Multiple sequence alignment - TraesCS6A01G403400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G403400 chr6A 100.000 5535 0 0 1 5535 610804292 610798758 0.000000e+00 10222.0
1 TraesCS6A01G403400 chr6A 88.269 2421 259 17 2446 4852 610669035 610666626 0.000000e+00 2874.0
2 TraesCS6A01G403400 chr6A 88.230 2243 244 15 2367 4595 610654707 610652471 0.000000e+00 2662.0
3 TraesCS6A01G403400 chr6A 85.460 1066 126 14 799 1856 610670730 610669686 0.000000e+00 1083.0
4 TraesCS6A01G403400 chr6A 79.359 843 161 10 995 1826 614784854 614784014 1.030000e-161 580.0
5 TraesCS6A01G403400 chr6A 79.034 849 154 15 999 1826 614795162 614794317 1.350000e-155 560.0
6 TraesCS6A01G403400 chr6A 81.272 566 59 19 4363 4909 610592204 610591667 1.110000e-111 414.0
7 TraesCS6A01G403400 chr6A 89.051 274 28 2 24 296 29625977 29626249 6.870000e-89 339.0
8 TraesCS6A01G403400 chr6A 82.470 251 23 11 4996 5239 610591543 610591307 3.380000e-47 200.0
9 TraesCS6A01G403400 chr6A 79.558 181 18 9 5002 5178 610651889 610651724 1.630000e-20 111.0
10 TraesCS6A01G403400 chr6A 90.476 84 7 1 620 703 610670918 610670836 5.860000e-20 110.0
11 TraesCS6A01G403400 chr6A 80.272 147 17 8 4728 4869 610652114 610651975 3.530000e-17 100.0
12 TraesCS6A01G403400 chr6A 100.000 29 0 0 2291 2319 430517346 430517374 3.000000e-03 54.7
13 TraesCS6A01G403400 chr6B 93.460 3838 206 19 796 4607 707393108 707389290 0.000000e+00 5655.0
14 TraesCS6A01G403400 chr6B 92.265 2172 148 10 2438 4593 707940998 707938831 0.000000e+00 3062.0
15 TraesCS6A01G403400 chr6B 88.181 2259 222 19 2403 4652 707839790 707837568 0.000000e+00 2651.0
16 TraesCS6A01G403400 chr6B 86.989 1345 131 23 995 2310 707942470 707941141 0.000000e+00 1474.0
17 TraesCS6A01G403400 chr6B 88.493 869 100 0 984 1852 707960032 707959164 0.000000e+00 1051.0
18 TraesCS6A01G403400 chr6B 93.142 627 24 8 617 1226 707849811 707849187 0.000000e+00 902.0
19 TraesCS6A01G403400 chr6B 90.084 595 57 2 1279 1872 707729066 707728473 0.000000e+00 771.0
20 TraesCS6A01G403400 chr6B 86.421 707 56 16 4175 4868 707719877 707719198 0.000000e+00 737.0
21 TraesCS6A01G403400 chr6B 86.761 355 19 13 295 622 707393641 707393288 2.440000e-98 370.0
22 TraesCS6A01G403400 chr6B 87.361 269 20 5 4657 4925 707938818 707938564 4.190000e-76 296.0
23 TraesCS6A01G403400 chr6B 82.067 329 19 18 295 622 707850148 707849859 1.540000e-60 244.0
24 TraesCS6A01G403400 chr6B 80.833 240 25 5 5002 5238 707837155 707836934 9.540000e-38 169.0
25 TraesCS6A01G403400 chr6B 80.247 243 15 10 4723 4937 707837544 707837307 9.600000e-33 152.0
26 TraesCS6A01G403400 chr6B 80.085 236 21 7 5011 5239 707938425 707938209 9.600000e-33 152.0
27 TraesCS6A01G403400 chr6B 90.099 101 8 2 617 716 707393240 707393141 4.500000e-26 130.0
28 TraesCS6A01G403400 chr6B 89.899 99 9 1 2350 2447 707941138 707941040 5.820000e-25 126.0
29 TraesCS6A01G403400 chr6D 89.989 3746 301 37 799 4519 464177824 464174128 0.000000e+00 4772.0
30 TraesCS6A01G403400 chr6D 90.706 2507 180 17 2453 4937 464060487 464058012 0.000000e+00 3290.0
31 TraesCS6A01G403400 chr6D 89.397 1028 48 21 4521 5508 464174084 464173078 0.000000e+00 1238.0
32 TraesCS6A01G403400 chr6D 86.232 966 117 9 892 1856 464063968 464063018 0.000000e+00 1033.0
33 TraesCS6A01G403400 chr6D 83.901 323 31 10 305 622 464064584 464064278 7.020000e-74 289.0
34 TraesCS6A01G403400 chr6D 82.377 244 19 11 5002 5239 464057909 464057684 2.040000e-44 191.0
35 TraesCS6A01G403400 chr6D 86.585 82 7 4 648 728 464064217 464064139 2.750000e-13 87.9
36 TraesCS6A01G403400 chr6D 100.000 28 0 0 5506 5533 464173028 464173001 1.000000e-02 52.8
37 TraesCS6A01G403400 chrUn 91.765 2550 182 12 2081 4607 269564263 269566807 0.000000e+00 3520.0
38 TraesCS6A01G403400 chrUn 88.187 2438 235 24 2444 4862 246505584 246507987 0.000000e+00 2857.0
39 TraesCS6A01G403400 chrUn 88.105 2438 237 24 2444 4862 241206004 241208407 0.000000e+00 2846.0
40 TraesCS6A01G403400 chrUn 88.000 900 100 7 977 1872 241198028 241198923 0.000000e+00 1057.0
41 TraesCS6A01G403400 chrUn 87.811 804 92 5 977 1775 413962618 413963420 0.000000e+00 937.0
42 TraesCS6A01G403400 chrUn 89.347 704 73 2 1073 1775 469273741 469274443 0.000000e+00 883.0
43 TraesCS6A01G403400 chrUn 79.762 840 156 10 999 1825 331544489 331545327 1.030000e-166 597.0
44 TraesCS6A01G403400 chr4B 90.146 274 23 3 4969 5238 260119515 260119242 2.450000e-93 353.0
45 TraesCS6A01G403400 chr3D 90.110 273 22 4 4969 5237 206166613 206166342 3.170000e-92 350.0
46 TraesCS6A01G403400 chr3D 78.879 232 29 13 4723 4938 206167073 206166846 7.480000e-29 139.0
47 TraesCS6A01G403400 chr3D 100.000 29 0 0 2330 2358 566446309 566446337 3.000000e-03 54.7
48 TraesCS6A01G403400 chr7A 88.971 272 30 0 24 295 642090029 642089758 2.470000e-88 337.0
49 TraesCS6A01G403400 chr7A 88.235 272 32 0 24 295 84699752 84699481 5.350000e-85 326.0
50 TraesCS6A01G403400 chr3A 89.098 266 29 0 24 289 43141941 43142206 1.150000e-86 331.0
51 TraesCS6A01G403400 chr3A 100.000 31 0 0 1 31 36649288 36649258 2.150000e-04 58.4
52 TraesCS6A01G403400 chr3A 100.000 29 0 0 1 29 676907632 676907660 3.000000e-03 54.7
53 TraesCS6A01G403400 chr3A 100.000 28 0 0 1 28 508138381 508138408 1.000000e-02 52.8
54 TraesCS6A01G403400 chr2A 88.278 273 32 0 24 296 650625749 650626021 1.490000e-85 327.0
55 TraesCS6A01G403400 chr2A 87.546 273 34 0 24 296 672451021 672450749 3.220000e-82 316.0
56 TraesCS6A01G403400 chr2A 100.000 29 0 0 1 29 230807430 230807402 3.000000e-03 54.7
57 TraesCS6A01G403400 chr1A 88.321 274 30 2 24 296 549328346 549328618 1.490000e-85 327.0
58 TraesCS6A01G403400 chr7B 87.226 274 31 3 4969 5238 366779264 366779537 5.390000e-80 309.0
59 TraesCS6A01G403400 chr5A 86.861 274 34 2 24 296 395903979 395903707 6.970000e-79 305.0
60 TraesCS6A01G403400 chr5A 100.000 29 0 0 2292 2320 485609118 485609090 3.000000e-03 54.7
61 TraesCS6A01G403400 chr1D 86.813 273 36 0 24 296 2136778 2136506 6.970000e-79 305.0
62 TraesCS6A01G403400 chr1B 100.000 32 0 0 2290 2321 25807665 25807634 5.990000e-05 60.2
63 TraesCS6A01G403400 chr1B 100.000 29 0 0 1 29 420993200 420993228 3.000000e-03 54.7
64 TraesCS6A01G403400 chr1B 94.118 34 2 0 2286 2319 17542300 17542333 1.000000e-02 52.8
65 TraesCS6A01G403400 chr3B 100.000 31 0 0 1 31 423813490 423813520 2.150000e-04 58.4
66 TraesCS6A01G403400 chr4D 100.000 29 0 0 2293 2321 469615219 469615191 3.000000e-03 54.7
67 TraesCS6A01G403400 chr5B 100.000 28 0 0 4 31 298180204 298180177 1.000000e-02 52.8
68 TraesCS6A01G403400 chr5B 94.118 34 2 0 2286 2319 518316770 518316803 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G403400 chr6A 610798758 610804292 5534 True 10222.000000 10222 100.000000 1 5535 1 chr6A.!!$R1 5534
1 TraesCS6A01G403400 chr6A 610666626 610670918 4292 True 1355.666667 2874 88.068333 620 4852 3 chr6A.!!$R6 4232
2 TraesCS6A01G403400 chr6A 610651724 610654707 2983 True 957.666667 2662 82.686667 2367 5178 3 chr6A.!!$R5 2811
3 TraesCS6A01G403400 chr6A 614784014 614784854 840 True 580.000000 580 79.359000 995 1826 1 chr6A.!!$R2 831
4 TraesCS6A01G403400 chr6A 614794317 614795162 845 True 560.000000 560 79.034000 999 1826 1 chr6A.!!$R3 827
5 TraesCS6A01G403400 chr6A 610591307 610592204 897 True 307.000000 414 81.871000 4363 5239 2 chr6A.!!$R4 876
6 TraesCS6A01G403400 chr6B 707389290 707393641 4351 True 2051.666667 5655 90.106667 295 4607 3 chr6B.!!$R4 4312
7 TraesCS6A01G403400 chr6B 707959164 707960032 868 True 1051.000000 1051 88.493000 984 1852 1 chr6B.!!$R3 868
8 TraesCS6A01G403400 chr6B 707938209 707942470 4261 True 1022.000000 3062 87.319800 995 5239 5 chr6B.!!$R7 4244
9 TraesCS6A01G403400 chr6B 707836934 707839790 2856 True 990.666667 2651 83.087000 2403 5238 3 chr6B.!!$R5 2835
10 TraesCS6A01G403400 chr6B 707728473 707729066 593 True 771.000000 771 90.084000 1279 1872 1 chr6B.!!$R2 593
11 TraesCS6A01G403400 chr6B 707719198 707719877 679 True 737.000000 737 86.421000 4175 4868 1 chr6B.!!$R1 693
12 TraesCS6A01G403400 chr6B 707849187 707850148 961 True 573.000000 902 87.604500 295 1226 2 chr6B.!!$R6 931
13 TraesCS6A01G403400 chr6D 464173001 464177824 4823 True 2020.933333 4772 93.128667 799 5533 3 chr6D.!!$R2 4734
14 TraesCS6A01G403400 chr6D 464057684 464064584 6900 True 978.180000 3290 85.960200 305 5239 5 chr6D.!!$R1 4934
15 TraesCS6A01G403400 chrUn 269564263 269566807 2544 False 3520.000000 3520 91.765000 2081 4607 1 chrUn.!!$F4 2526
16 TraesCS6A01G403400 chrUn 246505584 246507987 2403 False 2857.000000 2857 88.187000 2444 4862 1 chrUn.!!$F3 2418
17 TraesCS6A01G403400 chrUn 241206004 241208407 2403 False 2846.000000 2846 88.105000 2444 4862 1 chrUn.!!$F2 2418
18 TraesCS6A01G403400 chrUn 241198028 241198923 895 False 1057.000000 1057 88.000000 977 1872 1 chrUn.!!$F1 895
19 TraesCS6A01G403400 chrUn 413962618 413963420 802 False 937.000000 937 87.811000 977 1775 1 chrUn.!!$F6 798
20 TraesCS6A01G403400 chrUn 469273741 469274443 702 False 883.000000 883 89.347000 1073 1775 1 chrUn.!!$F7 702
21 TraesCS6A01G403400 chrUn 331544489 331545327 838 False 597.000000 597 79.762000 999 1825 1 chrUn.!!$F5 826
22 TraesCS6A01G403400 chr3D 206166342 206167073 731 True 244.500000 350 84.494500 4723 5237 2 chr3D.!!$R1 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
557 576 0.107752 GAGAGCAAGCTCCCTCAAGG 60.108 60.000 17.81 0.0 43.70 3.61 F
855 1045 0.321741 TTCTCAAATTACGGCCGGCA 60.322 50.000 31.76 16.3 0.00 5.69 F
991 1219 0.532573 CGTGTCTCAGGTAGCACCAT 59.467 55.000 7.86 0.0 41.95 3.55 F
2307 4681 1.135199 GCATGTACTTCCTCCGTTCGA 60.135 52.381 0.00 0.0 0.00 3.71 F
3678 6144 1.998315 CAATCTCAAGAGACTGGTGCG 59.002 52.381 1.20 0.0 40.75 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1992 2321 0.100861 CTTTCGGGTACGCTCTCTCC 59.899 60.000 8.43 0.00 40.69 3.71 R
2412 4800 1.728971 CCTGTAAGAAAGCTGACGCAG 59.271 52.381 0.00 2.92 35.04 5.18 R
3259 5725 7.093992 CCACCAAAGTAACAAAGTTTTCTTCA 58.906 34.615 0.00 0.00 39.48 3.02 R
3846 6330 0.251354 AGCATTCACTCGGTCAGCAT 59.749 50.000 0.00 0.00 0.00 3.79 R
5359 8504 1.276421 CCCTTGTTCTGGATCGTCACT 59.724 52.381 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.990163 TTTGGAATGGAGGGAGTATTAAATAC 57.010 34.615 0.00 0.00 35.99 1.89
32 33 7.086685 TGGAATGGAGGGAGTATTAAATACC 57.913 40.000 0.00 0.00 36.40 2.73
33 34 6.855061 TGGAATGGAGGGAGTATTAAATACCT 59.145 38.462 0.00 0.00 36.40 3.08
34 35 7.352522 TGGAATGGAGGGAGTATTAAATACCTT 59.647 37.037 0.00 0.00 36.40 3.50
35 36 8.887393 GGAATGGAGGGAGTATTAAATACCTTA 58.113 37.037 0.00 0.00 36.40 2.69
36 37 9.945904 GAATGGAGGGAGTATTAAATACCTTAG 57.054 37.037 0.00 0.00 36.40 2.18
37 38 7.312415 TGGAGGGAGTATTAAATACCTTAGC 57.688 40.000 0.00 0.00 36.40 3.09
38 39 6.847567 TGGAGGGAGTATTAAATACCTTAGCA 59.152 38.462 0.00 0.00 36.40 3.49
39 40 7.348801 TGGAGGGAGTATTAAATACCTTAGCAA 59.651 37.037 0.00 0.00 36.40 3.91
40 41 7.878644 GGAGGGAGTATTAAATACCTTAGCAAG 59.121 40.741 0.00 0.00 36.40 4.01
41 42 8.333226 AGGGAGTATTAAATACCTTAGCAAGT 57.667 34.615 0.00 0.00 36.40 3.16
42 43 8.430431 AGGGAGTATTAAATACCTTAGCAAGTC 58.570 37.037 0.00 0.00 36.40 3.01
43 44 8.208903 GGGAGTATTAAATACCTTAGCAAGTCA 58.791 37.037 0.00 0.00 36.40 3.41
44 45 9.609346 GGAGTATTAAATACCTTAGCAAGTCAA 57.391 33.333 0.00 0.00 36.40 3.18
49 50 8.773404 TTAAATACCTTAGCAAGTCAACTCTC 57.227 34.615 0.00 0.00 0.00 3.20
50 51 3.686916 ACCTTAGCAAGTCAACTCTCC 57.313 47.619 0.00 0.00 0.00 3.71
51 52 2.972713 ACCTTAGCAAGTCAACTCTCCA 59.027 45.455 0.00 0.00 0.00 3.86
52 53 3.391296 ACCTTAGCAAGTCAACTCTCCAA 59.609 43.478 0.00 0.00 0.00 3.53
53 54 4.042187 ACCTTAGCAAGTCAACTCTCCAAT 59.958 41.667 0.00 0.00 0.00 3.16
54 55 4.394300 CCTTAGCAAGTCAACTCTCCAATG 59.606 45.833 0.00 0.00 0.00 2.82
55 56 2.157738 AGCAAGTCAACTCTCCAATGC 58.842 47.619 0.00 0.00 0.00 3.56
56 57 1.881973 GCAAGTCAACTCTCCAATGCA 59.118 47.619 0.00 0.00 33.00 3.96
57 58 2.490903 GCAAGTCAACTCTCCAATGCAT 59.509 45.455 0.00 0.00 33.00 3.96
58 59 3.691118 GCAAGTCAACTCTCCAATGCATA 59.309 43.478 0.00 0.00 33.00 3.14
59 60 4.156556 GCAAGTCAACTCTCCAATGCATAA 59.843 41.667 0.00 0.00 33.00 1.90
60 61 5.675575 GCAAGTCAACTCTCCAATGCATAAG 60.676 44.000 0.00 0.00 33.00 1.73
61 62 5.171339 AGTCAACTCTCCAATGCATAAGT 57.829 39.130 0.00 0.00 0.00 2.24
62 63 4.940046 AGTCAACTCTCCAATGCATAAGTG 59.060 41.667 0.00 2.10 0.00 3.16
83 84 8.797266 AAGTGCTTAATTTGTTGTTACTAAGC 57.203 30.769 4.99 4.99 40.91 3.09
84 85 7.936584 AGTGCTTAATTTGTTGTTACTAAGCA 58.063 30.769 9.59 9.59 45.32 3.91
86 87 7.708051 TGCTTAATTTGTTGTTACTAAGCACA 58.292 30.769 9.59 0.00 43.67 4.57
87 88 8.356657 TGCTTAATTTGTTGTTACTAAGCACAT 58.643 29.630 9.59 0.00 43.67 3.21
88 89 9.191995 GCTTAATTTGTTGTTACTAAGCACATT 57.808 29.630 6.73 0.00 40.47 2.71
128 129 7.161773 ACACTTAATGTCTTTCATGGATTGG 57.838 36.000 0.00 0.00 36.54 3.16
129 130 6.721208 ACACTTAATGTCTTTCATGGATTGGT 59.279 34.615 0.00 0.00 36.54 3.67
130 131 7.094205 ACACTTAATGTCTTTCATGGATTGGTC 60.094 37.037 0.00 0.00 36.54 4.02
131 132 6.947733 ACTTAATGTCTTTCATGGATTGGTCA 59.052 34.615 0.00 0.00 36.81 4.02
132 133 7.451255 ACTTAATGTCTTTCATGGATTGGTCAA 59.549 33.333 0.00 0.00 36.81 3.18
133 134 6.669125 AATGTCTTTCATGGATTGGTCAAA 57.331 33.333 0.00 0.00 36.81 2.69
134 135 6.862469 ATGTCTTTCATGGATTGGTCAAAT 57.138 33.333 0.00 0.00 35.19 2.32
135 136 6.669125 TGTCTTTCATGGATTGGTCAAATT 57.331 33.333 0.00 0.00 0.00 1.82
136 137 6.457355 TGTCTTTCATGGATTGGTCAAATTG 58.543 36.000 0.00 0.00 0.00 2.32
137 138 6.041865 TGTCTTTCATGGATTGGTCAAATTGT 59.958 34.615 0.00 0.00 0.00 2.71
138 139 6.930722 GTCTTTCATGGATTGGTCAAATTGTT 59.069 34.615 0.00 0.00 0.00 2.83
139 140 7.442062 GTCTTTCATGGATTGGTCAAATTGTTT 59.558 33.333 0.00 0.00 0.00 2.83
140 141 7.656948 TCTTTCATGGATTGGTCAAATTGTTTC 59.343 33.333 0.00 0.00 0.00 2.78
141 142 6.416631 TCATGGATTGGTCAAATTGTTTCA 57.583 33.333 0.00 0.00 0.00 2.69
142 143 7.006865 TCATGGATTGGTCAAATTGTTTCAT 57.993 32.000 0.00 0.00 0.00 2.57
143 144 7.451732 TCATGGATTGGTCAAATTGTTTCATT 58.548 30.769 0.00 0.00 0.00 2.57
144 145 7.937942 TCATGGATTGGTCAAATTGTTTCATTT 59.062 29.630 0.00 0.00 0.00 2.32
145 146 9.217278 CATGGATTGGTCAAATTGTTTCATTTA 57.783 29.630 0.00 0.00 0.00 1.40
146 147 9.790344 ATGGATTGGTCAAATTGTTTCATTTAA 57.210 25.926 0.00 0.00 0.00 1.52
147 148 9.270640 TGGATTGGTCAAATTGTTTCATTTAAG 57.729 29.630 0.00 0.00 0.00 1.85
148 149 9.271828 GGATTGGTCAAATTGTTTCATTTAAGT 57.728 29.630 0.00 0.00 0.00 2.24
150 151 8.430801 TTGGTCAAATTGTTTCATTTAAGTGG 57.569 30.769 0.00 0.00 0.00 4.00
151 152 7.560368 TGGTCAAATTGTTTCATTTAAGTGGT 58.440 30.769 0.00 0.00 0.00 4.16
152 153 8.043710 TGGTCAAATTGTTTCATTTAAGTGGTT 58.956 29.630 0.00 0.00 0.00 3.67
153 154 8.888716 GGTCAAATTGTTTCATTTAAGTGGTTT 58.111 29.630 0.00 0.00 0.00 3.27
154 155 9.701355 GTCAAATTGTTTCATTTAAGTGGTTTG 57.299 29.630 0.00 0.00 0.00 2.93
155 156 8.394121 TCAAATTGTTTCATTTAAGTGGTTTGC 58.606 29.630 0.00 0.00 0.00 3.68
156 157 8.397148 CAAATTGTTTCATTTAAGTGGTTTGCT 58.603 29.630 0.00 0.00 0.00 3.91
157 158 8.504812 AATTGTTTCATTTAAGTGGTTTGCTT 57.495 26.923 0.00 0.00 0.00 3.91
158 159 9.606631 AATTGTTTCATTTAAGTGGTTTGCTTA 57.393 25.926 0.00 0.00 0.00 3.09
159 160 8.641499 TTGTTTCATTTAAGTGGTTTGCTTAG 57.359 30.769 0.00 0.00 31.13 2.18
160 161 7.206687 TGTTTCATTTAAGTGGTTTGCTTAGG 58.793 34.615 0.00 0.00 31.13 2.69
161 162 6.969993 TTCATTTAAGTGGTTTGCTTAGGT 57.030 33.333 0.00 0.00 31.13 3.08
162 163 6.969993 TCATTTAAGTGGTTTGCTTAGGTT 57.030 33.333 0.00 0.00 31.13 3.50
163 164 6.977213 TCATTTAAGTGGTTTGCTTAGGTTC 58.023 36.000 0.00 0.00 31.13 3.62
164 165 6.775629 TCATTTAAGTGGTTTGCTTAGGTTCT 59.224 34.615 0.00 0.00 31.13 3.01
165 166 6.628919 TTTAAGTGGTTTGCTTAGGTTCTC 57.371 37.500 0.00 0.00 31.13 2.87
166 167 2.767505 AGTGGTTTGCTTAGGTTCTCG 58.232 47.619 0.00 0.00 0.00 4.04
167 168 1.197036 GTGGTTTGCTTAGGTTCTCGC 59.803 52.381 0.00 0.00 0.00 5.03
168 169 0.442699 GGTTTGCTTAGGTTCTCGCG 59.557 55.000 0.00 0.00 0.00 5.87
169 170 0.179222 GTTTGCTTAGGTTCTCGCGC 60.179 55.000 0.00 0.00 0.00 6.86
170 171 0.320421 TTTGCTTAGGTTCTCGCGCT 60.320 50.000 5.56 0.00 0.00 5.92
171 172 0.320421 TTGCTTAGGTTCTCGCGCTT 60.320 50.000 5.56 0.00 0.00 4.68
172 173 1.014044 TGCTTAGGTTCTCGCGCTTG 61.014 55.000 5.56 0.00 0.00 4.01
173 174 1.696832 GCTTAGGTTCTCGCGCTTGG 61.697 60.000 5.56 0.00 0.00 3.61
174 175 1.696832 CTTAGGTTCTCGCGCTTGGC 61.697 60.000 5.56 0.00 38.69 4.52
175 176 2.443260 TTAGGTTCTCGCGCTTGGCA 62.443 55.000 5.56 0.00 43.84 4.92
176 177 2.238847 TAGGTTCTCGCGCTTGGCAT 62.239 55.000 5.56 0.00 43.84 4.40
177 178 2.690778 GGTTCTCGCGCTTGGCATT 61.691 57.895 5.56 0.00 43.84 3.56
178 179 1.512734 GTTCTCGCGCTTGGCATTG 60.513 57.895 5.56 0.00 43.84 2.82
179 180 1.670730 TTCTCGCGCTTGGCATTGA 60.671 52.632 5.56 0.00 43.84 2.57
180 181 1.026182 TTCTCGCGCTTGGCATTGAT 61.026 50.000 5.56 0.00 43.84 2.57
181 182 1.026182 TCTCGCGCTTGGCATTGATT 61.026 50.000 5.56 0.00 43.84 2.57
182 183 0.590732 CTCGCGCTTGGCATTGATTC 60.591 55.000 5.56 0.00 43.84 2.52
183 184 1.026182 TCGCGCTTGGCATTGATTCT 61.026 50.000 5.56 0.00 43.84 2.40
184 185 0.179156 CGCGCTTGGCATTGATTCTT 60.179 50.000 5.56 0.00 43.84 2.52
185 186 1.553308 GCGCTTGGCATTGATTCTTC 58.447 50.000 0.00 0.00 42.87 2.87
186 187 1.135315 GCGCTTGGCATTGATTCTTCA 60.135 47.619 0.00 0.00 42.87 3.02
187 188 2.480759 GCGCTTGGCATTGATTCTTCAT 60.481 45.455 0.00 0.00 42.87 2.57
188 189 3.243168 GCGCTTGGCATTGATTCTTCATA 60.243 43.478 0.00 0.00 42.87 2.15
189 190 4.534168 CGCTTGGCATTGATTCTTCATAG 58.466 43.478 0.00 0.00 0.00 2.23
190 191 4.274214 CGCTTGGCATTGATTCTTCATAGA 59.726 41.667 0.00 0.00 0.00 1.98
191 192 5.560375 CGCTTGGCATTGATTCTTCATAGAG 60.560 44.000 0.00 0.00 0.00 2.43
192 193 5.298777 GCTTGGCATTGATTCTTCATAGAGT 59.701 40.000 0.00 0.00 0.00 3.24
193 194 6.513066 GCTTGGCATTGATTCTTCATAGAGTC 60.513 42.308 0.00 0.00 37.58 3.36
194 195 5.993055 TGGCATTGATTCTTCATAGAGTCA 58.007 37.500 0.00 0.00 43.08 3.41
195 196 6.598503 TGGCATTGATTCTTCATAGAGTCAT 58.401 36.000 1.92 0.00 43.86 3.06
196 197 6.709397 TGGCATTGATTCTTCATAGAGTCATC 59.291 38.462 1.92 0.00 43.86 2.92
197 198 6.709397 GGCATTGATTCTTCATAGAGTCATCA 59.291 38.462 1.92 0.00 43.86 3.07
198 199 7.228108 GGCATTGATTCTTCATAGAGTCATCAA 59.772 37.037 1.92 3.22 43.86 2.57
199 200 8.618677 GCATTGATTCTTCATAGAGTCATCAAA 58.381 33.333 1.92 0.00 43.86 2.69
201 202 9.902684 ATTGATTCTTCATAGAGTCATCAAAGT 57.097 29.630 1.92 0.00 43.86 2.66
202 203 8.713737 TGATTCTTCATAGAGTCATCAAAGTG 57.286 34.615 0.00 0.00 40.83 3.16
203 204 6.974932 TTCTTCATAGAGTCATCAAAGTGC 57.025 37.500 0.00 0.00 0.00 4.40
204 205 6.291648 TCTTCATAGAGTCATCAAAGTGCT 57.708 37.500 0.00 0.00 0.00 4.40
205 206 6.336566 TCTTCATAGAGTCATCAAAGTGCTC 58.663 40.000 0.00 0.00 0.00 4.26
206 207 5.929058 TCATAGAGTCATCAAAGTGCTCT 57.071 39.130 0.00 0.00 36.88 4.09
207 208 5.900425 TCATAGAGTCATCAAAGTGCTCTC 58.100 41.667 0.00 0.00 35.61 3.20
208 209 5.655974 TCATAGAGTCATCAAAGTGCTCTCT 59.344 40.000 0.00 0.00 35.61 3.10
209 210 4.454728 AGAGTCATCAAAGTGCTCTCTC 57.545 45.455 0.00 0.00 31.52 3.20
210 211 3.195396 AGAGTCATCAAAGTGCTCTCTCC 59.805 47.826 0.00 0.00 31.52 3.71
211 212 2.235898 AGTCATCAAAGTGCTCTCTCCC 59.764 50.000 0.00 0.00 0.00 4.30
212 213 1.556911 TCATCAAAGTGCTCTCTCCCC 59.443 52.381 0.00 0.00 0.00 4.81
213 214 1.558756 CATCAAAGTGCTCTCTCCCCT 59.441 52.381 0.00 0.00 0.00 4.79
214 215 2.623418 TCAAAGTGCTCTCTCCCCTA 57.377 50.000 0.00 0.00 0.00 3.53
215 216 3.121929 TCAAAGTGCTCTCTCCCCTAT 57.878 47.619 0.00 0.00 0.00 2.57
216 217 3.454858 TCAAAGTGCTCTCTCCCCTATT 58.545 45.455 0.00 0.00 0.00 1.73
217 218 3.846588 TCAAAGTGCTCTCTCCCCTATTT 59.153 43.478 0.00 0.00 0.00 1.40
218 219 5.030147 TCAAAGTGCTCTCTCCCCTATTTA 58.970 41.667 0.00 0.00 0.00 1.40
219 220 5.487488 TCAAAGTGCTCTCTCCCCTATTTAA 59.513 40.000 0.00 0.00 0.00 1.52
220 221 6.012858 TCAAAGTGCTCTCTCCCCTATTTAAA 60.013 38.462 0.00 0.00 0.00 1.52
221 222 6.582929 AAGTGCTCTCTCCCCTATTTAAAT 57.417 37.500 5.89 5.89 0.00 1.40
222 223 7.691993 AAGTGCTCTCTCCCCTATTTAAATA 57.308 36.000 7.66 7.66 0.00 1.40
223 224 7.691993 AGTGCTCTCTCCCCTATTTAAATAA 57.308 36.000 9.15 0.00 0.00 1.40
224 225 8.281529 AGTGCTCTCTCCCCTATTTAAATAAT 57.718 34.615 9.15 0.00 0.00 1.28
225 226 8.160106 AGTGCTCTCTCCCCTATTTAAATAATG 58.840 37.037 9.15 3.95 0.00 1.90
226 227 7.939588 GTGCTCTCTCCCCTATTTAAATAATGT 59.060 37.037 9.15 0.00 0.00 2.71
227 228 9.166222 TGCTCTCTCCCCTATTTAAATAATGTA 57.834 33.333 9.15 0.00 0.00 2.29
228 229 9.438228 GCTCTCTCCCCTATTTAAATAATGTAC 57.562 37.037 9.15 0.00 0.00 2.90
229 230 9.945904 CTCTCTCCCCTATTTAAATAATGTACC 57.054 37.037 9.15 0.00 0.00 3.34
230 231 9.455144 TCTCTCCCCTATTTAAATAATGTACCA 57.545 33.333 9.15 0.00 0.00 3.25
233 234 9.807921 CTCCCCTATTTAAATAATGTACCATGT 57.192 33.333 9.15 0.00 0.00 3.21
234 235 9.802039 TCCCCTATTTAAATAATGTACCATGTC 57.198 33.333 9.15 0.00 0.00 3.06
235 236 9.581289 CCCCTATTTAAATAATGTACCATGTCA 57.419 33.333 9.15 0.00 0.00 3.58
257 258 9.571810 TGTCATTTTTCTGTTTATATGACATGC 57.428 29.630 10.64 0.00 43.88 4.06
258 259 9.793252 GTCATTTTTCTGTTTATATGACATGCT 57.207 29.630 0.00 0.00 40.77 3.79
262 263 9.787532 TTTTTCTGTTTATATGACATGCTTAGC 57.212 29.630 0.00 0.00 0.00 3.09
263 264 8.504812 TTTCTGTTTATATGACATGCTTAGCA 57.495 30.769 10.09 10.09 44.86 3.49
277 278 3.947196 TGCTTAGCATCTGTTTATGGTGG 59.053 43.478 1.39 0.00 38.05 4.61
278 279 4.199310 GCTTAGCATCTGTTTATGGTGGA 58.801 43.478 0.00 0.00 38.05 4.02
279 280 4.274459 GCTTAGCATCTGTTTATGGTGGAG 59.726 45.833 0.00 0.00 38.05 3.86
280 281 2.648059 AGCATCTGTTTATGGTGGAGC 58.352 47.619 0.00 0.00 36.28 4.70
281 282 2.025981 AGCATCTGTTTATGGTGGAGCA 60.026 45.455 0.00 0.00 36.28 4.26
282 283 2.098117 GCATCTGTTTATGGTGGAGCAC 59.902 50.000 0.00 0.00 0.00 4.40
283 284 3.614092 CATCTGTTTATGGTGGAGCACT 58.386 45.455 0.00 0.00 34.40 4.40
284 285 3.057969 TCTGTTTATGGTGGAGCACTG 57.942 47.619 0.00 0.00 34.40 3.66
285 286 2.637382 TCTGTTTATGGTGGAGCACTGA 59.363 45.455 0.00 0.00 34.40 3.41
286 287 3.005554 CTGTTTATGGTGGAGCACTGAG 58.994 50.000 0.00 0.00 34.40 3.35
287 288 2.637382 TGTTTATGGTGGAGCACTGAGA 59.363 45.455 0.00 0.00 34.40 3.27
288 289 3.072330 TGTTTATGGTGGAGCACTGAGAA 59.928 43.478 0.00 0.00 34.40 2.87
289 290 4.072131 GTTTATGGTGGAGCACTGAGAAA 58.928 43.478 0.00 0.00 34.40 2.52
290 291 2.957402 ATGGTGGAGCACTGAGAAAA 57.043 45.000 0.00 0.00 34.40 2.29
291 292 2.260844 TGGTGGAGCACTGAGAAAAG 57.739 50.000 0.00 0.00 34.40 2.27
292 293 0.877743 GGTGGAGCACTGAGAAAAGC 59.122 55.000 0.00 0.00 34.40 3.51
293 294 0.877743 GTGGAGCACTGAGAAAAGCC 59.122 55.000 0.00 0.00 0.00 4.35
338 343 4.432980 GGCCTCCAAGTAGCCTATTAAA 57.567 45.455 0.00 0.00 43.62 1.52
340 345 5.386060 GGCCTCCAAGTAGCCTATTAAATT 58.614 41.667 0.00 0.00 43.62 1.82
342 347 5.241728 GCCTCCAAGTAGCCTATTAAATTGG 59.758 44.000 0.00 0.00 37.62 3.16
370 375 1.928868 CATTCCAAGAGGCCACCTTT 58.071 50.000 5.01 0.00 31.76 3.11
372 377 2.470057 TTCCAAGAGGCCACCTTTTT 57.530 45.000 5.01 0.00 31.76 1.94
373 378 1.995376 TCCAAGAGGCCACCTTTTTC 58.005 50.000 5.01 0.00 31.76 2.29
375 380 1.889170 CCAAGAGGCCACCTTTTTCTC 59.111 52.381 5.01 0.00 31.76 2.87
376 381 2.489802 CCAAGAGGCCACCTTTTTCTCT 60.490 50.000 5.01 0.00 36.49 3.10
377 382 2.816672 CAAGAGGCCACCTTTTTCTCTC 59.183 50.000 5.01 0.00 34.15 3.20
378 383 2.343625 AGAGGCCACCTTTTTCTCTCT 58.656 47.619 5.01 0.00 31.76 3.10
379 384 2.304470 AGAGGCCACCTTTTTCTCTCTC 59.696 50.000 5.01 0.00 31.76 3.20
386 391 5.010012 GCCACCTTTTTCTCTCTCAAATCAA 59.990 40.000 0.00 0.00 0.00 2.57
451 456 2.252714 GGAGACCAGAGTCAACCTTCT 58.747 52.381 0.00 0.00 46.15 2.85
475 494 4.022762 TCTCTCTCTCTCAAAGGAACAACG 60.023 45.833 0.00 0.00 0.00 4.10
557 576 0.107752 GAGAGCAAGCTCCCTCAAGG 60.108 60.000 17.81 0.00 43.70 3.61
587 609 1.318158 GCTTCACAAGGGAGGGCATG 61.318 60.000 0.00 0.00 0.00 4.06
629 711 0.462759 AGCCTGCCAGATTAAGCGTC 60.463 55.000 0.00 0.00 0.00 5.19
632 714 2.748605 CCTGCCAGATTAAGCGTCTAG 58.251 52.381 0.00 0.00 0.00 2.43
745 916 7.699391 GCTTAATTACCAATTTCGGGTTAAGAC 59.301 37.037 14.22 7.35 39.85 3.01
762 933 9.124807 GGGTTAAGACGAACAAAATTAATTCAG 57.875 33.333 0.10 0.00 0.00 3.02
786 957 4.510340 AGAAGTAACTAGCAACAACCAACG 59.490 41.667 0.00 0.00 0.00 4.10
813 987 6.536582 GCATCTTCATCTTGTCTTTAGCTACA 59.463 38.462 0.00 0.00 0.00 2.74
840 1029 5.755861 AGTAGAGCGGCTTAAATCAATTCTC 59.244 40.000 2.97 0.00 0.00 2.87
855 1045 0.321741 TTCTCAAATTACGGCCGGCA 60.322 50.000 31.76 16.30 0.00 5.69
905 1132 3.719173 GCTATAAGCGGAGACAGAGTT 57.281 47.619 0.00 0.00 0.00 3.01
945 1173 5.050702 GCTACTCTGTTTTCGCCTTCATATC 60.051 44.000 0.00 0.00 0.00 1.63
971 1199 6.464834 CACAAAACTGACTGAGAAAAACGTAC 59.535 38.462 0.00 0.00 0.00 3.67
991 1219 0.532573 CGTGTCTCAGGTAGCACCAT 59.467 55.000 7.86 0.00 41.95 3.55
1335 1567 3.077391 AGAATTCATTGGGGAAGTTGGGA 59.923 43.478 8.44 0.00 0.00 4.37
1992 2321 9.699410 AAATATATGGAGAGAGAGAGATAGTGG 57.301 37.037 0.00 0.00 0.00 4.00
2000 2353 3.073062 AGAGAGAGATAGTGGGAGAGAGC 59.927 52.174 0.00 0.00 0.00 4.09
2096 2458 7.754924 TGCAGCTTTCCTTAATTTTAAATCTCG 59.245 33.333 0.00 0.00 0.00 4.04
2204 4577 9.420118 TGTATATTAATCCTTTTGTTCAGCCAT 57.580 29.630 0.00 0.00 0.00 4.40
2296 4670 8.335532 TCTTGCAAACTAATTAGCATGTACTT 57.664 30.769 12.54 0.00 36.80 2.24
2307 4681 1.135199 GCATGTACTTCCTCCGTTCGA 60.135 52.381 0.00 0.00 0.00 3.71
2321 4695 4.050553 TCCGTTCGAAAATACTTGTCGTT 58.949 39.130 0.00 0.00 36.21 3.85
2399 4787 8.352201 ACACAAGAACTAAGTGTACAACGTATA 58.648 33.333 0.00 0.00 44.02 1.47
2412 4800 8.003784 GTGTACAACGTATACAAGTTTAACACC 58.996 37.037 12.72 8.07 37.40 4.16
3259 5725 9.244292 CTTGATTTCATCATATCCAGATCCATT 57.756 33.333 0.00 0.00 39.39 3.16
3302 5768 5.343715 TGGTGGGTGTTCCTAGTTTATCTA 58.656 41.667 0.00 0.00 36.20 1.98
3409 5875 4.644685 TCTCATGTCCGATCACTTGATGTA 59.355 41.667 0.00 0.00 34.37 2.29
3476 5942 3.414549 TGCGTTTTCTGGACTTTGAAC 57.585 42.857 0.00 0.00 0.00 3.18
3482 5948 3.624326 TTCTGGACTTTGAACATTGCG 57.376 42.857 0.00 0.00 0.00 4.85
3484 5950 2.548057 TCTGGACTTTGAACATTGCGAC 59.452 45.455 0.00 0.00 0.00 5.19
3678 6144 1.998315 CAATCTCAAGAGACTGGTGCG 59.002 52.381 1.20 0.00 40.75 5.34
3691 6157 3.028850 ACTGGTGCGCCTATTAGTAAGA 58.971 45.455 18.96 0.00 35.27 2.10
3692 6158 3.068307 ACTGGTGCGCCTATTAGTAAGAG 59.932 47.826 18.96 4.60 35.27 2.85
3703 6169 8.574737 CGCCTATTAGTAAGAGGTAATGTTACT 58.425 37.037 21.70 3.38 46.59 2.24
3732 6198 6.655003 CCTTGTGGAATTTCTAAGCTACAAGA 59.345 38.462 16.47 5.06 43.76 3.02
3822 6288 3.055530 CAGCAGAGTCTGAAGGTATTGGT 60.056 47.826 24.55 0.00 36.19 3.67
3823 6289 3.584848 AGCAGAGTCTGAAGGTATTGGTT 59.415 43.478 24.55 0.00 32.44 3.67
3941 6425 4.249661 CCTTCTCTCTCTAACTGTTTGGC 58.750 47.826 0.00 0.00 0.00 4.52
3946 6430 3.327757 TCTCTCTAACTGTTTGGCATGGT 59.672 43.478 0.00 0.00 0.00 3.55
4062 6546 0.474660 AGCTCCCTTGTCAACCTCCT 60.475 55.000 0.00 0.00 0.00 3.69
4066 6550 0.036875 CCCTTGTCAACCTCCTGGAC 59.963 60.000 0.00 0.00 37.04 4.02
4067 6551 0.764890 CCTTGTCAACCTCCTGGACA 59.235 55.000 0.00 0.00 39.60 4.02
4076 6560 0.105039 CCTCCTGGACATACGCCTTC 59.895 60.000 0.00 0.00 34.57 3.46
4083 6567 1.065551 GGACATACGCCTTCAATTGGC 59.934 52.381 5.42 0.00 46.42 4.52
4099 6583 1.743252 GGCGGGAGTTGAGCAGAAG 60.743 63.158 0.00 0.00 0.00 2.85
4168 6652 6.125029 TCTGAGAATTGATGGAAGGGAAATC 58.875 40.000 0.00 0.00 0.00 2.17
4222 6706 1.279271 ACAAGGGTCATAGTCTGTGGC 59.721 52.381 0.00 0.00 0.00 5.01
4400 6899 9.844257 ATTTTGATCTCGGAATAGAAAATCTCT 57.156 29.630 0.00 0.00 38.28 3.10
4408 6907 5.686124 CGGAATAGAAAATCTCTCCAGCCTT 60.686 44.000 8.38 0.00 35.41 4.35
4426 6925 7.615365 TCCAGCCTTGTTAAAATCAGATGTTAT 59.385 33.333 0.00 0.00 0.00 1.89
4435 6934 8.576442 GTTAAAATCAGATGTTATGTATGGGGG 58.424 37.037 0.00 0.00 0.00 5.40
4443 6942 0.837260 TATGTATGGGGGTACGGGGC 60.837 60.000 0.00 0.00 0.00 5.80
4587 7132 3.519107 TCTCCCATGAAAGAGCATGTACA 59.481 43.478 0.00 0.00 43.16 2.90
4615 7415 7.716799 ATCCACAAGATCTATGTATCTCTCC 57.283 40.000 0.00 0.00 35.10 3.71
4616 7416 6.857848 TCCACAAGATCTATGTATCTCTCCT 58.142 40.000 0.00 0.00 35.10 3.69
4655 7471 9.107367 GATATTTTGTCTGTCTTTTTCAGTTCG 57.893 33.333 0.00 0.00 34.86 3.95
4665 7481 4.647399 TCTTTTTCAGTTCGGGGAACAATT 59.353 37.500 10.74 0.00 44.11 2.32
4765 7590 3.009115 TGCCTCCCTGCTGGTACC 61.009 66.667 4.43 4.43 34.77 3.34
4769 7594 0.325296 CCTCCCTGCTGGTACCTACA 60.325 60.000 14.36 10.21 34.77 2.74
4784 7609 7.642186 TGGTACCTACATAGTCAAACCTAGTA 58.358 38.462 14.36 0.00 0.00 1.82
4785 7610 8.115384 TGGTACCTACATAGTCAAACCTAGTAA 58.885 37.037 14.36 0.00 0.00 2.24
4843 7683 3.230134 CATCCCTAGCTAGAGAACTGCT 58.770 50.000 22.70 0.00 40.43 4.24
5257 8402 2.951726 TCAGAGCTTCACGTTCAGATG 58.048 47.619 0.00 0.00 0.00 2.90
5297 8442 5.485662 AGTTGCAACTAAAGTGTCTTCAC 57.514 39.130 30.25 0.00 40.00 3.18
5336 8481 2.356069 GAGAAAAAGGCAGAATAGGCGG 59.644 50.000 0.00 0.00 39.37 6.13
5343 8488 0.753262 GCAGAATAGGCGGAGGAGAA 59.247 55.000 0.00 0.00 0.00 2.87
5344 8489 1.139058 GCAGAATAGGCGGAGGAGAAA 59.861 52.381 0.00 0.00 0.00 2.52
5351 8496 4.814294 CGGAGGAGAAACGGCGGG 62.814 72.222 13.24 0.00 0.00 6.13
5359 8504 1.004679 GAAACGGCGGGAACAGGTA 60.005 57.895 13.24 0.00 0.00 3.08
5373 8518 2.803956 ACAGGTAGTGACGATCCAGAA 58.196 47.619 0.00 0.00 0.00 3.02
5379 8524 1.276421 AGTGACGATCCAGAACAAGGG 59.724 52.381 0.00 0.00 0.00 3.95
5433 8578 2.978978 TGATCAGGTCCAGACTCCAAAA 59.021 45.455 0.00 0.00 0.00 2.44
5533 8750 3.501062 CGATCCTGCATGCATTTACATCT 59.499 43.478 22.97 0.06 0.00 2.90
5534 8751 4.612939 CGATCCTGCATGCATTTACATCTG 60.613 45.833 22.97 5.79 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.416284 GTATTTAATACTCCCTCCATTCCAAAA 57.584 33.333 7.77 0.00 33.00 2.44
6 7 8.002459 GGTATTTAATACTCCCTCCATTCCAAA 58.998 37.037 13.86 0.00 36.04 3.28
7 8 7.352522 AGGTATTTAATACTCCCTCCATTCCAA 59.647 37.037 13.86 0.00 36.04 3.53
8 9 6.855061 AGGTATTTAATACTCCCTCCATTCCA 59.145 38.462 13.86 0.00 36.04 3.53
9 10 7.331089 AGGTATTTAATACTCCCTCCATTCC 57.669 40.000 13.86 0.00 36.04 3.01
10 11 9.945904 CTAAGGTATTTAATACTCCCTCCATTC 57.054 37.037 13.86 0.00 36.04 2.67
11 12 8.383947 GCTAAGGTATTTAATACTCCCTCCATT 58.616 37.037 13.86 0.00 36.04 3.16
12 13 7.516209 TGCTAAGGTATTTAATACTCCCTCCAT 59.484 37.037 13.86 0.00 36.04 3.41
13 14 6.847567 TGCTAAGGTATTTAATACTCCCTCCA 59.152 38.462 13.86 3.84 36.04 3.86
14 15 7.312415 TGCTAAGGTATTTAATACTCCCTCC 57.688 40.000 13.86 0.00 36.04 4.30
15 16 8.430431 ACTTGCTAAGGTATTTAATACTCCCTC 58.570 37.037 13.86 0.00 36.04 4.30
16 17 8.333226 ACTTGCTAAGGTATTTAATACTCCCT 57.667 34.615 13.86 1.56 36.04 4.20
17 18 8.208903 TGACTTGCTAAGGTATTTAATACTCCC 58.791 37.037 13.86 0.00 36.04 4.30
18 19 9.609346 TTGACTTGCTAAGGTATTTAATACTCC 57.391 33.333 13.86 0.00 36.04 3.85
23 24 9.384764 GAGAGTTGACTTGCTAAGGTATTTAAT 57.615 33.333 0.00 0.00 0.00 1.40
24 25 7.822822 GGAGAGTTGACTTGCTAAGGTATTTAA 59.177 37.037 0.00 0.00 0.00 1.52
25 26 7.038587 TGGAGAGTTGACTTGCTAAGGTATTTA 60.039 37.037 0.00 0.00 0.00 1.40
26 27 6.174049 GGAGAGTTGACTTGCTAAGGTATTT 58.826 40.000 0.00 0.00 0.00 1.40
27 28 5.248477 TGGAGAGTTGACTTGCTAAGGTATT 59.752 40.000 0.00 0.00 0.00 1.89
28 29 4.777896 TGGAGAGTTGACTTGCTAAGGTAT 59.222 41.667 0.00 0.00 0.00 2.73
29 30 4.157246 TGGAGAGTTGACTTGCTAAGGTA 58.843 43.478 0.00 0.00 0.00 3.08
30 31 2.972713 TGGAGAGTTGACTTGCTAAGGT 59.027 45.455 0.00 0.00 0.00 3.50
31 32 3.685139 TGGAGAGTTGACTTGCTAAGG 57.315 47.619 0.00 0.00 0.00 2.69
32 33 4.142730 GCATTGGAGAGTTGACTTGCTAAG 60.143 45.833 0.00 0.00 0.00 2.18
33 34 3.753272 GCATTGGAGAGTTGACTTGCTAA 59.247 43.478 0.00 0.00 0.00 3.09
34 35 3.244526 TGCATTGGAGAGTTGACTTGCTA 60.245 43.478 5.24 0.00 0.00 3.49
35 36 2.157738 GCATTGGAGAGTTGACTTGCT 58.842 47.619 0.00 0.00 0.00 3.91
36 37 1.881973 TGCATTGGAGAGTTGACTTGC 59.118 47.619 0.00 0.00 0.00 4.01
37 38 5.413833 ACTTATGCATTGGAGAGTTGACTTG 59.586 40.000 3.54 0.00 0.00 3.16
38 39 5.413833 CACTTATGCATTGGAGAGTTGACTT 59.586 40.000 3.54 0.00 0.00 3.01
39 40 4.940046 CACTTATGCATTGGAGAGTTGACT 59.060 41.667 3.54 0.00 0.00 3.41
40 41 5.227238 CACTTATGCATTGGAGAGTTGAC 57.773 43.478 3.54 0.00 0.00 3.18
57 58 9.887406 GCTTAGTAACAACAAATTAAGCACTTA 57.113 29.630 8.65 0.00 41.41 2.24
58 59 8.410141 TGCTTAGTAACAACAAATTAAGCACTT 58.590 29.630 11.42 0.00 44.51 3.16
59 60 7.936584 TGCTTAGTAACAACAAATTAAGCACT 58.063 30.769 11.42 0.00 44.51 4.40
61 62 7.708051 TGTGCTTAGTAACAACAAATTAAGCA 58.292 30.769 11.42 11.42 46.11 3.91
62 63 8.742554 ATGTGCTTAGTAACAACAAATTAAGC 57.257 30.769 7.01 7.01 41.87 3.09
102 103 8.739039 CCAATCCATGAAAGACATTAAGTGTTA 58.261 33.333 0.00 0.00 42.36 2.41
103 104 7.233348 ACCAATCCATGAAAGACATTAAGTGTT 59.767 33.333 0.00 0.00 42.36 3.32
104 105 6.721208 ACCAATCCATGAAAGACATTAAGTGT 59.279 34.615 0.00 0.00 45.83 3.55
105 106 7.094248 TGACCAATCCATGAAAGACATTAAGTG 60.094 37.037 0.00 0.00 37.07 3.16
106 107 6.947733 TGACCAATCCATGAAAGACATTAAGT 59.052 34.615 0.00 0.00 37.07 2.24
107 108 7.395190 TGACCAATCCATGAAAGACATTAAG 57.605 36.000 0.00 0.00 37.07 1.85
108 109 7.773489 TTGACCAATCCATGAAAGACATTAA 57.227 32.000 0.00 0.00 37.07 1.40
109 110 7.773489 TTTGACCAATCCATGAAAGACATTA 57.227 32.000 0.00 0.00 37.07 1.90
110 111 6.669125 TTTGACCAATCCATGAAAGACATT 57.331 33.333 0.00 0.00 37.07 2.71
111 112 6.862469 ATTTGACCAATCCATGAAAGACAT 57.138 33.333 0.00 0.00 40.17 3.06
112 113 6.041865 ACAATTTGACCAATCCATGAAAGACA 59.958 34.615 2.79 0.00 0.00 3.41
113 114 6.458210 ACAATTTGACCAATCCATGAAAGAC 58.542 36.000 2.79 0.00 0.00 3.01
114 115 6.669125 ACAATTTGACCAATCCATGAAAGA 57.331 33.333 2.79 0.00 0.00 2.52
115 116 7.441760 TGAAACAATTTGACCAATCCATGAAAG 59.558 33.333 2.79 0.00 0.00 2.62
116 117 7.278135 TGAAACAATTTGACCAATCCATGAAA 58.722 30.769 2.79 0.00 0.00 2.69
117 118 6.824553 TGAAACAATTTGACCAATCCATGAA 58.175 32.000 2.79 0.00 0.00 2.57
118 119 6.416631 TGAAACAATTTGACCAATCCATGA 57.583 33.333 2.79 0.00 0.00 3.07
119 120 7.675962 AATGAAACAATTTGACCAATCCATG 57.324 32.000 2.79 0.00 0.00 3.66
120 121 9.790344 TTAAATGAAACAATTTGACCAATCCAT 57.210 25.926 2.79 0.00 32.16 3.41
121 122 9.270640 CTTAAATGAAACAATTTGACCAATCCA 57.729 29.630 2.79 0.00 32.16 3.41
122 123 9.271828 ACTTAAATGAAACAATTTGACCAATCC 57.728 29.630 2.79 0.00 32.16 3.01
124 125 9.054922 CCACTTAAATGAAACAATTTGACCAAT 57.945 29.630 2.79 0.00 32.16 3.16
125 126 8.043710 ACCACTTAAATGAAACAATTTGACCAA 58.956 29.630 2.79 0.00 32.16 3.67
126 127 7.560368 ACCACTTAAATGAAACAATTTGACCA 58.440 30.769 2.79 0.00 32.16 4.02
127 128 8.432110 AACCACTTAAATGAAACAATTTGACC 57.568 30.769 2.79 0.00 32.16 4.02
128 129 9.701355 CAAACCACTTAAATGAAACAATTTGAC 57.299 29.630 2.79 0.00 32.16 3.18
129 130 8.394121 GCAAACCACTTAAATGAAACAATTTGA 58.606 29.630 2.79 0.00 32.16 2.69
130 131 8.397148 AGCAAACCACTTAAATGAAACAATTTG 58.603 29.630 0.00 0.00 32.16 2.32
131 132 8.504812 AGCAAACCACTTAAATGAAACAATTT 57.495 26.923 0.00 0.00 34.24 1.82
132 133 8.504812 AAGCAAACCACTTAAATGAAACAATT 57.495 26.923 0.00 0.00 0.00 2.32
133 134 9.260002 CTAAGCAAACCACTTAAATGAAACAAT 57.740 29.630 0.00 0.00 0.00 2.71
134 135 7.708752 CCTAAGCAAACCACTTAAATGAAACAA 59.291 33.333 0.00 0.00 0.00 2.83
135 136 7.147811 ACCTAAGCAAACCACTTAAATGAAACA 60.148 33.333 0.00 0.00 0.00 2.83
136 137 7.207383 ACCTAAGCAAACCACTTAAATGAAAC 58.793 34.615 0.00 0.00 0.00 2.78
137 138 7.354751 ACCTAAGCAAACCACTTAAATGAAA 57.645 32.000 0.00 0.00 0.00 2.69
138 139 6.969993 ACCTAAGCAAACCACTTAAATGAA 57.030 33.333 0.00 0.00 0.00 2.57
139 140 6.775629 AGAACCTAAGCAAACCACTTAAATGA 59.224 34.615 0.00 0.00 0.00 2.57
140 141 6.981722 AGAACCTAAGCAAACCACTTAAATG 58.018 36.000 0.00 0.00 0.00 2.32
141 142 6.072673 CGAGAACCTAAGCAAACCACTTAAAT 60.073 38.462 0.00 0.00 0.00 1.40
142 143 5.237779 CGAGAACCTAAGCAAACCACTTAAA 59.762 40.000 0.00 0.00 0.00 1.52
143 144 4.753107 CGAGAACCTAAGCAAACCACTTAA 59.247 41.667 0.00 0.00 0.00 1.85
144 145 4.312443 CGAGAACCTAAGCAAACCACTTA 58.688 43.478 0.00 0.00 0.00 2.24
145 146 3.139077 CGAGAACCTAAGCAAACCACTT 58.861 45.455 0.00 0.00 0.00 3.16
146 147 2.767505 CGAGAACCTAAGCAAACCACT 58.232 47.619 0.00 0.00 0.00 4.00
147 148 1.197036 GCGAGAACCTAAGCAAACCAC 59.803 52.381 0.00 0.00 0.00 4.16
148 149 1.519408 GCGAGAACCTAAGCAAACCA 58.481 50.000 0.00 0.00 0.00 3.67
149 150 0.442699 CGCGAGAACCTAAGCAAACC 59.557 55.000 0.00 0.00 0.00 3.27
150 151 0.179222 GCGCGAGAACCTAAGCAAAC 60.179 55.000 12.10 0.00 0.00 2.93
151 152 0.320421 AGCGCGAGAACCTAAGCAAA 60.320 50.000 12.10 0.00 0.00 3.68
152 153 0.320421 AAGCGCGAGAACCTAAGCAA 60.320 50.000 12.10 0.00 0.00 3.91
153 154 1.014044 CAAGCGCGAGAACCTAAGCA 61.014 55.000 12.10 0.00 0.00 3.91
154 155 1.696832 CCAAGCGCGAGAACCTAAGC 61.697 60.000 12.10 0.00 0.00 3.09
155 156 1.696832 GCCAAGCGCGAGAACCTAAG 61.697 60.000 12.10 0.00 0.00 2.18
156 157 1.740296 GCCAAGCGCGAGAACCTAA 60.740 57.895 12.10 0.00 0.00 2.69
157 158 2.125673 GCCAAGCGCGAGAACCTA 60.126 61.111 12.10 0.00 0.00 3.08
158 159 3.612247 ATGCCAAGCGCGAGAACCT 62.612 57.895 12.10 0.00 42.08 3.50
159 160 2.690778 AATGCCAAGCGCGAGAACC 61.691 57.895 12.10 0.00 42.08 3.62
160 161 1.512734 CAATGCCAAGCGCGAGAAC 60.513 57.895 12.10 0.00 42.08 3.01
161 162 1.026182 ATCAATGCCAAGCGCGAGAA 61.026 50.000 12.10 0.00 42.08 2.87
162 163 1.026182 AATCAATGCCAAGCGCGAGA 61.026 50.000 12.10 0.00 42.08 4.04
163 164 0.590732 GAATCAATGCCAAGCGCGAG 60.591 55.000 12.10 0.00 42.08 5.03
164 165 1.026182 AGAATCAATGCCAAGCGCGA 61.026 50.000 12.10 0.00 42.08 5.87
165 166 0.179156 AAGAATCAATGCCAAGCGCG 60.179 50.000 0.00 0.00 42.08 6.86
166 167 1.135315 TGAAGAATCAATGCCAAGCGC 60.135 47.619 0.00 0.00 32.68 5.92
167 168 2.925578 TGAAGAATCAATGCCAAGCG 57.074 45.000 0.00 0.00 30.99 4.68
168 169 5.298777 ACTCTATGAAGAATCAATGCCAAGC 59.701 40.000 0.00 0.00 39.49 4.01
169 170 6.541278 TGACTCTATGAAGAATCAATGCCAAG 59.459 38.462 0.00 0.00 35.15 3.61
170 171 6.417258 TGACTCTATGAAGAATCAATGCCAA 58.583 36.000 0.00 0.00 35.15 4.52
171 172 5.993055 TGACTCTATGAAGAATCAATGCCA 58.007 37.500 0.00 0.00 35.15 4.92
172 173 6.709397 TGATGACTCTATGAAGAATCAATGCC 59.291 38.462 0.00 0.00 41.04 4.40
173 174 7.725818 TGATGACTCTATGAAGAATCAATGC 57.274 36.000 0.00 0.00 41.04 3.56
175 176 9.902684 ACTTTGATGACTCTATGAAGAATCAAT 57.097 29.630 0.00 0.00 41.04 2.57
176 177 9.159364 CACTTTGATGACTCTATGAAGAATCAA 57.841 33.333 0.00 0.00 41.04 2.57
177 178 7.279536 GCACTTTGATGACTCTATGAAGAATCA 59.720 37.037 0.00 0.00 41.85 2.57
178 179 7.495279 AGCACTTTGATGACTCTATGAAGAATC 59.505 37.037 0.00 0.00 0.00 2.52
179 180 7.337167 AGCACTTTGATGACTCTATGAAGAAT 58.663 34.615 0.00 0.00 0.00 2.40
180 181 6.705302 AGCACTTTGATGACTCTATGAAGAA 58.295 36.000 0.00 0.00 0.00 2.52
181 182 6.154192 AGAGCACTTTGATGACTCTATGAAGA 59.846 38.462 0.00 0.00 33.86 2.87
182 183 6.339730 AGAGCACTTTGATGACTCTATGAAG 58.660 40.000 0.00 0.00 33.86 3.02
183 184 6.154192 AGAGAGCACTTTGATGACTCTATGAA 59.846 38.462 0.00 0.00 34.97 2.57
184 185 5.655974 AGAGAGCACTTTGATGACTCTATGA 59.344 40.000 0.00 0.00 34.97 2.15
185 186 5.904941 AGAGAGCACTTTGATGACTCTATG 58.095 41.667 0.00 0.00 34.97 2.23
186 187 5.068987 GGAGAGAGCACTTTGATGACTCTAT 59.931 44.000 0.00 0.00 36.07 1.98
187 188 4.400884 GGAGAGAGCACTTTGATGACTCTA 59.599 45.833 0.00 0.00 36.07 2.43
188 189 3.195396 GGAGAGAGCACTTTGATGACTCT 59.805 47.826 0.00 0.00 37.49 3.24
189 190 3.520569 GGAGAGAGCACTTTGATGACTC 58.479 50.000 0.00 0.00 0.00 3.36
190 191 2.235898 GGGAGAGAGCACTTTGATGACT 59.764 50.000 0.00 0.00 0.00 3.41
191 192 2.626840 GGGAGAGAGCACTTTGATGAC 58.373 52.381 0.00 0.00 0.00 3.06
192 193 1.556911 GGGGAGAGAGCACTTTGATGA 59.443 52.381 0.00 0.00 0.00 2.92
193 194 1.558756 AGGGGAGAGAGCACTTTGATG 59.441 52.381 0.00 0.00 0.00 3.07
194 195 1.963985 AGGGGAGAGAGCACTTTGAT 58.036 50.000 0.00 0.00 0.00 2.57
195 196 2.623418 TAGGGGAGAGAGCACTTTGA 57.377 50.000 0.00 0.00 0.00 2.69
196 197 3.922171 AATAGGGGAGAGAGCACTTTG 57.078 47.619 0.00 0.00 0.00 2.77
197 198 6.388619 TTTAAATAGGGGAGAGAGCACTTT 57.611 37.500 0.00 0.00 0.00 2.66
198 199 6.582929 ATTTAAATAGGGGAGAGAGCACTT 57.417 37.500 0.00 0.00 0.00 3.16
199 200 7.691993 TTATTTAAATAGGGGAGAGAGCACT 57.308 36.000 7.91 0.00 0.00 4.40
200 201 7.939588 ACATTATTTAAATAGGGGAGAGAGCAC 59.060 37.037 7.91 0.00 0.00 4.40
201 202 8.045720 ACATTATTTAAATAGGGGAGAGAGCA 57.954 34.615 7.91 0.00 0.00 4.26
202 203 9.438228 GTACATTATTTAAATAGGGGAGAGAGC 57.562 37.037 7.91 0.00 0.00 4.09
203 204 9.945904 GGTACATTATTTAAATAGGGGAGAGAG 57.054 37.037 7.91 0.00 0.00 3.20
204 205 9.455144 TGGTACATTATTTAAATAGGGGAGAGA 57.545 33.333 7.91 0.00 0.00 3.10
232 233 9.793252 AGCATGTCATATAAACAGAAAAATGAC 57.207 29.630 6.36 6.36 42.14 3.06
236 237 9.787532 GCTAAGCATGTCATATAAACAGAAAAA 57.212 29.630 0.00 0.00 0.00 1.94
237 238 8.955388 TGCTAAGCATGTCATATAAACAGAAAA 58.045 29.630 0.00 0.00 31.71 2.29
238 239 8.504812 TGCTAAGCATGTCATATAAACAGAAA 57.495 30.769 0.00 0.00 31.71 2.52
255 256 3.947196 CCACCATAAACAGATGCTAAGCA 59.053 43.478 0.00 0.00 44.86 3.91
256 257 4.199310 TCCACCATAAACAGATGCTAAGC 58.801 43.478 0.00 0.00 0.00 3.09
257 258 4.274459 GCTCCACCATAAACAGATGCTAAG 59.726 45.833 0.00 0.00 0.00 2.18
258 259 4.199310 GCTCCACCATAAACAGATGCTAA 58.801 43.478 0.00 0.00 0.00 3.09
259 260 3.199727 TGCTCCACCATAAACAGATGCTA 59.800 43.478 0.00 0.00 0.00 3.49
260 261 2.025981 TGCTCCACCATAAACAGATGCT 60.026 45.455 0.00 0.00 0.00 3.79
261 262 2.098117 GTGCTCCACCATAAACAGATGC 59.902 50.000 0.00 0.00 0.00 3.91
262 263 3.376234 CAGTGCTCCACCATAAACAGATG 59.624 47.826 0.00 0.00 34.49 2.90
263 264 3.264193 TCAGTGCTCCACCATAAACAGAT 59.736 43.478 0.00 0.00 34.49 2.90
264 265 2.637382 TCAGTGCTCCACCATAAACAGA 59.363 45.455 0.00 0.00 34.49 3.41
265 266 3.005554 CTCAGTGCTCCACCATAAACAG 58.994 50.000 0.00 0.00 34.49 3.16
266 267 2.637382 TCTCAGTGCTCCACCATAAACA 59.363 45.455 0.00 0.00 34.49 2.83
267 268 3.334583 TCTCAGTGCTCCACCATAAAC 57.665 47.619 0.00 0.00 34.49 2.01
268 269 4.365514 TTTCTCAGTGCTCCACCATAAA 57.634 40.909 0.00 0.00 34.49 1.40
269 270 4.326826 CTTTTCTCAGTGCTCCACCATAA 58.673 43.478 0.00 0.00 34.49 1.90
270 271 3.869912 GCTTTTCTCAGTGCTCCACCATA 60.870 47.826 0.00 0.00 34.49 2.74
271 272 2.787994 CTTTTCTCAGTGCTCCACCAT 58.212 47.619 0.00 0.00 34.49 3.55
272 273 1.815408 GCTTTTCTCAGTGCTCCACCA 60.815 52.381 0.00 0.00 34.49 4.17
273 274 0.877743 GCTTTTCTCAGTGCTCCACC 59.122 55.000 0.00 0.00 34.49 4.61
274 275 0.877743 GGCTTTTCTCAGTGCTCCAC 59.122 55.000 0.00 0.00 34.10 4.02
275 276 0.767375 AGGCTTTTCTCAGTGCTCCA 59.233 50.000 0.00 0.00 0.00 3.86
276 277 2.027653 AGTAGGCTTTTCTCAGTGCTCC 60.028 50.000 0.00 0.00 0.00 4.70
277 278 3.326836 AGTAGGCTTTTCTCAGTGCTC 57.673 47.619 0.00 0.00 0.00 4.26
278 279 3.578716 TGTAGTAGGCTTTTCTCAGTGCT 59.421 43.478 0.00 0.00 0.00 4.40
279 280 3.926616 TGTAGTAGGCTTTTCTCAGTGC 58.073 45.455 0.00 0.00 0.00 4.40
280 281 4.926238 CACTGTAGTAGGCTTTTCTCAGTG 59.074 45.833 17.67 17.67 42.96 3.66
281 282 4.589374 ACACTGTAGTAGGCTTTTCTCAGT 59.411 41.667 0.00 0.00 35.69 3.41
282 283 5.140747 ACACTGTAGTAGGCTTTTCTCAG 57.859 43.478 0.00 0.00 0.00 3.35
283 284 5.546621 AACACTGTAGTAGGCTTTTCTCA 57.453 39.130 0.00 0.00 0.00 3.27
284 285 7.817962 TGAATAACACTGTAGTAGGCTTTTCTC 59.182 37.037 0.00 0.00 0.00 2.87
285 286 7.676947 TGAATAACACTGTAGTAGGCTTTTCT 58.323 34.615 0.00 0.00 0.00 2.52
286 287 7.900782 TGAATAACACTGTAGTAGGCTTTTC 57.099 36.000 0.00 0.00 0.00 2.29
287 288 8.863872 ATTGAATAACACTGTAGTAGGCTTTT 57.136 30.769 0.00 0.00 0.00 2.27
288 289 8.863872 AATTGAATAACACTGTAGTAGGCTTT 57.136 30.769 0.00 0.00 0.00 3.51
338 343 1.868713 TGGAATGCATCTTGGCCAAT 58.131 45.000 20.85 1.11 0.00 3.16
340 345 1.187974 CTTGGAATGCATCTTGGCCA 58.812 50.000 0.00 0.00 0.00 5.36
342 347 1.407979 CCTCTTGGAATGCATCTTGGC 59.592 52.381 0.00 0.00 34.57 4.52
344 349 1.407979 GGCCTCTTGGAATGCATCTTG 59.592 52.381 0.00 0.00 34.57 3.02
397 402 3.374367 CGTCGTCTGTCTCTTGGAAGATA 59.626 47.826 0.00 0.00 33.93 1.98
403 408 1.444553 GGCGTCGTCTGTCTCTTGG 60.445 63.158 0.00 0.00 0.00 3.61
451 456 5.508153 CGTTGTTCCTTTGAGAGAGAGAGAA 60.508 44.000 0.00 0.00 0.00 2.87
551 570 0.534412 AGCTGGATGACGACCTTGAG 59.466 55.000 0.00 0.00 0.00 3.02
557 576 1.728971 CTTGTGAAGCTGGATGACGAC 59.271 52.381 0.00 0.00 0.00 4.34
661 743 3.096092 AGCTCTCTTCATCCGAGAAAGT 58.904 45.455 0.00 0.00 37.10 2.66
663 745 3.259374 ACAAGCTCTCTTCATCCGAGAAA 59.741 43.478 0.00 0.00 37.10 2.52
762 933 5.333111 CGTTGGTTGTTGCTAGTTACTTCTC 60.333 44.000 0.00 0.00 0.00 2.87
764 935 4.508861 TCGTTGGTTGTTGCTAGTTACTTC 59.491 41.667 0.00 0.00 0.00 3.01
786 957 5.816777 AGCTAAAGACAAGATGAAGATGCTC 59.183 40.000 0.00 0.00 0.00 4.26
813 987 4.202245 TGATTTAAGCCGCTCTACTTGT 57.798 40.909 0.00 0.00 0.00 3.16
840 1029 0.172352 ACATTGCCGGCCGTAATTTG 59.828 50.000 26.77 16.52 0.00 2.32
905 1132 5.534278 CAGAGTAGCTAGACTGAATGATGGA 59.466 44.000 17.23 0.00 32.90 3.41
945 1173 4.793216 CGTTTTTCTCAGTCAGTTTTGTGG 59.207 41.667 0.00 0.00 0.00 4.17
971 1199 1.215647 GGTGCTACCTGAGACACGG 59.784 63.158 0.00 0.00 34.73 4.94
991 1219 2.676121 CGCCTCCATGGTTGCCAA 60.676 61.111 12.58 0.00 36.95 4.52
1335 1567 2.755929 GCGACGAGCCTTCATCTTT 58.244 52.632 0.00 0.00 40.81 2.52
1392 1624 0.324738 TCCTCTCAGCCACCTCGATT 60.325 55.000 0.00 0.00 0.00 3.34
1729 1982 4.437682 AATCTTTCCCACTGACTTCACA 57.562 40.909 0.00 0.00 0.00 3.58
1857 2111 9.308000 AGAACCACATGGAACTTCATTAATTTA 57.692 29.630 4.53 0.00 38.94 1.40
1987 2316 0.106819 GGGTACGCTCTCTCCCACTA 60.107 60.000 2.05 0.00 39.68 2.74
1990 2319 2.439701 CGGGTACGCTCTCTCCCA 60.440 66.667 8.43 0.00 39.87 4.37
1992 2321 0.100861 CTTTCGGGTACGCTCTCTCC 59.899 60.000 8.43 0.00 40.69 3.71
2000 2353 7.255569 TCATAAGATATATGCTTTCGGGTACG 58.744 38.462 0.00 0.00 42.74 3.67
2072 2434 7.702348 CCCGAGATTTAAAATTAAGGAAAGCTG 59.298 37.037 0.00 0.00 28.28 4.24
2096 2458 2.127708 AGGTGTGGATCTAACCATCCC 58.872 52.381 12.51 0.00 41.78 3.85
2186 4559 3.782992 AGGATGGCTGAACAAAAGGATT 58.217 40.909 0.00 0.00 0.00 3.01
2204 4577 8.047310 GTCATTACCATAGAAAAGAGGAAAGGA 58.953 37.037 0.00 0.00 0.00 3.36
2296 4670 4.240096 GACAAGTATTTTCGAACGGAGGA 58.760 43.478 0.00 0.00 0.00 3.71
2307 4681 9.292846 GTTTTCCTAAACAACGACAAGTATTTT 57.707 29.630 0.00 0.00 42.56 1.82
2321 4695 4.263435 ACTTGTCGTGGTTTTCCTAAACA 58.737 39.130 0.00 0.00 44.37 2.83
2399 4787 2.612212 CTGACGCAGGTGTTAAACTTGT 59.388 45.455 0.00 0.00 38.14 3.16
2412 4800 1.728971 CCTGTAAGAAAGCTGACGCAG 59.271 52.381 0.00 2.92 35.04 5.18
3259 5725 7.093992 CCACCAAAGTAACAAAGTTTTCTTCA 58.906 34.615 0.00 0.00 39.48 3.02
3302 5768 3.181491 CGAACTTTGTTGTGTGTCCCAAT 60.181 43.478 0.00 0.00 0.00 3.16
3409 5875 6.053632 GGAATTTTCACAGATTCCCCAAAT 57.946 37.500 4.19 0.00 43.51 2.32
3476 5942 1.197721 GTTCTCCAGTTGGTCGCAATG 59.802 52.381 0.00 0.00 36.34 2.82
3678 6144 9.911138 GAGTAACATTACCTCTTACTAATAGGC 57.089 37.037 1.00 0.00 32.10 3.93
3691 6157 5.546499 TCCACAAGGAAGAGTAACATTACCT 59.454 40.000 0.00 0.00 42.23 3.08
3692 6158 5.801380 TCCACAAGGAAGAGTAACATTACC 58.199 41.667 0.00 0.00 42.23 2.85
3721 6187 7.450074 TCAATTTCTCCAGTTCTTGTAGCTTA 58.550 34.615 0.00 0.00 0.00 3.09
3727 6193 3.823304 GCCTCAATTTCTCCAGTTCTTGT 59.177 43.478 0.00 0.00 0.00 3.16
3732 6198 3.823304 GACAAGCCTCAATTTCTCCAGTT 59.177 43.478 0.00 0.00 0.00 3.16
3845 6329 1.089920 GCATTCACTCGGTCAGCATT 58.910 50.000 0.00 0.00 0.00 3.56
3846 6330 0.251354 AGCATTCACTCGGTCAGCAT 59.749 50.000 0.00 0.00 0.00 3.79
3941 6425 4.599041 TCCCTTACAAATTCAGGACCATG 58.401 43.478 0.00 0.00 0.00 3.66
3946 6430 5.843019 AAGACTCCCTTACAAATTCAGGA 57.157 39.130 0.00 0.00 32.24 3.86
4062 6546 2.364632 CCAATTGAAGGCGTATGTCCA 58.635 47.619 7.12 0.00 0.00 4.02
4076 6560 1.243342 TGCTCAACTCCCGCCAATTG 61.243 55.000 0.00 0.00 0.00 2.32
4083 6567 0.539051 ATCCTTCTGCTCAACTCCCG 59.461 55.000 0.00 0.00 0.00 5.14
4085 6569 3.949132 AGAAATCCTTCTGCTCAACTCC 58.051 45.455 0.00 0.00 40.54 3.85
4099 6583 6.455690 AACCCTCCAAGGATATAGAAATCC 57.544 41.667 0.00 0.00 45.06 3.01
4120 6604 2.221055 CAGACAACGCAGAACAGGTAAC 59.779 50.000 0.00 0.00 0.00 2.50
4168 6652 7.011857 GGCTCTTCTGTTAATGAGGTATTTCTG 59.988 40.741 0.00 0.00 0.00 3.02
4331 6815 2.722629 CAGTTTCTGCTGCGTGAAATTG 59.277 45.455 19.85 19.85 35.02 2.32
4400 6899 5.324409 ACATCTGATTTTAACAAGGCTGGA 58.676 37.500 0.00 0.00 0.00 3.86
4408 6907 9.130661 CCCCATACATAACATCTGATTTTAACA 57.869 33.333 0.81 0.00 0.00 2.41
4426 6925 2.769195 GCCCCGTACCCCCATACA 60.769 66.667 0.00 0.00 0.00 2.29
4435 6934 2.338984 CTGCTATCGGCCCCGTAC 59.661 66.667 6.61 0.00 40.92 3.67
4443 6942 1.284657 CTCAACTGTGCTGCTATCGG 58.715 55.000 0.00 0.00 0.00 4.18
4455 6954 1.177256 AGCCTTTGCAGCCTCAACTG 61.177 55.000 0.00 0.00 41.13 3.16
4615 7415 8.074370 CAGACAAAATATCATGTGAGGCAATAG 58.926 37.037 0.00 0.00 0.00 1.73
4616 7416 7.557358 ACAGACAAAATATCATGTGAGGCAATA 59.443 33.333 0.00 0.00 0.00 1.90
4806 7631 3.144506 GGGATGCTGTGAGTATGAATGG 58.855 50.000 0.00 0.00 0.00 3.16
4811 7651 2.632028 AGCTAGGGATGCTGTGAGTATG 59.368 50.000 0.00 0.00 39.56 2.39
4843 7683 4.096681 TCTCTATCTGAAGGGTGCAGAAA 58.903 43.478 0.00 0.00 44.71 2.52
5178 8320 2.743938 GTTCAGAGCTTCACGTCAAGA 58.256 47.619 2.28 0.00 0.00 3.02
5257 8402 4.378874 GCAACTAAAGTGTCCAGATTCAGC 60.379 45.833 0.00 0.00 0.00 4.26
5295 8440 2.945008 TCAAGTTTCTCCTGCAGTTGTG 59.055 45.455 13.81 0.00 0.00 3.33
5297 8442 3.470709 TCTCAAGTTTCTCCTGCAGTTG 58.529 45.455 13.81 8.72 0.00 3.16
5336 8481 1.740664 GTTCCCGCCGTTTCTCCTC 60.741 63.158 0.00 0.00 0.00 3.71
5343 8488 2.212110 ACTACCTGTTCCCGCCGTT 61.212 57.895 0.00 0.00 0.00 4.44
5344 8489 2.602568 ACTACCTGTTCCCGCCGT 60.603 61.111 0.00 0.00 0.00 5.68
5351 8496 2.753452 TCTGGATCGTCACTACCTGTTC 59.247 50.000 0.00 0.00 0.00 3.18
5359 8504 1.276421 CCCTTGTTCTGGATCGTCACT 59.724 52.381 0.00 0.00 0.00 3.41
5373 8518 2.612115 CCTCCTCTGCCCCCTTGT 60.612 66.667 0.00 0.00 0.00 3.16
5379 8524 2.741055 GCTTCTCCCTCCTCTGCCC 61.741 68.421 0.00 0.00 0.00 5.36
5433 8578 1.920610 AGCAGCAGAGCATTTTTCCT 58.079 45.000 0.00 0.00 36.85 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.