Multiple sequence alignment - TraesCS6A01G402000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G402000 chr6A 100.000 4495 0 0 1 4495 610202761 610207255 0.000000e+00 8301.0
1 TraesCS6A01G402000 chr6A 85.138 471 41 17 3058 3523 610190581 610190135 5.300000e-124 455.0
2 TraesCS6A01G402000 chr6A 87.629 97 12 0 3747 3843 610190104 610190008 3.680000e-21 113.0
3 TraesCS6A01G402000 chr6B 90.702 2108 102 39 297 2359 706910187 706912245 0.000000e+00 2721.0
4 TraesCS6A01G402000 chr6B 88.573 1584 120 28 2428 3975 706912110 706913668 0.000000e+00 1866.0
5 TraesCS6A01G402000 chr6B 87.302 441 23 10 3784 4194 706935351 706935788 1.460000e-129 473.0
6 TraesCS6A01G402000 chr6B 87.410 278 16 7 3525 3793 706915842 706916109 7.310000e-78 302.0
7 TraesCS6A01G402000 chr6B 87.243 243 24 7 1 240 706909949 706910187 2.060000e-68 270.0
8 TraesCS6A01G402000 chr6B 89.781 137 14 0 2060 2196 77474794 77474658 4.620000e-40 176.0
9 TraesCS6A01G402000 chr6B 91.781 73 3 2 4287 4356 706935786 706935858 1.030000e-16 99.0
10 TraesCS6A01G402000 chr6B 90.000 50 4 1 250 299 227646329 227646377 3.750000e-06 63.9
11 TraesCS6A01G402000 chr6D 90.444 2093 108 40 297 2342 463550204 463548157 0.000000e+00 2673.0
12 TraesCS6A01G402000 chr6D 86.858 1461 107 33 2416 3817 463548297 463546863 0.000000e+00 1555.0
13 TraesCS6A01G402000 chr6D 89.286 924 64 18 3055 3957 463617969 463618878 0.000000e+00 1125.0
14 TraesCS6A01G402000 chr6D 85.121 289 21 11 3950 4218 463619082 463619368 4.430000e-70 276.0
15 TraesCS6A01G402000 chr6D 85.490 255 21 7 1 240 463550457 463550204 7.460000e-63 252.0
16 TraesCS6A01G402000 chr6D 92.381 105 8 0 4277 4381 463619332 463619436 2.800000e-32 150.0
17 TraesCS6A01G402000 chr4D 84.625 774 87 21 2638 3382 59467972 59468742 0.000000e+00 741.0
18 TraesCS6A01G402000 chr4D 81.850 573 98 5 1113 1682 504328889 504329458 1.130000e-130 477.0
19 TraesCS6A01G402000 chr4D 85.099 302 27 9 2099 2388 59467629 59467924 4.400000e-75 292.0
20 TraesCS6A01G402000 chr4D 81.455 275 47 3 3219 3491 477507107 477506835 5.850000e-54 222.0
21 TraesCS6A01G402000 chr1D 83.562 584 90 6 1092 1672 194927317 194926737 3.960000e-150 542.0
22 TraesCS6A01G402000 chr1D 79.630 594 115 6 1092 1682 296489235 296489825 5.380000e-114 422.0
23 TraesCS6A01G402000 chr1D 93.333 60 3 1 4216 4275 422599847 422599905 2.230000e-13 87.9
24 TraesCS6A01G402000 chr1B 83.562 584 90 6 1092 1672 270792753 270793333 3.960000e-150 542.0
25 TraesCS6A01G402000 chr1B 79.798 594 114 6 1092 1682 398006020 398006610 1.160000e-115 427.0
26 TraesCS6A01G402000 chr1A 83.562 584 90 6 1092 1672 243162849 243162269 3.960000e-150 542.0
27 TraesCS6A01G402000 chr5A 81.675 573 99 5 1113 1682 688973657 688974226 5.260000e-129 472.0
28 TraesCS6A01G402000 chr5A 89.189 148 16 0 2053 2200 310018902 310019049 7.680000e-43 185.0
29 TraesCS6A01G402000 chr4B 83.099 284 44 3 3214 3495 602448967 602448686 5.770000e-64 255.0
30 TraesCS6A01G402000 chr4B 80.282 284 45 10 3203 3482 650962527 650962803 2.120000e-48 204.0
31 TraesCS6A01G402000 chr4B 96.154 52 2 0 4214 4265 658021462 658021513 8.010000e-13 86.1
32 TraesCS6A01G402000 chr4A 81.818 275 46 3 3219 3491 684269728 684269456 1.260000e-55 228.0
33 TraesCS6A01G402000 chr4A 100.000 28 0 0 3714 3741 728507226 728507253 8.000000e-03 52.8
34 TraesCS6A01G402000 chr5B 90.541 148 14 0 2053 2200 533556327 533556474 3.550000e-46 196.0
35 TraesCS6A01G402000 chr5D 89.437 142 15 0 2058 2199 61862233 61862374 3.570000e-41 180.0
36 TraesCS6A01G402000 chr5D 90.769 65 5 1 4211 4275 419401686 419401749 8.010000e-13 86.1
37 TraesCS6A01G402000 chr2D 100.000 39 0 0 4224 4262 620667716 620667678 6.240000e-09 73.1
38 TraesCS6A01G402000 chr7A 85.455 55 7 1 244 298 520511710 520511763 6.280000e-04 56.5
39 TraesCS6A01G402000 chr3A 100.000 30 0 0 267 296 37441592 37441621 6.280000e-04 56.5
40 TraesCS6A01G402000 chr3A 96.875 32 1 0 266 297 9445620 9445589 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G402000 chr6A 610202761 610207255 4494 False 8301.000000 8301 100.000000 1 4495 1 chr6A.!!$F1 4494
1 TraesCS6A01G402000 chr6A 610190008 610190581 573 True 284.000000 455 86.383500 3058 3843 2 chr6A.!!$R1 785
2 TraesCS6A01G402000 chr6B 706909949 706916109 6160 False 1289.750000 2721 88.482000 1 3975 4 chr6B.!!$F2 3974
3 TraesCS6A01G402000 chr6B 706935351 706935858 507 False 286.000000 473 89.541500 3784 4356 2 chr6B.!!$F3 572
4 TraesCS6A01G402000 chr6D 463546863 463550457 3594 True 1493.333333 2673 87.597333 1 3817 3 chr6D.!!$R1 3816
5 TraesCS6A01G402000 chr6D 463617969 463619436 1467 False 517.000000 1125 88.929333 3055 4381 3 chr6D.!!$F1 1326
6 TraesCS6A01G402000 chr4D 59467629 59468742 1113 False 516.500000 741 84.862000 2099 3382 2 chr4D.!!$F2 1283
7 TraesCS6A01G402000 chr4D 504328889 504329458 569 False 477.000000 477 81.850000 1113 1682 1 chr4D.!!$F1 569
8 TraesCS6A01G402000 chr1D 194926737 194927317 580 True 542.000000 542 83.562000 1092 1672 1 chr1D.!!$R1 580
9 TraesCS6A01G402000 chr1D 296489235 296489825 590 False 422.000000 422 79.630000 1092 1682 1 chr1D.!!$F1 590
10 TraesCS6A01G402000 chr1B 270792753 270793333 580 False 542.000000 542 83.562000 1092 1672 1 chr1B.!!$F1 580
11 TraesCS6A01G402000 chr1B 398006020 398006610 590 False 427.000000 427 79.798000 1092 1682 1 chr1B.!!$F2 590
12 TraesCS6A01G402000 chr1A 243162269 243162849 580 True 542.000000 542 83.562000 1092 1672 1 chr1A.!!$R1 580
13 TraesCS6A01G402000 chr5A 688973657 688974226 569 False 472.000000 472 81.675000 1113 1682 1 chr5A.!!$F2 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
706 754 0.172352 CTCCTCCTCAGCGTGTTCTC 59.828 60.0 0.00 0.00 0.0 2.87 F
2204 2296 0.032678 AACTGTCTGTCCGTCTGCAG 59.967 55.0 7.63 7.63 0.0 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2395 2522 0.179056 CCTGTTGGTTCACGGTGACT 60.179 55.0 10.97 0.0 0.00 3.41 R
3943 4187 0.107508 AGCATGGTGAAGATGGACCG 60.108 55.0 0.00 0.0 34.69 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.806380 TGTCAATTTTGTGCCAGCAAAT 58.194 36.364 0.00 0.00 38.05 2.32
47 48 3.560896 GTCAATTTTGTGCCAGCAAATGT 59.439 39.130 0.00 0.00 38.05 2.71
110 113 4.336713 ACCAAGTCAAGAGCAAGTCTTTTC 59.663 41.667 0.00 0.00 43.54 2.29
123 126 7.328737 AGCAAGTCTTTTCGTACCAGTATAAT 58.671 34.615 0.00 0.00 0.00 1.28
157 160 4.021719 CCTCTCTTTTTCATGCACCATTGT 60.022 41.667 0.00 0.00 0.00 2.71
168 182 4.412796 TGCACCATTGTCCAATCAAAAA 57.587 36.364 0.00 0.00 0.00 1.94
172 186 5.503846 GCACCATTGTCCAATCAAAAACAAC 60.504 40.000 0.00 0.00 34.71 3.32
181 195 1.490574 TCAAAAACAACCCCCAGTGG 58.509 50.000 0.63 0.63 0.00 4.00
182 196 0.179059 CAAAAACAACCCCCAGTGGC 60.179 55.000 2.61 0.00 0.00 5.01
191 205 0.988145 CCCCCAGTGGCAATCCTAGA 60.988 60.000 2.61 0.00 0.00 2.43
213 228 9.284968 CTAGATTAAGGAGGAAAACAAGAACAA 57.715 33.333 0.00 0.00 0.00 2.83
253 269 7.772332 AAAATGTACTTCTCCTACAATAGCG 57.228 36.000 0.00 0.00 0.00 4.26
254 270 6.466885 AATGTACTTCTCCTACAATAGCGT 57.533 37.500 0.00 0.00 0.00 5.07
255 271 7.578310 AATGTACTTCTCCTACAATAGCGTA 57.422 36.000 0.00 0.00 0.00 4.42
256 272 7.578310 ATGTACTTCTCCTACAATAGCGTAA 57.422 36.000 0.00 0.00 0.00 3.18
257 273 7.395190 TGTACTTCTCCTACAATAGCGTAAA 57.605 36.000 0.00 0.00 0.00 2.01
258 274 7.829725 TGTACTTCTCCTACAATAGCGTAAAA 58.170 34.615 0.00 0.00 0.00 1.52
259 275 8.306038 TGTACTTCTCCTACAATAGCGTAAAAA 58.694 33.333 0.00 0.00 0.00 1.94
281 297 5.934935 AACGCCCTTATATTATGAAACGG 57.065 39.130 0.00 0.00 0.00 4.44
282 298 5.217978 ACGCCCTTATATTATGAAACGGA 57.782 39.130 0.00 0.00 0.00 4.69
283 299 5.235516 ACGCCCTTATATTATGAAACGGAG 58.764 41.667 0.00 0.00 0.00 4.63
284 300 4.630069 CGCCCTTATATTATGAAACGGAGG 59.370 45.833 0.00 0.00 0.00 4.30
285 301 4.941873 GCCCTTATATTATGAAACGGAGGG 59.058 45.833 0.00 0.00 43.30 4.30
286 302 5.280317 GCCCTTATATTATGAAACGGAGGGA 60.280 44.000 8.71 0.00 43.15 4.20
287 303 6.407202 CCCTTATATTATGAAACGGAGGGAG 58.593 44.000 0.00 0.00 43.15 4.30
288 304 6.013639 CCCTTATATTATGAAACGGAGGGAGT 60.014 42.308 0.00 0.00 43.15 3.85
289 305 7.179694 CCCTTATATTATGAAACGGAGGGAGTA 59.820 40.741 0.00 0.00 43.15 2.59
290 306 8.033626 CCTTATATTATGAAACGGAGGGAGTAC 58.966 40.741 0.00 0.00 0.00 2.73
291 307 8.716674 TTATATTATGAAACGGAGGGAGTACT 57.283 34.615 0.00 0.00 0.00 2.73
292 308 9.812347 TTATATTATGAAACGGAGGGAGTACTA 57.188 33.333 0.00 0.00 0.00 1.82
293 309 8.896722 ATATTATGAAACGGAGGGAGTACTAT 57.103 34.615 0.00 0.00 0.00 2.12
294 310 9.986157 ATATTATGAAACGGAGGGAGTACTATA 57.014 33.333 0.00 0.00 0.00 1.31
295 311 7.516198 TTATGAAACGGAGGGAGTACTATAC 57.484 40.000 0.00 0.00 0.00 1.47
304 320 5.045286 GGAGGGAGTACTATACTATTCCCGA 60.045 48.000 11.75 0.00 42.50 5.14
307 323 5.241662 GGAGTACTATACTATTCCCGACGT 58.758 45.833 0.00 0.00 39.59 4.34
309 325 4.926238 AGTACTATACTATTCCCGACGTCG 59.074 45.833 30.33 30.33 37.23 5.12
362 378 4.348656 CAAATTCTCAACAGCATCCATCG 58.651 43.478 0.00 0.00 0.00 3.84
431 456 2.358737 GTTGGTCCGGCTCCACAG 60.359 66.667 15.90 0.00 34.45 3.66
444 469 2.353958 CACAGGAGCCAGCCACAT 59.646 61.111 0.00 0.00 0.00 3.21
589 627 1.926511 GCTCGCCAAGTGGTCAATGG 61.927 60.000 0.00 0.00 37.57 3.16
617 655 3.068873 TGCCAAGTGTTCCATTGTTAACC 59.931 43.478 2.48 0.00 0.00 2.85
623 661 5.941788 AGTGTTCCATTGTTAACCTCTTCT 58.058 37.500 2.48 0.00 0.00 2.85
628 666 3.191371 CCATTGTTAACCTCTTCTGGTGC 59.809 47.826 2.48 0.00 40.73 5.01
640 681 2.561478 TCTGGTGCCAAGTAGTTTCC 57.439 50.000 0.00 0.00 0.00 3.13
706 754 0.172352 CTCCTCCTCAGCGTGTTCTC 59.828 60.000 0.00 0.00 0.00 2.87
712 760 1.949847 CTCAGCGTGTTCTCGGGGAT 61.950 60.000 0.00 0.00 0.00 3.85
713 761 0.681887 TCAGCGTGTTCTCGGGGATA 60.682 55.000 0.00 0.00 0.00 2.59
714 762 0.527817 CAGCGTGTTCTCGGGGATAC 60.528 60.000 0.00 0.00 0.00 2.24
751 799 4.411136 GGCTTCTAGCTGACGAGC 57.589 61.111 0.00 0.17 46.64 5.03
860 916 1.744741 GGCTCTTGTCCAGCTCTGC 60.745 63.158 0.00 0.00 37.05 4.26
866 923 1.952296 CTTGTCCAGCTCTGCTTTTGT 59.048 47.619 0.00 0.00 36.40 2.83
872 929 2.334307 GCTCTGCTTTTGTGAGCCA 58.666 52.632 0.00 0.00 45.12 4.75
950 1015 6.793505 TTCTTTCTAGGTGGAGGATTAGTC 57.206 41.667 0.00 0.00 0.00 2.59
959 1024 1.757699 GGAGGATTAGTCAGGTCGCTT 59.242 52.381 0.00 0.00 0.00 4.68
966 1031 0.394565 AGTCAGGTCGCTTGCTCTTT 59.605 50.000 0.00 0.00 0.00 2.52
983 1048 5.122869 TGCTCTTTTTGAATCGAATCTGGAG 59.877 40.000 1.55 3.91 0.00 3.86
984 1049 5.448360 GCTCTTTTTGAATCGAATCTGGAGG 60.448 44.000 1.55 0.00 0.00 4.30
985 1050 5.804639 TCTTTTTGAATCGAATCTGGAGGA 58.195 37.500 1.55 0.00 0.00 3.71
986 1051 5.877012 TCTTTTTGAATCGAATCTGGAGGAG 59.123 40.000 1.55 0.00 0.00 3.69
992 1057 1.847088 TCGAATCTGGAGGAGAGGAGA 59.153 52.381 0.00 0.00 32.80 3.71
1016 1081 4.101430 GGAGAGGAGATTCTTGCAGATTCT 59.899 45.833 9.07 9.07 37.58 2.40
1054 1119 5.426504 GAGAAGCAGAGATTTGGATCTTGA 58.573 41.667 0.00 0.00 42.66 3.02
1828 1900 3.827898 CTCCCCGACGGCTCTGTC 61.828 72.222 8.86 0.00 35.49 3.51
1968 2049 3.316573 GAGTGACGGCCAAGGAGGG 62.317 68.421 2.24 0.00 38.09 4.30
2204 2296 0.032678 AACTGTCTGTCCGTCTGCAG 59.967 55.000 7.63 7.63 0.00 4.41
2217 2309 2.869801 CGTCTGCAGTTAACTGAACCAA 59.130 45.455 34.43 14.30 46.59 3.67
2220 2312 4.095782 GTCTGCAGTTAACTGAACCAACAA 59.904 41.667 34.43 11.68 46.59 2.83
2284 2411 5.884232 TGAATTCATCAGTTCCCATCTTGAG 59.116 40.000 3.38 0.00 33.04 3.02
2287 2414 3.840078 TCATCAGTTCCCATCTTGAGTGA 59.160 43.478 0.00 0.00 0.00 3.41
2288 2415 4.286808 TCATCAGTTCCCATCTTGAGTGAA 59.713 41.667 0.00 0.00 0.00 3.18
2289 2416 4.705110 TCAGTTCCCATCTTGAGTGAAA 57.295 40.909 0.00 0.00 0.00 2.69
2290 2417 4.389374 TCAGTTCCCATCTTGAGTGAAAC 58.611 43.478 0.00 0.00 0.00 2.78
2328 2455 7.881643 TGAAATAATTCAAATGGTTTGGTCG 57.118 32.000 2.92 0.00 42.47 4.79
2329 2456 7.661968 TGAAATAATTCAAATGGTTTGGTCGA 58.338 30.769 2.92 0.00 42.47 4.20
2330 2457 8.144478 TGAAATAATTCAAATGGTTTGGTCGAA 58.856 29.630 2.92 0.00 42.47 3.71
2331 2458 9.150348 GAAATAATTCAAATGGTTTGGTCGAAT 57.850 29.630 2.92 0.00 40.98 3.34
2332 2459 9.500785 AAATAATTCAAATGGTTTGGTCGAATT 57.499 25.926 0.00 0.00 40.98 2.17
2333 2460 9.500785 AATAATTCAAATGGTTTGGTCGAATTT 57.499 25.926 0.00 0.00 40.98 1.82
2335 2462 8.894768 AATTCAAATGGTTTGGTCGAATTTAA 57.105 26.923 2.92 0.00 40.98 1.52
2336 2463 7.701809 TTCAAATGGTTTGGTCGAATTTAAC 57.298 32.000 2.92 0.00 40.98 2.01
2337 2464 6.806751 TCAAATGGTTTGGTCGAATTTAACA 58.193 32.000 2.92 0.00 40.98 2.41
2338 2465 6.697892 TCAAATGGTTTGGTCGAATTTAACAC 59.302 34.615 2.92 0.00 40.98 3.32
2339 2466 4.571372 TGGTTTGGTCGAATTTAACACC 57.429 40.909 0.00 0.00 0.00 4.16
2340 2467 4.208746 TGGTTTGGTCGAATTTAACACCT 58.791 39.130 0.00 0.00 0.00 4.00
2341 2468 4.036971 TGGTTTGGTCGAATTTAACACCTG 59.963 41.667 0.00 0.00 0.00 4.00
2342 2469 4.037089 GGTTTGGTCGAATTTAACACCTGT 59.963 41.667 0.00 0.00 0.00 4.00
2343 2470 5.450826 GGTTTGGTCGAATTTAACACCTGTT 60.451 40.000 0.00 0.00 41.73 3.16
2344 2471 5.838531 TTGGTCGAATTTAACACCTGTTT 57.161 34.783 0.00 0.00 39.31 2.83
2345 2472 6.939132 TTGGTCGAATTTAACACCTGTTTA 57.061 33.333 0.00 0.00 39.31 2.01
2346 2473 7.513371 TTGGTCGAATTTAACACCTGTTTAT 57.487 32.000 0.00 0.00 39.31 1.40
2347 2474 8.618702 TTGGTCGAATTTAACACCTGTTTATA 57.381 30.769 0.00 0.00 39.31 0.98
2348 2475 8.031848 TGGTCGAATTTAACACCTGTTTATAC 57.968 34.615 0.00 0.00 39.31 1.47
2349 2476 7.660617 TGGTCGAATTTAACACCTGTTTATACA 59.339 33.333 0.00 0.00 39.31 2.29
2350 2477 8.505625 GGTCGAATTTAACACCTGTTTATACAA 58.494 33.333 0.00 0.00 39.31 2.41
2351 2478 9.881529 GTCGAATTTAACACCTGTTTATACAAA 57.118 29.630 0.00 0.00 39.31 2.83
2373 2500 9.653287 ACAAAATAGATTACTGTTCGAGATTGA 57.347 29.630 0.00 0.00 0.00 2.57
2377 2504 9.823647 AATAGATTACTGTTCGAGATTGATTGT 57.176 29.630 0.00 0.00 0.00 2.71
2378 2505 9.823647 ATAGATTACTGTTCGAGATTGATTGTT 57.176 29.630 0.00 0.00 0.00 2.83
2379 2506 8.190888 AGATTACTGTTCGAGATTGATTGTTC 57.809 34.615 0.00 0.00 0.00 3.18
2380 2507 7.819415 AGATTACTGTTCGAGATTGATTGTTCA 59.181 33.333 0.00 0.00 0.00 3.18
2381 2508 5.597813 ACTGTTCGAGATTGATTGTTCAC 57.402 39.130 0.00 0.00 0.00 3.18
2382 2509 5.056480 ACTGTTCGAGATTGATTGTTCACA 58.944 37.500 0.00 0.00 0.00 3.58
2383 2510 5.178252 ACTGTTCGAGATTGATTGTTCACAG 59.822 40.000 4.07 4.07 0.00 3.66
2384 2511 4.083855 TGTTCGAGATTGATTGTTCACAGC 60.084 41.667 0.00 0.00 0.00 4.40
2385 2512 3.663025 TCGAGATTGATTGTTCACAGCA 58.337 40.909 0.00 0.00 0.00 4.41
2386 2513 4.064388 TCGAGATTGATTGTTCACAGCAA 58.936 39.130 0.00 0.00 0.00 3.91
2387 2514 4.514816 TCGAGATTGATTGTTCACAGCAAA 59.485 37.500 0.00 0.00 0.00 3.68
2388 2515 4.614284 CGAGATTGATTGTTCACAGCAAAC 59.386 41.667 0.00 1.16 0.00 2.93
2389 2516 5.561532 CGAGATTGATTGTTCACAGCAAACT 60.562 40.000 6.94 6.94 32.36 2.66
2390 2517 6.152932 AGATTGATTGTTCACAGCAAACTT 57.847 33.333 0.00 0.00 28.57 2.66
2391 2518 6.211515 AGATTGATTGTTCACAGCAAACTTC 58.788 36.000 0.00 0.00 28.57 3.01
2392 2519 5.581126 TTGATTGTTCACAGCAAACTTCT 57.419 34.783 0.00 0.00 0.00 2.85
2393 2520 6.691754 TTGATTGTTCACAGCAAACTTCTA 57.308 33.333 0.00 0.00 0.00 2.10
2394 2521 6.060028 TGATTGTTCACAGCAAACTTCTAC 57.940 37.500 0.00 0.00 0.00 2.59
2395 2522 5.588246 TGATTGTTCACAGCAAACTTCTACA 59.412 36.000 0.00 0.00 0.00 2.74
2396 2523 5.484173 TTGTTCACAGCAAACTTCTACAG 57.516 39.130 0.00 0.00 0.00 2.74
2397 2524 4.513442 TGTTCACAGCAAACTTCTACAGT 58.487 39.130 0.00 0.00 37.30 3.55
2398 2525 4.570772 TGTTCACAGCAAACTTCTACAGTC 59.429 41.667 0.00 0.00 32.94 3.51
2399 2526 4.400529 TCACAGCAAACTTCTACAGTCA 57.599 40.909 0.00 0.00 32.94 3.41
2400 2527 4.119862 TCACAGCAAACTTCTACAGTCAC 58.880 43.478 0.00 0.00 32.94 3.67
2401 2528 3.248602 CACAGCAAACTTCTACAGTCACC 59.751 47.826 0.00 0.00 32.94 4.02
2402 2529 2.476619 CAGCAAACTTCTACAGTCACCG 59.523 50.000 0.00 0.00 32.94 4.94
2403 2530 2.102588 AGCAAACTTCTACAGTCACCGT 59.897 45.455 0.00 0.00 32.94 4.83
2404 2531 2.221055 GCAAACTTCTACAGTCACCGTG 59.779 50.000 0.00 0.00 32.94 4.94
2405 2532 3.713288 CAAACTTCTACAGTCACCGTGA 58.287 45.455 0.00 0.00 32.94 4.35
2406 2533 4.116961 CAAACTTCTACAGTCACCGTGAA 58.883 43.478 1.88 0.00 32.94 3.18
2407 2534 3.366440 ACTTCTACAGTCACCGTGAAC 57.634 47.619 1.88 0.00 0.00 3.18
2408 2535 2.035576 ACTTCTACAGTCACCGTGAACC 59.964 50.000 1.88 0.00 0.00 3.62
2409 2536 1.694844 TCTACAGTCACCGTGAACCA 58.305 50.000 1.88 0.00 0.00 3.67
2410 2537 2.033372 TCTACAGTCACCGTGAACCAA 58.967 47.619 1.88 0.00 0.00 3.67
2411 2538 2.132762 CTACAGTCACCGTGAACCAAC 58.867 52.381 1.88 0.00 0.00 3.77
2412 2539 0.250793 ACAGTCACCGTGAACCAACA 59.749 50.000 1.88 0.00 0.00 3.33
2413 2540 0.937304 CAGTCACCGTGAACCAACAG 59.063 55.000 1.88 0.00 0.00 3.16
2414 2541 0.179056 AGTCACCGTGAACCAACAGG 60.179 55.000 1.88 0.00 0.00 4.00
2415 2542 0.463116 GTCACCGTGAACCAACAGGT 60.463 55.000 1.88 0.00 37.19 4.00
2416 2543 2.021722 CACCGTGAACCAACAGGTG 58.978 57.895 0.00 0.00 45.01 4.00
2417 2544 0.746563 CACCGTGAACCAACAGGTGT 60.747 55.000 4.89 0.00 45.19 4.16
2418 2545 0.463116 ACCGTGAACCAACAGGTGTC 60.463 55.000 0.00 0.00 35.32 3.67
2419 2546 0.179056 CCGTGAACCAACAGGTGTCT 60.179 55.000 0.00 0.00 35.32 3.41
2420 2547 0.937304 CGTGAACCAACAGGTGTCTG 59.063 55.000 0.00 0.00 46.10 3.51
2429 2556 3.481009 CAGGTGTCTGTCAGTCGTC 57.519 57.895 0.00 0.00 36.30 4.20
2430 2557 0.955178 CAGGTGTCTGTCAGTCGTCT 59.045 55.000 0.00 0.00 36.30 4.18
2431 2558 0.955178 AGGTGTCTGTCAGTCGTCTG 59.045 55.000 3.03 3.03 42.54 3.51
2432 2559 0.669077 GGTGTCTGTCAGTCGTCTGT 59.331 55.000 9.48 0.00 41.91 3.41
2433 2560 1.600663 GGTGTCTGTCAGTCGTCTGTG 60.601 57.143 9.48 2.46 41.91 3.66
2434 2561 1.065701 GTGTCTGTCAGTCGTCTGTGT 59.934 52.381 9.48 0.00 41.91 3.72
2435 2562 2.289820 GTGTCTGTCAGTCGTCTGTGTA 59.710 50.000 9.48 0.00 41.91 2.90
2436 2563 2.289820 TGTCTGTCAGTCGTCTGTGTAC 59.710 50.000 9.48 1.78 41.91 2.90
2437 2564 2.289820 GTCTGTCAGTCGTCTGTGTACA 59.710 50.000 9.48 6.11 41.91 2.90
2438 2565 2.548480 TCTGTCAGTCGTCTGTGTACAG 59.452 50.000 17.78 17.78 41.39 2.74
2439 2566 2.290916 CTGTCAGTCGTCTGTGTACAGT 59.709 50.000 16.46 0.00 44.12 3.55
2440 2567 2.686405 TGTCAGTCGTCTGTGTACAGTT 59.314 45.455 11.44 0.00 44.12 3.16
2441 2568 3.878699 TGTCAGTCGTCTGTGTACAGTTA 59.121 43.478 11.44 0.00 44.12 2.24
2442 2569 4.336153 TGTCAGTCGTCTGTGTACAGTTAA 59.664 41.667 11.44 0.00 44.12 2.01
2443 2570 5.163632 TGTCAGTCGTCTGTGTACAGTTAAA 60.164 40.000 11.44 0.00 44.12 1.52
2444 2571 5.172771 GTCAGTCGTCTGTGTACAGTTAAAC 59.827 44.000 11.44 6.68 44.12 2.01
2445 2572 5.066893 TCAGTCGTCTGTGTACAGTTAAACT 59.933 40.000 11.44 8.46 44.12 2.66
2446 2573 5.173312 CAGTCGTCTGTGTACAGTTAAACTG 59.827 44.000 11.44 14.71 44.12 3.16
2447 2574 6.949895 CAGTCGTCTGTGTACAGTTAAACTGA 60.950 42.308 21.02 0.00 41.19 3.41
2448 2575 8.362433 CAGTCGTCTGTGTACAGTTAAACTGAA 61.362 40.741 21.02 0.00 41.19 3.02
2462 2589 7.694886 AGTTAAACTGAACTAACAAAGTCTGC 58.305 34.615 0.00 0.00 37.90 4.26
2463 2590 7.335924 AGTTAAACTGAACTAACAAAGTCTGCA 59.664 33.333 0.00 0.00 37.90 4.41
2464 2591 6.509418 AAACTGAACTAACAAAGTCTGCAA 57.491 33.333 0.00 0.00 37.50 4.08
2465 2592 5.741388 ACTGAACTAACAAAGTCTGCAAG 57.259 39.130 0.00 0.00 37.50 4.01
2466 2593 5.428253 ACTGAACTAACAAAGTCTGCAAGA 58.572 37.500 0.00 0.00 43.69 3.02
2482 2609 6.866480 TCTGCAAGATGAATTTACCAATTCC 58.134 36.000 5.45 0.00 42.25 3.01
2483 2610 5.976458 TGCAAGATGAATTTACCAATTCCC 58.024 37.500 5.45 0.00 45.53 3.97
2484 2611 5.483231 TGCAAGATGAATTTACCAATTCCCA 59.517 36.000 5.45 0.00 45.53 4.37
2485 2612 6.156602 TGCAAGATGAATTTACCAATTCCCAT 59.843 34.615 5.45 0.00 45.53 4.00
2486 2613 7.049754 GCAAGATGAATTTACCAATTCCCATT 58.950 34.615 5.45 0.00 45.53 3.16
2487 2614 7.553760 GCAAGATGAATTTACCAATTCCCATTT 59.446 33.333 5.45 0.00 45.53 2.32
2488 2615 9.452287 CAAGATGAATTTACCAATTCCCATTTT 57.548 29.630 5.45 0.00 45.53 1.82
2489 2616 9.452287 AAGATGAATTTACCAATTCCCATTTTG 57.548 29.630 5.45 0.00 45.53 2.44
2490 2617 8.824783 AGATGAATTTACCAATTCCCATTTTGA 58.175 29.630 5.45 0.00 45.53 2.69
2491 2618 9.447157 GATGAATTTACCAATTCCCATTTTGAA 57.553 29.630 5.45 0.00 45.53 2.69
2492 2619 9.978336 ATGAATTTACCAATTCCCATTTTGAAT 57.022 25.926 5.45 0.00 45.53 2.57
2493 2620 9.228949 TGAATTTACCAATTCCCATTTTGAATG 57.771 29.630 5.45 0.00 45.53 2.67
2494 2621 9.447157 GAATTTACCAATTCCCATTTTGAATGA 57.553 29.630 2.37 0.00 41.80 2.57
2495 2622 9.804977 AATTTACCAATTCCCATTTTGAATGAA 57.195 25.926 2.37 0.00 32.91 2.57
2496 2623 9.804977 ATTTACCAATTCCCATTTTGAATGAAA 57.195 25.926 2.37 0.00 32.91 2.69
2613 2786 8.747538 AACTAAAACTCACACCAGAATTACTT 57.252 30.769 0.00 0.00 0.00 2.24
2622 2795 7.375834 TCACACCAGAATTACTTACTACTGTG 58.624 38.462 0.00 0.00 0.00 3.66
2630 2803 5.748670 TTACTTACTACTGTGCATCCCAA 57.251 39.130 0.00 0.00 0.00 4.12
2717 2890 2.385013 TCTGTGGGATGTTCATCACG 57.615 50.000 13.64 0.00 33.25 4.35
2855 3028 1.135344 TCCAATGTCGCGTCGAATGTA 60.135 47.619 5.77 0.00 37.72 2.29
2912 3103 3.814625 TGCGGAATACATGCTCCATTTA 58.185 40.909 9.16 0.00 0.00 1.40
2916 3107 5.617751 GCGGAATACATGCTCCATTTATCAC 60.618 44.000 9.16 0.00 0.00 3.06
2925 3116 9.743581 ACATGCTCCATTTATCACAATATATGA 57.256 29.630 0.00 0.00 31.89 2.15
2967 3158 9.853555 TCGTCTATTTTTGTGCAAATTTCATAT 57.146 25.926 0.00 0.00 0.00 1.78
2983 3174 9.590451 AAATTTCATATATGCTTCCAAACTGTG 57.410 29.630 7.92 0.00 0.00 3.66
2985 3176 6.925610 TCATATATGCTTCCAAACTGTGAC 57.074 37.500 7.92 0.00 0.00 3.67
3003 3198 5.714047 TGTGACTAATCAGACAGCAGTAAG 58.286 41.667 0.00 0.00 34.75 2.34
3044 3239 3.549070 GCACGATTCATTTTTGGATCAGC 59.451 43.478 0.00 0.00 0.00 4.26
3045 3240 4.107622 CACGATTCATTTTTGGATCAGCC 58.892 43.478 0.00 0.00 37.10 4.85
3074 3272 9.241317 GCAATAATTTCTGAATGTGTTAGATGG 57.759 33.333 0.00 0.00 0.00 3.51
3082 3280 3.845781 ATGTGTTAGATGGTAGCCAGG 57.154 47.619 0.00 0.00 36.75 4.45
3087 3285 1.123077 TAGATGGTAGCCAGGCTGTG 58.877 55.000 25.59 6.19 40.10 3.66
3173 3374 2.353610 GCCAAATCCCCTGCACCAG 61.354 63.158 0.00 0.00 0.00 4.00
3202 3412 2.469274 ACTGACAGACTCTGCATTGG 57.531 50.000 10.08 0.00 34.37 3.16
3496 3706 3.558931 TCAGGAGCAACTGAACAAAGA 57.441 42.857 7.78 0.00 44.03 2.52
3497 3707 3.470709 TCAGGAGCAACTGAACAAAGAG 58.529 45.455 7.78 0.00 44.03 2.85
3506 3718 5.618640 GCAACTGAACAAAGAGAGCTTATGG 60.619 44.000 0.00 0.00 32.98 2.74
3510 3722 6.651225 ACTGAACAAAGAGAGCTTATGGTTAC 59.349 38.462 0.00 0.00 32.98 2.50
3516 3728 4.833390 AGAGAGCTTATGGTTACCAACAC 58.167 43.478 8.63 0.00 36.95 3.32
3525 3737 1.751924 GGTTACCAACACCAACAGCAA 59.248 47.619 0.00 0.00 34.04 3.91
3526 3738 2.480587 GGTTACCAACACCAACAGCAAC 60.481 50.000 0.00 0.00 34.04 4.17
3622 3839 1.882352 GCCTGTGGGGTAAGTCTTGTG 60.882 57.143 0.00 0.00 37.43 3.33
3626 3843 0.109723 TGGGGTAAGTCTTGTGCCAC 59.890 55.000 0.00 0.00 0.00 5.01
3702 3921 4.556233 GAGGCTTTTTGGGTTGTACATTC 58.444 43.478 0.00 0.00 0.00 2.67
3802 4044 7.433708 TGAGGTGTATATTTGTTCAGTGTTG 57.566 36.000 0.00 0.00 0.00 3.33
3943 4187 3.727419 GCATTCCATGTGCAACCTC 57.273 52.632 2.12 0.00 42.08 3.85
4106 4590 1.933853 GGAATGTGACATAGACGCCAC 59.066 52.381 0.00 0.00 0.00 5.01
4164 5351 3.882888 TCAAGCTTTGGTGTCCAAACTAG 59.117 43.478 9.51 2.82 46.92 2.57
4167 5354 5.043737 AGCTTTGGTGTCCAAACTAGTAA 57.956 39.130 9.51 0.00 46.92 2.24
4169 5356 4.820173 GCTTTGGTGTCCAAACTAGTAAGT 59.180 41.667 9.51 0.00 46.92 2.24
4170 5357 5.993441 GCTTTGGTGTCCAAACTAGTAAGTA 59.007 40.000 9.51 0.00 46.92 2.24
4171 5358 6.147328 GCTTTGGTGTCCAAACTAGTAAGTAG 59.853 42.308 9.51 0.00 46.92 2.57
4173 5360 7.549147 TTGGTGTCCAAACTAGTAAGTAGAT 57.451 36.000 0.00 0.00 40.92 1.98
4174 5361 6.931838 TGGTGTCCAAACTAGTAAGTAGATG 58.068 40.000 0.00 0.00 33.75 2.90
4175 5362 5.811100 GGTGTCCAAACTAGTAAGTAGATGC 59.189 44.000 0.00 0.00 33.75 3.91
4176 5363 6.351117 GGTGTCCAAACTAGTAAGTAGATGCT 60.351 42.308 0.00 0.00 33.75 3.79
4177 5364 7.147949 GGTGTCCAAACTAGTAAGTAGATGCTA 60.148 40.741 0.00 0.00 33.75 3.49
4178 5365 7.916450 GTGTCCAAACTAGTAAGTAGATGCTAG 59.084 40.741 0.00 0.00 40.29 3.42
4179 5366 7.614583 TGTCCAAACTAGTAAGTAGATGCTAGT 59.385 37.037 0.00 0.00 46.56 2.57
4184 5371 7.648039 ACTAGTAAGTAGATGCTAGTTTGCT 57.352 36.000 0.00 0.00 43.52 3.91
4185 5372 7.484975 ACTAGTAAGTAGATGCTAGTTTGCTG 58.515 38.462 0.00 0.00 43.52 4.41
4186 5373 6.287589 AGTAAGTAGATGCTAGTTTGCTGT 57.712 37.500 0.00 0.00 0.00 4.40
4188 5375 8.012957 AGTAAGTAGATGCTAGTTTGCTGTAT 57.987 34.615 0.00 0.00 0.00 2.29
4189 5376 7.923344 AGTAAGTAGATGCTAGTTTGCTGTATG 59.077 37.037 0.00 0.00 0.00 2.39
4252 6547 2.941720 GAGCTTGCCTCTTCGATTTCAT 59.058 45.455 0.00 0.00 37.60 2.57
4253 6548 3.350833 AGCTTGCCTCTTCGATTTCATT 58.649 40.909 0.00 0.00 0.00 2.57
4254 6549 3.760684 AGCTTGCCTCTTCGATTTCATTT 59.239 39.130 0.00 0.00 0.00 2.32
4256 6551 5.415701 AGCTTGCCTCTTCGATTTCATTTAA 59.584 36.000 0.00 0.00 0.00 1.52
4257 6552 6.071952 AGCTTGCCTCTTCGATTTCATTTAAA 60.072 34.615 0.00 0.00 0.00 1.52
4258 6553 6.252228 GCTTGCCTCTTCGATTTCATTTAAAG 59.748 38.462 0.00 0.00 0.00 1.85
4259 6554 7.447374 TTGCCTCTTCGATTTCATTTAAAGA 57.553 32.000 0.00 0.00 0.00 2.52
4260 6555 7.447374 TGCCTCTTCGATTTCATTTAAAGAA 57.553 32.000 0.00 0.00 0.00 2.52
4262 6557 8.522830 TGCCTCTTCGATTTCATTTAAAGAAAT 58.477 29.630 17.85 17.85 45.55 2.17
4278 6573 9.868277 TTTAAAGAAATCAAATGTTCACACTGT 57.132 25.926 0.00 0.00 0.00 3.55
4281 6576 9.467258 AAAGAAATCAAATGTTCACACTGTATG 57.533 29.630 0.00 0.00 0.00 2.39
4282 6577 8.394971 AGAAATCAAATGTTCACACTGTATGA 57.605 30.769 0.00 0.00 0.00 2.15
4342 6640 7.168135 CCAGTTTCTCTGTTTTCAGTTAAATGC 59.832 37.037 0.00 0.00 46.98 3.56
4345 6643 3.896122 TCTGTTTTCAGTTAAATGCGGC 58.104 40.909 0.00 0.00 46.98 6.53
4350 6648 1.062525 CAGTTAAATGCGGCCGAGC 59.937 57.895 33.48 13.47 37.71 5.03
4369 6667 1.821753 GCTCTGCTGGTCACTTCTCTA 59.178 52.381 0.00 0.00 0.00 2.43
4382 6680 2.567615 ACTTCTCTATGTGGCCTCGTTT 59.432 45.455 3.32 0.00 0.00 3.60
4383 6681 3.008049 ACTTCTCTATGTGGCCTCGTTTT 59.992 43.478 3.32 0.00 0.00 2.43
4384 6682 3.695830 TCTCTATGTGGCCTCGTTTTT 57.304 42.857 3.32 0.00 0.00 1.94
4405 6849 5.970501 TTTAGAAAAGGAGGATAGACCCC 57.029 43.478 0.00 0.00 40.05 4.95
4406 6850 2.777913 AGAAAAGGAGGATAGACCCCC 58.222 52.381 0.00 0.00 40.05 5.40
4407 6851 1.416772 GAAAAGGAGGATAGACCCCCG 59.583 57.143 0.00 0.00 40.05 5.73
4408 6852 0.640495 AAAGGAGGATAGACCCCCGA 59.360 55.000 0.00 0.00 40.05 5.14
4409 6853 0.105607 AAGGAGGATAGACCCCCGAC 60.106 60.000 0.00 0.00 40.05 4.79
4410 6854 1.533513 GGAGGATAGACCCCCGACC 60.534 68.421 0.00 0.00 40.05 4.79
4411 6855 1.542679 GAGGATAGACCCCCGACCT 59.457 63.158 0.00 0.00 40.05 3.85
4412 6856 0.105607 GAGGATAGACCCCCGACCTT 60.106 60.000 0.00 0.00 40.05 3.50
4413 6857 0.105607 AGGATAGACCCCCGACCTTC 60.106 60.000 0.00 0.00 40.05 3.46
4415 6859 1.718280 GATAGACCCCCGACCTTCAT 58.282 55.000 0.00 0.00 0.00 2.57
4418 6862 1.718280 AGACCCCCGACCTTCATATC 58.282 55.000 0.00 0.00 0.00 1.63
4420 6864 1.344763 GACCCCCGACCTTCATATCTG 59.655 57.143 0.00 0.00 0.00 2.90
4421 6865 1.062428 ACCCCCGACCTTCATATCTGA 60.062 52.381 0.00 0.00 0.00 3.27
4425 6869 3.557898 CCCCGACCTTCATATCTGAATGG 60.558 52.174 0.00 1.87 40.52 3.16
4426 6870 3.071602 CCCGACCTTCATATCTGAATGGT 59.928 47.826 11.91 11.91 41.52 3.55
4427 6871 4.060900 CCGACCTTCATATCTGAATGGTG 58.939 47.826 15.04 9.84 40.20 4.17
4428 6872 3.496130 CGACCTTCATATCTGAATGGTGC 59.504 47.826 15.04 8.97 40.20 5.01
4429 6873 4.454678 GACCTTCATATCTGAATGGTGCA 58.545 43.478 15.04 0.00 40.20 4.57
4430 6874 5.057843 ACCTTCATATCTGAATGGTGCAT 57.942 39.130 11.52 0.00 40.52 3.96
4431 6875 4.825634 ACCTTCATATCTGAATGGTGCATG 59.174 41.667 11.52 0.00 40.52 4.06
4433 6877 3.822940 TCATATCTGAATGGTGCATGCA 58.177 40.909 18.46 18.46 0.00 3.96
4434 6878 4.208746 TCATATCTGAATGGTGCATGCAA 58.791 39.130 24.58 8.53 27.80 4.08
4435 6879 4.830600 TCATATCTGAATGGTGCATGCAAT 59.169 37.500 24.58 10.89 27.80 3.56
4436 6880 3.728076 ATCTGAATGGTGCATGCAATC 57.272 42.857 24.58 17.97 27.80 2.67
4437 6881 2.448453 TCTGAATGGTGCATGCAATCA 58.552 42.857 24.58 23.01 27.80 2.57
4440 6884 3.028130 TGAATGGTGCATGCAATCATCT 58.972 40.909 27.35 20.12 0.00 2.90
4441 6885 3.449377 TGAATGGTGCATGCAATCATCTT 59.551 39.130 27.35 18.61 0.00 2.40
4442 6886 4.645588 TGAATGGTGCATGCAATCATCTTA 59.354 37.500 27.35 17.95 0.00 2.10
4443 6887 5.303333 TGAATGGTGCATGCAATCATCTTAT 59.697 36.000 27.35 17.32 0.00 1.73
4444 6888 5.801531 ATGGTGCATGCAATCATCTTATT 57.198 34.783 24.58 5.08 0.00 1.40
4446 6890 6.712179 TGGTGCATGCAATCATCTTATTAA 57.288 33.333 24.58 0.00 0.00 1.40
4447 6891 7.292713 TGGTGCATGCAATCATCTTATTAAT 57.707 32.000 24.58 0.00 0.00 1.40
4448 6892 7.728148 TGGTGCATGCAATCATCTTATTAATT 58.272 30.769 24.58 0.00 0.00 1.40
4450 6894 9.048446 GGTGCATGCAATCATCTTATTAATTTT 57.952 29.630 24.58 0.00 0.00 1.82
4481 6925 9.375974 AGAGGCCATATAAAGTAATACAGTACA 57.624 33.333 5.01 0.00 0.00 2.90
4484 6928 9.938280 GGCCATATAAAGTAATACAGTACATCA 57.062 33.333 0.00 0.00 0.00 3.07
4489 6933 6.910536 AAAGTAATACAGTACATCAGCAGC 57.089 37.500 0.00 0.00 0.00 5.25
4490 6934 4.950050 AGTAATACAGTACATCAGCAGCC 58.050 43.478 0.00 0.00 0.00 4.85
4491 6935 4.651503 AGTAATACAGTACATCAGCAGCCT 59.348 41.667 0.00 0.00 0.00 4.58
4492 6936 2.967599 TACAGTACATCAGCAGCCTG 57.032 50.000 0.00 0.00 40.54 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 69 3.244596 GGTGGTAGAGAATGATTAGGGGC 60.245 52.174 0.00 0.00 0.00 5.80
140 143 4.412796 TTGGACAATGGTGCATGAAAAA 57.587 36.364 0.00 0.00 45.24 1.94
157 160 2.703007 CTGGGGGTTGTTTTTGATTGGA 59.297 45.455 0.00 0.00 0.00 3.53
168 182 1.228862 GATTGCCACTGGGGGTTGT 60.229 57.895 0.00 0.00 37.04 3.32
172 186 0.988145 TCTAGGATTGCCACTGGGGG 60.988 60.000 0.00 0.00 37.04 5.40
181 195 6.828785 TGTTTTCCTCCTTAATCTAGGATTGC 59.171 38.462 3.37 0.00 43.24 3.56
182 196 8.807948 TTGTTTTCCTCCTTAATCTAGGATTG 57.192 34.615 3.37 0.00 43.24 2.67
256 272 7.067251 TCCGTTTCATAATATAAGGGCGTTTTT 59.933 33.333 0.00 0.00 0.00 1.94
257 273 6.543100 TCCGTTTCATAATATAAGGGCGTTTT 59.457 34.615 0.00 0.00 0.00 2.43
258 274 6.056884 TCCGTTTCATAATATAAGGGCGTTT 58.943 36.000 0.00 0.00 0.00 3.60
259 275 5.613329 TCCGTTTCATAATATAAGGGCGTT 58.387 37.500 0.00 0.00 0.00 4.84
260 276 5.217978 TCCGTTTCATAATATAAGGGCGT 57.782 39.130 0.00 0.00 0.00 5.68
261 277 4.630069 CCTCCGTTTCATAATATAAGGGCG 59.370 45.833 0.00 0.00 0.00 6.13
262 278 4.941873 CCCTCCGTTTCATAATATAAGGGC 59.058 45.833 0.00 0.00 34.93 5.19
263 279 6.013639 ACTCCCTCCGTTTCATAATATAAGGG 60.014 42.308 0.00 0.00 41.93 3.95
264 280 7.005709 ACTCCCTCCGTTTCATAATATAAGG 57.994 40.000 0.00 0.00 0.00 2.69
265 281 8.804204 AGTACTCCCTCCGTTTCATAATATAAG 58.196 37.037 0.00 0.00 0.00 1.73
266 282 8.716674 AGTACTCCCTCCGTTTCATAATATAA 57.283 34.615 0.00 0.00 0.00 0.98
267 283 9.986157 ATAGTACTCCCTCCGTTTCATAATATA 57.014 33.333 0.00 0.00 0.00 0.86
268 284 8.896722 ATAGTACTCCCTCCGTTTCATAATAT 57.103 34.615 0.00 0.00 0.00 1.28
269 285 9.236006 GTATAGTACTCCCTCCGTTTCATAATA 57.764 37.037 0.00 0.00 0.00 0.98
270 286 7.949006 AGTATAGTACTCCCTCCGTTTCATAAT 59.051 37.037 0.00 0.00 32.47 1.28
271 287 7.293073 AGTATAGTACTCCCTCCGTTTCATAA 58.707 38.462 0.00 0.00 32.47 1.90
272 288 6.845908 AGTATAGTACTCCCTCCGTTTCATA 58.154 40.000 0.00 0.00 32.47 2.15
273 289 5.703310 AGTATAGTACTCCCTCCGTTTCAT 58.297 41.667 0.00 0.00 32.47 2.57
274 290 5.121380 AGTATAGTACTCCCTCCGTTTCA 57.879 43.478 0.00 0.00 32.47 2.69
275 291 7.094420 GGAATAGTATAGTACTCCCTCCGTTTC 60.094 44.444 0.00 0.00 40.14 2.78
276 292 6.718912 GGAATAGTATAGTACTCCCTCCGTTT 59.281 42.308 0.00 0.00 40.14 3.60
277 293 6.244654 GGAATAGTATAGTACTCCCTCCGTT 58.755 44.000 0.00 0.00 40.14 4.44
278 294 5.280934 GGGAATAGTATAGTACTCCCTCCGT 60.281 48.000 21.98 0.00 37.58 4.69
279 295 5.192176 GGGAATAGTATAGTACTCCCTCCG 58.808 50.000 21.98 0.00 37.58 4.63
280 296 5.045286 TCGGGAATAGTATAGTACTCCCTCC 60.045 48.000 24.90 10.83 38.12 4.30
281 297 5.879777 GTCGGGAATAGTATAGTACTCCCTC 59.120 48.000 24.90 16.59 38.12 4.30
282 298 5.570439 CGTCGGGAATAGTATAGTACTCCCT 60.570 48.000 24.90 0.00 38.12 4.20
283 299 4.633565 CGTCGGGAATAGTATAGTACTCCC 59.366 50.000 20.11 20.11 40.14 4.30
284 300 5.241662 ACGTCGGGAATAGTATAGTACTCC 58.758 45.833 6.54 6.54 40.14 3.85
285 301 5.061560 CGACGTCGGGAATAGTATAGTACTC 59.938 48.000 29.70 0.00 36.63 2.59
286 302 4.926238 CGACGTCGGGAATAGTATAGTACT 59.074 45.833 29.70 0.00 38.02 2.73
287 303 4.434857 GCGACGTCGGGAATAGTATAGTAC 60.435 50.000 36.13 12.17 40.23 2.73
288 304 3.679980 GCGACGTCGGGAATAGTATAGTA 59.320 47.826 36.13 0.00 40.23 1.82
289 305 2.481952 GCGACGTCGGGAATAGTATAGT 59.518 50.000 36.13 0.00 40.23 2.12
290 306 2.481568 TGCGACGTCGGGAATAGTATAG 59.518 50.000 36.13 6.97 40.23 1.31
291 307 2.493035 TGCGACGTCGGGAATAGTATA 58.507 47.619 36.13 0.00 40.23 1.47
292 308 1.311859 TGCGACGTCGGGAATAGTAT 58.688 50.000 36.13 0.00 40.23 2.12
293 309 1.093972 TTGCGACGTCGGGAATAGTA 58.906 50.000 36.13 5.56 40.23 1.82
294 310 0.244450 TTTGCGACGTCGGGAATAGT 59.756 50.000 36.13 0.00 40.23 2.12
295 311 1.352114 TTTTGCGACGTCGGGAATAG 58.648 50.000 36.13 9.97 40.23 1.73
304 320 0.039527 GCCTTGGATTTTTGCGACGT 60.040 50.000 0.00 0.00 0.00 4.34
307 323 1.583986 CGGCCTTGGATTTTTGCGA 59.416 52.632 0.00 0.00 0.00 5.10
309 325 0.389817 GACCGGCCTTGGATTTTTGC 60.390 55.000 0.00 0.00 0.00 3.68
409 434 2.584391 GGAGCCGGACCAACTCTGT 61.584 63.158 5.05 0.00 0.00 3.41
431 456 0.813821 GAGAAAATGTGGCTGGCTCC 59.186 55.000 2.00 0.00 0.00 4.70
438 463 3.569701 TCCAGAAACAGAGAAAATGTGGC 59.430 43.478 0.00 0.00 0.00 5.01
444 469 8.746052 TTCTGTATTTCCAGAAACAGAGAAAA 57.254 30.769 8.14 0.00 45.82 2.29
515 553 5.072741 TGGATATTATTTTCCTGCAGCTCC 58.927 41.667 8.66 1.85 32.95 4.70
520 558 4.218200 CGCCATGGATATTATTTTCCTGCA 59.782 41.667 18.40 0.00 32.95 4.41
589 627 2.335011 GAACACTTGGCAACGGGC 59.665 61.111 0.00 0.00 43.74 6.13
591 629 3.834726 TGGAACACTTGGCAACGG 58.165 55.556 0.00 0.00 42.51 4.44
617 655 3.409026 AACTACTTGGCACCAGAAGAG 57.591 47.619 0.00 0.00 0.00 2.85
623 661 0.111639 GGGGAAACTACTTGGCACCA 59.888 55.000 0.00 0.00 0.00 4.17
628 666 1.944430 GCTCGTGGGGAAACTACTTGG 60.944 57.143 0.00 0.00 0.00 3.61
669 710 2.271497 GACGACGAGGAGGAGGGA 59.729 66.667 0.00 0.00 0.00 4.20
706 754 0.615331 CATGGATGGAGGTATCCCCG 59.385 60.000 0.00 0.00 46.04 5.73
733 781 1.587613 GCTCGTCAGCTAGAAGCCG 60.588 63.158 0.00 0.00 43.77 5.52
751 799 1.750399 CAATCCGGAAGCCACCAGG 60.750 63.158 9.01 0.00 38.23 4.45
807 863 2.235761 AACTAATGGTGGGGGCGGT 61.236 57.895 0.00 0.00 0.00 5.68
808 864 1.752694 CAACTAATGGTGGGGGCGG 60.753 63.158 0.00 0.00 0.00 6.13
843 899 0.321475 AAGCAGAGCTGGACAAGAGC 60.321 55.000 0.00 0.00 39.62 4.09
844 900 2.181954 AAAGCAGAGCTGGACAAGAG 57.818 50.000 0.00 0.00 39.62 2.85
860 916 1.536709 GCAACCACTGGCTCACAAAAG 60.537 52.381 0.00 0.00 0.00 2.27
866 923 0.321919 GATCTGCAACCACTGGCTCA 60.322 55.000 0.00 0.00 0.00 4.26
872 929 2.093235 GGAGCTAAGATCTGCAACCACT 60.093 50.000 7.70 0.00 0.00 4.00
950 1015 1.603802 TCAAAAAGAGCAAGCGACCTG 59.396 47.619 0.00 0.00 0.00 4.00
959 1024 5.003160 TCCAGATTCGATTCAAAAAGAGCA 58.997 37.500 9.78 0.00 0.00 4.26
966 1031 4.141846 CCTCTCCTCCAGATTCGATTCAAA 60.142 45.833 9.78 0.00 0.00 2.69
983 1048 1.518367 TCTCCTCTCCTCTCCTCTCC 58.482 60.000 0.00 0.00 0.00 3.71
984 1049 3.395941 AGAATCTCCTCTCCTCTCCTCTC 59.604 52.174 0.00 0.00 0.00 3.20
985 1050 3.407209 AGAATCTCCTCTCCTCTCCTCT 58.593 50.000 0.00 0.00 0.00 3.69
986 1051 3.884037 AGAATCTCCTCTCCTCTCCTC 57.116 52.381 0.00 0.00 0.00 3.71
992 1057 3.113191 TCTGCAAGAATCTCCTCTCCT 57.887 47.619 0.00 0.00 42.31 3.69
1016 1081 4.663334 TGCTTCTCCTCTACACTACTGAA 58.337 43.478 0.00 0.00 0.00 3.02
1054 1119 3.604133 ATTGCTTGCCCCCACCCT 61.604 61.111 0.00 0.00 0.00 4.34
1747 1819 2.876219 GAGGTGACGTCGTCCTCC 59.124 66.667 31.81 21.68 41.09 4.30
1958 2039 0.694444 TACTCATCCCCCTCCTTGGC 60.694 60.000 0.00 0.00 0.00 4.52
1968 2049 1.208052 TGAAGCAGCAGTACTCATCCC 59.792 52.381 0.00 0.00 0.00 3.85
2095 2179 1.379044 CCAGGACATGTTCAGGCCC 60.379 63.158 6.96 0.00 0.00 5.80
2196 2280 2.479837 TGGTTCAGTTAACTGCAGACG 58.520 47.619 27.49 6.40 43.46 4.18
2200 2284 4.013728 ACTTGTTGGTTCAGTTAACTGCA 58.986 39.130 27.49 16.82 43.46 4.41
2204 2296 5.585047 AGACAGACTTGTTGGTTCAGTTAAC 59.415 40.000 0.00 0.00 37.76 2.01
2217 2309 7.108841 TCAGTTAAACTGTAGACAGACTTGT 57.891 36.000 16.44 0.00 46.03 3.16
2220 2312 6.097839 TGGTTCAGTTAAACTGTAGACAGACT 59.902 38.462 16.44 6.33 46.03 3.24
2304 2431 7.661968 TCGACCAAACCATTTGAATTATTTCA 58.338 30.769 2.86 0.00 43.26 2.69
2305 2432 8.527567 TTCGACCAAACCATTTGAATTATTTC 57.472 30.769 2.86 0.00 43.26 2.17
2306 2433 9.500785 AATTCGACCAAACCATTTGAATTATTT 57.499 25.926 2.86 0.00 43.26 1.40
2307 2434 9.500785 AAATTCGACCAAACCATTTGAATTATT 57.499 25.926 2.86 0.00 43.26 1.40
2309 2436 9.982651 TTAAATTCGACCAAACCATTTGAATTA 57.017 25.926 2.86 0.00 43.26 1.40
2310 2437 8.769891 GTTAAATTCGACCAAACCATTTGAATT 58.230 29.630 2.86 0.00 43.26 2.17
2311 2438 7.928706 TGTTAAATTCGACCAAACCATTTGAAT 59.071 29.630 2.86 0.00 43.26 2.57
2312 2439 7.222999 GTGTTAAATTCGACCAAACCATTTGAA 59.777 33.333 2.86 0.00 43.26 2.69
2313 2440 6.697892 GTGTTAAATTCGACCAAACCATTTGA 59.302 34.615 2.86 0.00 43.26 2.69
2314 2441 6.074034 GGTGTTAAATTCGACCAAACCATTTG 60.074 38.462 0.00 0.00 40.32 2.32
2315 2442 5.986741 GGTGTTAAATTCGACCAAACCATTT 59.013 36.000 0.00 0.00 0.00 2.32
2316 2443 5.303333 AGGTGTTAAATTCGACCAAACCATT 59.697 36.000 0.00 0.00 0.00 3.16
2317 2444 4.830600 AGGTGTTAAATTCGACCAAACCAT 59.169 37.500 0.00 0.00 0.00 3.55
2318 2445 4.036971 CAGGTGTTAAATTCGACCAAACCA 59.963 41.667 0.00 0.00 0.00 3.67
2319 2446 4.037089 ACAGGTGTTAAATTCGACCAAACC 59.963 41.667 0.00 0.00 0.00 3.27
2320 2447 5.177725 ACAGGTGTTAAATTCGACCAAAC 57.822 39.130 0.00 0.00 0.00 2.93
2321 2448 5.838531 AACAGGTGTTAAATTCGACCAAA 57.161 34.783 0.00 0.00 36.32 3.28
2322 2449 5.838531 AAACAGGTGTTAAATTCGACCAA 57.161 34.783 0.00 0.00 37.25 3.67
2323 2450 7.660617 TGTATAAACAGGTGTTAAATTCGACCA 59.339 33.333 0.00 0.00 37.25 4.02
2324 2451 8.031848 TGTATAAACAGGTGTTAAATTCGACC 57.968 34.615 0.00 0.00 37.25 4.79
2325 2452 9.881529 TTTGTATAAACAGGTGTTAAATTCGAC 57.118 29.630 0.00 0.00 37.25 4.20
2347 2474 9.653287 TCAATCTCGAACAGTAATCTATTTTGT 57.347 29.630 0.00 0.00 0.00 2.83
2351 2478 9.823647 ACAATCAATCTCGAACAGTAATCTATT 57.176 29.630 0.00 0.00 0.00 1.73
2352 2479 9.823647 AACAATCAATCTCGAACAGTAATCTAT 57.176 29.630 0.00 0.00 0.00 1.98
2353 2480 9.302345 GAACAATCAATCTCGAACAGTAATCTA 57.698 33.333 0.00 0.00 0.00 1.98
2354 2481 7.819415 TGAACAATCAATCTCGAACAGTAATCT 59.181 33.333 0.00 0.00 30.99 2.40
2355 2482 7.900352 GTGAACAATCAATCTCGAACAGTAATC 59.100 37.037 0.00 0.00 37.30 1.75
2356 2483 7.387673 TGTGAACAATCAATCTCGAACAGTAAT 59.612 33.333 0.00 0.00 37.30 1.89
2357 2484 6.704050 TGTGAACAATCAATCTCGAACAGTAA 59.296 34.615 0.00 0.00 37.30 2.24
2358 2485 6.220201 TGTGAACAATCAATCTCGAACAGTA 58.780 36.000 0.00 0.00 37.30 2.74
2359 2486 5.056480 TGTGAACAATCAATCTCGAACAGT 58.944 37.500 0.00 0.00 37.30 3.55
2360 2487 5.596268 TGTGAACAATCAATCTCGAACAG 57.404 39.130 0.00 0.00 37.30 3.16
2361 2488 4.083855 GCTGTGAACAATCAATCTCGAACA 60.084 41.667 0.00 0.00 37.30 3.18
2362 2489 4.083855 TGCTGTGAACAATCAATCTCGAAC 60.084 41.667 0.00 0.00 37.30 3.95
2363 2490 4.064388 TGCTGTGAACAATCAATCTCGAA 58.936 39.130 0.00 0.00 37.30 3.71
2364 2491 3.663025 TGCTGTGAACAATCAATCTCGA 58.337 40.909 0.00 0.00 37.30 4.04
2365 2492 4.408993 TTGCTGTGAACAATCAATCTCG 57.591 40.909 0.00 0.00 37.30 4.04
2366 2493 5.766222 AGTTTGCTGTGAACAATCAATCTC 58.234 37.500 0.00 0.00 37.30 2.75
2367 2494 5.779529 AGTTTGCTGTGAACAATCAATCT 57.220 34.783 0.00 2.59 37.30 2.40
2368 2495 6.211515 AGAAGTTTGCTGTGAACAATCAATC 58.788 36.000 0.00 0.86 37.30 2.67
2369 2496 6.152932 AGAAGTTTGCTGTGAACAATCAAT 57.847 33.333 0.00 0.00 37.30 2.57
2370 2497 5.581126 AGAAGTTTGCTGTGAACAATCAA 57.419 34.783 0.00 0.00 37.30 2.57
2371 2498 5.588246 TGTAGAAGTTTGCTGTGAACAATCA 59.412 36.000 0.00 0.00 0.00 2.57
2372 2499 6.060028 TGTAGAAGTTTGCTGTGAACAATC 57.940 37.500 0.00 0.00 0.00 2.67
2373 2500 5.590259 ACTGTAGAAGTTTGCTGTGAACAAT 59.410 36.000 0.00 0.00 34.57 2.71
2374 2501 4.941263 ACTGTAGAAGTTTGCTGTGAACAA 59.059 37.500 0.00 0.00 34.57 2.83
2375 2502 4.513442 ACTGTAGAAGTTTGCTGTGAACA 58.487 39.130 0.00 0.00 34.57 3.18
2376 2503 4.570772 TGACTGTAGAAGTTTGCTGTGAAC 59.429 41.667 0.00 0.00 40.07 3.18
2377 2504 4.570772 GTGACTGTAGAAGTTTGCTGTGAA 59.429 41.667 0.00 0.00 40.07 3.18
2378 2505 4.119862 GTGACTGTAGAAGTTTGCTGTGA 58.880 43.478 0.00 0.00 40.07 3.58
2379 2506 3.248602 GGTGACTGTAGAAGTTTGCTGTG 59.751 47.826 0.00 0.00 40.07 3.66
2380 2507 3.467803 GGTGACTGTAGAAGTTTGCTGT 58.532 45.455 0.00 0.00 40.07 4.40
2381 2508 2.476619 CGGTGACTGTAGAAGTTTGCTG 59.523 50.000 0.00 0.00 40.07 4.41
2382 2509 2.102588 ACGGTGACTGTAGAAGTTTGCT 59.897 45.455 0.00 0.00 40.07 3.91
2383 2510 2.221055 CACGGTGACTGTAGAAGTTTGC 59.779 50.000 0.74 0.00 40.07 3.68
2384 2511 3.713288 TCACGGTGACTGTAGAAGTTTG 58.287 45.455 6.76 0.00 40.07 2.93
2385 2512 4.117685 GTTCACGGTGACTGTAGAAGTTT 58.882 43.478 10.97 0.00 40.07 2.66
2386 2513 3.492137 GGTTCACGGTGACTGTAGAAGTT 60.492 47.826 10.97 0.00 40.07 2.66
2387 2514 2.035576 GGTTCACGGTGACTGTAGAAGT 59.964 50.000 10.97 0.00 43.85 3.01
2388 2515 2.035449 TGGTTCACGGTGACTGTAGAAG 59.965 50.000 10.97 0.00 0.00 2.85
2389 2516 2.033372 TGGTTCACGGTGACTGTAGAA 58.967 47.619 10.97 1.18 0.00 2.10
2390 2517 1.694844 TGGTTCACGGTGACTGTAGA 58.305 50.000 10.97 0.00 0.00 2.59
2391 2518 2.132762 GTTGGTTCACGGTGACTGTAG 58.867 52.381 10.97 0.00 0.00 2.74
2392 2519 1.481363 TGTTGGTTCACGGTGACTGTA 59.519 47.619 10.97 0.00 0.00 2.74
2393 2520 0.250793 TGTTGGTTCACGGTGACTGT 59.749 50.000 10.97 0.00 0.00 3.55
2394 2521 0.937304 CTGTTGGTTCACGGTGACTG 59.063 55.000 10.97 0.07 0.00 3.51
2395 2522 0.179056 CCTGTTGGTTCACGGTGACT 60.179 55.000 10.97 0.00 0.00 3.41
2396 2523 0.463116 ACCTGTTGGTTCACGGTGAC 60.463 55.000 10.97 6.28 46.05 3.67
2397 2524 0.462937 CACCTGTTGGTTCACGGTGA 60.463 55.000 6.76 6.76 46.05 4.02
2398 2525 0.746563 ACACCTGTTGGTTCACGGTG 60.747 55.000 0.56 0.56 46.05 4.94
2399 2526 0.463116 GACACCTGTTGGTTCACGGT 60.463 55.000 0.00 0.00 46.05 4.83
2400 2527 0.179056 AGACACCTGTTGGTTCACGG 60.179 55.000 0.00 0.00 46.05 4.94
2401 2528 0.937304 CAGACACCTGTTGGTTCACG 59.063 55.000 0.00 0.00 46.05 4.35
2411 2538 0.955178 AGACGACTGACAGACACCTG 59.045 55.000 10.08 0.00 45.76 4.00
2412 2539 0.955178 CAGACGACTGACAGACACCT 59.045 55.000 10.08 0.00 46.03 4.00
2413 2540 0.669077 ACAGACGACTGACAGACACC 59.331 55.000 21.50 0.00 46.03 4.16
2414 2541 1.065701 ACACAGACGACTGACAGACAC 59.934 52.381 21.50 0.44 46.03 3.67
2415 2542 1.389555 ACACAGACGACTGACAGACA 58.610 50.000 21.50 0.00 46.03 3.41
2416 2543 2.289820 TGTACACAGACGACTGACAGAC 59.710 50.000 21.50 12.75 46.03 3.51
2417 2544 2.548480 CTGTACACAGACGACTGACAGA 59.452 50.000 21.88 6.95 46.59 3.41
2418 2545 2.290916 ACTGTACACAGACGACTGACAG 59.709 50.000 23.50 23.50 46.59 3.51
2419 2546 2.294979 ACTGTACACAGACGACTGACA 58.705 47.619 21.50 13.58 46.59 3.58
2420 2547 3.351020 AACTGTACACAGACGACTGAC 57.649 47.619 21.50 9.74 46.59 3.51
2421 2548 5.066893 AGTTTAACTGTACACAGACGACTGA 59.933 40.000 21.50 0.00 46.59 3.41
2422 2549 5.173312 CAGTTTAACTGTACACAGACGACTG 59.827 44.000 16.22 13.39 46.59 3.51
2423 2550 5.066893 TCAGTTTAACTGTACACAGACGACT 59.933 40.000 22.36 10.34 46.03 4.18
2424 2551 5.276270 TCAGTTTAACTGTACACAGACGAC 58.724 41.667 22.36 8.54 46.03 4.34
2425 2552 5.503662 TCAGTTTAACTGTACACAGACGA 57.496 39.130 22.36 0.00 46.03 4.20
2426 2553 5.747197 AGTTCAGTTTAACTGTACACAGACG 59.253 40.000 27.67 2.36 45.32 4.18
2427 2554 8.538039 GTTAGTTCAGTTTAACTGTACACAGAC 58.462 37.037 27.67 18.55 45.32 3.51
2428 2555 8.252417 TGTTAGTTCAGTTTAACTGTACACAGA 58.748 33.333 27.67 14.64 45.32 3.41
2429 2556 8.415192 TGTTAGTTCAGTTTAACTGTACACAG 57.585 34.615 27.67 7.82 45.32 3.66
2430 2557 8.774890 TTGTTAGTTCAGTTTAACTGTACACA 57.225 30.769 27.67 22.29 45.32 3.72
2431 2558 9.698617 CTTTGTTAGTTCAGTTTAACTGTACAC 57.301 33.333 27.67 20.60 45.32 2.90
2432 2559 9.439500 ACTTTGTTAGTTCAGTTTAACTGTACA 57.561 29.630 27.67 19.19 45.32 2.90
2433 2560 9.911980 GACTTTGTTAGTTCAGTTTAACTGTAC 57.088 33.333 21.72 21.72 43.89 2.90
2434 2561 9.880157 AGACTTTGTTAGTTCAGTTTAACTGTA 57.120 29.630 22.36 12.21 41.24 2.74
2435 2562 8.665685 CAGACTTTGTTAGTTCAGTTTAACTGT 58.334 33.333 22.36 8.24 41.24 3.55
2436 2563 7.640240 GCAGACTTTGTTAGTTCAGTTTAACTG 59.360 37.037 18.12 18.12 41.57 3.16
2437 2564 7.335924 TGCAGACTTTGTTAGTTCAGTTTAACT 59.664 33.333 0.00 0.00 42.31 2.24
2438 2565 7.469260 TGCAGACTTTGTTAGTTCAGTTTAAC 58.531 34.615 0.00 0.00 37.17 2.01
2439 2566 7.618502 TGCAGACTTTGTTAGTTCAGTTTAA 57.381 32.000 0.00 0.00 37.17 1.52
2440 2567 7.551262 TCTTGCAGACTTTGTTAGTTCAGTTTA 59.449 33.333 0.00 0.00 37.17 2.01
2441 2568 6.374333 TCTTGCAGACTTTGTTAGTTCAGTTT 59.626 34.615 0.00 0.00 37.17 2.66
2442 2569 5.880332 TCTTGCAGACTTTGTTAGTTCAGTT 59.120 36.000 0.00 0.00 37.17 3.16
2443 2570 5.428253 TCTTGCAGACTTTGTTAGTTCAGT 58.572 37.500 0.00 0.00 37.17 3.41
2444 2571 5.991328 TCTTGCAGACTTTGTTAGTTCAG 57.009 39.130 0.00 0.00 37.17 3.02
2445 2572 6.054941 TCATCTTGCAGACTTTGTTAGTTCA 58.945 36.000 0.00 0.00 37.17 3.18
2446 2573 6.545504 TCATCTTGCAGACTTTGTTAGTTC 57.454 37.500 0.00 0.00 37.17 3.01
2447 2574 6.942532 TTCATCTTGCAGACTTTGTTAGTT 57.057 33.333 0.00 0.00 37.17 2.24
2448 2575 7.516198 AATTCATCTTGCAGACTTTGTTAGT 57.484 32.000 0.00 0.00 40.71 2.24
2449 2576 9.334693 GTAAATTCATCTTGCAGACTTTGTTAG 57.665 33.333 0.00 0.00 0.00 2.34
2450 2577 8.296713 GGTAAATTCATCTTGCAGACTTTGTTA 58.703 33.333 0.00 0.00 0.00 2.41
2451 2578 7.147976 GGTAAATTCATCTTGCAGACTTTGTT 58.852 34.615 0.00 0.00 0.00 2.83
2452 2579 6.265196 TGGTAAATTCATCTTGCAGACTTTGT 59.735 34.615 0.00 0.00 0.00 2.83
2453 2580 6.680810 TGGTAAATTCATCTTGCAGACTTTG 58.319 36.000 0.00 0.00 0.00 2.77
2454 2581 6.899393 TGGTAAATTCATCTTGCAGACTTT 57.101 33.333 0.00 0.00 0.00 2.66
2455 2582 6.899393 TTGGTAAATTCATCTTGCAGACTT 57.101 33.333 0.00 0.00 0.00 3.01
2456 2583 7.472334 AATTGGTAAATTCATCTTGCAGACT 57.528 32.000 0.00 0.00 29.70 3.24
2469 2596 9.804977 TTCATTCAAAATGGGAATTGGTAAATT 57.195 25.926 0.19 0.00 38.74 1.82
2470 2597 9.804977 TTTCATTCAAAATGGGAATTGGTAAAT 57.195 25.926 0.19 0.00 32.86 1.40
2471 2598 9.632638 TTTTCATTCAAAATGGGAATTGGTAAA 57.367 25.926 0.19 0.00 32.86 2.01
2472 2599 9.804977 ATTTTCATTCAAAATGGGAATTGGTAA 57.195 25.926 0.19 0.00 42.20 2.85
2473 2600 9.804977 AATTTTCATTCAAAATGGGAATTGGTA 57.195 25.926 10.52 0.00 42.86 3.25
2474 2601 8.709272 AATTTTCATTCAAAATGGGAATTGGT 57.291 26.923 10.52 0.00 42.86 3.67
2475 2602 9.984190 AAAATTTTCATTCAAAATGGGAATTGG 57.016 25.926 0.00 0.00 42.86 3.16
2527 2660 5.120399 ACAGGTGTAAAACTCGATCAAACA 58.880 37.500 0.00 0.00 0.00 2.83
2538 2671 4.705337 TTGGTGTGAACAGGTGTAAAAC 57.295 40.909 0.00 0.00 0.00 2.43
2570 2703 6.677781 TTAGTTTCAGAAAGAACACACTGG 57.322 37.500 0.00 0.00 35.56 4.00
2575 2743 8.234546 TGTGAGTTTTAGTTTCAGAAAGAACAC 58.765 33.333 0.00 0.00 35.56 3.32
2613 2786 2.764010 ACGATTGGGATGCACAGTAGTA 59.236 45.455 0.00 0.00 0.00 1.82
2622 2795 0.527565 AGCAACAACGATTGGGATGC 59.472 50.000 0.00 3.72 38.38 3.91
2630 2803 2.548057 CACCACAGTAAGCAACAACGAT 59.452 45.455 0.00 0.00 0.00 3.73
2717 2890 1.541588 GTCTTGTTGAAGCCATCCACC 59.458 52.381 0.00 0.00 0.00 4.61
2855 3028 2.169330 GAGAGGAACTAACCAGTCGGT 58.831 52.381 0.00 0.00 46.06 4.69
2861 3034 0.797579 AGGGGGAGAGGAACTAACCA 59.202 55.000 0.00 0.00 41.55 3.67
2886 3059 2.225019 GGAGCATGTATTCCGCAATGAG 59.775 50.000 0.00 0.00 0.00 2.90
2888 3061 1.948834 TGGAGCATGTATTCCGCAATG 59.051 47.619 0.00 0.00 36.22 2.82
2889 3062 2.346766 TGGAGCATGTATTCCGCAAT 57.653 45.000 0.00 0.00 36.22 3.56
2894 3067 6.882610 TGTGATAAATGGAGCATGTATTCC 57.117 37.500 0.00 0.25 25.70 3.01
2967 3158 6.472016 TGATTAGTCACAGTTTGGAAGCATA 58.528 36.000 0.00 0.00 0.00 3.14
2983 3174 4.748892 TGCTTACTGCTGTCTGATTAGTC 58.251 43.478 0.00 0.00 43.37 2.59
2985 3176 4.118410 CCTGCTTACTGCTGTCTGATTAG 58.882 47.826 0.00 0.00 43.37 1.73
3003 3198 0.318120 CCATTGTTTGGTGACCCTGC 59.682 55.000 0.00 0.00 40.99 4.85
3044 3239 5.401550 ACACATTCAGAAATTATTGCACGG 58.598 37.500 0.00 0.00 0.00 4.94
3045 3240 6.932901 AACACATTCAGAAATTATTGCACG 57.067 33.333 0.00 0.00 0.00 5.34
3074 3272 1.219393 GACCTCACAGCCTGGCTAC 59.781 63.158 22.90 3.53 36.40 3.58
3082 3280 0.398318 AGAAGTTGGGACCTCACAGC 59.602 55.000 0.00 0.00 0.00 4.40
3087 3285 4.261825 CGATCTGATAGAAGTTGGGACCTC 60.262 50.000 0.00 0.00 0.00 3.85
3173 3374 5.677598 GCAGAGTCTGTCAGTAGTATGTTCC 60.678 48.000 21.06 0.00 33.43 3.62
3174 3375 5.106118 TGCAGAGTCTGTCAGTAGTATGTTC 60.106 44.000 21.06 0.32 33.43 3.18
3202 3412 2.348362 GGACTGCAACAAAGCACAAAAC 59.652 45.455 0.00 0.00 40.11 2.43
3496 3706 3.329520 TGGTGTTGGTAACCATAAGCTCT 59.670 43.478 0.00 0.00 42.82 4.09
3497 3707 3.681593 TGGTGTTGGTAACCATAAGCTC 58.318 45.455 0.00 0.00 42.82 4.09
3506 3718 2.164624 TGTTGCTGTTGGTGTTGGTAAC 59.835 45.455 0.00 0.00 0.00 2.50
3510 3722 1.102154 TCTGTTGCTGTTGGTGTTGG 58.898 50.000 0.00 0.00 0.00 3.77
3516 3728 5.645067 TCATATCTTCTTCTGTTGCTGTTGG 59.355 40.000 0.00 0.00 0.00 3.77
3622 3839 1.246737 CCTCCCAGCTTCTTTGTGGC 61.247 60.000 0.00 0.00 0.00 5.01
3626 3843 1.680314 GGGCCTCCCAGCTTCTTTG 60.680 63.158 0.84 0.00 44.65 2.77
3799 4041 4.634004 TGTACCATCCAATTCATCGTCAAC 59.366 41.667 0.00 0.00 0.00 3.18
3802 4044 4.188462 TGTGTACCATCCAATTCATCGTC 58.812 43.478 0.00 0.00 0.00 4.20
3943 4187 0.107508 AGCATGGTGAAGATGGACCG 60.108 55.000 0.00 0.00 34.69 4.79
3970 4425 2.265367 TGGTGATCTGGCTTGTAAGGA 58.735 47.619 0.00 0.00 0.00 3.36
3972 4427 2.749621 GGTTGGTGATCTGGCTTGTAAG 59.250 50.000 0.00 0.00 0.00 2.34
3974 4429 1.985159 AGGTTGGTGATCTGGCTTGTA 59.015 47.619 0.00 0.00 0.00 2.41
3975 4430 0.773644 AGGTTGGTGATCTGGCTTGT 59.226 50.000 0.00 0.00 0.00 3.16
3976 4431 1.915141 AAGGTTGGTGATCTGGCTTG 58.085 50.000 0.00 0.00 0.00 4.01
3977 4432 4.322057 AATAAGGTTGGTGATCTGGCTT 57.678 40.909 0.00 0.00 0.00 4.35
4030 4514 4.982916 GCGACTAAACTACCATACCATCAG 59.017 45.833 0.00 0.00 0.00 2.90
4092 4576 1.138883 GCTCGTGGCGTCTATGTCA 59.861 57.895 0.00 0.00 0.00 3.58
4164 5351 7.921214 TCATACAGCAAACTAGCATCTACTTAC 59.079 37.037 0.00 0.00 36.85 2.34
4167 5354 6.471233 TCATACAGCAAACTAGCATCTACT 57.529 37.500 0.00 0.00 36.85 2.57
4170 5357 8.915057 AAATATCATACAGCAAACTAGCATCT 57.085 30.769 0.00 0.00 36.85 2.90
4171 5358 9.390795 CAAAATATCATACAGCAAACTAGCATC 57.609 33.333 0.00 0.00 36.85 3.91
4173 5360 7.339212 ACCAAAATATCATACAGCAAACTAGCA 59.661 33.333 0.00 0.00 36.85 3.49
4174 5361 7.645340 CACCAAAATATCATACAGCAAACTAGC 59.355 37.037 0.00 0.00 0.00 3.42
4175 5362 8.677300 ACACCAAAATATCATACAGCAAACTAG 58.323 33.333 0.00 0.00 0.00 2.57
4176 5363 8.574251 ACACCAAAATATCATACAGCAAACTA 57.426 30.769 0.00 0.00 0.00 2.24
4177 5364 7.466746 ACACCAAAATATCATACAGCAAACT 57.533 32.000 0.00 0.00 0.00 2.66
4178 5365 9.236691 CATACACCAAAATATCATACAGCAAAC 57.763 33.333 0.00 0.00 0.00 2.93
4179 5366 9.183368 TCATACACCAAAATATCATACAGCAAA 57.817 29.630 0.00 0.00 0.00 3.68
4180 5367 8.744568 TCATACACCAAAATATCATACAGCAA 57.255 30.769 0.00 0.00 0.00 3.91
4181 5368 8.922931 ATCATACACCAAAATATCATACAGCA 57.077 30.769 0.00 0.00 0.00 4.41
4230 6525 2.027745 TGAAATCGAAGAGGCAAGCTCT 60.028 45.455 0.00 0.00 43.63 4.09
4231 6526 2.350522 TGAAATCGAAGAGGCAAGCTC 58.649 47.619 0.00 0.00 43.63 4.09
4232 6527 2.479566 TGAAATCGAAGAGGCAAGCT 57.520 45.000 0.00 0.00 43.63 3.74
4233 6528 3.772060 AATGAAATCGAAGAGGCAAGC 57.228 42.857 0.00 0.00 43.63 4.01
4234 6529 7.530010 TCTTTAAATGAAATCGAAGAGGCAAG 58.470 34.615 0.00 0.00 43.63 4.01
4235 6530 7.447374 TCTTTAAATGAAATCGAAGAGGCAA 57.553 32.000 0.00 0.00 43.63 4.52
4236 6531 7.447374 TTCTTTAAATGAAATCGAAGAGGCA 57.553 32.000 0.00 0.00 43.63 4.75
4237 6532 8.917415 ATTTCTTTAAATGAAATCGAAGAGGC 57.083 30.769 14.60 0.00 39.15 4.70
4252 6547 9.868277 ACAGTGTGAACATTTGATTTCTTTAAA 57.132 25.926 0.00 0.00 0.00 1.52
4256 6551 8.849168 TCATACAGTGTGAACATTTGATTTCTT 58.151 29.630 5.88 0.00 0.00 2.52
4257 6552 8.394971 TCATACAGTGTGAACATTTGATTTCT 57.605 30.769 5.88 0.00 0.00 2.52
4345 6643 2.125753 GTGACCAGCAGAGCTCGG 60.126 66.667 9.76 9.76 36.40 4.63
4350 6648 3.446873 ACATAGAGAAGTGACCAGCAGAG 59.553 47.826 0.00 0.00 0.00 3.35
4382 6680 6.323210 GGGGTCTATCCTCCTTTTCTAAAA 57.677 41.667 0.00 0.00 36.25 1.52
4383 6681 5.970501 GGGGTCTATCCTCCTTTTCTAAA 57.029 43.478 0.00 0.00 36.25 1.85
4398 6842 2.449730 AGATATGAAGGTCGGGGGTCTA 59.550 50.000 0.00 0.00 0.00 2.59
4399 6843 1.220750 AGATATGAAGGTCGGGGGTCT 59.779 52.381 0.00 0.00 0.00 3.85
4400 6844 1.344763 CAGATATGAAGGTCGGGGGTC 59.655 57.143 0.00 0.00 0.00 4.46
4401 6845 1.062428 TCAGATATGAAGGTCGGGGGT 60.062 52.381 0.00 0.00 0.00 4.95
4402 6846 1.717032 TCAGATATGAAGGTCGGGGG 58.283 55.000 0.00 0.00 0.00 5.40
4403 6847 3.557898 CCATTCAGATATGAAGGTCGGGG 60.558 52.174 13.11 2.60 0.00 5.73
4404 6848 3.071602 ACCATTCAGATATGAAGGTCGGG 59.928 47.826 13.11 9.18 29.65 5.14
4405 6849 4.060900 CACCATTCAGATATGAAGGTCGG 58.939 47.826 16.45 12.47 31.67 4.79
4406 6850 3.496130 GCACCATTCAGATATGAAGGTCG 59.504 47.826 16.45 13.81 31.67 4.79
4407 6851 4.454678 TGCACCATTCAGATATGAAGGTC 58.545 43.478 16.45 13.07 31.67 3.85
4408 6852 4.508551 TGCACCATTCAGATATGAAGGT 57.491 40.909 13.11 13.95 33.10 3.50
4409 6853 4.321008 GCATGCACCATTCAGATATGAAGG 60.321 45.833 14.21 8.33 0.00 3.46
4410 6854 4.277423 TGCATGCACCATTCAGATATGAAG 59.723 41.667 18.46 0.00 0.00 3.02
4411 6855 4.208746 TGCATGCACCATTCAGATATGAA 58.791 39.130 18.46 5.04 0.00 2.57
4412 6856 3.822940 TGCATGCACCATTCAGATATGA 58.177 40.909 18.46 0.00 0.00 2.15
4413 6857 4.577834 TTGCATGCACCATTCAGATATG 57.422 40.909 22.58 0.00 0.00 1.78
4415 6859 4.208746 TGATTGCATGCACCATTCAGATA 58.791 39.130 22.58 1.08 0.00 1.98
4418 6862 2.951457 TGATTGCATGCACCATTCAG 57.049 45.000 22.58 0.00 0.00 3.02
4420 6864 3.728076 AGATGATTGCATGCACCATTC 57.272 42.857 26.23 18.73 34.11 2.67
4421 6865 5.801531 ATAAGATGATTGCATGCACCATT 57.198 34.783 26.23 18.38 34.11 3.16
4458 6902 9.938280 TGATGTACTGTATTACTTTATATGGCC 57.062 33.333 0.00 0.00 0.00 5.36
4467 6911 5.129485 AGGCTGCTGATGTACTGTATTACTT 59.871 40.000 0.00 0.00 0.00 2.24
4468 6912 4.651503 AGGCTGCTGATGTACTGTATTACT 59.348 41.667 0.00 0.00 0.00 2.24
4469 6913 4.747108 CAGGCTGCTGATGTACTGTATTAC 59.253 45.833 0.00 0.00 0.00 1.89
4470 6914 4.649218 TCAGGCTGCTGATGTACTGTATTA 59.351 41.667 10.34 0.00 0.00 0.98
4471 6915 3.452264 TCAGGCTGCTGATGTACTGTATT 59.548 43.478 10.34 0.00 0.00 1.89
4472 6916 3.033909 TCAGGCTGCTGATGTACTGTAT 58.966 45.455 10.34 0.00 0.00 2.29
4473 6917 2.456577 TCAGGCTGCTGATGTACTGTA 58.543 47.619 10.34 0.00 0.00 2.74
4474 6918 1.269958 TCAGGCTGCTGATGTACTGT 58.730 50.000 10.34 0.00 0.00 3.55
4475 6919 2.391616 TTCAGGCTGCTGATGTACTG 57.608 50.000 10.34 0.00 32.91 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.