448 13024 2.520904 GCGGCAGCGTCATCTTCTC 61.521 63.158 0.00 0.00 0.00 2.87
2449 13025 2.510238 GCGGCAGCGTCATCTTCT 60.510 61.111 0.00 0.00 0.00 2.85
2462 13038 4.803426 CTCCACTCCTGACGCGGC 62.803 72.222 12.47 8.67 0.00 6.53
2463 13039 3.057547 CTCTCCACTCCTGACGCGG 62.058 68.421 12.47 0.00 0.00 6.46
2464 13040 2.487428 CTCTCCACTCCTGACGCG 59.513 66.667 3.53 3.53 0.00 6.01
2465 13041 2.183046 GCTCTCCACTCCTGACGC 59.817 66.667 0.00 0.00 0.00 5.19
2466 13042 2.716017 GGGCTCTCCACTCCTGACG 61.716 68.421 0.00 0.00 35.00 4.35
2467 13043 1.305718 AGGGCTCTCCACTCCTGAC 60.306 63.158 0.00 0.00 38.24 3.51
2468 13044 1.000993 GAGGGCTCTCCACTCCTGA 59.999 63.158 0.57 0.00 38.24 3.86
2469 13045 3.627690 GAGGGCTCTCCACTCCTG 58.372 66.667 0.57 0.00 38.24 3.86
2477 13053 3.213402 CGAGGACGGAGGGCTCTC 61.213 72.222 4.50 4.50 39.25 3.20
2478 13054 3.999297 GACGAGGACGGAGGGCTCT 62.999 68.421 0.00 0.00 44.46 4.09
2479 13055 3.519930 GACGAGGACGGAGGGCTC 61.520 72.222 0.00 0.00 44.46 4.70
2482 13058 3.203412 CTCGACGAGGACGGAGGG 61.203 72.222 17.27 0.00 44.46 4.30
2491 13067 2.351322 CGACATCGCCTCGACGAG 60.351 66.667 18.08 18.08 46.69 4.18
2493 13069 3.872728 TCCGACATCGCCTCGACG 61.873 66.667 0.00 0.00 39.18 5.12
2494 13070 2.278013 GTCCGACATCGCCTCGAC 60.278 66.667 0.00 0.00 39.18 4.20
2495 13071 2.748647 TGTCCGACATCGCCTCGA 60.749 61.111 0.00 0.00 41.13 4.04
2496 13072 2.278206 CTGTCCGACATCGCCTCG 60.278 66.667 0.62 0.00 38.18 4.63
2497 13073 2.105128 CCTGTCCGACATCGCCTC 59.895 66.667 0.62 0.00 38.18 4.70
2498 13074 3.461773 CCCTGTCCGACATCGCCT 61.462 66.667 0.62 0.00 38.18 5.52
2499 13075 4.530857 CCCCTGTCCGACATCGCC 62.531 72.222 0.62 0.00 38.18 5.54
2500 13076 3.014085 TTCCCCTGTCCGACATCGC 62.014 63.158 0.62 0.00 38.18 4.58
2501 13077 1.153628 GTTCCCCTGTCCGACATCG 60.154 63.158 0.62 0.00 39.44 3.84
2502 13078 1.153628 CGTTCCCCTGTCCGACATC 60.154 63.158 0.62 0.00 0.00 3.06
2503 13079 2.978824 CGTTCCCCTGTCCGACAT 59.021 61.111 0.62 0.00 0.00 3.06
2504 13080 3.998672 GCGTTCCCCTGTCCGACA 61.999 66.667 0.29 0.29 0.00 4.35
2505 13081 4.754667 GGCGTTCCCCTGTCCGAC 62.755 72.222 0.00 0.00 0.00 4.79
2527 13103 4.465512 CAGCGGCGTGGCATTGAC 62.466 66.667 9.37 0.00 34.64 3.18
2534 13110 2.892425 GAATCTCCAGCGGCGTGG 60.892 66.667 18.41 18.41 39.19 4.94
2535 13111 2.892425 GGAATCTCCAGCGGCGTG 60.892 66.667 9.37 5.60 36.28 5.34
2536 13112 3.077556 AGGAATCTCCAGCGGCGT 61.078 61.111 9.37 0.00 39.61 5.68
2537 13113 2.587194 CAGGAATCTCCAGCGGCG 60.587 66.667 0.51 0.51 39.61 6.46
2538 13114 2.899339 GCAGGAATCTCCAGCGGC 60.899 66.667 0.00 0.00 39.26 6.53
2552 13128 4.479993 CAGCCTTCCCCTCCGCAG 62.480 72.222 0.00 0.00 0.00 5.18
2555 13131 4.479993 CAGCAGCCTTCCCCTCCG 62.480 72.222 0.00 0.00 0.00 4.63
2556 13132 4.811364 GCAGCAGCCTTCCCCTCC 62.811 72.222 0.00 0.00 33.58 4.30
2559 13135 4.496336 ATCGCAGCAGCCTTCCCC 62.496 66.667 0.00 0.00 37.52 4.81
2560 13136 3.207669 CATCGCAGCAGCCTTCCC 61.208 66.667 0.00 0.00 37.52 3.97
2561 13137 3.885521 GCATCGCAGCAGCCTTCC 61.886 66.667 0.00 0.00 37.52 3.46
2562 13138 4.233635 CGCATCGCAGCAGCCTTC 62.234 66.667 0.00 0.00 37.52 3.46
2563 13139 4.765449 TCGCATCGCAGCAGCCTT 62.765 61.111 0.00 0.00 37.52 4.35
2566 13142 3.922893 GACTCGCATCGCAGCAGC 61.923 66.667 0.00 0.00 37.42 5.25
2567 13143 3.614659 CGACTCGCATCGCAGCAG 61.615 66.667 0.00 0.00 34.90 4.24
2568 13144 4.419939 ACGACTCGCATCGCAGCA 62.420 61.111 7.90 0.00 46.22 4.41
2569 13145 3.906649 CACGACTCGCATCGCAGC 61.907 66.667 7.90 0.00 46.22 5.25
2570 13146 2.202479 TCACGACTCGCATCGCAG 60.202 61.111 7.90 2.39 46.22 5.18
2571 13147 2.504026 GTCACGACTCGCATCGCA 60.504 61.111 7.90 0.00 46.22 5.10
2572 13148 2.202492 AGTCACGACTCGCATCGC 60.202 61.111 7.90 0.00 46.22 4.58
2574 13150 1.263776 CTTCAGTCACGACTCGCATC 58.736 55.000 0.00 0.00 40.20 3.91
2575 13151 0.734253 GCTTCAGTCACGACTCGCAT 60.734 55.000 0.00 0.00 40.20 4.73
2597 13173 2.554370 ATTTGCATGTTGCTTTGGCT 57.446 40.000 0.75 0.00 45.31 4.75
2620 13196 1.718757 GGAGCCTGCAATTGCTACGG 61.719 60.000 29.37 24.99 42.66 4.02
2623 13199 3.295585 TTATGGAGCCTGCAATTGCTA 57.704 42.857 29.37 15.63 42.66 3.49
2628 13204 4.713321 AGAACAAATTATGGAGCCTGCAAT 59.287 37.500 0.00 0.00 0.00 3.56
2661 13237 9.823647 TCTGGAACAAAATTATCTACAGAGATC 57.176 33.333 0.00 0.00 39.05 2.75
2674 13250 9.023962 TGAAGCATACTTATCTGGAACAAAATT 57.976 29.630 0.00 0.00 34.55 1.82
2676 13252 7.882791 TCTGAAGCATACTTATCTGGAACAAAA 59.117 33.333 0.00 0.00 34.55 2.44
2701 13277 8.607459 CAGAGAACTGTGATGTGGTAAATAATC 58.393 37.037 0.00 0.00 39.11 1.75
2746 13322 7.543172 GCATCTGCTTGAATGTTTTTCAGAATA 59.457 33.333 0.00 0.00 38.21 1.75
2762 13338 3.750130 ACTTCTGTTACTGCATCTGCTTG 59.250 43.478 3.53 0.00 42.66 4.01
2764 13340 3.692257 ACTTCTGTTACTGCATCTGCT 57.308 42.857 3.53 0.00 42.66 4.24
2793 13369 3.071892 AGGAACGGAGACACCAAAATACA 59.928 43.478 0.00 0.00 38.90 2.29
2795 13371 3.325425 TCAGGAACGGAGACACCAAAATA 59.675 43.478 0.00 0.00 38.90 1.40
2806 13382 1.546476 AGTAGCAGTTCAGGAACGGAG 59.454 52.381 14.97 7.09 45.50 4.63
2822 13398 5.049060 AGTGAATACAGATCGCTAGCAGTAG 60.049 44.000 16.45 2.59 35.96 2.57
2824 13400 3.634448 AGTGAATACAGATCGCTAGCAGT 59.366 43.478 16.45 1.43 35.96 4.40
2830 13406 2.950309 ACGGTAGTGAATACAGATCGCT 59.050 45.455 0.00 0.00 40.53 4.93
2832 13408 5.007430 ACTGTACGGTAGTGAATACAGATCG 59.993 44.000 5.26 0.00 44.81 3.69
2841 13417 3.569277 TGCAGTAACTGTACGGTAGTGAA 59.431 43.478 8.00 1.20 35.20 3.18
2847 13423 0.037605 GGCTGCAGTAACTGTACGGT 60.038 55.000 16.64 0.04 35.20 4.83
2848 13424 0.037697 TGGCTGCAGTAACTGTACGG 60.038 55.000 16.64 0.00 35.20 4.02
2849 13425 1.350193 CTGGCTGCAGTAACTGTACG 58.650 55.000 16.64 0.00 35.20 3.67
2871 13448 4.418973 AGTCTTGTGCTCATAGATGCAT 57.581 40.909 0.00 0.00 41.45 3.96
2942 13519 1.136891 GAACCAGCTTGGCAAGTTGTT 59.863 47.619 32.70 27.16 42.67 2.83
2945 13522 0.396974 TGGAACCAGCTTGGCAAGTT 60.397 50.000 26.71 19.60 42.67 2.66
2946 13523 0.396974 TTGGAACCAGCTTGGCAAGT 60.397 50.000 26.71 12.11 42.67 3.16
2947 13524 0.752054 TTTGGAACCAGCTTGGCAAG 59.248 50.000 22.75 22.75 42.67 4.01
2948 13525 1.198713 TTTTGGAACCAGCTTGGCAA 58.801 45.000 0.00 0.00 42.67 4.52
2955 13534 3.791245 TGACAACAATTTTGGAACCAGC 58.209 40.909 0.00 0.00 0.00 4.85
2961 13540 5.916318 AGCTTGAATGACAACAATTTTGGA 58.084 33.333 0.00 0.00 34.56 3.53
2971 13550 4.640771 AAGTCCCTAGCTTGAATGACAA 57.359 40.909 0.00 0.00 36.97 3.18
2989 13568 0.243636 GGCGCCTTGTGCAATAAAGT 59.756 50.000 22.15 0.00 41.25 2.66
2994 13573 0.609131 AGTAAGGCGCCTTGTGCAAT 60.609 50.000 44.36 25.75 41.25 3.56
2995 13574 0.821711 AAGTAAGGCGCCTTGTGCAA 60.822 50.000 44.36 26.43 41.25 4.08
2996 13575 1.228124 AAGTAAGGCGCCTTGTGCA 60.228 52.632 44.36 26.82 41.25 4.57
2997 13576 1.210155 CAAGTAAGGCGCCTTGTGC 59.790 57.895 44.36 32.94 37.47 4.57
2998 13577 1.453155 ATCAAGTAAGGCGCCTTGTG 58.547 50.000 44.36 35.83 39.25 3.33
2999 13578 2.027561 TGTATCAAGTAAGGCGCCTTGT 60.028 45.455 44.36 31.00 39.25 3.16
3000 13579 2.627945 TGTATCAAGTAAGGCGCCTTG 58.372 47.619 44.36 31.58 39.50 3.61
3001 13580 3.343941 TTGTATCAAGTAAGGCGCCTT 57.656 42.857 41.05 41.05 39.83 4.35
3002 13581 3.560636 ATTGTATCAAGTAAGGCGCCT 57.439 42.857 27.08 27.08 0.00 5.52
3003 13582 5.941948 ATTATTGTATCAAGTAAGGCGCC 57.058 39.130 21.89 21.89 0.00 6.53
3004 13583 8.717821 TGATTATTATTGTATCAAGTAAGGCGC 58.282 33.333 0.00 0.00 0.00 6.53
3029 13615 7.080099 GCCTTGTGCAGTGATATTGTATAATG 58.920 38.462 0.00 0.00 40.77 1.90
3032 13618 4.749598 CGCCTTGTGCAGTGATATTGTATA 59.250 41.667 0.00 0.00 41.33 1.47
3062 13648 1.825090 TGAGCAATCACTTCCGCAAT 58.175 45.000 0.00 0.00 0.00 3.56
3086 13672 5.069648 TGTTGTTCATCTTATTTGGGCACAA 59.930 36.000 0.00 0.00 34.07 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.