Multiple sequence alignment - TraesCS6A01G400700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G400700 chr6A 100.000 2891 0 0 1 2891 609719847 609716957 0.000000e+00 5339.0
1 TraesCS6A01G400700 chr6A 81.636 599 100 7 1291 1884 609815029 609814436 3.350000e-134 488.0
2 TraesCS6A01G400700 chr3A 96.746 1014 23 5 1882 2891 681331598 681332605 0.000000e+00 1681.0
3 TraesCS6A01G400700 chr3A 96.640 1012 24 3 1884 2891 41637044 41636039 0.000000e+00 1672.0
4 TraesCS6A01G400700 chr3A 96.436 1010 28 4 1886 2891 689046158 689047163 0.000000e+00 1659.0
5 TraesCS6A01G400700 chr4A 96.542 1012 25 3 1884 2891 240819157 240820162 0.000000e+00 1666.0
6 TraesCS6A01G400700 chr4A 96.453 1015 27 5 1881 2891 602816433 602815424 0.000000e+00 1666.0
7 TraesCS6A01G400700 chr4A 96.256 1015 28 4 1881 2891 413944399 413945407 0.000000e+00 1655.0
8 TraesCS6A01G400700 chr7A 96.535 1010 28 3 1886 2891 712908818 712909824 0.000000e+00 1664.0
9 TraesCS6A01G400700 chr1A 96.450 1014 27 3 1882 2891 29725516 29724508 0.000000e+00 1664.0
10 TraesCS6A01G400700 chr2A 96.337 1010 32 3 1886 2891 770663791 770664799 0.000000e+00 1655.0
11 TraesCS6A01G400700 chr6B 82.235 698 88 15 1216 1884 705581141 705580451 1.160000e-158 569.0
12 TraesCS6A01G400700 chr6B 80.745 779 102 20 1135 1884 705629512 705628753 5.410000e-157 564.0
13 TraesCS6A01G400700 chr6B 80.616 779 109 17 1135 1884 706132609 706131844 5.410000e-157 564.0
14 TraesCS6A01G400700 chr6B 81.414 608 104 8 1292 1897 706528834 706528234 3.350000e-134 488.0
15 TraesCS6A01G400700 chr6B 82.878 549 87 6 1338 1884 705758062 705757519 1.200000e-133 486.0
16 TraesCS6A01G400700 chr6B 81.167 600 103 7 1290 1884 706097888 706097294 9.380000e-130 473.0
17 TraesCS6A01G400700 chr6B 82.739 533 84 6 1338 1868 706352158 706351632 4.360000e-128 468.0
18 TraesCS6A01G400700 chr6B 82.552 533 86 5 1338 1868 706409144 706408617 2.030000e-126 462.0
19 TraesCS6A01G400700 chr6B 80.667 600 106 8 1290 1884 706443794 706443200 9.440000e-125 457.0
20 TraesCS6A01G400700 chr6B 82.997 347 28 13 782 1098 705581545 705581200 4.710000e-73 285.0
21 TraesCS6A01G400700 chr6B 85.821 268 26 7 792 1049 705796880 705796615 1.020000e-69 274.0
22 TraesCS6A01G400700 chr6B 84.151 265 30 7 795 1049 705629901 705629639 2.220000e-61 246.0
23 TraesCS6A01G400700 chr6B 83.404 235 24 7 819 1039 705927803 705927570 1.360000e-48 204.0
24 TraesCS6A01G400700 chr6B 88.961 154 15 2 1732 1884 705906936 705906784 3.800000e-44 189.0
25 TraesCS6A01G400700 chr6B 92.079 101 7 1 405 504 705801208 705801108 1.080000e-29 141.0
26 TraesCS6A01G400700 chr6D 81.407 597 102 7 1291 1884 463079804 463079214 2.020000e-131 479.0
27 TraesCS6A01G400700 chr6D 82.332 549 90 5 1338 1884 463073494 463072951 1.210000e-128 470.0
28 TraesCS6A01G400700 chr6D 91.584 202 16 1 84 284 462881865 462881664 7.890000e-71 278.0
29 TraesCS6A01G400700 chr6D 77.848 316 49 14 382 684 462881499 462881192 2.960000e-40 176.0
30 TraesCS6A01G400700 chr6D 85.976 164 10 8 1139 1296 462880757 462880601 2.300000e-36 163.0
31 TraesCS6A01G400700 chr6D 100.000 29 0 0 657 685 291883355 291883383 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G400700 chr6A 609716957 609719847 2890 True 5339.000000 5339 100.000 1 2891 1 chr6A.!!$R1 2890
1 TraesCS6A01G400700 chr6A 609814436 609815029 593 True 488.000000 488 81.636 1291 1884 1 chr6A.!!$R2 593
2 TraesCS6A01G400700 chr3A 681331598 681332605 1007 False 1681.000000 1681 96.746 1882 2891 1 chr3A.!!$F1 1009
3 TraesCS6A01G400700 chr3A 41636039 41637044 1005 True 1672.000000 1672 96.640 1884 2891 1 chr3A.!!$R1 1007
4 TraesCS6A01G400700 chr3A 689046158 689047163 1005 False 1659.000000 1659 96.436 1886 2891 1 chr3A.!!$F2 1005
5 TraesCS6A01G400700 chr4A 240819157 240820162 1005 False 1666.000000 1666 96.542 1884 2891 1 chr4A.!!$F1 1007
6 TraesCS6A01G400700 chr4A 602815424 602816433 1009 True 1666.000000 1666 96.453 1881 2891 1 chr4A.!!$R1 1010
7 TraesCS6A01G400700 chr4A 413944399 413945407 1008 False 1655.000000 1655 96.256 1881 2891 1 chr4A.!!$F2 1010
8 TraesCS6A01G400700 chr7A 712908818 712909824 1006 False 1664.000000 1664 96.535 1886 2891 1 chr7A.!!$F1 1005
9 TraesCS6A01G400700 chr1A 29724508 29725516 1008 True 1664.000000 1664 96.450 1882 2891 1 chr1A.!!$R1 1009
10 TraesCS6A01G400700 chr2A 770663791 770664799 1008 False 1655.000000 1655 96.337 1886 2891 1 chr2A.!!$F1 1005
11 TraesCS6A01G400700 chr6B 706131844 706132609 765 True 564.000000 564 80.616 1135 1884 1 chr6B.!!$R7 749
12 TraesCS6A01G400700 chr6B 706528234 706528834 600 True 488.000000 488 81.414 1292 1897 1 chr6B.!!$R11 605
13 TraesCS6A01G400700 chr6B 705757519 705758062 543 True 486.000000 486 82.878 1338 1884 1 chr6B.!!$R1 546
14 TraesCS6A01G400700 chr6B 706097294 706097888 594 True 473.000000 473 81.167 1290 1884 1 chr6B.!!$R6 594
15 TraesCS6A01G400700 chr6B 706351632 706352158 526 True 468.000000 468 82.739 1338 1868 1 chr6B.!!$R8 530
16 TraesCS6A01G400700 chr6B 706408617 706409144 527 True 462.000000 462 82.552 1338 1868 1 chr6B.!!$R9 530
17 TraesCS6A01G400700 chr6B 706443200 706443794 594 True 457.000000 457 80.667 1290 1884 1 chr6B.!!$R10 594
18 TraesCS6A01G400700 chr6B 705580451 705581545 1094 True 427.000000 569 82.616 782 1884 2 chr6B.!!$R12 1102
19 TraesCS6A01G400700 chr6B 705628753 705629901 1148 True 405.000000 564 82.448 795 1884 2 chr6B.!!$R13 1089
20 TraesCS6A01G400700 chr6D 463079214 463079804 590 True 479.000000 479 81.407 1291 1884 1 chr6D.!!$R2 593
21 TraesCS6A01G400700 chr6D 463072951 463073494 543 True 470.000000 470 82.332 1338 1884 1 chr6D.!!$R1 546
22 TraesCS6A01G400700 chr6D 462880601 462881865 1264 True 205.666667 278 85.136 84 1296 3 chr6D.!!$R3 1212

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
332 435 0.031616 ACCCTCCCTTTGTTTGCCAA 60.032 50.0 0.00 0.00 0.0 4.52 F
462 565 0.036164 TTGTCACGCTGGCCAGTTAT 59.964 50.0 32.81 16.47 0.0 1.89 F
594 705 0.038166 TCAGGCACCATCCCAAGAAC 59.962 55.0 0.00 0.00 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1404 1655 0.545646 AGGATCTCAAGGCTTGCCTC 59.454 55.000 22.31 16.38 0.00 4.70 R
1645 1905 0.667792 GTCCCTCGCAGTGAGTTGTC 60.668 60.000 10.16 0.00 43.64 3.18 R
1980 2243 1.483827 GAACCGGTACTAAAGGAGGGG 59.516 57.143 8.00 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.627945 AGCATTGCTATTTTCGTCGGA 58.372 42.857 10.00 0.00 36.99 4.55
24 25 3.006940 AGCATTGCTATTTTCGTCGGAA 58.993 40.909 10.00 0.00 36.99 4.30
25 26 3.438781 AGCATTGCTATTTTCGTCGGAAA 59.561 39.130 10.00 0.14 37.48 3.13
26 27 4.096382 AGCATTGCTATTTTCGTCGGAAAT 59.904 37.500 15.59 15.59 38.39 2.17
27 28 4.204978 GCATTGCTATTTTCGTCGGAAATG 59.795 41.667 19.69 11.46 41.54 2.32
28 29 5.331902 CATTGCTATTTTCGTCGGAAATGT 58.668 37.500 19.69 0.00 41.54 2.71
29 30 6.482835 CATTGCTATTTTCGTCGGAAATGTA 58.517 36.000 19.69 8.04 41.54 2.29
30 31 5.459110 TGCTATTTTCGTCGGAAATGTAC 57.541 39.130 19.69 10.24 41.54 2.90
31 32 4.031991 TGCTATTTTCGTCGGAAATGTACG 59.968 41.667 19.69 7.98 41.54 3.67
32 33 4.266029 GCTATTTTCGTCGGAAATGTACGA 59.734 41.667 19.69 0.00 41.54 3.43
35 36 2.702898 TCGTCGGAAATGTACGAACA 57.297 45.000 0.00 0.00 42.18 3.18
36 37 2.318578 TCGTCGGAAATGTACGAACAC 58.681 47.619 0.00 0.00 42.18 3.32
37 38 2.030893 TCGTCGGAAATGTACGAACACT 60.031 45.455 0.00 0.00 42.18 3.55
38 39 2.727798 CGTCGGAAATGTACGAACACTT 59.272 45.455 0.00 0.00 41.17 3.16
39 40 3.913763 CGTCGGAAATGTACGAACACTTA 59.086 43.478 0.00 0.00 41.17 2.24
40 41 4.201428 CGTCGGAAATGTACGAACACTTAC 60.201 45.833 0.00 0.00 41.17 2.34
41 42 4.681025 GTCGGAAATGTACGAACACTTACA 59.319 41.667 0.00 0.00 41.17 2.41
42 43 5.175491 GTCGGAAATGTACGAACACTTACAA 59.825 40.000 0.00 0.00 41.17 2.41
43 44 5.175491 TCGGAAATGTACGAACACTTACAAC 59.825 40.000 0.00 0.00 38.78 3.32
44 45 5.050904 CGGAAATGTACGAACACTTACAACA 60.051 40.000 0.00 0.00 38.78 3.33
45 46 6.509837 CGGAAATGTACGAACACTTACAACAA 60.510 38.462 0.00 0.00 38.78 2.83
46 47 7.357303 GGAAATGTACGAACACTTACAACAAT 58.643 34.615 0.00 0.00 38.78 2.71
47 48 8.497554 GGAAATGTACGAACACTTACAACAATA 58.502 33.333 0.00 0.00 38.78 1.90
48 49 9.525007 GAAATGTACGAACACTTACAACAATAG 57.475 33.333 0.00 0.00 38.78 1.73
49 50 7.591006 ATGTACGAACACTTACAACAATAGG 57.409 36.000 0.00 0.00 38.78 2.57
50 51 6.514947 TGTACGAACACTTACAACAATAGGT 58.485 36.000 0.00 0.00 0.00 3.08
51 52 7.656412 TGTACGAACACTTACAACAATAGGTA 58.344 34.615 0.00 0.00 0.00 3.08
52 53 7.594758 TGTACGAACACTTACAACAATAGGTAC 59.405 37.037 0.00 0.00 0.00 3.34
53 54 6.514947 ACGAACACTTACAACAATAGGTACA 58.485 36.000 0.00 0.00 0.00 2.90
54 55 7.156673 ACGAACACTTACAACAATAGGTACAT 58.843 34.615 0.00 0.00 0.00 2.29
55 56 8.306038 ACGAACACTTACAACAATAGGTACATA 58.694 33.333 0.00 0.00 0.00 2.29
56 57 9.309516 CGAACACTTACAACAATAGGTACATAT 57.690 33.333 0.00 0.00 0.00 1.78
64 65 8.497910 ACAACAATAGGTACATATCATCTCCT 57.502 34.615 0.00 0.00 0.00 3.69
65 66 8.938883 ACAACAATAGGTACATATCATCTCCTT 58.061 33.333 0.00 0.00 0.00 3.36
73 74 9.271921 AGGTACATATCATCTCCTTAATATGCA 57.728 33.333 0.00 0.00 36.15 3.96
74 75 9.539825 GGTACATATCATCTCCTTAATATGCAG 57.460 37.037 0.00 0.00 36.15 4.41
75 76 9.039870 GTACATATCATCTCCTTAATATGCAGC 57.960 37.037 0.00 0.00 36.15 5.25
76 77 7.859540 ACATATCATCTCCTTAATATGCAGCT 58.140 34.615 0.00 0.00 36.15 4.24
77 78 7.769507 ACATATCATCTCCTTAATATGCAGCTG 59.230 37.037 10.11 10.11 36.15 4.24
78 79 5.813513 TCATCTCCTTAATATGCAGCTGA 57.186 39.130 20.43 2.70 0.00 4.26
79 80 5.545588 TCATCTCCTTAATATGCAGCTGAC 58.454 41.667 20.43 9.67 0.00 3.51
80 81 5.306419 TCATCTCCTTAATATGCAGCTGACT 59.694 40.000 20.43 5.73 0.00 3.41
82 83 4.063689 CTCCTTAATATGCAGCTGACTGG 58.936 47.826 20.43 7.19 44.63 4.00
160 161 3.935828 GGACAGAGCAACTTGTCTATTCC 59.064 47.826 4.82 0.17 31.94 3.01
170 171 3.650942 ACTTGTCTATTCCAGTTCCACCA 59.349 43.478 0.00 0.00 0.00 4.17
180 181 1.682854 CAGTTCCACCACAACTGCAAT 59.317 47.619 0.00 0.00 43.18 3.56
184 185 5.182950 CAGTTCCACCACAACTGCAATATAA 59.817 40.000 0.00 0.00 43.18 0.98
196 197 7.495934 ACAACTGCAATATAAGTGTATGGTCTC 59.504 37.037 0.00 0.00 0.00 3.36
198 199 6.099701 ACTGCAATATAAGTGTATGGTCTCCA 59.900 38.462 0.00 0.00 38.19 3.86
232 233 5.815581 TGGTCTTACCATGCATACTTTCTT 58.184 37.500 0.00 0.00 44.79 2.52
233 234 6.953101 TGGTCTTACCATGCATACTTTCTTA 58.047 36.000 0.00 0.00 44.79 2.10
234 235 6.821665 TGGTCTTACCATGCATACTTTCTTAC 59.178 38.462 0.00 0.00 44.79 2.34
235 236 6.821665 GGTCTTACCATGCATACTTTCTTACA 59.178 38.462 0.00 0.00 38.42 2.41
236 237 7.201617 GGTCTTACCATGCATACTTTCTTACAC 60.202 40.741 0.00 0.00 38.42 2.90
237 238 7.549488 GTCTTACCATGCATACTTTCTTACACT 59.451 37.037 0.00 0.00 0.00 3.55
238 239 7.764443 TCTTACCATGCATACTTTCTTACACTC 59.236 37.037 0.00 0.00 0.00 3.51
239 240 4.870426 ACCATGCATACTTTCTTACACTCG 59.130 41.667 0.00 0.00 0.00 4.18
241 242 5.755375 CCATGCATACTTTCTTACACTCGAT 59.245 40.000 0.00 0.00 0.00 3.59
243 244 4.566759 TGCATACTTTCTTACACTCGATGC 59.433 41.667 0.00 0.00 38.09 3.91
257 259 1.933181 TCGATGCGTGGCTAGAATTTG 59.067 47.619 0.00 0.00 0.00 2.32
258 260 1.595489 CGATGCGTGGCTAGAATTTGC 60.595 52.381 0.00 0.00 0.00 3.68
284 286 2.877097 TTGGACAGTACCATGCACAT 57.123 45.000 0.00 0.00 39.82 3.21
286 288 1.065491 TGGACAGTACCATGCACATCC 60.065 52.381 0.00 9.99 34.77 3.51
287 289 1.065491 GGACAGTACCATGCACATCCA 60.065 52.381 0.00 0.00 0.00 3.41
288 290 2.617788 GGACAGTACCATGCACATCCAA 60.618 50.000 0.00 0.00 0.00 3.53
289 291 2.420022 GACAGTACCATGCACATCCAAC 59.580 50.000 0.00 0.00 0.00 3.77
290 292 2.224744 ACAGTACCATGCACATCCAACA 60.225 45.455 0.00 0.00 0.00 3.33
291 293 2.162208 CAGTACCATGCACATCCAACAC 59.838 50.000 0.00 0.00 0.00 3.32
292 294 1.472480 GTACCATGCACATCCAACACC 59.528 52.381 0.00 0.00 0.00 4.16
293 295 0.899717 ACCATGCACATCCAACACCC 60.900 55.000 0.00 0.00 0.00 4.61
294 296 0.899253 CCATGCACATCCAACACCCA 60.899 55.000 0.00 0.00 0.00 4.51
295 297 0.528924 CATGCACATCCAACACCCAG 59.471 55.000 0.00 0.00 0.00 4.45
307 410 3.747529 CCAACACCCAGATTTTTGAATGC 59.252 43.478 0.00 0.00 0.00 3.56
309 412 4.261578 ACACCCAGATTTTTGAATGCTG 57.738 40.909 0.00 0.00 0.00 4.41
312 415 2.027929 CCCAGATTTTTGAATGCTGGCA 60.028 45.455 0.00 0.00 43.65 4.92
315 418 3.434299 CAGATTTTTGAATGCTGGCAACC 59.566 43.478 0.00 0.00 0.00 3.77
328 431 0.392706 GGCAACCCTCCCTTTGTTTG 59.607 55.000 0.00 0.00 0.00 2.93
332 435 0.031616 ACCCTCCCTTTGTTTGCCAA 60.032 50.000 0.00 0.00 0.00 4.52
333 436 0.392706 CCCTCCCTTTGTTTGCCAAC 59.607 55.000 0.00 0.00 31.20 3.77
334 437 1.118838 CCTCCCTTTGTTTGCCAACA 58.881 50.000 0.00 0.00 41.39 3.33
346 449 6.641169 TGTTTGCCAACAATAAGTACATCA 57.359 33.333 0.00 0.00 40.10 3.07
347 450 7.225784 TGTTTGCCAACAATAAGTACATCAT 57.774 32.000 0.00 0.00 40.10 2.45
348 451 7.665690 TGTTTGCCAACAATAAGTACATCATT 58.334 30.769 0.00 0.00 40.10 2.57
349 452 8.147058 TGTTTGCCAACAATAAGTACATCATTT 58.853 29.630 0.00 0.00 40.10 2.32
350 453 8.987890 GTTTGCCAACAATAAGTACATCATTTT 58.012 29.630 0.00 0.00 35.21 1.82
362 465 7.418337 AGTACATCATTTTAAATCCAACCCC 57.582 36.000 0.00 0.00 0.00 4.95
363 466 5.692115 ACATCATTTTAAATCCAACCCCC 57.308 39.130 0.00 0.00 0.00 5.40
364 467 5.097234 ACATCATTTTAAATCCAACCCCCA 58.903 37.500 0.00 0.00 0.00 4.96
365 468 5.549619 ACATCATTTTAAATCCAACCCCCAA 59.450 36.000 0.00 0.00 0.00 4.12
366 469 6.044871 ACATCATTTTAAATCCAACCCCCAAA 59.955 34.615 0.00 0.00 0.00 3.28
367 470 6.515512 TCATTTTAAATCCAACCCCCAAAA 57.484 33.333 0.00 0.00 0.00 2.44
368 471 7.096402 TCATTTTAAATCCAACCCCCAAAAT 57.904 32.000 0.00 0.00 0.00 1.82
369 472 6.944862 TCATTTTAAATCCAACCCCCAAAATG 59.055 34.615 9.48 9.48 40.59 2.32
370 473 6.515512 TTTTAAATCCAACCCCCAAAATGA 57.484 33.333 0.00 0.00 0.00 2.57
371 474 6.515512 TTTAAATCCAACCCCCAAAATGAA 57.484 33.333 0.00 0.00 0.00 2.57
372 475 6.710499 TTAAATCCAACCCCCAAAATGAAT 57.290 33.333 0.00 0.00 0.00 2.57
373 476 7.814693 TTAAATCCAACCCCCAAAATGAATA 57.185 32.000 0.00 0.00 0.00 1.75
374 477 5.692115 AATCCAACCCCCAAAATGAATAC 57.308 39.130 0.00 0.00 0.00 1.89
375 478 3.445987 TCCAACCCCCAAAATGAATACC 58.554 45.455 0.00 0.00 0.00 2.73
376 479 2.503765 CCAACCCCCAAAATGAATACCC 59.496 50.000 0.00 0.00 0.00 3.69
377 480 3.177228 CAACCCCCAAAATGAATACCCA 58.823 45.455 0.00 0.00 0.00 4.51
378 481 3.779738 CAACCCCCAAAATGAATACCCAT 59.220 43.478 0.00 0.00 0.00 4.00
379 482 3.383223 ACCCCCAAAATGAATACCCATG 58.617 45.455 0.00 0.00 0.00 3.66
380 483 3.013417 ACCCCCAAAATGAATACCCATGA 59.987 43.478 0.00 0.00 0.00 3.07
396 499 3.249320 CCCATGAATGTACTCAGCAATCG 59.751 47.826 0.00 0.00 0.00 3.34
398 501 3.610040 TGAATGTACTCAGCAATCGGT 57.390 42.857 0.00 0.00 0.00 4.69
400 503 5.276461 TGAATGTACTCAGCAATCGGTAT 57.724 39.130 0.00 0.00 0.00 2.73
403 506 7.269316 TGAATGTACTCAGCAATCGGTATAAA 58.731 34.615 0.00 0.00 0.00 1.40
413 516 8.397906 TCAGCAATCGGTATAAAGAATCAAAAG 58.602 33.333 0.00 0.00 0.00 2.27
414 517 7.645340 CAGCAATCGGTATAAAGAATCAAAAGG 59.355 37.037 0.00 0.00 0.00 3.11
416 519 8.352942 GCAATCGGTATAAAGAATCAAAAGGAT 58.647 33.333 0.00 0.00 38.05 3.24
457 560 1.971167 GGATTTGTCACGCTGGCCA 60.971 57.895 4.71 4.71 0.00 5.36
458 561 1.503542 GATTTGTCACGCTGGCCAG 59.496 57.895 29.34 29.34 0.00 4.85
459 562 1.228245 ATTTGTCACGCTGGCCAGT 60.228 52.632 32.81 13.61 0.00 4.00
462 565 0.036164 TTGTCACGCTGGCCAGTTAT 59.964 50.000 32.81 16.47 0.00 1.89
463 566 0.036164 TGTCACGCTGGCCAGTTATT 59.964 50.000 32.81 12.73 0.00 1.40
472 575 1.985159 TGGCCAGTTATTGACCACTCT 59.015 47.619 0.00 0.00 33.98 3.24
473 576 2.027192 TGGCCAGTTATTGACCACTCTC 60.027 50.000 0.00 0.00 33.98 3.20
475 578 3.003480 GCCAGTTATTGACCACTCTCAC 58.997 50.000 0.00 0.00 0.00 3.51
481 584 6.533012 CAGTTATTGACCACTCTCACTGTATG 59.467 42.308 0.00 0.00 0.00 2.39
489 592 4.462834 CCACTCTCACTGTATGGTCTACAA 59.537 45.833 0.00 0.00 0.00 2.41
490 593 5.393569 CCACTCTCACTGTATGGTCTACAAG 60.394 48.000 0.00 0.00 0.00 3.16
491 594 4.158764 ACTCTCACTGTATGGTCTACAAGC 59.841 45.833 0.00 0.00 0.00 4.01
492 595 4.086457 TCTCACTGTATGGTCTACAAGCA 58.914 43.478 0.00 0.00 40.26 3.91
494 597 5.011635 TCTCACTGTATGGTCTACAAGCAAA 59.988 40.000 0.00 0.00 39.21 3.68
495 598 5.237815 TCACTGTATGGTCTACAAGCAAAG 58.762 41.667 0.00 0.00 39.21 2.77
496 599 4.003648 ACTGTATGGTCTACAAGCAAAGC 58.996 43.478 0.00 0.00 39.21 3.51
497 600 4.256920 CTGTATGGTCTACAAGCAAAGCT 58.743 43.478 0.00 0.00 42.56 3.74
499 602 5.419542 TGTATGGTCTACAAGCAAAGCTAG 58.580 41.667 0.00 0.00 38.25 3.42
500 603 4.559862 ATGGTCTACAAGCAAAGCTAGT 57.440 40.909 0.00 0.00 38.25 2.57
504 607 3.680458 GTCTACAAGCAAAGCTAGTCCAC 59.320 47.826 0.00 0.00 38.25 4.02
505 608 1.512926 ACAAGCAAAGCTAGTCCACG 58.487 50.000 0.00 0.00 38.25 4.94
506 609 0.166814 CAAGCAAAGCTAGTCCACGC 59.833 55.000 0.00 0.00 38.25 5.34
509 612 1.026718 GCAAAGCTAGTCCACGCCAT 61.027 55.000 0.00 0.00 0.00 4.40
527 630 3.548770 CCATGGTCTTGTCATGCTGTAT 58.451 45.455 2.57 0.00 40.29 2.29
545 648 5.522460 GCTGTATGCATACTTTTCTACCGAA 59.478 40.000 31.35 10.75 42.31 4.30
548 651 9.256477 CTGTATGCATACTTTTCTACCGAATTA 57.744 33.333 31.35 9.62 34.41 1.40
552 655 6.474427 TGCATACTTTTCTACCGAATTAGACG 59.526 38.462 0.00 0.00 0.00 4.18
567 678 1.079405 GACGGTCCCTGAATTGCGA 60.079 57.895 0.00 0.00 0.00 5.10
569 680 1.079127 CGGTCCCTGAATTGCGACT 60.079 57.895 0.00 0.00 0.00 4.18
574 685 3.270877 GTCCCTGAATTGCGACTGTATT 58.729 45.455 0.00 0.00 0.00 1.89
589 700 1.638070 TGTATTTCAGGCACCATCCCA 59.362 47.619 0.00 0.00 0.00 4.37
590 701 2.042297 TGTATTTCAGGCACCATCCCAA 59.958 45.455 0.00 0.00 0.00 4.12
591 702 1.856629 ATTTCAGGCACCATCCCAAG 58.143 50.000 0.00 0.00 0.00 3.61
593 704 0.776810 TTCAGGCACCATCCCAAGAA 59.223 50.000 0.00 0.00 0.00 2.52
594 705 0.038166 TCAGGCACCATCCCAAGAAC 59.962 55.000 0.00 0.00 0.00 3.01
599 710 0.392998 CACCATCCCAAGAACCTCGG 60.393 60.000 0.00 0.00 0.00 4.63
602 713 1.923395 ATCCCAAGAACCTCGGCCA 60.923 57.895 2.24 0.00 0.00 5.36
604 715 2.742372 CCAAGAACCTCGGCCACG 60.742 66.667 2.24 0.00 42.74 4.94
611 722 4.873129 CCTCGGCCACGACATCCG 62.873 72.222 2.24 0.00 45.59 4.18
615 726 4.090588 GGCCACGACATCCGGGAA 62.091 66.667 0.00 0.00 46.66 3.97
620 731 2.264480 CGACATCCGGGAAGCACA 59.736 61.111 0.00 0.00 33.91 4.57
636 747 1.202245 GCACAGCCGTCACAAAGAAAA 60.202 47.619 0.00 0.00 0.00 2.29
638 749 1.404035 ACAGCCGTCACAAAGAAAACC 59.596 47.619 0.00 0.00 0.00 3.27
639 750 1.403679 CAGCCGTCACAAAGAAAACCA 59.596 47.619 0.00 0.00 0.00 3.67
690 804 8.116624 CGATTCCGGCTGAAAAGTATATATAC 57.883 38.462 14.05 14.05 36.33 1.47
691 805 7.044249 CGATTCCGGCTGAAAAGTATATATACG 60.044 40.741 15.57 3.66 36.07 3.06
692 806 6.579666 TCCGGCTGAAAAGTATATATACGT 57.420 37.500 15.57 10.79 38.28 3.57
693 807 7.686438 TCCGGCTGAAAAGTATATATACGTA 57.314 36.000 15.57 0.00 38.28 3.57
706 820 9.165035 AGTATATATACGTAAGAAGAGCTGGAC 57.835 37.037 15.57 0.00 43.62 4.02
714 828 1.215673 AGAAGAGCTGGACCGATCCTA 59.784 52.381 0.00 0.00 46.43 2.94
716 830 0.553819 AGAGCTGGACCGATCCTACT 59.446 55.000 0.00 0.00 46.43 2.57
717 831 0.671251 GAGCTGGACCGATCCTACTG 59.329 60.000 0.00 0.00 46.43 2.74
724 838 3.294214 GGACCGATCCTACTGGAGTAAA 58.706 50.000 0.00 0.00 46.91 2.01
725 839 3.703052 GGACCGATCCTACTGGAGTAAAA 59.297 47.826 0.00 0.00 46.91 1.52
747 861 5.768980 AAAAAGATCCTGATGGAGTGAGA 57.231 39.130 0.00 0.00 46.91 3.27
748 862 5.768980 AAAAGATCCTGATGGAGTGAGAA 57.231 39.130 0.00 0.00 46.91 2.87
749 863 5.768980 AAAGATCCTGATGGAGTGAGAAA 57.231 39.130 0.00 0.00 46.91 2.52
750 864 5.768980 AAGATCCTGATGGAGTGAGAAAA 57.231 39.130 0.00 0.00 46.91 2.29
751 865 5.972327 AGATCCTGATGGAGTGAGAAAAT 57.028 39.130 0.00 0.00 46.91 1.82
752 866 6.324601 AGATCCTGATGGAGTGAGAAAATT 57.675 37.500 0.00 0.00 46.91 1.82
753 867 6.729428 AGATCCTGATGGAGTGAGAAAATTT 58.271 36.000 0.00 0.00 46.91 1.82
754 868 6.602406 AGATCCTGATGGAGTGAGAAAATTTG 59.398 38.462 0.00 0.00 46.91 2.32
755 869 4.460382 TCCTGATGGAGTGAGAAAATTTGC 59.540 41.667 0.00 0.00 37.46 3.68
756 870 4.461781 CCTGATGGAGTGAGAAAATTTGCT 59.538 41.667 0.00 0.00 34.57 3.91
757 871 5.392811 CCTGATGGAGTGAGAAAATTTGCTC 60.393 44.000 18.08 18.08 34.57 4.26
758 872 4.460382 TGATGGAGTGAGAAAATTTGCTCC 59.540 41.667 21.33 17.06 41.92 4.70
759 873 4.104383 TGGAGTGAGAAAATTTGCTCCT 57.896 40.909 21.33 17.27 42.04 3.69
760 874 3.822735 TGGAGTGAGAAAATTTGCTCCTG 59.177 43.478 21.33 0.00 42.04 3.86
761 875 3.192212 GGAGTGAGAAAATTTGCTCCTGG 59.808 47.826 21.33 0.00 39.36 4.45
762 876 3.160269 AGTGAGAAAATTTGCTCCTGGG 58.840 45.455 21.33 0.00 0.00 4.45
763 877 2.232208 GTGAGAAAATTTGCTCCTGGGG 59.768 50.000 21.33 0.00 0.00 4.96
764 878 1.205655 GAGAAAATTTGCTCCTGGGGC 59.794 52.381 12.83 12.83 0.00 5.80
765 879 0.250234 GAAAATTTGCTCCTGGGGCC 59.750 55.000 17.57 0.00 0.00 5.80
766 880 0.178894 AAAATTTGCTCCTGGGGCCT 60.179 50.000 17.57 0.00 0.00 5.19
767 881 0.615827 AAATTTGCTCCTGGGGCCTC 60.616 55.000 17.57 0.00 0.00 4.70
768 882 1.803453 AATTTGCTCCTGGGGCCTCA 61.803 55.000 17.57 4.49 0.00 3.86
769 883 2.220786 ATTTGCTCCTGGGGCCTCAG 62.221 60.000 27.05 27.05 34.70 3.35
780 894 4.421365 GCCTCAGCCAAATGACCA 57.579 55.556 0.00 0.00 0.00 4.02
833 947 0.603569 GACTTGAGGTCTTCGCTCCA 59.396 55.000 0.00 0.00 41.46 3.86
834 948 1.205893 GACTTGAGGTCTTCGCTCCAT 59.794 52.381 0.00 0.00 41.46 3.41
846 960 4.431131 CTCCATTGGCGGGCAGGT 62.431 66.667 3.91 0.00 0.00 4.00
869 983 4.487714 TCAGATAAGGGCGTGAGAAAAT 57.512 40.909 0.00 0.00 0.00 1.82
889 1004 3.656651 TTTGCAGATAATTCAGACGCG 57.343 42.857 3.53 3.53 0.00 6.01
894 1009 4.042398 GCAGATAATTCAGACGCGAAGTA 58.958 43.478 15.93 0.00 30.81 2.24
973 1110 2.005451 GCATCCAGCTTACAGACACAG 58.995 52.381 0.00 0.00 41.15 3.66
1007 1144 0.968405 GGCAGCAAAACCATGGAAGA 59.032 50.000 21.47 0.00 0.00 2.87
1033 1170 2.202570 CGCCGTTCCGTTCGATCT 60.203 61.111 0.00 0.00 0.00 2.75
1037 1174 2.505498 CGTTCCGTTCGATCTGGCG 61.505 63.158 0.00 0.00 0.00 5.69
1039 1176 4.508128 TCCGTTCGATCTGGCGGC 62.508 66.667 0.00 0.00 43.45 6.53
1051 1188 4.404654 GGCGGCGCAAAGGTGAAG 62.405 66.667 34.36 0.00 0.00 3.02
1052 1189 3.660111 GCGGCGCAAAGGTGAAGT 61.660 61.111 29.21 0.00 0.00 3.01
1053 1190 3.030652 CGGCGCAAAGGTGAAGTT 58.969 55.556 10.83 0.00 0.00 2.66
1082 1305 5.010922 TGCTAAGCAAACATCCATCTTTTGT 59.989 36.000 0.00 0.00 34.76 2.83
1098 1324 4.698304 TCTTTTGTCTTGTCGGTTTTGTCT 59.302 37.500 0.00 0.00 0.00 3.41
1102 1328 3.754323 TGTCTTGTCGGTTTTGTCTTTGT 59.246 39.130 0.00 0.00 0.00 2.83
1106 1332 2.490115 TGTCGGTTTTGTCTTTGTTGCT 59.510 40.909 0.00 0.00 0.00 3.91
1108 1334 4.336993 TGTCGGTTTTGTCTTTGTTGCTAT 59.663 37.500 0.00 0.00 0.00 2.97
1109 1335 4.675114 GTCGGTTTTGTCTTTGTTGCTATG 59.325 41.667 0.00 0.00 0.00 2.23
1110 1336 4.576873 TCGGTTTTGTCTTTGTTGCTATGA 59.423 37.500 0.00 0.00 0.00 2.15
1112 1338 6.428465 TCGGTTTTGTCTTTGTTGCTATGATA 59.572 34.615 0.00 0.00 0.00 2.15
1113 1339 7.041030 TCGGTTTTGTCTTTGTTGCTATGATAA 60.041 33.333 0.00 0.00 0.00 1.75
1114 1340 7.060633 CGGTTTTGTCTTTGTTGCTATGATAAC 59.939 37.037 0.00 0.00 0.00 1.89
1115 1341 8.082242 GGTTTTGTCTTTGTTGCTATGATAACT 58.918 33.333 0.00 0.00 0.00 2.24
1116 1342 8.905702 GTTTTGTCTTTGTTGCTATGATAACTG 58.094 33.333 0.00 0.00 0.00 3.16
1117 1343 6.741992 TGTCTTTGTTGCTATGATAACTGG 57.258 37.500 0.00 0.00 0.00 4.00
1118 1344 6.472016 TGTCTTTGTTGCTATGATAACTGGA 58.528 36.000 0.00 0.00 0.00 3.86
1119 1345 6.595326 TGTCTTTGTTGCTATGATAACTGGAG 59.405 38.462 0.00 0.00 0.00 3.86
1120 1346 5.586243 TCTTTGTTGCTATGATAACTGGAGC 59.414 40.000 0.00 0.00 0.00 4.70
1122 1348 2.802816 GTTGCTATGATAACTGGAGCGG 59.197 50.000 0.00 0.00 35.88 5.52
1123 1349 1.270305 TGCTATGATAACTGGAGCGGC 60.270 52.381 0.00 0.00 35.88 6.53
1124 1350 1.001406 GCTATGATAACTGGAGCGGCT 59.999 52.381 0.00 0.00 0.00 5.52
1125 1351 2.231478 GCTATGATAACTGGAGCGGCTA 59.769 50.000 0.60 0.00 0.00 3.93
1126 1352 2.821991 ATGATAACTGGAGCGGCTAC 57.178 50.000 4.92 4.92 0.00 3.58
1127 1353 0.750850 TGATAACTGGAGCGGCTACC 59.249 55.000 10.28 10.35 0.00 3.18
1128 1354 0.750850 GATAACTGGAGCGGCTACCA 59.249 55.000 10.28 14.26 34.81 3.25
1131 1357 3.774528 CTGGAGCGGCTACCAGCA 61.775 66.667 25.09 3.23 44.75 4.41
1146 1372 4.639135 ACCAGCAAACAAACTCTTTCTC 57.361 40.909 0.00 0.00 0.00 2.87
1193 1419 5.565637 GCATCCTCGATCTAATGCTTCTGTA 60.566 44.000 11.81 0.00 40.98 2.74
1200 1432 5.521735 CGATCTAATGCTTCTGTAGTTGCTT 59.478 40.000 0.00 0.00 0.00 3.91
1209 1441 6.369890 TGCTTCTGTAGTTGCTTCTCATTTAG 59.630 38.462 0.00 0.00 0.00 1.85
1210 1442 6.370166 GCTTCTGTAGTTGCTTCTCATTTAGT 59.630 38.462 0.00 0.00 0.00 2.24
1211 1443 7.412455 GCTTCTGTAGTTGCTTCTCATTTAGTC 60.412 40.741 0.00 0.00 0.00 2.59
1212 1444 7.233389 TCTGTAGTTGCTTCTCATTTAGTCT 57.767 36.000 0.00 0.00 0.00 3.24
1213 1445 7.671302 TCTGTAGTTGCTTCTCATTTAGTCTT 58.329 34.615 0.00 0.00 0.00 3.01
1214 1446 7.815068 TCTGTAGTTGCTTCTCATTTAGTCTTC 59.185 37.037 0.00 0.00 0.00 2.87
1268 1501 1.968017 CATGTGCCAGTCAAGCGGT 60.968 57.895 0.00 0.00 0.00 5.68
1269 1502 1.228245 ATGTGCCAGTCAAGCGGTT 60.228 52.632 0.00 0.00 0.00 4.44
1307 1552 6.394809 TCATTACGCTACTCATTTCTTGTGA 58.605 36.000 0.00 0.00 0.00 3.58
1311 1556 5.779922 ACGCTACTCATTTCTTGTGAAGTA 58.220 37.500 0.00 0.00 33.28 2.24
1320 1565 2.703416 TCTTGTGAAGTAGGCAGCATG 58.297 47.619 0.00 0.00 40.87 4.06
1336 1584 1.600636 ATGTGTTGCTCCACGGTGG 60.601 57.895 21.27 21.27 38.20 4.61
1374 1625 0.179092 TGGACATGATCTCGCTGCTG 60.179 55.000 0.00 0.00 0.00 4.41
1404 1655 2.100631 GGCCATCACCAACGACTCG 61.101 63.158 0.00 0.00 0.00 4.18
1407 1658 0.458543 CCATCACCAACGACTCGAGG 60.459 60.000 18.41 9.08 0.00 4.63
1561 1821 3.492137 CGGGAATCTAACGTTCCTTAGGG 60.492 52.174 2.82 0.00 43.70 3.53
1562 1822 3.708121 GGGAATCTAACGTTCCTTAGGGA 59.292 47.826 2.82 0.00 43.70 4.20
1592 1852 0.981183 TCCAGTAATGGCTTCACCGT 59.019 50.000 3.77 0.00 43.94 4.83
1608 1868 1.231221 CCGTCGAGATACCTCCTCTG 58.769 60.000 0.00 0.00 36.04 3.35
1613 1873 2.241430 TCGAGATACCTCCTCTGAACCA 59.759 50.000 0.00 0.00 36.04 3.67
1645 1905 0.618981 GGAGTACCTTGACTTGGGGG 59.381 60.000 0.00 0.00 0.00 5.40
1703 1963 2.409948 AACTGCTCCAATCTACAGGC 57.590 50.000 0.00 0.00 34.40 4.85
1750 2011 3.239861 GGAGAACTTCCCAGCAGTG 57.760 57.895 0.00 0.00 40.37 3.66
1780 2041 5.361571 TGCCTATCCAATCTAGTGTCGTTAA 59.638 40.000 0.00 0.00 0.00 2.01
1783 2044 7.095607 GCCTATCCAATCTAGTGTCGTTAATTG 60.096 40.741 0.00 0.00 0.00 2.32
1959 2220 5.862466 GGTTTAGGAACCGGCACTAAAGTG 61.862 50.000 19.89 5.73 45.43 3.16
2099 2366 3.775261 ACACCAACCGGTACTAAATGT 57.225 42.857 8.00 4.16 46.94 2.71
2107 2374 2.162809 CCGGTACTAAATGTTTGTGGGC 59.837 50.000 0.00 0.00 0.00 5.36
2317 2584 5.317733 ACCGCTAGCTATCTAATCATCAC 57.682 43.478 13.93 0.00 0.00 3.06
2363 2630 8.062065 AGGAAACATTCACTTTGTAACAGAAA 57.938 30.769 0.00 0.00 0.00 2.52
2466 2736 5.942961 AGCATGAACTAGTAGCTACTCCTA 58.057 41.667 29.28 11.97 37.73 2.94
2478 2748 2.688515 GCTACTCCTACTGCTCCCTCTT 60.689 54.545 0.00 0.00 0.00 2.85
2489 2759 5.971493 ACTGCTCCCTCTTAGGTAGAATAT 58.029 41.667 0.00 0.00 31.93 1.28
2632 2902 9.023962 ACAATTTTGCTCCAATCTTTCACTATA 57.976 29.630 0.00 0.00 0.00 1.31
2640 2910 8.193438 GCTCCAATCTTTCACTATAAAGCATTT 58.807 33.333 0.00 0.00 43.42 2.32
2734 3004 2.263077 CGACCTTTTGTCTCGATCCAG 58.737 52.381 0.00 0.00 42.13 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.787785 TCCGACGAAAATAGCAATGCTA 58.212 40.909 17.97 17.97 45.55 3.49
3 4 2.627945 TCCGACGAAAATAGCAATGCT 58.372 42.857 13.92 13.92 43.41 3.79
4 5 3.398954 TTCCGACGAAAATAGCAATGC 57.601 42.857 0.00 0.00 0.00 3.56
6 7 5.560966 ACATTTCCGACGAAAATAGCAAT 57.439 34.783 0.00 0.00 41.25 3.56
7 8 5.444877 CGTACATTTCCGACGAAAATAGCAA 60.445 40.000 0.00 0.00 41.25 3.91
8 9 4.031991 CGTACATTTCCGACGAAAATAGCA 59.968 41.667 0.00 0.00 41.25 3.49
9 10 4.266029 TCGTACATTTCCGACGAAAATAGC 59.734 41.667 0.00 0.00 42.23 2.97
10 11 5.937165 TCGTACATTTCCGACGAAAATAG 57.063 39.130 0.00 0.00 42.23 1.73
16 17 2.030893 AGTGTTCGTACATTTCCGACGA 60.031 45.455 0.00 0.00 43.38 4.20
17 18 2.322161 AGTGTTCGTACATTTCCGACG 58.678 47.619 0.00 0.00 36.50 5.12
18 19 4.681025 TGTAAGTGTTCGTACATTTCCGAC 59.319 41.667 6.21 1.44 35.95 4.79
19 20 4.869215 TGTAAGTGTTCGTACATTTCCGA 58.131 39.130 6.21 0.00 35.95 4.55
20 21 5.050904 TGTTGTAAGTGTTCGTACATTTCCG 60.051 40.000 6.21 0.00 38.06 4.30
21 22 6.289745 TGTTGTAAGTGTTCGTACATTTCC 57.710 37.500 6.21 0.00 38.06 3.13
22 23 9.525007 CTATTGTTGTAAGTGTTCGTACATTTC 57.475 33.333 6.21 0.93 38.06 2.17
23 24 8.500773 CCTATTGTTGTAAGTGTTCGTACATTT 58.499 33.333 7.96 7.96 38.06 2.32
24 25 7.658575 ACCTATTGTTGTAAGTGTTCGTACATT 59.341 33.333 0.00 0.00 38.06 2.71
25 26 7.156673 ACCTATTGTTGTAAGTGTTCGTACAT 58.843 34.615 0.00 0.00 38.06 2.29
26 27 6.514947 ACCTATTGTTGTAAGTGTTCGTACA 58.485 36.000 0.00 0.00 36.91 2.90
27 28 7.594758 TGTACCTATTGTTGTAAGTGTTCGTAC 59.405 37.037 0.00 0.00 0.00 3.67
28 29 7.656412 TGTACCTATTGTTGTAAGTGTTCGTA 58.344 34.615 0.00 0.00 0.00 3.43
29 30 6.514947 TGTACCTATTGTTGTAAGTGTTCGT 58.485 36.000 0.00 0.00 0.00 3.85
30 31 7.591006 ATGTACCTATTGTTGTAAGTGTTCG 57.409 36.000 0.00 0.00 0.00 3.95
38 39 9.601810 AGGAGATGATATGTACCTATTGTTGTA 57.398 33.333 0.00 0.00 0.00 2.41
39 40 8.497910 AGGAGATGATATGTACCTATTGTTGT 57.502 34.615 0.00 0.00 0.00 3.32
47 48 9.271921 TGCATATTAAGGAGATGATATGTACCT 57.728 33.333 0.00 0.00 35.76 3.08
48 49 9.539825 CTGCATATTAAGGAGATGATATGTACC 57.460 37.037 0.00 0.00 35.76 3.34
49 50 9.039870 GCTGCATATTAAGGAGATGATATGTAC 57.960 37.037 0.00 0.00 35.76 2.90
50 51 8.985922 AGCTGCATATTAAGGAGATGATATGTA 58.014 33.333 1.02 0.00 35.76 2.29
51 52 7.769507 CAGCTGCATATTAAGGAGATGATATGT 59.230 37.037 0.00 0.00 42.40 2.29
52 53 7.985752 TCAGCTGCATATTAAGGAGATGATATG 59.014 37.037 9.47 0.00 43.30 1.78
53 54 8.087303 TCAGCTGCATATTAAGGAGATGATAT 57.913 34.615 9.47 0.00 43.30 1.63
54 55 7.486407 TCAGCTGCATATTAAGGAGATGATA 57.514 36.000 9.47 0.00 43.30 2.15
55 56 6.370186 TCAGCTGCATATTAAGGAGATGAT 57.630 37.500 9.47 0.00 43.30 2.45
56 57 5.306419 AGTCAGCTGCATATTAAGGAGATGA 59.694 40.000 9.47 4.58 45.38 2.92
57 58 5.408909 CAGTCAGCTGCATATTAAGGAGATG 59.591 44.000 9.47 0.02 41.37 2.90
58 59 5.512749 CCAGTCAGCTGCATATTAAGGAGAT 60.513 44.000 9.47 0.00 41.26 2.75
59 60 4.202295 CCAGTCAGCTGCATATTAAGGAGA 60.202 45.833 9.47 0.00 41.26 3.71
60 61 4.063689 CCAGTCAGCTGCATATTAAGGAG 58.936 47.826 9.47 0.00 41.26 3.69
61 62 3.711190 TCCAGTCAGCTGCATATTAAGGA 59.289 43.478 9.47 4.73 41.26 3.36
62 63 4.077300 TCCAGTCAGCTGCATATTAAGG 57.923 45.455 9.47 2.34 41.26 2.69
63 64 5.530171 ACATTCCAGTCAGCTGCATATTAAG 59.470 40.000 9.47 0.00 41.26 1.85
64 65 5.297527 CACATTCCAGTCAGCTGCATATTAA 59.702 40.000 9.47 0.00 41.26 1.40
65 66 4.818005 CACATTCCAGTCAGCTGCATATTA 59.182 41.667 9.47 0.00 41.26 0.98
66 67 3.630769 CACATTCCAGTCAGCTGCATATT 59.369 43.478 9.47 0.00 41.26 1.28
67 68 3.211865 CACATTCCAGTCAGCTGCATAT 58.788 45.455 9.47 0.00 41.26 1.78
68 69 2.026915 ACACATTCCAGTCAGCTGCATA 60.027 45.455 9.47 0.00 41.26 3.14
69 70 1.271762 ACACATTCCAGTCAGCTGCAT 60.272 47.619 9.47 0.00 41.26 3.96
70 71 0.109153 ACACATTCCAGTCAGCTGCA 59.891 50.000 9.47 0.00 41.26 4.41
71 72 1.242076 AACACATTCCAGTCAGCTGC 58.758 50.000 9.47 4.26 41.26 5.25
72 73 3.668447 ACTAACACATTCCAGTCAGCTG 58.332 45.455 7.63 7.63 42.22 4.24
73 74 4.067896 CAACTAACACATTCCAGTCAGCT 58.932 43.478 0.00 0.00 0.00 4.24
74 75 3.815401 ACAACTAACACATTCCAGTCAGC 59.185 43.478 0.00 0.00 0.00 4.26
75 76 4.319766 GCACAACTAACACATTCCAGTCAG 60.320 45.833 0.00 0.00 0.00 3.51
76 77 3.563808 GCACAACTAACACATTCCAGTCA 59.436 43.478 0.00 0.00 0.00 3.41
77 78 3.363970 CGCACAACTAACACATTCCAGTC 60.364 47.826 0.00 0.00 0.00 3.51
78 79 2.548057 CGCACAACTAACACATTCCAGT 59.452 45.455 0.00 0.00 0.00 4.00
79 80 2.805671 TCGCACAACTAACACATTCCAG 59.194 45.455 0.00 0.00 0.00 3.86
80 81 2.805671 CTCGCACAACTAACACATTCCA 59.194 45.455 0.00 0.00 0.00 3.53
81 82 2.159627 CCTCGCACAACTAACACATTCC 59.840 50.000 0.00 0.00 0.00 3.01
82 83 2.412847 GCCTCGCACAACTAACACATTC 60.413 50.000 0.00 0.00 0.00 2.67
170 171 7.338710 AGACCATACACTTATATTGCAGTTGT 58.661 34.615 0.00 0.00 0.00 3.32
180 181 4.966168 TGGCTTGGAGACCATACACTTATA 59.034 41.667 0.00 0.00 31.53 0.98
184 185 1.279271 GTGGCTTGGAGACCATACACT 59.721 52.381 0.00 0.00 38.46 3.55
216 217 4.870426 CGAGTGTAAGAAAGTATGCATGGT 59.130 41.667 10.16 0.00 0.00 3.55
227 228 2.333926 CCACGCATCGAGTGTAAGAAA 58.666 47.619 3.01 0.00 39.40 2.52
230 231 0.458543 AGCCACGCATCGAGTGTAAG 60.459 55.000 3.01 0.07 39.40 2.34
232 233 0.380733 CTAGCCACGCATCGAGTGTA 59.619 55.000 3.01 0.00 39.40 2.90
233 234 1.139734 CTAGCCACGCATCGAGTGT 59.860 57.895 3.01 0.00 42.97 3.55
234 235 0.179137 TTCTAGCCACGCATCGAGTG 60.179 55.000 0.00 0.00 39.19 3.51
235 236 0.747255 ATTCTAGCCACGCATCGAGT 59.253 50.000 0.00 0.00 0.00 4.18
236 237 1.858091 AATTCTAGCCACGCATCGAG 58.142 50.000 0.00 0.00 0.00 4.04
237 238 1.933181 CAAATTCTAGCCACGCATCGA 59.067 47.619 0.00 0.00 0.00 3.59
238 239 1.595489 GCAAATTCTAGCCACGCATCG 60.595 52.381 0.00 0.00 0.00 3.84
239 240 2.111041 GCAAATTCTAGCCACGCATC 57.889 50.000 0.00 0.00 0.00 3.91
284 286 4.502950 GCATTCAAAAATCTGGGTGTTGGA 60.503 41.667 0.00 0.00 0.00 3.53
286 288 4.449743 CAGCATTCAAAAATCTGGGTGTTG 59.550 41.667 0.00 0.00 0.00 3.33
287 289 4.503643 CCAGCATTCAAAAATCTGGGTGTT 60.504 41.667 0.00 0.00 36.98 3.32
288 290 3.007182 CCAGCATTCAAAAATCTGGGTGT 59.993 43.478 0.00 0.00 36.98 4.16
289 291 3.592059 CCAGCATTCAAAAATCTGGGTG 58.408 45.455 0.00 0.00 36.98 4.61
290 292 2.027837 GCCAGCATTCAAAAATCTGGGT 60.028 45.455 8.44 0.00 38.85 4.51
291 293 2.027929 TGCCAGCATTCAAAAATCTGGG 60.028 45.455 8.44 0.00 38.85 4.45
292 294 3.322211 TGCCAGCATTCAAAAATCTGG 57.678 42.857 2.43 2.43 40.02 3.86
293 295 3.434299 GGTTGCCAGCATTCAAAAATCTG 59.566 43.478 0.00 0.00 0.00 2.90
294 296 3.557686 GGGTTGCCAGCATTCAAAAATCT 60.558 43.478 0.00 0.00 0.00 2.40
295 297 2.743664 GGGTTGCCAGCATTCAAAAATC 59.256 45.455 0.00 0.00 0.00 2.17
307 410 0.469892 AACAAAGGGAGGGTTGCCAG 60.470 55.000 0.00 0.00 37.25 4.85
309 412 0.392706 CAAACAAAGGGAGGGTTGCC 59.607 55.000 0.00 0.00 34.44 4.52
312 415 0.031616 TGGCAAACAAAGGGAGGGTT 60.032 50.000 0.00 0.00 0.00 4.11
315 418 1.118838 TGTTGGCAAACAAAGGGAGG 58.881 50.000 3.53 0.00 43.32 4.30
338 441 6.382859 GGGGGTTGGATTTAAAATGATGTACT 59.617 38.462 0.00 0.00 0.00 2.73
339 442 6.155393 TGGGGGTTGGATTTAAAATGATGTAC 59.845 38.462 0.00 0.00 0.00 2.90
341 444 5.097234 TGGGGGTTGGATTTAAAATGATGT 58.903 37.500 0.00 0.00 0.00 3.06
342 445 5.690464 TGGGGGTTGGATTTAAAATGATG 57.310 39.130 0.00 0.00 0.00 3.07
343 446 6.710499 TTTGGGGGTTGGATTTAAAATGAT 57.290 33.333 0.00 0.00 0.00 2.45
345 448 6.944862 TCATTTTGGGGGTTGGATTTAAAATG 59.055 34.615 0.00 0.00 41.63 2.32
346 449 7.096402 TCATTTTGGGGGTTGGATTTAAAAT 57.904 32.000 0.00 0.00 0.00 1.82
347 450 6.515512 TCATTTTGGGGGTTGGATTTAAAA 57.484 33.333 0.00 0.00 0.00 1.52
348 451 6.515512 TTCATTTTGGGGGTTGGATTTAAA 57.484 33.333 0.00 0.00 0.00 1.52
349 452 6.710499 ATTCATTTTGGGGGTTGGATTTAA 57.290 33.333 0.00 0.00 0.00 1.52
350 453 6.157123 GGTATTCATTTTGGGGGTTGGATTTA 59.843 38.462 0.00 0.00 0.00 1.40
351 454 5.045213 GGTATTCATTTTGGGGGTTGGATTT 60.045 40.000 0.00 0.00 0.00 2.17
352 455 4.473196 GGTATTCATTTTGGGGGTTGGATT 59.527 41.667 0.00 0.00 0.00 3.01
353 456 4.037222 GGTATTCATTTTGGGGGTTGGAT 58.963 43.478 0.00 0.00 0.00 3.41
354 457 3.445987 GGTATTCATTTTGGGGGTTGGA 58.554 45.455 0.00 0.00 0.00 3.53
355 458 2.503765 GGGTATTCATTTTGGGGGTTGG 59.496 50.000 0.00 0.00 0.00 3.77
356 459 3.177228 TGGGTATTCATTTTGGGGGTTG 58.823 45.455 0.00 0.00 0.00 3.77
357 460 3.569135 TGGGTATTCATTTTGGGGGTT 57.431 42.857 0.00 0.00 0.00 4.11
358 461 3.013417 TCATGGGTATTCATTTTGGGGGT 59.987 43.478 0.00 0.00 0.00 4.95
359 462 3.652055 TCATGGGTATTCATTTTGGGGG 58.348 45.455 0.00 0.00 0.00 5.40
360 463 5.130809 ACATTCATGGGTATTCATTTTGGGG 59.869 40.000 0.00 0.00 0.00 4.96
361 464 6.237887 ACATTCATGGGTATTCATTTTGGG 57.762 37.500 0.00 0.00 0.00 4.12
362 465 8.010733 AGTACATTCATGGGTATTCATTTTGG 57.989 34.615 0.00 0.00 0.00 3.28
363 466 8.685427 TGAGTACATTCATGGGTATTCATTTTG 58.315 33.333 11.41 0.00 33.18 2.44
364 467 8.821686 TGAGTACATTCATGGGTATTCATTTT 57.178 30.769 11.41 0.00 33.18 1.82
365 468 7.013655 GCTGAGTACATTCATGGGTATTCATTT 59.986 37.037 14.03 0.00 36.21 2.32
366 469 6.488006 GCTGAGTACATTCATGGGTATTCATT 59.512 38.462 14.03 0.00 36.21 2.57
367 470 6.000219 GCTGAGTACATTCATGGGTATTCAT 59.000 40.000 14.03 0.00 36.21 2.57
368 471 5.104569 TGCTGAGTACATTCATGGGTATTCA 60.105 40.000 13.41 13.41 34.95 2.57
369 472 5.368145 TGCTGAGTACATTCATGGGTATTC 58.632 41.667 0.00 1.33 0.00 1.75
370 473 5.372343 TGCTGAGTACATTCATGGGTATT 57.628 39.130 0.00 0.00 0.00 1.89
371 474 5.372343 TTGCTGAGTACATTCATGGGTAT 57.628 39.130 0.00 0.00 0.00 2.73
372 475 4.835284 TTGCTGAGTACATTCATGGGTA 57.165 40.909 0.00 0.00 0.00 3.69
373 476 3.719268 TTGCTGAGTACATTCATGGGT 57.281 42.857 0.00 0.00 0.00 4.51
374 477 3.249320 CGATTGCTGAGTACATTCATGGG 59.751 47.826 0.00 0.00 0.00 4.00
375 478 3.249320 CCGATTGCTGAGTACATTCATGG 59.751 47.826 0.00 0.00 0.00 3.66
376 479 3.873361 ACCGATTGCTGAGTACATTCATG 59.127 43.478 0.00 0.00 0.00 3.07
377 480 4.142609 ACCGATTGCTGAGTACATTCAT 57.857 40.909 0.00 0.00 0.00 2.57
378 481 3.610040 ACCGATTGCTGAGTACATTCA 57.390 42.857 0.00 0.00 0.00 2.57
379 482 7.652105 TCTTTATACCGATTGCTGAGTACATTC 59.348 37.037 0.00 0.00 0.00 2.67
380 483 7.497595 TCTTTATACCGATTGCTGAGTACATT 58.502 34.615 0.00 0.00 0.00 2.71
447 550 0.447801 GTCAATAACTGGCCAGCGTG 59.552 55.000 33.06 23.03 0.00 5.34
457 560 6.351371 CCATACAGTGAGAGTGGTCAATAACT 60.351 42.308 0.00 0.00 0.00 2.24
458 561 5.812642 CCATACAGTGAGAGTGGTCAATAAC 59.187 44.000 0.00 0.00 0.00 1.89
459 562 5.483937 ACCATACAGTGAGAGTGGTCAATAA 59.516 40.000 0.00 0.00 38.78 1.40
462 565 3.239449 ACCATACAGTGAGAGTGGTCAA 58.761 45.455 0.00 0.00 38.78 3.18
463 566 2.889512 ACCATACAGTGAGAGTGGTCA 58.110 47.619 0.00 0.00 38.78 4.02
472 575 4.882842 TTGCTTGTAGACCATACAGTGA 57.117 40.909 0.00 0.00 0.00 3.41
473 576 4.142816 GCTTTGCTTGTAGACCATACAGTG 60.143 45.833 0.00 0.00 0.00 3.66
475 578 4.256920 AGCTTTGCTTGTAGACCATACAG 58.743 43.478 0.00 0.00 33.89 2.74
481 584 3.263261 GGACTAGCTTTGCTTGTAGACC 58.737 50.000 6.63 1.17 43.67 3.85
489 592 1.376037 GGCGTGGACTAGCTTTGCT 60.376 57.895 0.00 0.00 43.41 3.91
490 593 1.026718 ATGGCGTGGACTAGCTTTGC 61.027 55.000 0.00 0.00 0.00 3.68
491 594 0.729116 CATGGCGTGGACTAGCTTTG 59.271 55.000 0.00 0.00 0.00 2.77
492 595 3.159298 CATGGCGTGGACTAGCTTT 57.841 52.632 0.00 0.00 0.00 3.51
504 607 1.028330 AGCATGACAAGACCATGGCG 61.028 55.000 13.04 0.00 41.13 5.69
505 608 0.454600 CAGCATGACAAGACCATGGC 59.545 55.000 13.04 4.70 41.13 4.40
506 609 1.830279 ACAGCATGACAAGACCATGG 58.170 50.000 11.19 11.19 41.13 3.66
509 612 2.358957 GCATACAGCATGACAAGACCA 58.641 47.619 0.00 0.00 44.79 4.02
527 630 6.474427 CGTCTAATTCGGTAGAAAAGTATGCA 59.526 38.462 0.00 0.00 40.15 3.96
545 648 2.741878 CGCAATTCAGGGACCGTCTAAT 60.742 50.000 0.00 0.00 0.00 1.73
548 651 1.079127 CGCAATTCAGGGACCGTCT 60.079 57.895 0.00 0.00 0.00 4.18
567 678 2.357154 GGGATGGTGCCTGAAATACAGT 60.357 50.000 0.00 0.00 44.40 3.55
569 680 1.638070 TGGGATGGTGCCTGAAATACA 59.362 47.619 0.00 0.00 0.00 2.29
574 685 0.776810 TTCTTGGGATGGTGCCTGAA 59.223 50.000 0.00 0.00 0.00 3.02
580 691 0.392998 CCGAGGTTCTTGGGATGGTG 60.393 60.000 0.00 0.00 31.55 4.17
584 695 1.923395 TGGCCGAGGTTCTTGGGAT 60.923 57.895 0.00 0.00 35.62 3.85
589 700 1.827399 ATGTCGTGGCCGAGGTTCTT 61.827 55.000 0.00 0.00 45.26 2.52
590 701 2.227089 GATGTCGTGGCCGAGGTTCT 62.227 60.000 0.00 0.00 45.26 3.01
591 702 1.810030 GATGTCGTGGCCGAGGTTC 60.810 63.158 0.00 0.00 45.26 3.62
593 704 3.771160 GGATGTCGTGGCCGAGGT 61.771 66.667 0.00 0.00 45.26 3.85
599 710 2.511600 CTTCCCGGATGTCGTGGC 60.512 66.667 0.73 0.00 37.11 5.01
602 713 2.264794 GTGCTTCCCGGATGTCGT 59.735 61.111 0.73 0.00 37.11 4.34
604 715 2.109126 GCTGTGCTTCCCGGATGTC 61.109 63.158 0.73 0.00 0.00 3.06
611 722 3.050275 GTGACGGCTGTGCTTCCC 61.050 66.667 0.80 0.00 0.00 3.97
615 726 0.463654 TTCTTTGTGACGGCTGTGCT 60.464 50.000 0.80 0.00 0.00 4.40
620 731 1.757682 TGGTTTTCTTTGTGACGGCT 58.242 45.000 0.00 0.00 0.00 5.52
636 747 4.284490 AGATATGTCCAGCATTCGTATGGT 59.716 41.667 0.43 0.43 42.99 3.55
638 749 5.575995 CAGAGATATGTCCAGCATTCGTATG 59.424 44.000 0.00 0.00 38.94 2.39
639 750 5.244851 ACAGAGATATGTCCAGCATTCGTAT 59.755 40.000 0.00 0.00 38.94 3.06
670 784 8.239314 TCTTACGTATATATACTTTTCAGCCGG 58.761 37.037 18.46 0.00 0.00 6.13
671 785 9.616634 TTCTTACGTATATATACTTTTCAGCCG 57.383 33.333 18.46 6.67 0.00 5.52
684 798 5.410746 CGGTCCAGCTCTTCTTACGTATATA 59.589 44.000 0.00 0.00 0.00 0.86
686 800 3.562973 CGGTCCAGCTCTTCTTACGTATA 59.437 47.826 0.00 0.00 0.00 1.47
687 801 2.358267 CGGTCCAGCTCTTCTTACGTAT 59.642 50.000 0.00 0.00 0.00 3.06
688 802 1.741706 CGGTCCAGCTCTTCTTACGTA 59.258 52.381 0.00 0.00 0.00 3.57
689 803 0.526662 CGGTCCAGCTCTTCTTACGT 59.473 55.000 0.00 0.00 0.00 3.57
690 804 0.809385 TCGGTCCAGCTCTTCTTACG 59.191 55.000 0.00 0.00 0.00 3.18
691 805 2.223852 GGATCGGTCCAGCTCTTCTTAC 60.224 54.545 10.69 0.00 44.42 2.34
692 806 2.032620 GGATCGGTCCAGCTCTTCTTA 58.967 52.381 10.69 0.00 44.42 2.10
693 807 0.827368 GGATCGGTCCAGCTCTTCTT 59.173 55.000 10.69 0.00 44.42 2.52
725 839 5.768980 TCTCACTCCATCAGGATCTTTTT 57.231 39.130 0.00 0.00 44.70 1.94
727 841 5.768980 TTTCTCACTCCATCAGGATCTTT 57.231 39.130 0.00 0.00 44.70 2.52
728 842 5.768980 TTTTCTCACTCCATCAGGATCTT 57.231 39.130 0.00 0.00 44.70 2.40
729 843 5.972327 ATTTTCTCACTCCATCAGGATCT 57.028 39.130 0.00 0.00 44.70 2.75
730 844 6.679884 GCAAATTTTCTCACTCCATCAGGATC 60.680 42.308 0.00 0.00 44.70 3.36
731 845 5.126707 GCAAATTTTCTCACTCCATCAGGAT 59.873 40.000 0.00 0.00 44.70 3.24
732 846 4.460382 GCAAATTTTCTCACTCCATCAGGA 59.540 41.667 0.00 0.00 43.21 3.86
733 847 4.461781 AGCAAATTTTCTCACTCCATCAGG 59.538 41.667 0.00 0.00 0.00 3.86
734 848 5.392811 GGAGCAAATTTTCTCACTCCATCAG 60.393 44.000 17.75 0.00 42.64 2.90
735 849 4.460382 GGAGCAAATTTTCTCACTCCATCA 59.540 41.667 17.75 0.00 42.64 3.07
736 850 4.704057 AGGAGCAAATTTTCTCACTCCATC 59.296 41.667 17.75 1.12 44.98 3.51
737 851 4.461781 CAGGAGCAAATTTTCTCACTCCAT 59.538 41.667 17.75 4.55 44.98 3.41
738 852 3.822735 CAGGAGCAAATTTTCTCACTCCA 59.177 43.478 17.75 0.00 44.98 3.86
739 853 3.192212 CCAGGAGCAAATTTTCTCACTCC 59.808 47.826 17.75 13.85 43.28 3.85
740 854 3.192212 CCCAGGAGCAAATTTTCTCACTC 59.808 47.826 17.75 6.74 0.00 3.51
741 855 3.160269 CCCAGGAGCAAATTTTCTCACT 58.840 45.455 17.75 10.43 0.00 3.41
742 856 2.232208 CCCCAGGAGCAAATTTTCTCAC 59.768 50.000 17.75 8.62 0.00 3.51
743 857 2.528564 CCCCAGGAGCAAATTTTCTCA 58.471 47.619 17.75 0.00 0.00 3.27
744 858 1.205655 GCCCCAGGAGCAAATTTTCTC 59.794 52.381 9.10 9.10 0.00 2.87
745 859 1.269958 GCCCCAGGAGCAAATTTTCT 58.730 50.000 0.00 0.00 0.00 2.52
746 860 0.250234 GGCCCCAGGAGCAAATTTTC 59.750 55.000 0.00 0.00 0.00 2.29
747 861 0.178894 AGGCCCCAGGAGCAAATTTT 60.179 50.000 0.00 0.00 0.00 1.82
748 862 0.615827 GAGGCCCCAGGAGCAAATTT 60.616 55.000 0.00 0.00 0.00 1.82
749 863 1.000866 GAGGCCCCAGGAGCAAATT 59.999 57.895 0.00 0.00 0.00 1.82
750 864 2.220786 CTGAGGCCCCAGGAGCAAAT 62.221 60.000 6.32 0.00 0.00 2.32
751 865 2.858476 TGAGGCCCCAGGAGCAAA 60.858 61.111 0.00 0.00 0.00 3.68
752 866 3.333219 CTGAGGCCCCAGGAGCAA 61.333 66.667 6.32 0.00 0.00 3.91
763 877 0.743097 GATGGTCATTTGGCTGAGGC 59.257 55.000 0.00 0.00 37.82 4.70
764 878 2.022195 CTGATGGTCATTTGGCTGAGG 58.978 52.381 0.00 0.00 0.00 3.86
765 879 2.022195 CCTGATGGTCATTTGGCTGAG 58.978 52.381 0.00 0.00 0.00 3.35
766 880 1.634973 TCCTGATGGTCATTTGGCTGA 59.365 47.619 0.00 0.00 34.23 4.26
767 881 1.747355 GTCCTGATGGTCATTTGGCTG 59.253 52.381 0.00 0.00 34.23 4.85
768 882 1.637553 AGTCCTGATGGTCATTTGGCT 59.362 47.619 0.00 0.00 34.23 4.75
769 883 1.747355 CAGTCCTGATGGTCATTTGGC 59.253 52.381 0.00 0.00 34.23 4.52
770 884 2.025981 TCCAGTCCTGATGGTCATTTGG 60.026 50.000 0.00 0.00 39.01 3.28
771 885 3.354948 TCCAGTCCTGATGGTCATTTG 57.645 47.619 0.00 0.00 39.01 2.32
772 886 3.690460 GTTCCAGTCCTGATGGTCATTT 58.310 45.455 0.00 0.00 39.01 2.32
773 887 2.355108 CGTTCCAGTCCTGATGGTCATT 60.355 50.000 0.00 0.00 39.01 2.57
774 888 1.208052 CGTTCCAGTCCTGATGGTCAT 59.792 52.381 0.00 0.00 39.01 3.06
775 889 0.608130 CGTTCCAGTCCTGATGGTCA 59.392 55.000 0.00 0.00 39.01 4.02
776 890 0.108138 CCGTTCCAGTCCTGATGGTC 60.108 60.000 0.00 0.00 39.01 4.02
777 891 0.836400 ACCGTTCCAGTCCTGATGGT 60.836 55.000 0.00 0.00 39.01 3.55
778 892 0.108138 GACCGTTCCAGTCCTGATGG 60.108 60.000 0.00 0.00 39.33 3.51
779 893 0.608130 TGACCGTTCCAGTCCTGATG 59.392 55.000 0.00 0.00 33.09 3.07
780 894 0.608640 GTGACCGTTCCAGTCCTGAT 59.391 55.000 0.00 0.00 33.09 2.90
833 947 1.978617 CTGAAACCTGCCCGCCAAT 60.979 57.895 0.00 0.00 0.00 3.16
834 948 2.424842 ATCTGAAACCTGCCCGCCAA 62.425 55.000 0.00 0.00 0.00 4.52
846 960 3.973206 TTCTCACGCCCTTATCTGAAA 57.027 42.857 0.00 0.00 0.00 2.69
869 983 3.258228 TCGCGTCTGAATTATCTGCAAA 58.742 40.909 5.77 0.00 0.00 3.68
889 1004 2.852413 CGTCATCACGTCCACATACTTC 59.148 50.000 0.00 0.00 41.42 3.01
967 1084 1.961277 CCGGGTTGTGAGCTGTGTC 60.961 63.158 0.00 0.00 0.00 3.67
1027 1164 4.751093 TTTGCGCCGCCAGATCGA 62.751 61.111 6.63 0.00 0.00 3.59
1037 1174 0.948678 TACAACTTCACCTTTGCGCC 59.051 50.000 4.18 0.00 0.00 6.53
1039 1176 2.602217 GCAGTACAACTTCACCTTTGCG 60.602 50.000 0.00 0.00 0.00 4.85
1049 1186 5.048713 GGATGTTTGCTTAGCAGTACAACTT 60.049 40.000 21.63 14.77 40.61 2.66
1051 1188 4.215399 TGGATGTTTGCTTAGCAGTACAAC 59.785 41.667 21.63 19.22 40.61 3.32
1052 1189 4.393834 TGGATGTTTGCTTAGCAGTACAA 58.606 39.130 21.63 6.64 40.61 2.41
1053 1190 4.014569 TGGATGTTTGCTTAGCAGTACA 57.985 40.909 20.59 20.59 40.61 2.90
1082 1305 4.728534 CAACAAAGACAAAACCGACAAGA 58.271 39.130 0.00 0.00 0.00 3.02
1098 1324 4.332543 CGCTCCAGTTATCATAGCAACAAA 59.667 41.667 0.00 0.00 32.69 2.83
1102 1328 2.806745 GCCGCTCCAGTTATCATAGCAA 60.807 50.000 0.00 0.00 32.69 3.91
1106 1332 2.561419 GGTAGCCGCTCCAGTTATCATA 59.439 50.000 0.00 0.00 0.00 2.15
1108 1334 0.750850 GGTAGCCGCTCCAGTTATCA 59.249 55.000 0.00 0.00 0.00 2.15
1109 1335 0.750850 TGGTAGCCGCTCCAGTTATC 59.249 55.000 0.00 0.00 0.00 1.75
1110 1336 0.753262 CTGGTAGCCGCTCCAGTTAT 59.247 55.000 21.61 0.00 44.19 1.89
1112 1338 2.982130 CTGGTAGCCGCTCCAGTT 59.018 61.111 21.61 0.00 44.19 3.16
1115 1341 2.889606 TTTGCTGGTAGCCGCTCCA 61.890 57.895 9.75 3.75 41.51 3.86
1116 1342 2.046314 TTTGCTGGTAGCCGCTCC 60.046 61.111 9.75 0.00 41.51 4.70
1117 1343 1.234615 TTGTTTGCTGGTAGCCGCTC 61.235 55.000 9.75 1.80 41.51 5.03
1118 1344 0.821711 TTTGTTTGCTGGTAGCCGCT 60.822 50.000 9.75 0.00 41.51 5.52
1119 1345 0.663269 GTTTGTTTGCTGGTAGCCGC 60.663 55.000 0.90 0.90 41.51 6.53
1120 1346 0.951558 AGTTTGTTTGCTGGTAGCCG 59.048 50.000 0.00 0.00 41.51 5.52
1122 1348 3.990318 AAGAGTTTGTTTGCTGGTAGC 57.010 42.857 0.00 0.00 42.82 3.58
1123 1349 5.278022 GGAGAAAGAGTTTGTTTGCTGGTAG 60.278 44.000 0.00 0.00 0.00 3.18
1124 1350 4.578928 GGAGAAAGAGTTTGTTTGCTGGTA 59.421 41.667 0.00 0.00 0.00 3.25
1125 1351 3.381590 GGAGAAAGAGTTTGTTTGCTGGT 59.618 43.478 0.00 0.00 0.00 4.00
1126 1352 3.381272 TGGAGAAAGAGTTTGTTTGCTGG 59.619 43.478 0.00 0.00 0.00 4.85
1127 1353 4.142403 TGTGGAGAAAGAGTTTGTTTGCTG 60.142 41.667 0.00 0.00 0.00 4.41
1128 1354 4.016444 TGTGGAGAAAGAGTTTGTTTGCT 58.984 39.130 0.00 0.00 0.00 3.91
1129 1355 4.370364 TGTGGAGAAAGAGTTTGTTTGC 57.630 40.909 0.00 0.00 0.00 3.68
1130 1356 6.135290 TGATGTGGAGAAAGAGTTTGTTTG 57.865 37.500 0.00 0.00 0.00 2.93
1131 1357 6.966534 ATGATGTGGAGAAAGAGTTTGTTT 57.033 33.333 0.00 0.00 0.00 2.83
1188 1414 7.233389 AGACTAAATGAGAAGCAACTACAGA 57.767 36.000 0.00 0.00 0.00 3.41
1189 1415 7.600375 TGAAGACTAAATGAGAAGCAACTACAG 59.400 37.037 0.00 0.00 0.00 2.74
1193 1419 6.529220 AGTGAAGACTAAATGAGAAGCAACT 58.471 36.000 0.00 0.00 0.00 3.16
1200 1432 7.014711 AGTGTGAAGAGTGAAGACTAAATGAGA 59.985 37.037 0.00 0.00 30.16 3.27
1209 1441 3.198068 TGCAAGTGTGAAGAGTGAAGAC 58.802 45.455 0.00 0.00 0.00 3.01
1210 1442 3.461061 CTGCAAGTGTGAAGAGTGAAGA 58.539 45.455 0.00 0.00 30.87 2.87
1211 1443 2.547211 CCTGCAAGTGTGAAGAGTGAAG 59.453 50.000 0.00 0.00 30.87 3.02
1212 1444 2.092968 ACCTGCAAGTGTGAAGAGTGAA 60.093 45.455 0.00 0.00 30.87 3.18
1213 1445 1.486310 ACCTGCAAGTGTGAAGAGTGA 59.514 47.619 0.00 0.00 30.87 3.41
1214 1446 1.869767 GACCTGCAAGTGTGAAGAGTG 59.130 52.381 0.00 0.00 30.87 3.51
1269 1502 2.228103 CGTAATGATGTAGGCGAGCCTA 59.772 50.000 19.02 19.02 46.14 3.93
1285 1518 6.874134 ACTTCACAAGAAATGAGTAGCGTAAT 59.126 34.615 0.00 0.00 32.35 1.89
1320 1565 3.660111 GCCACCGTGGAGCAACAC 61.660 66.667 22.37 0.00 40.96 3.32
1330 1578 1.920734 TTATCATGGGCTGCCACCGT 61.921 55.000 22.05 2.05 0.00 4.83
1333 1581 1.027357 CTGTTATCATGGGCTGCCAC 58.973 55.000 22.05 10.55 0.00 5.01
1336 1584 1.000607 CATGCTGTTATCATGGGCTGC 60.001 52.381 0.00 0.00 38.06 5.25
1374 1625 1.037030 TGATGGCCCGCTTGAAATCC 61.037 55.000 0.00 0.00 0.00 3.01
1404 1655 0.545646 AGGATCTCAAGGCTTGCCTC 59.454 55.000 22.31 16.38 0.00 4.70
1407 1658 1.382692 GCCAGGATCTCAAGGCTTGC 61.383 60.000 22.31 8.14 43.70 4.01
1447 1698 1.736645 AGTCGACGCCATTCCAACG 60.737 57.895 10.46 0.00 0.00 4.10
1472 1723 3.943479 TTGGTGAATCGCCCCGTCG 62.943 63.158 10.70 0.00 32.22 5.12
1473 1724 2.046700 TTGGTGAATCGCCCCGTC 60.047 61.111 10.70 0.00 32.22 4.79
1474 1725 2.046314 CTTGGTGAATCGCCCCGT 60.046 61.111 10.70 0.00 32.22 5.28
1483 1743 2.839486 CTGAGGTACAGCTTGGTGAA 57.161 50.000 6.83 0.00 39.86 3.18
1592 1852 2.241430 TGGTTCAGAGGAGGTATCTCGA 59.759 50.000 0.00 0.00 40.85 4.04
1645 1905 0.667792 GTCCCTCGCAGTGAGTTGTC 60.668 60.000 10.16 0.00 43.64 3.18
1717 1977 8.975295 GGGAAGTTCTCCTATTAGTAAGTTGTA 58.025 37.037 2.25 0.00 44.68 2.41
1718 1978 7.456902 TGGGAAGTTCTCCTATTAGTAAGTTGT 59.543 37.037 0.00 0.00 44.68 3.32
1738 1998 1.986413 AGCCTACACTGCTGGGAAG 59.014 57.895 0.00 0.00 37.76 3.46
1747 2008 1.879575 TTGGATAGGCAGCCTACACT 58.120 50.000 24.27 8.16 39.10 3.55
1750 2011 3.835395 ACTAGATTGGATAGGCAGCCTAC 59.165 47.826 24.27 16.37 39.10 3.18
1780 2041 5.590259 CGGTGAGATTATTTCCTCCAACAAT 59.410 40.000 0.00 0.00 0.00 2.71
1783 2044 3.877508 CCGGTGAGATTATTTCCTCCAAC 59.122 47.826 0.00 0.00 0.00 3.77
1870 2131 4.501571 GCACTAGTGTATGATTCCGGTGAT 60.502 45.833 23.44 0.00 0.00 3.06
1980 2243 1.483827 GAACCGGTACTAAAGGAGGGG 59.516 57.143 8.00 0.00 0.00 4.79
1981 2244 2.167900 CTGAACCGGTACTAAAGGAGGG 59.832 54.545 8.00 0.00 0.00 4.30
1982 2245 2.418334 GCTGAACCGGTACTAAAGGAGG 60.418 54.545 8.00 0.00 0.00 4.30
1983 2246 2.232941 TGCTGAACCGGTACTAAAGGAG 59.767 50.000 8.00 0.00 0.00 3.69
1984 2247 2.028748 GTGCTGAACCGGTACTAAAGGA 60.029 50.000 8.00 0.00 0.00 3.36
2099 2366 7.454260 ACAAAATAAAACAAAAGCCCACAAA 57.546 28.000 0.00 0.00 0.00 2.83
2285 2552 9.848710 ATTAGATAGCTAGCGGTAATGACTATA 57.151 33.333 9.55 0.00 0.00 1.31
2466 2736 3.759815 TTCTACCTAAGAGGGAGCAGT 57.240 47.619 0.00 0.00 46.42 4.40
2489 2759 7.234355 TCAGGAGAGCTATACATGTTCTATGA 58.766 38.462 2.30 5.81 0.00 2.15
2734 3004 0.792640 CGATGACAGTTGTGCCTCAC 59.207 55.000 0.00 0.00 34.56 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.