Multiple sequence alignment - TraesCS6A01G400100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G400100 chr6A 100.000 3524 0 0 1 3524 609481764 609478241 0.000000e+00 6508.0
1 TraesCS6A01G400100 chr6A 82.676 1039 164 12 1277 2310 609551880 609552907 0.000000e+00 907.0
2 TraesCS6A01G400100 chr6A 86.875 160 19 2 1118 1276 609551610 609551768 1.010000e-40 178.0
3 TraesCS6A01G400100 chr6D 93.674 2213 81 19 481 2679 462636517 462634350 0.000000e+00 3256.0
4 TraesCS6A01G400100 chr6D 82.115 1040 168 14 1277 2310 462690100 462691127 0.000000e+00 874.0
5 TraesCS6A01G400100 chr6D 87.674 576 24 9 2955 3524 320238534 320238000 8.300000e-176 627.0
6 TraesCS6A01G400100 chr6D 97.207 179 4 1 2781 2958 320238740 320238562 5.720000e-78 302.0
7 TraesCS6A01G400100 chr6D 86.957 161 19 2 1117 1276 462689827 462689986 2.790000e-41 180.0
8 TraesCS6A01G400100 chr6D 93.750 80 5 0 2700 2779 462634358 462634279 1.720000e-23 121.0
9 TraesCS6A01G400100 chr6B 93.146 1853 85 16 759 2585 705473225 705475061 0.000000e+00 2680.0
10 TraesCS6A01G400100 chr6B 82.291 1039 168 12 1277 2310 705491234 705492261 0.000000e+00 885.0
11 TraesCS6A01G400100 chr6B 83.333 348 33 20 1 331 221399337 221398998 7.400000e-77 298.0
12 TraesCS6A01G400100 chr6B 87.500 160 18 2 1118 1276 705490966 705491124 2.160000e-42 183.0
13 TraesCS6A01G400100 chr6B 90.299 134 11 2 561 694 705433429 705433560 1.300000e-39 174.0
14 TraesCS6A01G400100 chr6B 83.495 206 9 8 490 694 705472647 705472828 6.050000e-38 169.0
15 TraesCS6A01G400100 chr6B 86.316 95 13 0 1281 1375 184174187 184174093 1.730000e-18 104.0
16 TraesCS6A01G400100 chr7A 98.421 570 9 0 2955 3524 581885639 581885070 0.000000e+00 1003.0
17 TraesCS6A01G400100 chr7A 95.797 571 21 1 2957 3524 672424745 672425315 0.000000e+00 918.0
18 TraesCS6A01G400100 chr7A 82.938 422 46 21 1 403 607524991 607524577 1.200000e-94 357.0
19 TraesCS6A01G400100 chr7A 98.286 175 3 0 2784 2958 581885841 581885667 1.230000e-79 307.0
20 TraesCS6A01G400100 chr7A 96.591 176 6 0 2783 2958 672424540 672424715 3.440000e-75 292.0
21 TraesCS6A01G400100 chr2B 89.062 576 25 11 2955 3524 540433054 540433597 0.000000e+00 680.0
22 TraesCS6A01G400100 chr2B 93.598 328 20 1 3197 3524 503389934 503389608 4.090000e-134 488.0
23 TraesCS6A01G400100 chr2B 93.333 300 20 0 3225 3524 503367563 503367264 8.980000e-121 444.0
24 TraesCS6A01G400100 chr2B 84.848 429 10 9 2979 3392 664319749 664319361 7.140000e-102 381.0
25 TraesCS6A01G400100 chr2B 96.610 177 5 1 2783 2958 503397321 503397145 3.440000e-75 292.0
26 TraesCS6A01G400100 chr2B 95.480 177 7 1 2783 2958 503369566 503369390 7.450000e-72 281.0
27 TraesCS6A01G400100 chr2B 94.972 179 8 1 2781 2958 540432848 540433026 2.680000e-71 279.0
28 TraesCS6A01G400100 chr2B 90.385 208 7 4 2955 3160 503397117 503396921 9.700000e-66 261.0
29 TraesCS6A01G400100 chr2D 94.266 436 14 6 2955 3387 545582369 545581942 0.000000e+00 656.0
30 TraesCS6A01G400100 chr2D 94.886 176 9 0 2783 2958 545582572 545582397 3.470000e-70 276.0
31 TraesCS6A01G400100 chr2D 84.454 238 19 13 176 403 554073732 554073503 5.920000e-53 219.0
32 TraesCS6A01G400100 chr2D 82.390 159 17 10 265 415 24937868 24937713 1.030000e-25 128.0
33 TraesCS6A01G400100 chr3D 82.074 569 69 10 2950 3516 331284748 331285285 4.150000e-124 455.0
34 TraesCS6A01G400100 chr3D 81.324 423 52 19 1 409 182326631 182326222 5.680000e-83 318.0
35 TraesCS6A01G400100 chr1D 86.321 424 44 11 1 412 73314779 73315200 1.930000e-122 449.0
36 TraesCS6A01G400100 chrUn 84.835 455 11 17 2955 3392 17192977 17192564 4.240000e-109 405.0
37 TraesCS6A01G400100 chrUn 96.067 178 6 1 2782 2958 17193182 17193005 4.450000e-74 289.0
38 TraesCS6A01G400100 chrUn 92.381 105 8 0 3420 3524 17188852 17188956 2.190000e-32 150.0
39 TraesCS6A01G400100 chr7B 85.090 389 43 13 1 376 599358829 599359215 1.980000e-102 383.0
40 TraesCS6A01G400100 chr7B 85.924 341 13 9 2955 3292 695169864 695170172 7.290000e-87 331.0
41 TraesCS6A01G400100 chr7B 96.648 179 5 1 2781 2958 695169658 695169836 2.660000e-76 296.0
42 TraesCS6A01G400100 chr7B 76.531 294 61 8 1908 2197 650129034 650128745 1.690000e-33 154.0
43 TraesCS6A01G400100 chr3A 76.882 744 130 23 2783 3519 448325409 448326117 1.980000e-102 383.0
44 TraesCS6A01G400100 chr3A 73.895 475 62 43 581 1019 570111673 570111225 2.210000e-27 134.0
45 TraesCS6A01G400100 chr4D 79.029 577 65 26 2950 3519 81906242 81905715 9.370000e-91 344.0
46 TraesCS6A01G400100 chr4D 82.182 275 30 16 1 262 509262046 509261778 5.920000e-53 219.0
47 TraesCS6A01G400100 chr5D 81.754 422 38 21 1 411 412336236 412335843 2.040000e-82 316.0
48 TraesCS6A01G400100 chr4B 82.124 386 46 18 1 374 468003570 468003944 3.420000e-80 309.0
49 TraesCS6A01G400100 chr4B 87.500 136 12 5 3387 3519 115527462 115527329 6.090000e-33 152.0
50 TraesCS6A01G400100 chr4B 97.561 41 1 0 1257 1297 201147618 201147578 1.760000e-08 71.3
51 TraesCS6A01G400100 chr1A 81.186 388 41 22 36 399 577972317 577971938 2.070000e-72 283.0
52 TraesCS6A01G400100 chr1A 79.861 144 20 8 274 411 444440425 444440285 2.900000e-16 97.1
53 TraesCS6A01G400100 chr5B 85.526 228 20 8 1 223 580278685 580278466 3.540000e-55 226.0
54 TraesCS6A01G400100 chr7D 82.143 168 28 2 1908 2074 582302947 582302781 3.670000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G400100 chr6A 609478241 609481764 3523 True 6508.0 6508 100.0000 1 3524 1 chr6A.!!$R1 3523
1 TraesCS6A01G400100 chr6A 609551610 609552907 1297 False 542.5 907 84.7755 1118 2310 2 chr6A.!!$F1 1192
2 TraesCS6A01G400100 chr6D 462634279 462636517 2238 True 1688.5 3256 93.7120 481 2779 2 chr6D.!!$R2 2298
3 TraesCS6A01G400100 chr6D 462689827 462691127 1300 False 527.0 874 84.5360 1117 2310 2 chr6D.!!$F1 1193
4 TraesCS6A01G400100 chr6D 320238000 320238740 740 True 464.5 627 92.4405 2781 3524 2 chr6D.!!$R1 743
5 TraesCS6A01G400100 chr6B 705472647 705475061 2414 False 1424.5 2680 88.3205 490 2585 2 chr6B.!!$F2 2095
6 TraesCS6A01G400100 chr6B 705490966 705492261 1295 False 534.0 885 84.8955 1118 2310 2 chr6B.!!$F3 1192
7 TraesCS6A01G400100 chr7A 581885070 581885841 771 True 655.0 1003 98.3535 2784 3524 2 chr7A.!!$R2 740
8 TraesCS6A01G400100 chr7A 672424540 672425315 775 False 605.0 918 96.1940 2783 3524 2 chr7A.!!$F1 741
9 TraesCS6A01G400100 chr2B 540432848 540433597 749 False 479.5 680 92.0170 2781 3524 2 chr2B.!!$F1 743
10 TraesCS6A01G400100 chr2B 503367264 503369566 2302 True 362.5 444 94.4065 2783 3524 2 chr2B.!!$R3 741
11 TraesCS6A01G400100 chr2D 545581942 545582572 630 True 466.0 656 94.5760 2783 3387 2 chr2D.!!$R3 604
12 TraesCS6A01G400100 chr3D 331284748 331285285 537 False 455.0 455 82.0740 2950 3516 1 chr3D.!!$F1 566
13 TraesCS6A01G400100 chrUn 17192564 17193182 618 True 347.0 405 90.4510 2782 3392 2 chrUn.!!$R1 610
14 TraesCS6A01G400100 chr7B 695169658 695170172 514 False 313.5 331 91.2860 2781 3292 2 chr7B.!!$F2 511
15 TraesCS6A01G400100 chr3A 448325409 448326117 708 False 383.0 383 76.8820 2783 3519 1 chr3A.!!$F1 736
16 TraesCS6A01G400100 chr4D 81905715 81906242 527 True 344.0 344 79.0290 2950 3519 1 chr4D.!!$R1 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
353 354 0.024619 GAAGTTACGGCGCGCTAAAG 59.975 55.0 32.29 21.09 0.00 1.85 F
366 367 0.096454 GCTAAAGTTTACAGCGGCCG 59.904 55.0 24.05 24.05 0.00 6.13 F
395 396 0.162082 GCGTCACATGTCGCGTAAAA 59.838 50.0 15.03 0.00 41.85 1.52 F
407 408 0.162294 GCGTAAAAACAGACGACCGG 59.838 55.0 0.00 0.00 41.60 5.28 F
408 409 0.162294 CGTAAAAACAGACGACCGGC 59.838 55.0 0.00 0.00 41.60 6.13 F
460 461 0.319555 GGCGTGACAGTGACTTAGCA 60.320 55.0 0.00 0.00 0.00 3.49 F
1170 1556 0.757188 ACATCCTCTGCCTCTACGGG 60.757 60.0 0.00 0.00 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2070 2575 0.033503 TGCGGTAGGACAGGATGAGA 60.034 55.000 0.00 0.00 39.69 3.27 R
2080 2585 1.080093 CGAAGCTGTTGCGGTAGGA 60.080 57.895 0.00 0.00 45.42 2.94 R
2382 2887 0.108138 CCCAGTCCGTGTTCCAGATC 60.108 60.000 0.00 0.00 0.00 2.75 R
2421 2926 2.395690 GCGCTGATCCGTTCGTTG 59.604 61.111 0.00 0.00 0.00 4.10 R
2512 3017 1.007336 CCGACGGTTCAAACTCGGAG 61.007 60.000 14.90 2.83 44.70 4.63 R
2520 3025 2.962786 CGCACACCGACGGTTCAA 60.963 61.111 19.02 0.00 40.02 2.69 R
2703 3208 0.179936 GCCATTCTCCACTCAGAGGG 59.820 60.000 1.53 0.00 34.46 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.979204 TCTCGTTAACGCAGGTGG 57.021 55.556 22.96 8.45 39.60 4.61
18 19 1.290955 TCTCGTTAACGCAGGTGGG 59.709 57.895 22.96 6.89 39.60 4.61
19 20 1.740296 CTCGTTAACGCAGGTGGGG 60.740 63.158 22.96 2.22 39.60 4.96
20 21 2.744709 CGTTAACGCAGGTGGGGG 60.745 66.667 16.05 0.00 0.00 5.40
21 22 2.433004 GTTAACGCAGGTGGGGGT 59.567 61.111 0.00 0.00 35.20 4.95
22 23 1.673337 GTTAACGCAGGTGGGGGTC 60.673 63.158 0.00 0.00 32.97 4.46
23 24 3.242897 TTAACGCAGGTGGGGGTCG 62.243 63.158 0.00 0.00 32.97 4.79
26 27 4.636435 CGCAGGTGGGGGTCGTTT 62.636 66.667 0.00 0.00 0.00 3.60
27 28 2.671963 GCAGGTGGGGGTCGTTTC 60.672 66.667 0.00 0.00 0.00 2.78
28 29 3.157680 CAGGTGGGGGTCGTTTCT 58.842 61.111 0.00 0.00 0.00 2.52
29 30 1.003718 CAGGTGGGGGTCGTTTCTC 60.004 63.158 0.00 0.00 0.00 2.87
30 31 2.047560 GGTGGGGGTCGTTTCTCG 60.048 66.667 0.00 0.00 41.41 4.04
31 32 2.576832 GGTGGGGGTCGTTTCTCGA 61.577 63.158 0.00 0.00 46.83 4.04
40 41 1.505425 TCGTTTCTCGACTCAGACGA 58.495 50.000 0.00 0.00 44.01 4.20
41 42 2.074576 TCGTTTCTCGACTCAGACGAT 58.925 47.619 0.00 0.00 44.01 3.73
42 43 2.483106 TCGTTTCTCGACTCAGACGATT 59.517 45.455 0.00 0.00 44.01 3.34
43 44 2.841329 CGTTTCTCGACTCAGACGATTC 59.159 50.000 0.00 0.00 42.86 2.52
44 45 3.425094 CGTTTCTCGACTCAGACGATTCT 60.425 47.826 0.00 0.00 42.86 2.40
45 46 4.092816 GTTTCTCGACTCAGACGATTCTC 58.907 47.826 0.00 0.00 39.02 2.87
46 47 1.927838 TCTCGACTCAGACGATTCTCG 59.072 52.381 0.00 0.00 46.93 4.04
58 59 2.325761 CGATTCTCGTTGGAAAGACGT 58.674 47.619 0.00 0.00 41.08 4.34
59 60 2.090658 CGATTCTCGTTGGAAAGACGTG 59.909 50.000 0.00 0.00 41.08 4.49
60 61 2.589798 TTCTCGTTGGAAAGACGTGT 57.410 45.000 0.00 0.00 41.08 4.49
61 62 1.847818 TCTCGTTGGAAAGACGTGTG 58.152 50.000 0.00 0.00 41.08 3.82
62 63 0.859232 CTCGTTGGAAAGACGTGTGG 59.141 55.000 0.00 0.00 41.08 4.17
63 64 1.155424 TCGTTGGAAAGACGTGTGGC 61.155 55.000 0.00 0.00 41.08 5.01
64 65 1.157870 CGTTGGAAAGACGTGTGGCT 61.158 55.000 0.00 0.00 35.88 4.75
65 66 0.586802 GTTGGAAAGACGTGTGGCTC 59.413 55.000 0.00 0.00 0.00 4.70
66 67 0.878523 TTGGAAAGACGTGTGGCTCG 60.879 55.000 0.00 0.00 0.00 5.03
67 68 1.006571 GGAAAGACGTGTGGCTCGA 60.007 57.895 0.00 0.00 0.00 4.04
68 69 0.389948 GGAAAGACGTGTGGCTCGAT 60.390 55.000 0.00 0.00 0.00 3.59
69 70 1.135199 GGAAAGACGTGTGGCTCGATA 60.135 52.381 0.00 0.00 0.00 2.92
70 71 1.918609 GAAAGACGTGTGGCTCGATAC 59.081 52.381 0.00 0.00 0.00 2.24
71 72 0.172803 AAGACGTGTGGCTCGATACC 59.827 55.000 0.00 0.00 0.00 2.73
72 73 0.680280 AGACGTGTGGCTCGATACCT 60.680 55.000 0.00 0.00 0.00 3.08
73 74 0.248539 GACGTGTGGCTCGATACCTC 60.249 60.000 0.00 3.47 0.00 3.85
74 75 1.298413 CGTGTGGCTCGATACCTCG 60.298 63.158 6.23 5.12 46.41 4.63
75 76 1.065928 GTGTGGCTCGATACCTCGG 59.934 63.158 6.23 0.00 45.10 4.63
76 77 1.077285 TGTGGCTCGATACCTCGGA 60.077 57.895 6.23 0.00 45.10 4.55
77 78 1.359475 GTGGCTCGATACCTCGGAC 59.641 63.158 6.23 0.00 45.10 4.79
78 79 2.184830 TGGCTCGATACCTCGGACG 61.185 63.158 6.23 0.00 45.10 4.79
79 80 1.890979 GGCTCGATACCTCGGACGA 60.891 63.158 0.00 0.00 45.10 4.20
80 81 1.279238 GCTCGATACCTCGGACGAC 59.721 63.158 0.00 0.00 45.10 4.34
81 82 1.434622 GCTCGATACCTCGGACGACA 61.435 60.000 0.00 0.00 45.10 4.35
82 83 0.304098 CTCGATACCTCGGACGACAC 59.696 60.000 0.00 0.00 45.10 3.67
83 84 1.091771 TCGATACCTCGGACGACACC 61.092 60.000 0.00 0.00 45.10 4.16
84 85 1.371337 CGATACCTCGGACGACACCA 61.371 60.000 0.00 0.00 41.27 4.17
85 86 0.813184 GATACCTCGGACGACACCAA 59.187 55.000 0.00 0.00 0.00 3.67
86 87 0.529378 ATACCTCGGACGACACCAAC 59.471 55.000 0.00 0.00 0.00 3.77
87 88 1.855213 TACCTCGGACGACACCAACG 61.855 60.000 0.00 0.00 0.00 4.10
88 89 2.640989 CTCGGACGACACCAACGA 59.359 61.111 0.00 0.00 34.70 3.85
89 90 1.442184 CTCGGACGACACCAACGAG 60.442 63.158 0.00 0.00 43.85 4.18
90 91 1.893335 TCGGACGACACCAACGAGA 60.893 57.895 0.00 0.00 34.70 4.04
91 92 1.008194 CGGACGACACCAACGAGAA 60.008 57.895 0.00 0.00 34.70 2.87
92 93 0.388134 CGGACGACACCAACGAGAAT 60.388 55.000 0.00 0.00 34.70 2.40
93 94 1.068474 GGACGACACCAACGAGAATG 58.932 55.000 0.00 0.00 34.70 2.67
94 95 1.068474 GACGACACCAACGAGAATGG 58.932 55.000 0.00 0.00 43.84 3.16
102 103 1.660607 CCAACGAGAATGGTGATGACG 59.339 52.381 0.00 0.00 33.08 4.35
103 104 2.606108 CAACGAGAATGGTGATGACGA 58.394 47.619 0.00 0.00 0.00 4.20
104 105 3.190079 CAACGAGAATGGTGATGACGAT 58.810 45.455 0.00 0.00 0.00 3.73
105 106 3.526931 ACGAGAATGGTGATGACGATT 57.473 42.857 0.00 0.00 33.57 3.34
106 107 3.448686 ACGAGAATGGTGATGACGATTC 58.551 45.455 11.19 11.19 43.87 2.52
107 108 2.469147 CGAGAATGGTGATGACGATTCG 59.531 50.000 12.84 4.14 46.50 3.34
108 109 2.797156 GAGAATGGTGATGACGATTCGG 59.203 50.000 12.84 0.00 46.50 4.30
109 110 2.430694 AGAATGGTGATGACGATTCGGA 59.569 45.455 12.84 0.00 46.50 4.55
110 111 2.515926 ATGGTGATGACGATTCGGAG 57.484 50.000 11.29 0.00 0.00 4.63
111 112 1.182667 TGGTGATGACGATTCGGAGT 58.817 50.000 11.29 0.00 0.00 3.85
112 113 2.371306 TGGTGATGACGATTCGGAGTA 58.629 47.619 11.29 0.00 0.00 2.59
113 114 2.357952 TGGTGATGACGATTCGGAGTAG 59.642 50.000 11.29 0.00 0.00 2.57
114 115 2.287668 GGTGATGACGATTCGGAGTAGG 60.288 54.545 11.29 0.00 0.00 3.18
115 116 2.358267 GTGATGACGATTCGGAGTAGGT 59.642 50.000 11.29 0.00 0.00 3.08
116 117 3.021695 TGATGACGATTCGGAGTAGGTT 58.978 45.455 11.29 0.00 0.00 3.50
117 118 3.066342 TGATGACGATTCGGAGTAGGTTC 59.934 47.826 11.29 0.00 0.00 3.62
118 119 2.719739 TGACGATTCGGAGTAGGTTCT 58.280 47.619 11.29 0.00 0.00 3.01
119 120 3.877559 TGACGATTCGGAGTAGGTTCTA 58.122 45.455 11.29 0.00 0.00 2.10
120 121 3.875727 TGACGATTCGGAGTAGGTTCTAG 59.124 47.826 11.29 0.00 0.00 2.43
121 122 3.876320 GACGATTCGGAGTAGGTTCTAGT 59.124 47.826 11.29 0.00 0.00 2.57
122 123 4.268359 ACGATTCGGAGTAGGTTCTAGTT 58.732 43.478 11.29 0.00 0.00 2.24
123 124 4.096081 ACGATTCGGAGTAGGTTCTAGTTG 59.904 45.833 11.29 0.00 0.00 3.16
124 125 3.863142 TTCGGAGTAGGTTCTAGTTGC 57.137 47.619 0.00 0.00 0.00 4.17
125 126 2.799017 TCGGAGTAGGTTCTAGTTGCA 58.201 47.619 0.00 0.00 0.00 4.08
126 127 2.490903 TCGGAGTAGGTTCTAGTTGCAC 59.509 50.000 0.00 0.00 0.00 4.57
127 128 2.416972 CGGAGTAGGTTCTAGTTGCACC 60.417 54.545 0.00 0.00 31.89 5.01
128 129 2.416972 GGAGTAGGTTCTAGTTGCACCG 60.417 54.545 0.00 0.00 37.05 4.94
129 130 2.230750 GAGTAGGTTCTAGTTGCACCGT 59.769 50.000 0.00 0.00 37.05 4.83
130 131 3.424703 AGTAGGTTCTAGTTGCACCGTA 58.575 45.455 0.00 0.00 37.05 4.02
131 132 3.442977 AGTAGGTTCTAGTTGCACCGTAG 59.557 47.826 0.00 0.00 37.05 3.51
132 133 2.245582 AGGTTCTAGTTGCACCGTAGT 58.754 47.619 0.00 0.00 37.05 2.73
133 134 2.631545 AGGTTCTAGTTGCACCGTAGTT 59.368 45.455 0.00 0.00 37.05 2.24
134 135 3.070590 AGGTTCTAGTTGCACCGTAGTTT 59.929 43.478 0.00 0.00 37.05 2.66
135 136 3.811497 GGTTCTAGTTGCACCGTAGTTTT 59.189 43.478 0.00 0.00 0.00 2.43
136 137 4.990426 GGTTCTAGTTGCACCGTAGTTTTA 59.010 41.667 0.00 0.00 0.00 1.52
137 138 5.640783 GGTTCTAGTTGCACCGTAGTTTTAT 59.359 40.000 0.00 0.00 0.00 1.40
138 139 6.183360 GGTTCTAGTTGCACCGTAGTTTTATC 60.183 42.308 0.00 0.00 0.00 1.75
139 140 6.276832 TCTAGTTGCACCGTAGTTTTATCT 57.723 37.500 0.00 0.00 0.00 1.98
140 141 7.395190 TCTAGTTGCACCGTAGTTTTATCTA 57.605 36.000 0.00 0.00 0.00 1.98
141 142 7.478322 TCTAGTTGCACCGTAGTTTTATCTAG 58.522 38.462 0.00 0.00 0.00 2.43
142 143 6.034161 AGTTGCACCGTAGTTTTATCTAGT 57.966 37.500 0.00 0.00 0.00 2.57
143 144 6.461640 AGTTGCACCGTAGTTTTATCTAGTT 58.538 36.000 0.00 0.00 0.00 2.24
144 145 7.605449 AGTTGCACCGTAGTTTTATCTAGTTA 58.395 34.615 0.00 0.00 0.00 2.24
145 146 8.255905 AGTTGCACCGTAGTTTTATCTAGTTAT 58.744 33.333 0.00 0.00 0.00 1.89
146 147 9.520204 GTTGCACCGTAGTTTTATCTAGTTATA 57.480 33.333 0.00 0.00 0.00 0.98
171 172 8.836268 ATTGTAGTAGTTTTTATCGTGTTGGA 57.164 30.769 0.00 0.00 0.00 3.53
172 173 7.642071 TGTAGTAGTTTTTATCGTGTTGGAC 57.358 36.000 0.00 0.00 0.00 4.02
173 174 7.436118 TGTAGTAGTTTTTATCGTGTTGGACT 58.564 34.615 0.00 0.00 0.00 3.85
174 175 7.596248 TGTAGTAGTTTTTATCGTGTTGGACTC 59.404 37.037 0.00 0.00 0.00 3.36
175 176 4.985044 AGTTTTTATCGTGTTGGACTCG 57.015 40.909 0.00 0.00 36.55 4.18
176 177 4.374399 AGTTTTTATCGTGTTGGACTCGT 58.626 39.130 3.04 0.00 36.59 4.18
177 178 4.812626 AGTTTTTATCGTGTTGGACTCGTT 59.187 37.500 3.04 0.00 36.59 3.85
178 179 5.295045 AGTTTTTATCGTGTTGGACTCGTTT 59.705 36.000 3.04 0.00 36.59 3.60
179 180 5.738118 TTTTATCGTGTTGGACTCGTTTT 57.262 34.783 3.04 0.00 36.59 2.43
180 181 5.738118 TTTATCGTGTTGGACTCGTTTTT 57.262 34.783 3.04 0.00 36.59 1.94
203 204 7.792374 TTTTCTATCTATGCTGTGATGAACC 57.208 36.000 0.00 0.00 0.00 3.62
204 205 6.484364 TTCTATCTATGCTGTGATGAACCA 57.516 37.500 0.00 0.00 0.00 3.67
205 206 6.676990 TCTATCTATGCTGTGATGAACCAT 57.323 37.500 0.00 0.00 0.00 3.55
206 207 6.461640 TCTATCTATGCTGTGATGAACCATG 58.538 40.000 0.00 0.00 0.00 3.66
207 208 4.492494 TCTATGCTGTGATGAACCATGT 57.508 40.909 0.00 0.00 0.00 3.21
208 209 5.612725 TCTATGCTGTGATGAACCATGTA 57.387 39.130 0.00 0.00 0.00 2.29
209 210 5.359756 TCTATGCTGTGATGAACCATGTAC 58.640 41.667 0.00 0.00 0.00 2.90
210 211 2.345876 TGCTGTGATGAACCATGTACG 58.654 47.619 0.00 0.00 0.00 3.67
211 212 1.062587 GCTGTGATGAACCATGTACGC 59.937 52.381 0.00 0.00 0.00 4.42
212 213 2.345876 CTGTGATGAACCATGTACGCA 58.654 47.619 0.00 0.00 0.00 5.24
213 214 2.938451 CTGTGATGAACCATGTACGCAT 59.062 45.455 0.00 0.00 35.32 4.73
214 215 3.342719 TGTGATGAACCATGTACGCATT 58.657 40.909 0.00 0.00 31.99 3.56
215 216 3.126686 TGTGATGAACCATGTACGCATTG 59.873 43.478 0.00 0.00 31.99 2.82
216 217 3.126858 GTGATGAACCATGTACGCATTGT 59.873 43.478 0.00 0.00 33.07 2.71
217 218 3.126686 TGATGAACCATGTACGCATTGTG 59.873 43.478 0.00 0.00 32.22 3.33
218 219 2.772287 TGAACCATGTACGCATTGTGA 58.228 42.857 3.82 0.00 32.22 3.58
219 220 3.142174 TGAACCATGTACGCATTGTGAA 58.858 40.909 3.82 0.00 32.22 3.18
220 221 3.565902 TGAACCATGTACGCATTGTGAAA 59.434 39.130 3.82 0.00 32.22 2.69
221 222 4.217334 TGAACCATGTACGCATTGTGAAAT 59.783 37.500 3.82 0.00 32.22 2.17
222 223 5.412904 TGAACCATGTACGCATTGTGAAATA 59.587 36.000 3.82 0.00 32.22 1.40
223 224 6.094742 TGAACCATGTACGCATTGTGAAATAT 59.905 34.615 3.82 0.00 32.22 1.28
224 225 6.060028 ACCATGTACGCATTGTGAAATATC 57.940 37.500 3.82 0.00 30.88 1.63
225 226 5.822519 ACCATGTACGCATTGTGAAATATCT 59.177 36.000 3.82 0.00 30.88 1.98
226 227 6.989759 ACCATGTACGCATTGTGAAATATCTA 59.010 34.615 3.82 0.00 30.88 1.98
227 228 7.661437 ACCATGTACGCATTGTGAAATATCTAT 59.339 33.333 3.82 0.00 30.88 1.98
228 229 9.150348 CCATGTACGCATTGTGAAATATCTATA 57.850 33.333 3.82 0.00 31.99 1.31
234 235 9.803315 ACGCATTGTGAAATATCTATATATCGT 57.197 29.630 3.82 0.00 0.00 3.73
297 298 8.780846 TTGTTCGGAGTACATATATTGTTTGT 57.219 30.769 0.00 0.00 39.87 2.83
298 299 8.192068 TGTTCGGAGTACATATATTGTTTGTG 57.808 34.615 0.00 0.00 39.87 3.33
299 300 6.838198 TCGGAGTACATATATTGTTTGTGC 57.162 37.500 0.00 0.00 39.87 4.57
300 301 6.342111 TCGGAGTACATATATTGTTTGTGCA 58.658 36.000 0.00 0.00 39.87 4.57
301 302 6.819146 TCGGAGTACATATATTGTTTGTGCAA 59.181 34.615 0.00 0.00 39.87 4.08
302 303 7.011016 TCGGAGTACATATATTGTTTGTGCAAG 59.989 37.037 0.00 0.00 39.87 4.01
303 304 7.011016 CGGAGTACATATATTGTTTGTGCAAGA 59.989 37.037 0.00 0.00 39.87 3.02
304 305 8.122952 GGAGTACATATATTGTTTGTGCAAGAC 58.877 37.037 0.00 0.00 39.87 3.01
305 306 7.684670 AGTACATATATTGTTTGTGCAAGACG 58.315 34.615 0.00 0.00 39.87 4.18
306 307 5.331902 ACATATATTGTTTGTGCAAGACGC 58.668 37.500 0.00 0.00 36.65 5.19
307 308 2.308347 TATTGTTTGTGCAAGACGCG 57.692 45.000 3.53 3.53 46.97 6.01
308 309 9.961811 TACATATATTGTTTGTGCAAGACGCGC 62.962 40.741 5.73 0.00 44.57 6.86
325 326 3.055045 CGCGTCGCATTTTTGCAG 58.945 55.556 18.75 0.00 34.41 4.41
326 327 2.765150 GCGTCGCATTTTTGCAGC 59.235 55.556 13.44 0.00 34.41 5.25
330 331 4.539152 CGCATTTTTGCAGCGTCT 57.461 50.000 8.94 0.00 45.82 4.18
331 332 2.056388 CGCATTTTTGCAGCGTCTG 58.944 52.632 8.94 2.92 45.82 3.51
332 333 0.661187 CGCATTTTTGCAGCGTCTGT 60.661 50.000 8.94 0.00 45.82 3.41
333 334 1.490621 GCATTTTTGCAGCGTCTGTT 58.509 45.000 8.32 0.00 33.43 3.16
334 335 1.190763 GCATTTTTGCAGCGTCTGTTG 59.809 47.619 8.32 0.00 33.43 3.33
335 336 2.730069 CATTTTTGCAGCGTCTGTTGA 58.270 42.857 8.32 0.00 33.43 3.18
336 337 2.929531 TTTTTGCAGCGTCTGTTGAA 57.070 40.000 8.32 0.35 33.43 2.69
337 338 2.473530 TTTTGCAGCGTCTGTTGAAG 57.526 45.000 8.32 0.00 33.43 3.02
338 339 1.378531 TTTGCAGCGTCTGTTGAAGT 58.621 45.000 8.32 0.00 33.43 3.01
339 340 1.378531 TTGCAGCGTCTGTTGAAGTT 58.621 45.000 8.32 0.00 33.43 2.66
340 341 2.232756 TGCAGCGTCTGTTGAAGTTA 57.767 45.000 8.32 0.00 33.43 2.24
341 342 1.864711 TGCAGCGTCTGTTGAAGTTAC 59.135 47.619 8.32 0.00 33.43 2.50
342 343 1.136611 GCAGCGTCTGTTGAAGTTACG 60.137 52.381 8.32 0.00 33.43 3.18
343 344 1.455786 CAGCGTCTGTTGAAGTTACGG 59.544 52.381 0.00 0.00 34.29 4.02
344 345 0.163146 GCGTCTGTTGAAGTTACGGC 59.837 55.000 0.00 0.00 34.29 5.68
345 346 0.433492 CGTCTGTTGAAGTTACGGCG 59.567 55.000 4.80 4.80 0.00 6.46
346 347 0.163146 GTCTGTTGAAGTTACGGCGC 59.837 55.000 6.90 0.00 0.00 6.53
347 348 1.129809 CTGTTGAAGTTACGGCGCG 59.870 57.895 6.90 0.00 0.00 6.86
348 349 2.202133 GTTGAAGTTACGGCGCGC 60.202 61.111 25.94 25.94 0.00 6.86
349 350 2.356553 TTGAAGTTACGGCGCGCT 60.357 55.556 32.29 15.35 0.00 5.92
350 351 1.080637 TTGAAGTTACGGCGCGCTA 60.081 52.632 32.29 14.12 0.00 4.26
351 352 0.666880 TTGAAGTTACGGCGCGCTAA 60.667 50.000 32.29 19.67 0.00 3.09
352 353 0.666880 TGAAGTTACGGCGCGCTAAA 60.667 50.000 32.29 19.16 0.00 1.85
353 354 0.024619 GAAGTTACGGCGCGCTAAAG 59.975 55.000 32.29 21.09 0.00 1.85
354 355 0.668401 AAGTTACGGCGCGCTAAAGT 60.668 50.000 32.29 25.26 0.00 2.66
355 356 0.668401 AGTTACGGCGCGCTAAAGTT 60.668 50.000 32.29 10.43 0.00 2.66
356 357 0.164432 GTTACGGCGCGCTAAAGTTT 59.836 50.000 32.29 9.71 0.00 2.66
357 358 1.389784 GTTACGGCGCGCTAAAGTTTA 59.610 47.619 32.29 13.72 0.00 2.01
358 359 0.991344 TACGGCGCGCTAAAGTTTAC 59.009 50.000 32.29 9.74 0.00 2.01
359 360 0.945265 ACGGCGCGCTAAAGTTTACA 60.945 50.000 32.29 0.00 0.00 2.41
360 361 0.247145 CGGCGCGCTAAAGTTTACAG 60.247 55.000 32.29 3.57 0.00 2.74
361 362 0.520619 GGCGCGCTAAAGTTTACAGC 60.521 55.000 32.29 5.07 0.00 4.40
365 366 3.990546 GCTAAAGTTTACAGCGGCC 57.009 52.632 0.00 0.00 0.00 6.13
366 367 0.096454 GCTAAAGTTTACAGCGGCCG 59.904 55.000 24.05 24.05 0.00 6.13
367 368 0.096454 CTAAAGTTTACAGCGGCCGC 59.904 55.000 42.34 42.34 42.33 6.53
384 385 2.267006 CTGGAGCCAGCGTCACAT 59.733 61.111 3.18 0.00 37.24 3.21
385 386 2.046988 TGGAGCCAGCGTCACATG 60.047 61.111 0.00 0.00 0.00 3.21
386 387 2.046892 GGAGCCAGCGTCACATGT 60.047 61.111 0.00 0.00 0.00 3.21
387 388 2.103042 GGAGCCAGCGTCACATGTC 61.103 63.158 0.00 0.00 0.00 3.06
388 389 2.433145 AGCCAGCGTCACATGTCG 60.433 61.111 0.00 0.00 0.00 4.35
393 394 3.454574 GCGTCACATGTCGCGTAA 58.545 55.556 15.03 0.00 41.85 3.18
394 395 1.776580 GCGTCACATGTCGCGTAAA 59.223 52.632 15.03 0.00 41.85 2.01
395 396 0.162082 GCGTCACATGTCGCGTAAAA 59.838 50.000 15.03 0.00 41.85 1.52
396 397 1.397441 GCGTCACATGTCGCGTAAAAA 60.397 47.619 15.03 0.00 41.85 1.94
397 398 2.219355 CGTCACATGTCGCGTAAAAAC 58.781 47.619 5.77 0.00 0.00 2.43
398 399 2.347753 CGTCACATGTCGCGTAAAAACA 60.348 45.455 5.77 2.33 0.00 2.83
399 400 3.215244 GTCACATGTCGCGTAAAAACAG 58.785 45.455 5.77 0.00 0.00 3.16
400 401 3.060138 GTCACATGTCGCGTAAAAACAGA 60.060 43.478 5.77 0.00 0.00 3.41
401 402 3.060138 TCACATGTCGCGTAAAAACAGAC 60.060 43.478 5.77 0.00 0.00 3.51
402 403 2.097104 ACATGTCGCGTAAAAACAGACG 60.097 45.455 5.77 0.00 41.97 4.18
403 404 1.837648 TGTCGCGTAAAAACAGACGA 58.162 45.000 5.77 0.00 41.60 4.20
404 405 2.188124 GTCGCGTAAAAACAGACGAC 57.812 50.000 5.77 0.00 41.60 4.34
405 406 1.130955 TCGCGTAAAAACAGACGACC 58.869 50.000 5.77 0.00 41.60 4.79
406 407 0.179292 CGCGTAAAAACAGACGACCG 60.179 55.000 0.00 0.00 41.60 4.79
407 408 0.162294 GCGTAAAAACAGACGACCGG 59.838 55.000 0.00 0.00 41.60 5.28
408 409 0.162294 CGTAAAAACAGACGACCGGC 59.838 55.000 0.00 0.00 41.60 6.13
410 411 1.559149 TAAAAACAGACGACCGGCGC 61.559 55.000 16.48 0.00 46.04 6.53
420 421 4.903010 ACCGGCGCGTTGTGTCTT 62.903 61.111 8.43 0.00 0.00 3.01
421 422 4.368808 CCGGCGCGTTGTGTCTTG 62.369 66.667 8.43 0.00 0.00 3.02
422 423 4.368808 CGGCGCGTTGTGTCTTGG 62.369 66.667 8.43 0.00 0.00 3.61
423 424 4.025401 GGCGCGTTGTGTCTTGGG 62.025 66.667 8.43 0.00 0.00 4.12
424 425 4.683334 GCGCGTTGTGTCTTGGGC 62.683 66.667 8.43 0.00 0.00 5.36
425 426 4.368808 CGCGTTGTGTCTTGGGCG 62.369 66.667 0.00 0.00 37.56 6.13
426 427 4.025401 GCGTTGTGTCTTGGGCGG 62.025 66.667 0.00 0.00 0.00 6.13
427 428 3.353836 CGTTGTGTCTTGGGCGGG 61.354 66.667 0.00 0.00 0.00 6.13
428 429 2.112297 GTTGTGTCTTGGGCGGGA 59.888 61.111 0.00 0.00 0.00 5.14
429 430 1.527380 GTTGTGTCTTGGGCGGGAA 60.527 57.895 0.00 0.00 0.00 3.97
430 431 1.228124 TTGTGTCTTGGGCGGGAAG 60.228 57.895 0.00 0.00 0.00 3.46
431 432 1.701031 TTGTGTCTTGGGCGGGAAGA 61.701 55.000 0.00 0.00 0.00 2.87
432 433 1.299976 GTGTCTTGGGCGGGAAGAT 59.700 57.895 0.00 0.00 32.18 2.40
433 434 1.026718 GTGTCTTGGGCGGGAAGATG 61.027 60.000 0.00 0.00 32.18 2.90
434 435 2.115291 GTCTTGGGCGGGAAGATGC 61.115 63.158 0.00 0.00 32.18 3.91
435 436 2.273449 CTTGGGCGGGAAGATGCT 59.727 61.111 0.00 0.00 0.00 3.79
436 437 1.821332 CTTGGGCGGGAAGATGCTC 60.821 63.158 0.00 0.00 0.00 4.26
437 438 2.262774 CTTGGGCGGGAAGATGCTCT 62.263 60.000 0.00 0.00 31.17 4.09
438 439 1.852157 TTGGGCGGGAAGATGCTCTT 61.852 55.000 0.00 0.00 39.87 2.85
444 445 3.711348 GAAGATGCTCTTCCGGCG 58.289 61.111 0.00 0.00 45.34 6.46
445 446 1.153549 GAAGATGCTCTTCCGGCGT 60.154 57.895 6.01 0.00 45.34 5.68
446 447 1.424493 GAAGATGCTCTTCCGGCGTG 61.424 60.000 6.01 0.00 45.34 5.34
447 448 1.888436 AAGATGCTCTTCCGGCGTGA 61.888 55.000 6.01 0.00 28.99 4.35
448 449 2.125512 ATGCTCTTCCGGCGTGAC 60.126 61.111 6.01 0.00 0.00 3.67
449 450 2.835701 GATGCTCTTCCGGCGTGACA 62.836 60.000 6.01 3.40 0.00 3.58
450 451 2.811317 GCTCTTCCGGCGTGACAG 60.811 66.667 6.01 3.05 0.00 3.51
451 452 2.651361 CTCTTCCGGCGTGACAGT 59.349 61.111 6.01 0.00 0.00 3.55
452 453 1.734477 CTCTTCCGGCGTGACAGTG 60.734 63.158 6.01 0.00 0.00 3.66
453 454 2.142357 CTCTTCCGGCGTGACAGTGA 62.142 60.000 6.01 0.00 0.00 3.41
454 455 2.022129 CTTCCGGCGTGACAGTGAC 61.022 63.158 6.01 0.00 0.00 3.67
455 456 2.421877 CTTCCGGCGTGACAGTGACT 62.422 60.000 6.01 0.00 0.00 3.41
456 457 2.023414 TTCCGGCGTGACAGTGACTT 62.023 55.000 6.01 0.00 0.00 3.01
457 458 1.174078 TCCGGCGTGACAGTGACTTA 61.174 55.000 6.01 0.00 0.00 2.24
458 459 0.732880 CCGGCGTGACAGTGACTTAG 60.733 60.000 6.01 0.00 0.00 2.18
459 460 1.344942 CGGCGTGACAGTGACTTAGC 61.345 60.000 0.00 0.00 0.00 3.09
460 461 0.319555 GGCGTGACAGTGACTTAGCA 60.320 55.000 0.00 0.00 0.00 3.49
461 462 1.673033 GGCGTGACAGTGACTTAGCAT 60.673 52.381 0.00 0.00 0.00 3.79
462 463 2.069273 GCGTGACAGTGACTTAGCATT 58.931 47.619 0.00 0.00 0.00 3.56
463 464 2.480419 GCGTGACAGTGACTTAGCATTT 59.520 45.455 0.00 0.00 0.00 2.32
464 465 3.058914 GCGTGACAGTGACTTAGCATTTT 60.059 43.478 0.00 0.00 0.00 1.82
465 466 4.554723 GCGTGACAGTGACTTAGCATTTTT 60.555 41.667 0.00 0.00 0.00 1.94
466 467 5.333798 GCGTGACAGTGACTTAGCATTTTTA 60.334 40.000 0.00 0.00 0.00 1.52
467 468 6.071463 CGTGACAGTGACTTAGCATTTTTAC 58.929 40.000 0.00 0.00 0.00 2.01
468 469 6.071463 GTGACAGTGACTTAGCATTTTTACG 58.929 40.000 0.00 0.00 0.00 3.18
469 470 5.178623 TGACAGTGACTTAGCATTTTTACGG 59.821 40.000 0.00 0.00 0.00 4.02
470 471 4.454504 ACAGTGACTTAGCATTTTTACGGG 59.545 41.667 0.00 0.00 0.00 5.28
471 472 4.007659 AGTGACTTAGCATTTTTACGGGG 58.992 43.478 0.00 0.00 0.00 5.73
472 473 3.128068 GTGACTTAGCATTTTTACGGGGG 59.872 47.826 0.00 0.00 0.00 5.40
473 474 3.009253 TGACTTAGCATTTTTACGGGGGA 59.991 43.478 0.00 0.00 0.00 4.81
474 475 3.617284 ACTTAGCATTTTTACGGGGGAG 58.383 45.455 0.00 0.00 0.00 4.30
475 476 2.721425 TAGCATTTTTACGGGGGAGG 57.279 50.000 0.00 0.00 0.00 4.30
476 477 0.996583 AGCATTTTTACGGGGGAGGA 59.003 50.000 0.00 0.00 0.00 3.71
477 478 1.100510 GCATTTTTACGGGGGAGGAC 58.899 55.000 0.00 0.00 0.00 3.85
478 479 1.614850 GCATTTTTACGGGGGAGGACA 60.615 52.381 0.00 0.00 0.00 4.02
479 480 2.948600 GCATTTTTACGGGGGAGGACAT 60.949 50.000 0.00 0.00 0.00 3.06
525 526 1.369091 AATCCGCGTCACTTCCATGC 61.369 55.000 4.92 0.00 0.00 4.06
540 541 0.835941 CATGCTCCTCTACCTGCCTT 59.164 55.000 0.00 0.00 0.00 4.35
541 542 2.042464 CATGCTCCTCTACCTGCCTTA 58.958 52.381 0.00 0.00 0.00 2.69
542 543 1.486211 TGCTCCTCTACCTGCCTTAC 58.514 55.000 0.00 0.00 0.00 2.34
544 545 1.965318 GCTCCTCTACCTGCCTTACCA 60.965 57.143 0.00 0.00 0.00 3.25
545 546 2.467880 CTCCTCTACCTGCCTTACCAA 58.532 52.381 0.00 0.00 0.00 3.67
548 549 2.168728 CCTCTACCTGCCTTACCAACTC 59.831 54.545 0.00 0.00 0.00 3.01
549 550 3.100671 CTCTACCTGCCTTACCAACTCT 58.899 50.000 0.00 0.00 0.00 3.24
550 551 3.515901 CTCTACCTGCCTTACCAACTCTT 59.484 47.826 0.00 0.00 0.00 2.85
551 552 2.568623 ACCTGCCTTACCAACTCTTG 57.431 50.000 0.00 0.00 0.00 3.02
552 553 1.774856 ACCTGCCTTACCAACTCTTGT 59.225 47.619 0.00 0.00 0.00 3.16
553 554 2.174854 ACCTGCCTTACCAACTCTTGTT 59.825 45.455 0.00 0.00 36.75 2.83
554 555 3.222603 CCTGCCTTACCAACTCTTGTTT 58.777 45.455 0.00 0.00 33.52 2.83
555 556 3.253432 CCTGCCTTACCAACTCTTGTTTC 59.747 47.826 0.00 0.00 33.52 2.78
556 557 4.137543 CTGCCTTACCAACTCTTGTTTCT 58.862 43.478 0.00 0.00 33.52 2.52
557 558 5.298989 TGCCTTACCAACTCTTGTTTCTA 57.701 39.130 0.00 0.00 33.52 2.10
558 559 5.061179 TGCCTTACCAACTCTTGTTTCTAC 58.939 41.667 0.00 0.00 33.52 2.59
559 560 4.151867 GCCTTACCAACTCTTGTTTCTACG 59.848 45.833 0.00 0.00 33.52 3.51
560 561 5.535333 CCTTACCAACTCTTGTTTCTACGA 58.465 41.667 0.00 0.00 33.52 3.43
569 570 6.326375 ACTCTTGTTTCTACGATCTGATCAC 58.674 40.000 17.19 7.39 0.00 3.06
571 572 6.556212 TCTTGTTTCTACGATCTGATCACTC 58.444 40.000 17.19 0.00 0.00 3.51
579 580 3.051327 CGATCTGATCACTCACATGAGC 58.949 50.000 17.19 0.00 45.79 4.26
597 600 1.069049 AGCCATGCCTTTGTGACAAAC 59.931 47.619 6.66 0.00 0.00 2.93
598 601 1.202510 GCCATGCCTTTGTGACAAACA 60.203 47.619 6.66 5.26 36.85 2.83
643 646 4.697756 CAACCTCCTGCGCCGGAA 62.698 66.667 21.53 5.97 31.44 4.30
644 647 3.717294 AACCTCCTGCGCCGGAAT 61.717 61.111 21.53 10.05 31.44 3.01
645 648 3.682292 AACCTCCTGCGCCGGAATC 62.682 63.158 21.53 0.00 31.44 2.52
646 649 4.918201 CCTCCTGCGCCGGAATCC 62.918 72.222 21.53 0.00 31.44 3.01
647 650 4.161295 CTCCTGCGCCGGAATCCA 62.161 66.667 21.53 0.00 31.44 3.41
722 725 4.908687 TTCCGCCATGCCCGATCG 62.909 66.667 8.51 8.51 0.00 3.69
843 1199 4.214545 GGCTGTATATATATCGAGAGCGCT 59.785 45.833 11.27 11.27 37.46 5.92
882 1238 1.871676 CCAGACCGATCGATCTCGTAA 59.128 52.381 22.43 0.00 40.80 3.18
984 1370 1.022451 GTCGGAGTCGAGCAGAGTCT 61.022 60.000 14.14 0.00 46.91 3.24
985 1371 1.427419 CGGAGTCGAGCAGAGTCTG 59.573 63.158 16.21 16.21 46.16 3.51
986 1372 1.302383 CGGAGTCGAGCAGAGTCTGT 61.302 60.000 21.06 8.33 46.04 3.41
987 1373 0.885196 GGAGTCGAGCAGAGTCTGTT 59.115 55.000 21.06 15.79 46.16 3.16
1039 1425 3.241530 TGCTGGTGAAGAGGCCGT 61.242 61.111 0.00 0.00 0.00 5.68
1170 1556 0.757188 ACATCCTCTGCCTCTACGGG 60.757 60.000 0.00 0.00 0.00 5.28
1227 1613 4.749310 AACCTGCAGCTCTCCGCG 62.749 66.667 8.66 0.00 45.59 6.46
1386 1891 1.456196 GGATCATCCTCGCCGTCTCA 61.456 60.000 0.00 0.00 32.53 3.27
1848 2353 2.093181 GGTGTGGTACATGATGGTGCTA 60.093 50.000 0.00 0.00 44.52 3.49
2080 2585 1.530771 GCCATGGCTCTCATCCTGT 59.469 57.895 29.98 0.00 38.26 4.00
2512 3017 2.035442 GGTGACCTCAAGGAAGCGC 61.035 63.158 0.00 0.00 38.94 5.92
2585 3090 2.684374 TGATTCTGGTGCGGAATTCATG 59.316 45.455 7.93 0.00 39.27 3.07
2597 3102 1.999735 GAATTCATGGAGTGCGACGAA 59.000 47.619 0.00 0.00 0.00 3.85
2612 3117 1.355916 CGAACTCTCGGTCGATCCC 59.644 63.158 0.00 0.00 41.57 3.85
2613 3118 1.734748 GAACTCTCGGTCGATCCCC 59.265 63.158 0.00 0.00 0.00 4.81
2615 3120 3.288290 CTCTCGGTCGATCCCCGG 61.288 72.222 16.09 0.00 45.51 5.73
2616 3121 3.769369 CTCTCGGTCGATCCCCGGA 62.769 68.421 16.09 11.78 45.51 5.14
2617 3122 2.597805 CTCGGTCGATCCCCGGAT 60.598 66.667 16.09 0.00 45.51 4.18
2618 3123 2.910479 TCGGTCGATCCCCGGATG 60.910 66.667 16.09 0.00 45.51 3.51
2619 3124 3.991051 CGGTCGATCCCCGGATGG 61.991 72.222 0.73 0.00 41.78 3.51
2620 3125 2.523412 GGTCGATCCCCGGATGGA 60.523 66.667 0.73 1.22 37.10 3.41
2621 3126 2.138179 GGTCGATCCCCGGATGGAA 61.138 63.158 0.73 0.00 40.16 3.53
2622 3127 1.692173 GGTCGATCCCCGGATGGAAA 61.692 60.000 0.73 0.00 40.16 3.13
2623 3128 0.179468 GTCGATCCCCGGATGGAAAA 59.821 55.000 0.73 0.00 40.16 2.29
2659 3164 4.201851 CGCCATGAACAAAACTAGATGGAG 60.202 45.833 0.00 0.00 33.52 3.86
2679 3184 1.611977 GCTTTGTGTGTTTACCCCTCC 59.388 52.381 0.00 0.00 0.00 4.30
2680 3185 2.938838 CTTTGTGTGTTTACCCCTCCA 58.061 47.619 0.00 0.00 0.00 3.86
2681 3186 3.292460 CTTTGTGTGTTTACCCCTCCAA 58.708 45.455 0.00 0.00 0.00 3.53
2682 3187 3.603965 TTGTGTGTTTACCCCTCCAAT 57.396 42.857 0.00 0.00 0.00 3.16
2683 3188 4.726035 TTGTGTGTTTACCCCTCCAATA 57.274 40.909 0.00 0.00 0.00 1.90
2684 3189 4.726035 TGTGTGTTTACCCCTCCAATAA 57.274 40.909 0.00 0.00 0.00 1.40
2685 3190 5.263872 TGTGTGTTTACCCCTCCAATAAT 57.736 39.130 0.00 0.00 0.00 1.28
2686 3191 6.390048 TGTGTGTTTACCCCTCCAATAATA 57.610 37.500 0.00 0.00 0.00 0.98
2687 3192 6.181908 TGTGTGTTTACCCCTCCAATAATAC 58.818 40.000 0.00 0.00 0.00 1.89
2688 3193 6.012333 TGTGTGTTTACCCCTCCAATAATACT 60.012 38.462 0.00 0.00 0.00 2.12
2689 3194 7.182387 TGTGTGTTTACCCCTCCAATAATACTA 59.818 37.037 0.00 0.00 0.00 1.82
2690 3195 7.713942 GTGTGTTTACCCCTCCAATAATACTAG 59.286 40.741 0.00 0.00 0.00 2.57
2691 3196 6.709397 GTGTTTACCCCTCCAATAATACTAGC 59.291 42.308 0.00 0.00 0.00 3.42
2692 3197 6.387513 TGTTTACCCCTCCAATAATACTAGCA 59.612 38.462 0.00 0.00 0.00 3.49
2693 3198 7.073215 TGTTTACCCCTCCAATAATACTAGCAT 59.927 37.037 0.00 0.00 0.00 3.79
2694 3199 7.642094 TTACCCCTCCAATAATACTAGCATT 57.358 36.000 0.00 0.00 0.00 3.56
2695 3200 5.880901 ACCCCTCCAATAATACTAGCATTG 58.119 41.667 0.00 0.23 0.00 2.82
2696 3201 4.702131 CCCCTCCAATAATACTAGCATTGC 59.298 45.833 0.00 0.00 0.00 3.56
2697 3202 5.515534 CCCCTCCAATAATACTAGCATTGCT 60.516 44.000 16.63 16.63 43.41 3.91
2698 3203 5.645497 CCCTCCAATAATACTAGCATTGCTC 59.355 44.000 15.81 0.00 40.44 4.26
2699 3204 6.471146 CCTCCAATAATACTAGCATTGCTCT 58.529 40.000 15.81 4.20 40.44 4.09
2700 3205 6.939163 CCTCCAATAATACTAGCATTGCTCTT 59.061 38.462 15.81 5.80 40.44 2.85
2701 3206 8.097038 CCTCCAATAATACTAGCATTGCTCTTA 58.903 37.037 15.81 7.96 40.44 2.10
2702 3207 8.833231 TCCAATAATACTAGCATTGCTCTTAC 57.167 34.615 15.81 0.00 40.44 2.34
2703 3208 7.878127 TCCAATAATACTAGCATTGCTCTTACC 59.122 37.037 15.81 0.00 40.44 2.85
2704 3209 7.119846 CCAATAATACTAGCATTGCTCTTACCC 59.880 40.741 15.81 0.00 40.44 3.69
2705 3210 4.625607 ATACTAGCATTGCTCTTACCCC 57.374 45.455 15.81 0.00 40.44 4.95
2706 3211 2.482494 ACTAGCATTGCTCTTACCCCT 58.518 47.619 15.81 0.00 40.44 4.79
2707 3212 2.436173 ACTAGCATTGCTCTTACCCCTC 59.564 50.000 15.81 0.00 40.44 4.30
2713 3218 1.561643 TGCTCTTACCCCTCTGAGTG 58.438 55.000 3.66 0.00 0.00 3.51
2720 3225 1.577736 ACCCCTCTGAGTGGAGAATG 58.422 55.000 13.37 0.00 35.52 2.67
2729 3234 4.015084 CTGAGTGGAGAATGGCAGAAAAT 58.985 43.478 0.00 0.00 0.00 1.82
2745 3250 6.808704 GGCAGAAAATGATTAACAGAGGAAAC 59.191 38.462 0.00 0.00 0.00 2.78
2747 3252 7.540055 GCAGAAAATGATTAACAGAGGAAACAG 59.460 37.037 0.00 0.00 0.00 3.16
2779 3284 7.445121 TCATGGCTCTGTTTAGATAAGGTATG 58.555 38.462 0.00 0.00 31.21 2.39
2852 3357 2.105528 CAGCCCGAATGCCATTGC 59.894 61.111 0.00 0.00 38.26 3.56
3009 3551 2.010582 GCAACCGAGCGAGAGAGGAT 62.011 60.000 0.00 0.00 0.00 3.24
3010 3552 0.248825 CAACCGAGCGAGAGAGGATG 60.249 60.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.740296 CCCCACCTGCGTTAACGAG 60.740 63.158 31.03 22.16 43.02 4.18
3 4 2.744709 CCCCCACCTGCGTTAACG 60.745 66.667 23.40 23.40 43.27 3.18
4 5 1.673337 GACCCCCACCTGCGTTAAC 60.673 63.158 0.00 0.00 0.00 2.01
5 6 2.751688 GACCCCCACCTGCGTTAA 59.248 61.111 0.00 0.00 0.00 2.01
6 7 3.697747 CGACCCCCACCTGCGTTA 61.698 66.667 0.00 0.00 0.00 3.18
9 10 4.636435 AAACGACCCCCACCTGCG 62.636 66.667 0.00 0.00 0.00 5.18
10 11 2.671963 GAAACGACCCCCACCTGC 60.672 66.667 0.00 0.00 0.00 4.85
11 12 1.003718 GAGAAACGACCCCCACCTG 60.004 63.158 0.00 0.00 0.00 4.00
12 13 2.580601 CGAGAAACGACCCCCACCT 61.581 63.158 0.00 0.00 45.77 4.00
13 14 2.047560 CGAGAAACGACCCCCACC 60.048 66.667 0.00 0.00 45.77 4.61
14 15 3.053828 TCGAGAAACGACCCCCAC 58.946 61.111 0.00 0.00 46.45 4.61
21 22 5.621920 AGAATCGTCTGAGTCGAGAAACGA 61.622 45.833 7.91 9.79 43.75 3.85
22 23 2.529136 ATCGTCTGAGTCGAGAAACG 57.471 50.000 7.91 0.00 40.57 3.60
23 24 4.086199 AGAATCGTCTGAGTCGAGAAAC 57.914 45.455 7.91 0.06 43.75 2.78
24 25 4.343811 GAGAATCGTCTGAGTCGAGAAA 57.656 45.455 7.91 0.00 43.75 2.52
39 40 3.057734 ACACGTCTTTCCAACGAGAATC 58.942 45.455 2.33 0.00 42.62 2.52
40 41 2.800544 CACACGTCTTTCCAACGAGAAT 59.199 45.455 2.33 0.00 42.62 2.40
41 42 2.198406 CACACGTCTTTCCAACGAGAA 58.802 47.619 2.33 0.00 42.62 2.87
42 43 1.537348 CCACACGTCTTTCCAACGAGA 60.537 52.381 2.33 0.00 42.62 4.04
43 44 0.859232 CCACACGTCTTTCCAACGAG 59.141 55.000 2.33 0.00 42.62 4.18
44 45 1.155424 GCCACACGTCTTTCCAACGA 61.155 55.000 2.33 0.00 42.62 3.85
45 46 1.157870 AGCCACACGTCTTTCCAACG 61.158 55.000 0.00 0.00 45.37 4.10
46 47 0.586802 GAGCCACACGTCTTTCCAAC 59.413 55.000 0.00 0.00 0.00 3.77
47 48 0.878523 CGAGCCACACGTCTTTCCAA 60.879 55.000 0.00 0.00 0.00 3.53
48 49 1.300620 CGAGCCACACGTCTTTCCA 60.301 57.895 0.00 0.00 0.00 3.53
49 50 0.389948 ATCGAGCCACACGTCTTTCC 60.390 55.000 0.00 0.00 0.00 3.13
50 51 1.918609 GTATCGAGCCACACGTCTTTC 59.081 52.381 0.00 0.00 0.00 2.62
51 52 1.403780 GGTATCGAGCCACACGTCTTT 60.404 52.381 4.16 0.00 0.00 2.52
52 53 0.172803 GGTATCGAGCCACACGTCTT 59.827 55.000 4.16 0.00 0.00 3.01
53 54 0.680280 AGGTATCGAGCCACACGTCT 60.680 55.000 10.84 0.00 0.00 4.18
54 55 0.248539 GAGGTATCGAGCCACACGTC 60.249 60.000 10.84 2.34 0.00 4.34
55 56 1.807886 GAGGTATCGAGCCACACGT 59.192 57.895 10.84 0.00 0.00 4.49
56 57 4.711980 GAGGTATCGAGCCACACG 57.288 61.111 10.84 0.00 0.00 4.49
66 67 0.813184 TTGGTGTCGTCCGAGGTATC 59.187 55.000 0.00 0.00 0.00 2.24
67 68 0.529378 GTTGGTGTCGTCCGAGGTAT 59.471 55.000 0.00 0.00 0.00 2.73
68 69 1.855213 CGTTGGTGTCGTCCGAGGTA 61.855 60.000 0.00 0.00 0.00 3.08
69 70 2.732658 GTTGGTGTCGTCCGAGGT 59.267 61.111 0.00 0.00 0.00 3.85
70 71 2.430244 CGTTGGTGTCGTCCGAGG 60.430 66.667 0.00 0.00 0.00 4.63
71 72 1.442184 CTCGTTGGTGTCGTCCGAG 60.442 63.158 0.00 0.00 39.02 4.63
72 73 1.446516 TTCTCGTTGGTGTCGTCCGA 61.447 55.000 0.00 0.00 0.00 4.55
73 74 0.388134 ATTCTCGTTGGTGTCGTCCG 60.388 55.000 0.00 0.00 0.00 4.79
74 75 1.068474 CATTCTCGTTGGTGTCGTCC 58.932 55.000 0.00 0.00 0.00 4.79
75 76 1.068474 CCATTCTCGTTGGTGTCGTC 58.932 55.000 0.00 0.00 0.00 4.20
76 77 0.391597 ACCATTCTCGTTGGTGTCGT 59.608 50.000 0.00 0.00 45.71 4.34
77 78 3.210857 ACCATTCTCGTTGGTGTCG 57.789 52.632 0.00 0.00 45.71 4.35
82 83 1.660607 CGTCATCACCATTCTCGTTGG 59.339 52.381 0.00 0.00 40.26 3.77
83 84 2.606108 TCGTCATCACCATTCTCGTTG 58.394 47.619 0.00 0.00 0.00 4.10
84 85 3.526931 ATCGTCATCACCATTCTCGTT 57.473 42.857 0.00 0.00 0.00 3.85
85 86 3.448686 GAATCGTCATCACCATTCTCGT 58.551 45.455 0.00 0.00 0.00 4.18
86 87 2.469147 CGAATCGTCATCACCATTCTCG 59.531 50.000 0.00 0.00 0.00 4.04
87 88 2.797156 CCGAATCGTCATCACCATTCTC 59.203 50.000 0.82 0.00 0.00 2.87
88 89 2.430694 TCCGAATCGTCATCACCATTCT 59.569 45.455 0.82 0.00 0.00 2.40
89 90 2.797156 CTCCGAATCGTCATCACCATTC 59.203 50.000 0.82 0.00 0.00 2.67
90 91 2.168521 ACTCCGAATCGTCATCACCATT 59.831 45.455 0.82 0.00 0.00 3.16
91 92 1.757118 ACTCCGAATCGTCATCACCAT 59.243 47.619 0.82 0.00 0.00 3.55
92 93 1.182667 ACTCCGAATCGTCATCACCA 58.817 50.000 0.82 0.00 0.00 4.17
93 94 2.287668 CCTACTCCGAATCGTCATCACC 60.288 54.545 0.82 0.00 0.00 4.02
94 95 2.358267 ACCTACTCCGAATCGTCATCAC 59.642 50.000 0.82 0.00 0.00 3.06
95 96 2.651455 ACCTACTCCGAATCGTCATCA 58.349 47.619 0.82 0.00 0.00 3.07
96 97 3.315749 AGAACCTACTCCGAATCGTCATC 59.684 47.826 0.82 0.00 0.00 2.92
97 98 3.288964 AGAACCTACTCCGAATCGTCAT 58.711 45.455 0.82 0.00 0.00 3.06
98 99 2.719739 AGAACCTACTCCGAATCGTCA 58.280 47.619 0.82 0.00 0.00 4.35
99 100 3.876320 ACTAGAACCTACTCCGAATCGTC 59.124 47.826 0.82 0.00 0.00 4.20
100 101 3.883669 ACTAGAACCTACTCCGAATCGT 58.116 45.455 0.82 0.00 0.00 3.73
101 102 4.599047 CAACTAGAACCTACTCCGAATCG 58.401 47.826 0.00 0.00 0.00 3.34
102 103 4.142227 TGCAACTAGAACCTACTCCGAATC 60.142 45.833 0.00 0.00 0.00 2.52
103 104 3.767673 TGCAACTAGAACCTACTCCGAAT 59.232 43.478 0.00 0.00 0.00 3.34
104 105 3.057033 GTGCAACTAGAACCTACTCCGAA 60.057 47.826 0.00 0.00 0.00 4.30
105 106 2.490903 GTGCAACTAGAACCTACTCCGA 59.509 50.000 0.00 0.00 0.00 4.55
106 107 2.416972 GGTGCAACTAGAACCTACTCCG 60.417 54.545 0.00 0.00 43.40 4.63
107 108 2.416972 CGGTGCAACTAGAACCTACTCC 60.417 54.545 0.00 0.00 44.73 3.85
108 109 2.230750 ACGGTGCAACTAGAACCTACTC 59.769 50.000 0.00 0.00 44.73 2.59
109 110 2.245582 ACGGTGCAACTAGAACCTACT 58.754 47.619 0.00 0.00 44.73 2.57
110 111 2.738013 ACGGTGCAACTAGAACCTAC 57.262 50.000 0.00 0.00 44.73 3.18
111 112 3.424703 ACTACGGTGCAACTAGAACCTA 58.575 45.455 13.15 0.00 44.73 3.08
112 113 2.245582 ACTACGGTGCAACTAGAACCT 58.754 47.619 13.15 0.00 44.73 3.50
113 114 2.738013 ACTACGGTGCAACTAGAACC 57.262 50.000 13.15 0.00 43.29 3.62
114 115 6.589139 AGATAAAACTACGGTGCAACTAGAAC 59.411 38.462 13.15 0.00 36.74 3.01
115 116 6.694447 AGATAAAACTACGGTGCAACTAGAA 58.306 36.000 13.15 0.23 36.74 2.10
116 117 6.276832 AGATAAAACTACGGTGCAACTAGA 57.723 37.500 13.15 0.00 36.74 2.43
117 118 7.256286 ACTAGATAAAACTACGGTGCAACTAG 58.744 38.462 0.00 3.43 36.74 2.57
118 119 7.161773 ACTAGATAAAACTACGGTGCAACTA 57.838 36.000 0.00 0.00 36.74 2.24
119 120 6.034161 ACTAGATAAAACTACGGTGCAACT 57.966 37.500 0.00 0.00 36.74 3.16
120 121 6.716898 AACTAGATAAAACTACGGTGCAAC 57.283 37.500 0.00 0.00 0.00 4.17
145 146 9.926158 TCCAACACGATAAAAACTACTACAATA 57.074 29.630 0.00 0.00 0.00 1.90
146 147 8.715088 GTCCAACACGATAAAAACTACTACAAT 58.285 33.333 0.00 0.00 0.00 2.71
147 148 7.927629 AGTCCAACACGATAAAAACTACTACAA 59.072 33.333 0.00 0.00 0.00 2.41
148 149 7.436118 AGTCCAACACGATAAAAACTACTACA 58.564 34.615 0.00 0.00 0.00 2.74
149 150 7.201299 CGAGTCCAACACGATAAAAACTACTAC 60.201 40.741 0.00 0.00 34.12 2.73
150 151 6.803320 CGAGTCCAACACGATAAAAACTACTA 59.197 38.462 0.00 0.00 34.12 1.82
151 152 5.632347 CGAGTCCAACACGATAAAAACTACT 59.368 40.000 0.00 0.00 34.12 2.57
152 153 5.403466 ACGAGTCCAACACGATAAAAACTAC 59.597 40.000 4.01 0.00 35.77 2.73
153 154 5.531634 ACGAGTCCAACACGATAAAAACTA 58.468 37.500 4.01 0.00 35.77 2.24
154 155 4.374399 ACGAGTCCAACACGATAAAAACT 58.626 39.130 4.01 0.00 35.77 2.66
155 156 4.720530 ACGAGTCCAACACGATAAAAAC 57.279 40.909 4.01 0.00 35.77 2.43
156 157 5.738118 AAACGAGTCCAACACGATAAAAA 57.262 34.783 4.01 0.00 35.77 1.94
157 158 5.738118 AAAACGAGTCCAACACGATAAAA 57.262 34.783 4.01 0.00 35.77 1.52
158 159 5.738118 AAAAACGAGTCCAACACGATAAA 57.262 34.783 4.01 0.00 35.77 1.40
178 179 7.828717 TGGTTCATCACAGCATAGATAGAAAAA 59.171 33.333 0.00 0.00 0.00 1.94
179 180 7.337938 TGGTTCATCACAGCATAGATAGAAAA 58.662 34.615 0.00 0.00 0.00 2.29
180 181 6.888105 TGGTTCATCACAGCATAGATAGAAA 58.112 36.000 0.00 0.00 0.00 2.52
181 182 6.484364 TGGTTCATCACAGCATAGATAGAA 57.516 37.500 0.00 0.00 0.00 2.10
182 183 6.042437 ACATGGTTCATCACAGCATAGATAGA 59.958 38.462 0.00 0.00 31.12 1.98
183 184 6.228995 ACATGGTTCATCACAGCATAGATAG 58.771 40.000 0.00 0.00 31.12 2.08
184 185 6.178607 ACATGGTTCATCACAGCATAGATA 57.821 37.500 0.00 0.00 31.12 1.98
185 186 5.045012 ACATGGTTCATCACAGCATAGAT 57.955 39.130 0.00 0.00 31.12 1.98
186 187 4.492494 ACATGGTTCATCACAGCATAGA 57.508 40.909 0.00 0.00 31.12 1.98
187 188 4.209911 CGTACATGGTTCATCACAGCATAG 59.790 45.833 0.00 0.00 31.12 2.23
188 189 4.119136 CGTACATGGTTCATCACAGCATA 58.881 43.478 0.00 0.00 31.12 3.14
189 190 2.938451 CGTACATGGTTCATCACAGCAT 59.062 45.455 0.00 0.00 32.49 3.79
190 191 2.345876 CGTACATGGTTCATCACAGCA 58.654 47.619 0.00 0.00 0.00 4.41
191 192 1.062587 GCGTACATGGTTCATCACAGC 59.937 52.381 0.00 0.00 0.00 4.40
192 193 2.345876 TGCGTACATGGTTCATCACAG 58.654 47.619 0.00 0.00 0.00 3.66
193 194 2.464157 TGCGTACATGGTTCATCACA 57.536 45.000 0.00 0.00 0.00 3.58
194 195 3.126858 ACAATGCGTACATGGTTCATCAC 59.873 43.478 0.00 0.00 37.10 3.06
195 196 3.126686 CACAATGCGTACATGGTTCATCA 59.873 43.478 0.00 0.00 38.46 3.07
196 197 3.373748 TCACAATGCGTACATGGTTCATC 59.626 43.478 0.00 0.00 38.46 2.92
197 198 3.342719 TCACAATGCGTACATGGTTCAT 58.657 40.909 0.00 0.00 38.46 2.57
198 199 2.772287 TCACAATGCGTACATGGTTCA 58.228 42.857 0.00 0.00 38.46 3.18
199 200 3.822594 TTCACAATGCGTACATGGTTC 57.177 42.857 0.00 0.00 38.46 3.62
200 201 4.782019 ATTTCACAATGCGTACATGGTT 57.218 36.364 0.00 0.00 38.46 3.67
201 202 5.822519 AGATATTTCACAATGCGTACATGGT 59.177 36.000 0.00 0.00 41.40 3.55
202 203 6.304356 AGATATTTCACAATGCGTACATGG 57.696 37.500 0.00 0.00 36.36 3.66
208 209 9.803315 ACGATATATAGATATTTCACAATGCGT 57.197 29.630 0.00 0.00 0.00 5.24
271 272 9.391006 ACAAACAATATATGTACTCCGAACAAT 57.609 29.630 0.00 0.00 42.99 2.71
272 273 8.661257 CACAAACAATATATGTACTCCGAACAA 58.339 33.333 0.00 0.00 42.99 2.83
273 274 7.201574 GCACAAACAATATATGTACTCCGAACA 60.202 37.037 0.00 0.00 42.99 3.18
274 275 7.123830 GCACAAACAATATATGTACTCCGAAC 58.876 38.462 0.00 0.00 42.99 3.95
275 276 6.819146 TGCACAAACAATATATGTACTCCGAA 59.181 34.615 0.00 0.00 42.99 4.30
276 277 6.342111 TGCACAAACAATATATGTACTCCGA 58.658 36.000 0.00 0.00 42.99 4.55
277 278 6.597262 TGCACAAACAATATATGTACTCCG 57.403 37.500 0.00 0.00 42.99 4.63
278 279 8.122952 GTCTTGCACAAACAATATATGTACTCC 58.877 37.037 0.00 0.00 42.99 3.85
279 280 7.846107 CGTCTTGCACAAACAATATATGTACTC 59.154 37.037 0.00 0.00 42.99 2.59
280 281 7.676338 GCGTCTTGCACAAACAATATATGTACT 60.676 37.037 0.00 0.00 42.48 2.73
281 282 6.410914 GCGTCTTGCACAAACAATATATGTAC 59.589 38.462 0.00 0.00 42.48 2.90
282 283 6.482835 GCGTCTTGCACAAACAATATATGTA 58.517 36.000 0.00 0.00 42.48 2.29
283 284 5.331902 GCGTCTTGCACAAACAATATATGT 58.668 37.500 0.00 0.00 44.28 2.29
284 285 4.434266 CGCGTCTTGCACAAACAATATATG 59.566 41.667 0.00 0.00 46.97 1.78
285 286 4.587306 CGCGTCTTGCACAAACAATATAT 58.413 39.130 0.00 0.00 46.97 0.86
286 287 3.726486 GCGCGTCTTGCACAAACAATATA 60.726 43.478 8.43 0.00 46.97 0.86
287 288 2.850321 CGCGTCTTGCACAAACAATAT 58.150 42.857 0.00 0.00 46.97 1.28
288 289 1.661743 GCGCGTCTTGCACAAACAATA 60.662 47.619 8.43 0.00 46.97 1.90
289 290 0.934436 GCGCGTCTTGCACAAACAAT 60.934 50.000 8.43 0.00 46.97 2.71
290 291 1.585002 GCGCGTCTTGCACAAACAA 60.585 52.632 8.43 0.00 46.97 2.83
291 292 2.024022 GCGCGTCTTGCACAAACA 59.976 55.556 8.43 0.00 46.97 2.83
292 293 3.085010 CGCGCGTCTTGCACAAAC 61.085 61.111 24.19 0.00 46.97 2.93
293 294 4.954680 GCGCGCGTCTTGCACAAA 62.955 61.111 32.35 0.00 46.97 2.83
308 309 3.046460 GCTGCAAAAATGCGACGCG 62.046 57.895 16.14 3.53 37.69 6.01
309 310 2.765150 GCTGCAAAAATGCGACGC 59.235 55.556 14.19 14.19 37.69 5.19
314 315 1.190763 CAACAGACGCTGCAAAAATGC 59.809 47.619 0.00 0.00 34.37 3.56
315 316 2.730069 TCAACAGACGCTGCAAAAATG 58.270 42.857 0.00 0.00 34.37 2.32
316 317 3.181487 ACTTCAACAGACGCTGCAAAAAT 60.181 39.130 0.00 0.00 34.37 1.82
317 318 2.163412 ACTTCAACAGACGCTGCAAAAA 59.837 40.909 0.00 0.00 34.37 1.94
318 319 1.742831 ACTTCAACAGACGCTGCAAAA 59.257 42.857 0.00 0.00 34.37 2.44
319 320 1.378531 ACTTCAACAGACGCTGCAAA 58.621 45.000 0.00 0.00 34.37 3.68
320 321 1.378531 AACTTCAACAGACGCTGCAA 58.621 45.000 0.00 0.00 34.37 4.08
321 322 1.864711 GTAACTTCAACAGACGCTGCA 59.135 47.619 0.00 0.00 34.37 4.41
322 323 1.136611 CGTAACTTCAACAGACGCTGC 60.137 52.381 6.74 0.00 34.37 5.25
323 324 1.455786 CCGTAACTTCAACAGACGCTG 59.544 52.381 5.47 5.47 37.52 5.18
324 325 1.779569 CCGTAACTTCAACAGACGCT 58.220 50.000 0.00 0.00 32.29 5.07
325 326 0.163146 GCCGTAACTTCAACAGACGC 59.837 55.000 0.00 0.00 32.29 5.19
326 327 0.433492 CGCCGTAACTTCAACAGACG 59.567 55.000 0.00 0.00 0.00 4.18
327 328 0.163146 GCGCCGTAACTTCAACAGAC 59.837 55.000 0.00 0.00 0.00 3.51
328 329 1.279527 CGCGCCGTAACTTCAACAGA 61.280 55.000 0.00 0.00 0.00 3.41
329 330 1.129809 CGCGCCGTAACTTCAACAG 59.870 57.895 0.00 0.00 0.00 3.16
330 331 2.945615 GCGCGCCGTAACTTCAACA 61.946 57.895 23.24 0.00 0.00 3.33
331 332 1.346378 TAGCGCGCCGTAACTTCAAC 61.346 55.000 30.33 0.00 0.00 3.18
332 333 0.666880 TTAGCGCGCCGTAACTTCAA 60.667 50.000 30.33 5.08 0.00 2.69
333 334 0.666880 TTTAGCGCGCCGTAACTTCA 60.667 50.000 30.33 2.67 0.00 3.02
334 335 0.024619 CTTTAGCGCGCCGTAACTTC 59.975 55.000 30.33 0.00 0.00 3.01
335 336 0.668401 ACTTTAGCGCGCCGTAACTT 60.668 50.000 30.33 10.14 0.00 2.66
336 337 0.668401 AACTTTAGCGCGCCGTAACT 60.668 50.000 30.33 11.01 0.00 2.24
337 338 0.164432 AAACTTTAGCGCGCCGTAAC 59.836 50.000 30.33 0.00 0.00 2.50
338 339 1.389784 GTAAACTTTAGCGCGCCGTAA 59.610 47.619 30.33 18.33 0.00 3.18
339 340 0.991344 GTAAACTTTAGCGCGCCGTA 59.009 50.000 30.33 12.40 0.00 4.02
340 341 0.945265 TGTAAACTTTAGCGCGCCGT 60.945 50.000 30.33 17.14 0.00 5.68
341 342 0.247145 CTGTAAACTTTAGCGCGCCG 60.247 55.000 30.33 16.43 0.00 6.46
342 343 0.520619 GCTGTAAACTTTAGCGCGCC 60.521 55.000 30.33 10.31 0.00 6.53
343 344 2.912542 GCTGTAAACTTTAGCGCGC 58.087 52.632 26.66 26.66 0.00 6.86
347 348 0.096454 CGGCCGCTGTAAACTTTAGC 59.904 55.000 14.67 0.00 0.00 3.09
348 349 0.096454 GCGGCCGCTGTAAACTTTAG 59.904 55.000 41.71 0.75 38.26 1.85
349 350 2.164491 GCGGCCGCTGTAAACTTTA 58.836 52.632 41.71 0.00 38.26 1.85
350 351 2.951458 GCGGCCGCTGTAAACTTT 59.049 55.556 41.71 0.00 38.26 2.66
367 368 2.104859 CATGTGACGCTGGCTCCAG 61.105 63.158 11.47 11.47 46.15 3.86
368 369 2.046988 CATGTGACGCTGGCTCCA 60.047 61.111 0.00 0.00 0.00 3.86
369 370 2.046892 ACATGTGACGCTGGCTCC 60.047 61.111 0.00 0.00 0.00 4.70
370 371 2.447887 CGACATGTGACGCTGGCTC 61.448 63.158 1.15 0.00 0.00 4.70
371 372 2.433145 CGACATGTGACGCTGGCT 60.433 61.111 1.15 0.00 0.00 4.75
377 378 2.219355 GTTTTTACGCGACATGTGACG 58.781 47.619 15.93 9.50 36.38 4.35
378 379 3.060138 TCTGTTTTTACGCGACATGTGAC 60.060 43.478 15.93 2.92 0.00 3.67
379 380 3.060138 GTCTGTTTTTACGCGACATGTGA 60.060 43.478 15.93 0.00 0.00 3.58
380 381 3.215244 GTCTGTTTTTACGCGACATGTG 58.785 45.455 15.93 0.00 0.00 3.21
381 382 2.097104 CGTCTGTTTTTACGCGACATGT 60.097 45.455 15.93 0.00 31.66 3.21
382 383 2.154198 TCGTCTGTTTTTACGCGACATG 59.846 45.455 15.93 0.66 38.94 3.21
383 384 2.154389 GTCGTCTGTTTTTACGCGACAT 59.846 45.455 15.93 0.00 45.17 3.06
384 385 1.518102 GTCGTCTGTTTTTACGCGACA 59.482 47.619 15.93 5.02 45.17 4.35
385 386 1.136803 GGTCGTCTGTTTTTACGCGAC 60.137 52.381 15.93 0.00 45.13 5.19
386 387 1.130955 GGTCGTCTGTTTTTACGCGA 58.869 50.000 15.93 0.00 38.94 5.87
387 388 0.179292 CGGTCGTCTGTTTTTACGCG 60.179 55.000 3.53 3.53 38.94 6.01
388 389 0.162294 CCGGTCGTCTGTTTTTACGC 59.838 55.000 0.00 0.00 38.94 4.42
389 390 0.162294 GCCGGTCGTCTGTTTTTACG 59.838 55.000 1.90 0.00 40.40 3.18
390 391 0.162294 CGCCGGTCGTCTGTTTTTAC 59.838 55.000 1.90 0.00 0.00 2.01
391 392 1.559149 GCGCCGGTCGTCTGTTTTTA 61.559 55.000 17.38 0.00 41.07 1.52
392 393 2.888998 GCGCCGGTCGTCTGTTTTT 61.889 57.895 17.38 0.00 41.07 1.94
393 394 3.343421 GCGCCGGTCGTCTGTTTT 61.343 61.111 17.38 0.00 41.07 2.43
403 404 4.903010 AAGACACAACGCGCCGGT 62.903 61.111 5.73 0.00 0.00 5.28
404 405 4.368808 CAAGACACAACGCGCCGG 62.369 66.667 5.73 0.00 0.00 6.13
405 406 4.368808 CCAAGACACAACGCGCCG 62.369 66.667 5.73 0.00 0.00 6.46
406 407 4.025401 CCCAAGACACAACGCGCC 62.025 66.667 5.73 0.00 0.00 6.53
407 408 4.683334 GCCCAAGACACAACGCGC 62.683 66.667 5.73 0.00 0.00 6.86
408 409 4.368808 CGCCCAAGACACAACGCG 62.369 66.667 3.53 3.53 0.00 6.01
409 410 4.025401 CCGCCCAAGACACAACGC 62.025 66.667 0.00 0.00 0.00 4.84
410 411 3.353836 CCCGCCCAAGACACAACG 61.354 66.667 0.00 0.00 0.00 4.10
411 412 1.515521 CTTCCCGCCCAAGACACAAC 61.516 60.000 0.00 0.00 0.00 3.32
412 413 1.228124 CTTCCCGCCCAAGACACAA 60.228 57.895 0.00 0.00 0.00 3.33
413 414 1.488705 ATCTTCCCGCCCAAGACACA 61.489 55.000 0.00 0.00 32.65 3.72
414 415 1.026718 CATCTTCCCGCCCAAGACAC 61.027 60.000 0.00 0.00 32.65 3.67
415 416 1.299648 CATCTTCCCGCCCAAGACA 59.700 57.895 0.00 0.00 32.65 3.41
416 417 2.115291 GCATCTTCCCGCCCAAGAC 61.115 63.158 0.00 0.00 32.65 3.01
417 418 2.257409 GAGCATCTTCCCGCCCAAGA 62.257 60.000 0.00 0.00 34.37 3.02
418 419 1.821332 GAGCATCTTCCCGCCCAAG 60.821 63.158 0.00 0.00 0.00 3.61
419 420 2.272146 GAGCATCTTCCCGCCCAA 59.728 61.111 0.00 0.00 0.00 4.12
430 431 2.167861 GTCACGCCGGAAGAGCATC 61.168 63.158 5.05 0.00 0.00 3.91
431 432 2.125512 GTCACGCCGGAAGAGCAT 60.126 61.111 5.05 0.00 0.00 3.79
432 433 3.573772 CTGTCACGCCGGAAGAGCA 62.574 63.158 5.05 0.00 0.00 4.26
433 434 2.811317 CTGTCACGCCGGAAGAGC 60.811 66.667 5.05 0.00 0.00 4.09
434 435 1.734477 CACTGTCACGCCGGAAGAG 60.734 63.158 5.05 0.00 0.00 2.85
435 436 2.197605 TCACTGTCACGCCGGAAGA 61.198 57.895 5.05 0.00 0.00 2.87
436 437 2.022129 GTCACTGTCACGCCGGAAG 61.022 63.158 5.05 0.00 0.00 3.46
437 438 2.023414 AAGTCACTGTCACGCCGGAA 62.023 55.000 5.05 0.00 0.00 4.30
438 439 1.174078 TAAGTCACTGTCACGCCGGA 61.174 55.000 5.05 0.00 0.00 5.14
439 440 0.732880 CTAAGTCACTGTCACGCCGG 60.733 60.000 0.00 0.00 0.00 6.13
440 441 1.344942 GCTAAGTCACTGTCACGCCG 61.345 60.000 0.00 0.00 0.00 6.46
441 442 0.319555 TGCTAAGTCACTGTCACGCC 60.320 55.000 0.00 0.00 0.00 5.68
442 443 1.714794 ATGCTAAGTCACTGTCACGC 58.285 50.000 0.00 0.00 0.00 5.34
443 444 4.732285 AAAATGCTAAGTCACTGTCACG 57.268 40.909 0.00 0.00 0.00 4.35
444 445 6.071463 CGTAAAAATGCTAAGTCACTGTCAC 58.929 40.000 0.00 0.00 0.00 3.67
445 446 5.178623 CCGTAAAAATGCTAAGTCACTGTCA 59.821 40.000 0.00 0.00 0.00 3.58
446 447 5.390567 CCCGTAAAAATGCTAAGTCACTGTC 60.391 44.000 0.00 0.00 0.00 3.51
447 448 4.454504 CCCGTAAAAATGCTAAGTCACTGT 59.545 41.667 0.00 0.00 0.00 3.55
448 449 4.142687 CCCCGTAAAAATGCTAAGTCACTG 60.143 45.833 0.00 0.00 0.00 3.66
449 450 4.007659 CCCCGTAAAAATGCTAAGTCACT 58.992 43.478 0.00 0.00 0.00 3.41
450 451 3.128068 CCCCCGTAAAAATGCTAAGTCAC 59.872 47.826 0.00 0.00 0.00 3.67
451 452 3.009253 TCCCCCGTAAAAATGCTAAGTCA 59.991 43.478 0.00 0.00 0.00 3.41
452 453 3.613030 TCCCCCGTAAAAATGCTAAGTC 58.387 45.455 0.00 0.00 0.00 3.01
453 454 3.617284 CTCCCCCGTAAAAATGCTAAGT 58.383 45.455 0.00 0.00 0.00 2.24
454 455 2.949644 CCTCCCCCGTAAAAATGCTAAG 59.050 50.000 0.00 0.00 0.00 2.18
455 456 2.577105 TCCTCCCCCGTAAAAATGCTAA 59.423 45.455 0.00 0.00 0.00 3.09
456 457 2.092807 GTCCTCCCCCGTAAAAATGCTA 60.093 50.000 0.00 0.00 0.00 3.49
457 458 0.996583 TCCTCCCCCGTAAAAATGCT 59.003 50.000 0.00 0.00 0.00 3.79
458 459 1.100510 GTCCTCCCCCGTAAAAATGC 58.899 55.000 0.00 0.00 0.00 3.56
459 460 2.500392 TGTCCTCCCCCGTAAAAATG 57.500 50.000 0.00 0.00 0.00 2.32
460 461 2.357777 CCATGTCCTCCCCCGTAAAAAT 60.358 50.000 0.00 0.00 0.00 1.82
461 462 1.004979 CCATGTCCTCCCCCGTAAAAA 59.995 52.381 0.00 0.00 0.00 1.94
462 463 0.621609 CCATGTCCTCCCCCGTAAAA 59.378 55.000 0.00 0.00 0.00 1.52
463 464 0.548197 ACCATGTCCTCCCCCGTAAA 60.548 55.000 0.00 0.00 0.00 2.01
464 465 0.979187 GACCATGTCCTCCCCCGTAA 60.979 60.000 0.00 0.00 0.00 3.18
465 466 1.382146 GACCATGTCCTCCCCCGTA 60.382 63.158 0.00 0.00 0.00 4.02
466 467 2.687566 GACCATGTCCTCCCCCGT 60.688 66.667 0.00 0.00 0.00 5.28
467 468 2.687200 TGACCATGTCCTCCCCCG 60.687 66.667 0.00 0.00 0.00 5.73
468 469 2.998949 GTGACCATGTCCTCCCCC 59.001 66.667 0.00 0.00 0.00 5.40
469 470 1.987855 TCGTGACCATGTCCTCCCC 60.988 63.158 0.00 0.00 0.00 4.81
470 471 1.218316 GTCGTGACCATGTCCTCCC 59.782 63.158 0.00 0.00 0.00 4.30
471 472 0.173708 GAGTCGTGACCATGTCCTCC 59.826 60.000 0.00 0.00 0.00 4.30
472 473 0.179161 CGAGTCGTGACCATGTCCTC 60.179 60.000 3.82 0.00 0.00 3.71
473 474 0.608308 TCGAGTCGTGACCATGTCCT 60.608 55.000 13.12 0.00 0.00 3.85
474 475 0.179161 CTCGAGTCGTGACCATGTCC 60.179 60.000 13.12 0.00 0.00 4.02
475 476 0.803117 TCTCGAGTCGTGACCATGTC 59.197 55.000 13.13 0.00 0.00 3.06
476 477 0.805614 CTCTCGAGTCGTGACCATGT 59.194 55.000 13.13 0.00 0.00 3.21
477 478 1.087501 TCTCTCGAGTCGTGACCATG 58.912 55.000 13.13 3.99 0.00 3.66
478 479 1.822506 TTCTCTCGAGTCGTGACCAT 58.177 50.000 13.13 0.00 0.00 3.55
479 480 1.535896 CTTTCTCTCGAGTCGTGACCA 59.464 52.381 13.13 0.07 0.00 4.02
525 526 2.160721 TGGTAAGGCAGGTAGAGGAG 57.839 55.000 0.00 0.00 0.00 3.69
540 541 6.208007 TCAGATCGTAGAAACAAGAGTTGGTA 59.792 38.462 0.00 0.00 43.58 3.25
541 542 5.010719 TCAGATCGTAGAAACAAGAGTTGGT 59.989 40.000 0.00 0.00 43.58 3.67
542 543 5.470368 TCAGATCGTAGAAACAAGAGTTGG 58.530 41.667 0.00 0.00 43.58 3.77
544 545 6.809196 GTGATCAGATCGTAGAAACAAGAGTT 59.191 38.462 5.91 0.00 43.58 3.01
545 546 6.151985 AGTGATCAGATCGTAGAAACAAGAGT 59.848 38.462 5.91 0.00 43.58 3.24
548 549 6.252441 GTGAGTGATCAGATCGTAGAAACAAG 59.748 42.308 5.91 0.00 43.58 3.16
549 550 6.093404 GTGAGTGATCAGATCGTAGAAACAA 58.907 40.000 5.91 0.00 43.58 2.83
550 551 5.183140 TGTGAGTGATCAGATCGTAGAAACA 59.817 40.000 5.91 3.28 43.58 2.83
551 552 5.641709 TGTGAGTGATCAGATCGTAGAAAC 58.358 41.667 5.91 0.00 43.58 2.78
552 553 5.897377 TGTGAGTGATCAGATCGTAGAAA 57.103 39.130 5.91 0.00 43.58 2.52
553 554 5.590259 TCATGTGAGTGATCAGATCGTAGAA 59.410 40.000 5.91 0.00 43.58 2.10
554 555 5.126067 TCATGTGAGTGATCAGATCGTAGA 58.874 41.667 5.91 0.00 45.75 2.59
555 556 5.429957 TCATGTGAGTGATCAGATCGTAG 57.570 43.478 5.91 0.00 0.00 3.51
556 557 4.261363 GCTCATGTGAGTGATCAGATCGTA 60.261 45.833 11.35 0.00 43.85 3.43
557 558 3.490590 GCTCATGTGAGTGATCAGATCGT 60.491 47.826 11.35 0.00 43.85 3.73
558 559 3.051327 GCTCATGTGAGTGATCAGATCG 58.949 50.000 11.35 0.00 43.85 3.69
559 560 3.181468 TGGCTCATGTGAGTGATCAGATC 60.181 47.826 11.35 3.11 43.85 2.75
560 561 2.770232 TGGCTCATGTGAGTGATCAGAT 59.230 45.455 11.35 0.00 43.85 2.90
569 570 1.134367 CAAAGGCATGGCTCATGTGAG 59.866 52.381 23.56 5.66 43.10 3.51
571 572 0.892755 ACAAAGGCATGGCTCATGTG 59.107 50.000 28.58 22.31 43.10 3.21
579 580 2.886862 TGTTTGTCACAAAGGCATGG 57.113 45.000 2.26 0.00 29.87 3.66
597 600 3.114065 GGACGAACCGACTATAGCTTTG 58.886 50.000 0.00 0.00 0.00 2.77
598 601 2.100418 GGGACGAACCGACTATAGCTTT 59.900 50.000 0.00 0.00 40.11 3.51
599 602 1.680207 GGGACGAACCGACTATAGCTT 59.320 52.381 0.00 0.00 40.11 3.74
600 603 1.133853 AGGGACGAACCGACTATAGCT 60.134 52.381 0.00 0.00 40.11 3.32
601 604 1.316651 AGGGACGAACCGACTATAGC 58.683 55.000 0.00 0.00 40.11 2.97
602 605 2.292845 GGAAGGGACGAACCGACTATAG 59.707 54.545 0.00 0.00 40.11 1.31
603 606 2.301346 GGAAGGGACGAACCGACTATA 58.699 52.381 0.00 0.00 40.11 1.31
604 607 1.109609 GGAAGGGACGAACCGACTAT 58.890 55.000 0.00 0.00 40.11 2.12
605 608 1.308069 CGGAAGGGACGAACCGACTA 61.308 60.000 0.00 0.00 46.94 2.59
701 704 3.814268 CGGGCATGGCGGAAACTG 61.814 66.667 20.48 0.00 0.00 3.16
702 705 3.344137 ATCGGGCATGGCGGAAACT 62.344 57.895 28.89 13.49 0.00 2.66
703 706 2.828549 ATCGGGCATGGCGGAAAC 60.829 61.111 28.89 7.91 0.00 2.78
751 754 1.730772 CGATCGATGGTAGCTAGCAGC 60.731 57.143 26.94 26.94 42.84 5.25
752 755 1.730772 GCGATCGATGGTAGCTAGCAG 60.731 57.143 27.79 16.87 37.10 4.24
821 1177 5.143660 CAGCGCTCTCGATATATATACAGC 58.856 45.833 7.13 0.78 38.10 4.40
822 1178 5.684850 CCAGCGCTCTCGATATATATACAG 58.315 45.833 7.13 0.00 38.10 2.74
823 1179 4.023963 GCCAGCGCTCTCGATATATATACA 60.024 45.833 7.13 0.00 38.10 2.29
824 1180 4.468643 GCCAGCGCTCTCGATATATATAC 58.531 47.826 7.13 0.00 38.10 1.47
843 1199 4.738998 CGCCATTGTCCAGGGCCA 62.739 66.667 6.18 0.00 44.90 5.36
933 1308 2.429971 TGAACTGAGATGAGCAGCTAGG 59.570 50.000 0.00 0.00 36.86 3.02
936 1311 1.901159 ACTGAACTGAGATGAGCAGCT 59.099 47.619 0.00 0.00 36.86 4.24
937 1312 2.270047 GACTGAACTGAGATGAGCAGC 58.730 52.381 0.00 0.00 36.86 5.25
938 1313 2.094803 ACGACTGAACTGAGATGAGCAG 60.095 50.000 0.00 0.00 39.26 4.24
939 1314 1.889170 ACGACTGAACTGAGATGAGCA 59.111 47.619 0.00 0.00 0.00 4.26
984 1370 1.005512 CATGACCGACCGACCAACA 60.006 57.895 0.00 0.00 0.00 3.33
985 1371 1.740296 CCATGACCGACCGACCAAC 60.740 63.158 0.00 0.00 0.00 3.77
986 1372 2.162338 GACCATGACCGACCGACCAA 62.162 60.000 0.00 0.00 0.00 3.67
987 1373 2.602267 ACCATGACCGACCGACCA 60.602 61.111 0.00 0.00 0.00 4.02
1170 1556 4.980805 TGCGTGGCGGAGTTGACC 62.981 66.667 0.00 0.00 0.00 4.02
2070 2575 0.033503 TGCGGTAGGACAGGATGAGA 60.034 55.000 0.00 0.00 39.69 3.27
2080 2585 1.080093 CGAAGCTGTTGCGGTAGGA 60.080 57.895 0.00 0.00 45.42 2.94
2382 2887 0.108138 CCCAGTCCGTGTTCCAGATC 60.108 60.000 0.00 0.00 0.00 2.75
2421 2926 2.395690 GCGCTGATCCGTTCGTTG 59.604 61.111 0.00 0.00 0.00 4.10
2512 3017 1.007336 CCGACGGTTCAAACTCGGAG 61.007 60.000 14.90 2.83 44.70 4.63
2520 3025 2.962786 CGCACACCGACGGTTCAA 60.963 61.111 19.02 0.00 40.02 2.69
2585 3090 1.512310 CGAGAGTTCGTCGCACTCC 60.512 63.158 19.35 11.16 41.55 3.85
2603 3108 1.692173 TTTCCATCCGGGGATCGACC 61.692 60.000 0.00 0.00 42.43 4.79
2609 3114 1.989586 TCTTTCTTTTCCATCCGGGGA 59.010 47.619 0.00 0.00 37.22 4.81
2610 3115 2.507407 TCTTTCTTTTCCATCCGGGG 57.493 50.000 0.00 0.00 37.22 5.73
2611 3116 6.072452 GCTATATTCTTTCTTTTCCATCCGGG 60.072 42.308 0.00 0.00 38.37 5.73
2612 3117 6.347725 CGCTATATTCTTTCTTTTCCATCCGG 60.348 42.308 0.00 0.00 0.00 5.14
2613 3118 6.593978 CGCTATATTCTTTCTTTTCCATCCG 58.406 40.000 0.00 0.00 0.00 4.18
2615 3120 6.017109 TGGCGCTATATTCTTTCTTTTCCATC 60.017 38.462 7.64 0.00 0.00 3.51
2616 3121 5.827797 TGGCGCTATATTCTTTCTTTTCCAT 59.172 36.000 7.64 0.00 0.00 3.41
2617 3122 5.189928 TGGCGCTATATTCTTTCTTTTCCA 58.810 37.500 7.64 0.00 0.00 3.53
2618 3123 5.751243 TGGCGCTATATTCTTTCTTTTCC 57.249 39.130 7.64 0.00 0.00 3.13
2619 3124 6.959361 TCATGGCGCTATATTCTTTCTTTTC 58.041 36.000 5.73 0.00 0.00 2.29
2620 3125 6.942532 TCATGGCGCTATATTCTTTCTTTT 57.057 33.333 5.73 0.00 0.00 2.27
2621 3126 6.318648 TGTTCATGGCGCTATATTCTTTCTTT 59.681 34.615 5.73 0.00 0.00 2.52
2622 3127 5.822519 TGTTCATGGCGCTATATTCTTTCTT 59.177 36.000 5.73 0.00 0.00 2.52
2623 3128 5.368145 TGTTCATGGCGCTATATTCTTTCT 58.632 37.500 5.73 0.00 0.00 2.52
2659 3164 1.611977 GGAGGGGTAAACACACAAAGC 59.388 52.381 0.00 0.00 0.00 3.51
2679 3184 7.119846 GGGGTAAGAGCAATGCTAGTATTATTG 59.880 40.741 8.12 6.33 39.88 1.90
2680 3185 7.017651 AGGGGTAAGAGCAATGCTAGTATTATT 59.982 37.037 8.12 0.00 39.88 1.40
2681 3186 6.502158 AGGGGTAAGAGCAATGCTAGTATTAT 59.498 38.462 8.12 0.00 39.88 1.28
2682 3187 5.844516 AGGGGTAAGAGCAATGCTAGTATTA 59.155 40.000 8.12 2.76 39.88 0.98
2683 3188 4.660771 AGGGGTAAGAGCAATGCTAGTATT 59.339 41.667 8.12 0.00 39.88 1.89
2684 3189 4.235372 AGGGGTAAGAGCAATGCTAGTAT 58.765 43.478 8.12 0.00 39.88 2.12
2685 3190 3.641906 GAGGGGTAAGAGCAATGCTAGTA 59.358 47.826 8.12 0.00 39.88 1.82
2686 3191 2.436173 GAGGGGTAAGAGCAATGCTAGT 59.564 50.000 8.12 0.97 39.88 2.57
2687 3192 2.703007 AGAGGGGTAAGAGCAATGCTAG 59.297 50.000 8.12 0.00 39.88 3.42
2688 3193 2.435805 CAGAGGGGTAAGAGCAATGCTA 59.564 50.000 8.12 0.00 39.88 3.49
2689 3194 1.211457 CAGAGGGGTAAGAGCAATGCT 59.789 52.381 7.79 7.79 43.88 3.79
2690 3195 1.210478 TCAGAGGGGTAAGAGCAATGC 59.790 52.381 0.00 0.00 0.00 3.56
2691 3196 2.503356 ACTCAGAGGGGTAAGAGCAATG 59.497 50.000 1.53 0.00 0.00 2.82
2692 3197 2.503356 CACTCAGAGGGGTAAGAGCAAT 59.497 50.000 1.53 0.00 0.00 3.56
2693 3198 1.902508 CACTCAGAGGGGTAAGAGCAA 59.097 52.381 1.53 0.00 0.00 3.91
2694 3199 1.561643 CACTCAGAGGGGTAAGAGCA 58.438 55.000 1.53 0.00 0.00 4.26
2695 3200 0.827368 CCACTCAGAGGGGTAAGAGC 59.173 60.000 11.11 0.00 32.85 4.09
2696 3201 2.024846 TCTCCACTCAGAGGGGTAAGAG 60.025 54.545 19.00 8.66 40.57 2.85
2697 3202 2.000803 TCTCCACTCAGAGGGGTAAGA 58.999 52.381 19.00 12.10 40.57 2.10
2698 3203 2.534042 TCTCCACTCAGAGGGGTAAG 57.466 55.000 19.00 9.79 40.57 2.34
2699 3204 3.107601 CATTCTCCACTCAGAGGGGTAA 58.892 50.000 19.00 14.15 40.57 2.85
2700 3205 2.626950 CCATTCTCCACTCAGAGGGGTA 60.627 54.545 19.00 5.52 40.57 3.69
2701 3206 1.577736 CATTCTCCACTCAGAGGGGT 58.422 55.000 19.00 0.00 40.57 4.95
2702 3207 0.835941 CCATTCTCCACTCAGAGGGG 59.164 60.000 13.34 13.34 41.27 4.79
2703 3208 0.179936 GCCATTCTCCACTCAGAGGG 59.820 60.000 1.53 0.00 34.46 4.30
2704 3209 0.907486 TGCCATTCTCCACTCAGAGG 59.093 55.000 1.53 0.00 34.46 3.69
2705 3210 1.829849 TCTGCCATTCTCCACTCAGAG 59.170 52.381 0.00 0.00 35.04 3.35
2706 3211 1.942776 TCTGCCATTCTCCACTCAGA 58.057 50.000 0.00 0.00 0.00 3.27
2707 3212 2.775911 TTCTGCCATTCTCCACTCAG 57.224 50.000 0.00 0.00 0.00 3.35
2713 3218 6.866480 TGTTAATCATTTTCTGCCATTCTCC 58.134 36.000 0.00 0.00 0.00 3.71
2720 3225 6.515272 TTCCTCTGTTAATCATTTTCTGCC 57.485 37.500 0.00 0.00 0.00 4.85
2729 3234 4.349636 TCACCCTGTTTCCTCTGTTAATCA 59.650 41.667 0.00 0.00 0.00 2.57
2745 3250 1.064906 ACAGAGCCATGAATCACCCTG 60.065 52.381 0.00 0.00 0.00 4.45
2747 3252 2.134789 AACAGAGCCATGAATCACCC 57.865 50.000 0.00 0.00 0.00 4.61
2779 3284 2.358939 ACATCCGAACGAGGTGTTAC 57.641 50.000 0.00 0.00 42.09 2.50
2852 3357 3.641906 AGTCAATACCCTAACCATCCGAG 59.358 47.826 0.00 0.00 0.00 4.63
3009 3551 0.317854 CTGTCGTGTCTCTGTTCGCA 60.318 55.000 0.00 0.00 0.00 5.10
3010 3552 1.004277 CCTGTCGTGTCTCTGTTCGC 61.004 60.000 0.00 0.00 0.00 4.70
3456 5558 3.937079 TCAGCTACTGATGCATTGTCTTG 59.063 43.478 0.00 3.78 35.39 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.