Multiple sequence alignment - TraesCS6A01G400000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G400000 chr6A 100.000 6495 0 0 2312 8806 609447929 609454423 0.000000e+00 11995.0
1 TraesCS6A01G400000 chr6A 100.000 1988 0 0 1 1988 609445618 609447605 0.000000e+00 3672.0
2 TraesCS6A01G400000 chr6A 94.715 492 22 2 2315 2802 235268514 235268023 0.000000e+00 761.0
3 TraesCS6A01G400000 chr6A 100.000 99 0 0 9085 9183 609454702 609454800 5.660000e-42 183.0
4 TraesCS6A01G400000 chr6D 96.452 5722 127 27 2316 8000 462625986 462631668 0.000000e+00 9372.0
5 TraesCS6A01G400000 chr6D 82.195 1932 179 83 2 1837 462623277 462625139 0.000000e+00 1509.0
6 TraesCS6A01G400000 chr6D 91.914 742 42 13 7993 8726 462631753 462632484 0.000000e+00 1022.0
7 TraesCS6A01G400000 chr6D 74.857 175 37 3 402 576 15446557 15446390 1.280000e-08 73.1
8 TraesCS6A01G400000 chr6B 94.928 2898 122 20 5375 8260 705382050 705384934 0.000000e+00 4514.0
9 TraesCS6A01G400000 chr6B 93.476 2667 126 23 2315 4956 705379257 705381900 0.000000e+00 3917.0
10 TraesCS6A01G400000 chr6B 80.861 1301 128 54 761 1988 705377708 705378960 0.000000e+00 911.0
11 TraesCS6A01G400000 chr6B 90.149 335 18 4 2555 2884 705307491 705307815 1.100000e-113 422.0
12 TraesCS6A01G400000 chr6B 90.800 250 13 7 8538 8779 704763649 704763402 8.890000e-85 326.0
13 TraesCS6A01G400000 chr6B 90.476 105 7 1 5271 5375 705381900 705382001 1.610000e-27 135.0
14 TraesCS6A01G400000 chr6B 89.744 78 5 3 1001 1078 705306838 705306912 7.590000e-16 97.1
15 TraesCS6A01G400000 chr7A 95.528 492 18 2 2315 2802 48384476 48384967 0.000000e+00 784.0
16 TraesCS6A01G400000 chr4A 95.528 492 18 2 2315 2802 405270651 405271142 0.000000e+00 784.0
17 TraesCS6A01G400000 chr4A 95.335 493 19 2 2313 2802 679623397 679622906 0.000000e+00 780.0
18 TraesCS6A01G400000 chr4A 95.142 494 20 3 2313 2802 49917542 49917049 0.000000e+00 776.0
19 TraesCS6A01G400000 chr4A 94.320 493 25 1 2313 2802 355122772 355123264 0.000000e+00 752.0
20 TraesCS6A01G400000 chr4A 94.118 493 25 2 2315 2803 200385095 200384603 0.000000e+00 747.0
21 TraesCS6A01G400000 chr5A 83.788 586 64 23 1026 1589 455892810 455892234 2.270000e-145 527.0
22 TraesCS6A01G400000 chr3B 79.167 480 78 17 3382 3849 253667202 253666733 6.920000e-81 313.0
23 TraesCS6A01G400000 chr3B 75.875 514 103 18 4299 4806 253666632 253666134 9.210000e-60 243.0
24 TraesCS6A01G400000 chr3B 76.611 419 82 13 4392 4806 253633493 253633087 5.580000e-52 217.0
25 TraesCS6A01G400000 chr3D 78.049 533 85 22 3335 3851 174908892 174908376 3.220000e-79 307.0
26 TraesCS6A01G400000 chr3D 77.243 457 83 18 4351 4806 174908225 174907789 1.980000e-61 248.0
27 TraesCS6A01G400000 chr3A 75.483 518 102 21 4299 4806 214123008 214122506 7.170000e-56 230.0
28 TraesCS6A01G400000 chr1D 74.902 510 95 22 58 554 435349713 435349224 1.560000e-47 202.0
29 TraesCS6A01G400000 chr5D 78.445 283 55 4 58 339 453827375 453827652 7.330000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G400000 chr6A 609445618 609454800 9182 False 5283.333333 11995 100.00000 1 9183 3 chr6A.!!$F1 9182
1 TraesCS6A01G400000 chr6D 462623277 462632484 9207 False 3967.666667 9372 90.18700 2 8726 3 chr6D.!!$F1 8724
2 TraesCS6A01G400000 chr6B 705377708 705384934 7226 False 2369.250000 4514 89.93525 761 8260 4 chr6B.!!$F2 7499
3 TraesCS6A01G400000 chr6B 705306838 705307815 977 False 259.550000 422 89.94650 1001 2884 2 chr6B.!!$F1 1883
4 TraesCS6A01G400000 chr5A 455892234 455892810 576 True 527.000000 527 83.78800 1026 1589 1 chr5A.!!$R1 563
5 TraesCS6A01G400000 chr3B 253666134 253667202 1068 True 278.000000 313 77.52100 3382 4806 2 chr3B.!!$R2 1424
6 TraesCS6A01G400000 chr3D 174907789 174908892 1103 True 277.500000 307 77.64600 3335 4806 2 chr3D.!!$R1 1471
7 TraesCS6A01G400000 chr3A 214122506 214123008 502 True 230.000000 230 75.48300 4299 4806 1 chr3A.!!$R1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
755 795 0.033504 TCCTTCAGTCCGCTCAACAC 59.966 55.000 0.00 0.0 0.00 3.32 F
756 796 0.034059 CCTTCAGTCCGCTCAACACT 59.966 55.000 0.00 0.0 0.00 3.55 F
1354 1494 1.079127 CGGAATTCACGAGGCCTGT 60.079 57.895 12.00 5.9 0.00 4.00 F
1855 2082 1.398692 TCAGCCGGCAAAGAAAAAGT 58.601 45.000 31.54 0.0 0.00 2.66 F
3113 3744 0.887933 ATCACGGTTTCAATGTGCCC 59.112 50.000 0.00 0.0 33.69 5.36 F
3531 4163 0.827507 GGGGCTCAACTGCTTTCCAA 60.828 55.000 0.00 0.0 0.00 3.53 F
4226 4875 1.526917 GGATTGAGGCATCCCACCG 60.527 63.158 0.00 0.0 0.00 4.94 F
4436 5094 1.822371 GTGTGGTTGGGTTCAAGTTGT 59.178 47.619 2.11 0.0 32.92 3.32 F
5640 6390 1.063492 TGGCCCGAAGAGGTATGACTA 60.063 52.381 0.00 0.0 38.74 2.59 F
6511 7263 0.809636 ACCGTTTGCTTTTTGCTGCC 60.810 50.000 0.00 0.0 43.37 4.85 F
7064 7816 0.831711 AGGCAACCCAATGTGGAACC 60.832 55.000 0.00 0.0 40.96 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1891 2135 0.036164 TCCACCCAACATTCTCCACG 59.964 55.000 0.00 0.00 0.00 4.94 R
2427 3045 0.252330 TCCCGTATTCACCACCCTCA 60.252 55.000 0.00 0.00 0.00 3.86 R
2618 3241 0.870393 ATGCAGAGTTGACTTGCACG 59.130 50.000 17.10 0.00 38.37 5.34 R
3376 4008 0.178975 ACCGGAACCTGCAATCCAAA 60.179 50.000 9.46 0.00 35.34 3.28 R
4153 4794 0.031721 AGGTCGTGACGAACCAAGTC 59.968 55.000 20.52 0.00 45.54 3.01 R
4969 5640 2.453983 AAACATCAACGCCCCATTTG 57.546 45.000 0.00 0.00 0.00 2.32 R
5320 6014 3.010624 TCACAAACAACGGCAATGATG 57.989 42.857 0.00 0.00 0.00 3.07 R
6407 7159 3.169355 CCATTTTCTGTAATGGCAGCC 57.831 47.619 3.66 3.66 45.75 4.85 R
6909 7661 0.248498 ACGACATCCGATGTAGTGCG 60.248 55.000 22.06 18.44 45.37 5.34 R
7339 8091 0.250234 TTCCTCTTGCCATCACCTCG 59.750 55.000 0.00 0.00 0.00 4.63 R
8688 9547 0.035152 AGATCGCACAATCTGGCCAA 60.035 50.000 7.01 0.00 34.68 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.069775 TTTTCCTTTAGTCGCCCCCT 58.930 50.000 0.00 0.00 0.00 4.79
24 25 1.955451 TTCCTTTAGTCGCCCCCTTA 58.045 50.000 0.00 0.00 0.00 2.69
25 26 1.955451 TCCTTTAGTCGCCCCCTTAA 58.045 50.000 0.00 0.00 0.00 1.85
26 27 1.556451 TCCTTTAGTCGCCCCCTTAAC 59.444 52.381 0.00 0.00 0.00 2.01
27 28 1.407851 CCTTTAGTCGCCCCCTTAACC 60.408 57.143 0.00 0.00 0.00 2.85
30 31 2.474133 TAGTCGCCCCCTTAACCCCA 62.474 60.000 0.00 0.00 0.00 4.96
31 32 2.532199 TCGCCCCCTTAACCCCAA 60.532 61.111 0.00 0.00 0.00 4.12
37 41 2.829335 GCCCCCTTAACCCCAATTTTCT 60.829 50.000 0.00 0.00 0.00 2.52
38 42 2.837591 CCCCCTTAACCCCAATTTTCTG 59.162 50.000 0.00 0.00 0.00 3.02
51 55 4.077822 CAATTTTCTGAGTTCCTGCCTCT 58.922 43.478 0.00 0.00 0.00 3.69
57 61 0.972883 GAGTTCCTGCCTCTGTCACT 59.027 55.000 0.00 0.00 0.00 3.41
62 66 0.673022 CCTGCCTCTGTCACTGCTTC 60.673 60.000 0.00 0.00 0.00 3.86
64 68 1.123861 TGCCTCTGTCACTGCTTCCT 61.124 55.000 0.00 0.00 0.00 3.36
69 73 3.055530 CCTCTGTCACTGCTTCCTGTTAT 60.056 47.826 0.00 0.00 0.00 1.89
75 79 5.178623 TGTCACTGCTTCCTGTTATTTTACG 59.821 40.000 0.00 0.00 0.00 3.18
89 93 9.453325 CTGTTATTTTACGTGTTGGTTAATTGT 57.547 29.630 0.00 0.00 0.00 2.71
110 114 7.522901 TTGTTTCATTCACTCAATGTTGTTG 57.477 32.000 0.00 0.00 42.47 3.33
113 117 7.700234 TGTTTCATTCACTCAATGTTGTTGTAC 59.300 33.333 0.00 0.00 42.47 2.90
114 118 6.934048 TCATTCACTCAATGTTGTTGTACA 57.066 33.333 0.00 0.00 42.47 2.90
115 119 7.326968 TCATTCACTCAATGTTGTTGTACAA 57.673 32.000 3.59 3.59 42.47 2.41
131 135 7.770201 TGTTGTACAAATTGTATAGCATGCAT 58.230 30.769 21.98 13.55 32.28 3.96
132 136 8.897752 TGTTGTACAAATTGTATAGCATGCATA 58.102 29.630 21.98 12.53 32.28 3.14
133 137 9.169468 GTTGTACAAATTGTATAGCATGCATAC 57.831 33.333 21.98 22.44 35.05 2.39
140 144 4.055360 TGTATAGCATGCATACGTTGTCC 58.945 43.478 21.98 3.28 32.55 4.02
141 145 2.979814 TAGCATGCATACGTTGTCCT 57.020 45.000 21.98 0.00 0.00 3.85
142 146 1.372582 AGCATGCATACGTTGTCCTG 58.627 50.000 21.98 0.00 0.00 3.86
175 179 2.356278 GAGGGCAGGCCATTCACA 59.644 61.111 16.94 0.00 37.98 3.58
198 202 5.509498 ACACATATATTGTTGGGTGAAGCT 58.491 37.500 5.81 0.00 36.00 3.74
222 227 1.562575 GCGTAGTTTGTGTGGGACGG 61.563 60.000 0.00 0.00 0.00 4.79
240 245 1.002868 GCATGTGCCAGGTCTGACT 60.003 57.895 7.85 0.00 34.31 3.41
241 246 0.250234 GCATGTGCCAGGTCTGACTA 59.750 55.000 7.85 0.00 34.31 2.59
255 260 8.465999 CCAGGTCTGACTATAGTATCATTGATC 58.534 40.741 5.09 0.00 0.00 2.92
284 290 5.350091 ACGGGTGATTTTGAAAAACTTGTTG 59.650 36.000 0.00 0.00 0.00 3.33
313 319 7.072177 TCTGATTATGTCGTTGAATTTGACC 57.928 36.000 0.00 0.00 0.00 4.02
332 338 3.223435 ACCTATCGGTGTACCAGAGATG 58.777 50.000 1.50 0.00 43.51 2.90
339 345 3.146066 GGTGTACCAGAGATGTTTGCAA 58.854 45.455 0.00 0.00 35.64 4.08
342 348 2.283145 ACCAGAGATGTTTGCAAGCT 57.717 45.000 14.67 4.06 0.00 3.74
348 354 5.403466 CCAGAGATGTTTGCAAGCTTTTTAC 59.597 40.000 14.67 1.53 0.00 2.01
355 361 5.978919 TGTTTGCAAGCTTTTTACAGATGAG 59.021 36.000 14.67 0.00 0.00 2.90
358 374 5.522456 TGCAAGCTTTTTACAGATGAGTTG 58.478 37.500 0.00 0.00 0.00 3.16
384 400 0.948678 TACTTTGAGTGTTTGCGGGC 59.051 50.000 0.00 0.00 0.00 6.13
388 404 1.733402 TTGAGTGTTTGCGGGCTTGG 61.733 55.000 0.00 0.00 0.00 3.61
391 407 1.142965 GTGTTTGCGGGCTTGGTTT 59.857 52.632 0.00 0.00 0.00 3.27
398 414 0.524414 GCGGGCTTGGTTTATTTCGT 59.476 50.000 0.00 0.00 0.00 3.85
399 415 1.466866 GCGGGCTTGGTTTATTTCGTC 60.467 52.381 0.00 0.00 0.00 4.20
400 416 1.131693 CGGGCTTGGTTTATTTCGTCC 59.868 52.381 0.00 0.00 0.00 4.79
401 417 1.131693 GGGCTTGGTTTATTTCGTCCG 59.868 52.381 0.00 0.00 0.00 4.79
402 418 1.808343 GGCTTGGTTTATTTCGTCCGT 59.192 47.619 0.00 0.00 0.00 4.69
405 421 4.083377 GGCTTGGTTTATTTCGTCCGTTTA 60.083 41.667 0.00 0.00 0.00 2.01
406 422 5.392272 GGCTTGGTTTATTTCGTCCGTTTAT 60.392 40.000 0.00 0.00 0.00 1.40
407 423 5.510323 GCTTGGTTTATTTCGTCCGTTTATG 59.490 40.000 0.00 0.00 0.00 1.90
408 424 6.557291 TTGGTTTATTTCGTCCGTTTATGT 57.443 33.333 0.00 0.00 0.00 2.29
409 425 7.623925 GCTTGGTTTATTTCGTCCGTTTATGTA 60.624 37.037 0.00 0.00 0.00 2.29
410 426 7.664082 TGGTTTATTTCGTCCGTTTATGTAA 57.336 32.000 0.00 0.00 0.00 2.41
411 427 7.741198 TGGTTTATTTCGTCCGTTTATGTAAG 58.259 34.615 0.00 0.00 0.00 2.34
443 459 9.550811 GAAATATCGTCCGTTTTCTGTAAAATT 57.449 29.630 0.00 0.00 36.96 1.82
444 460 8.889849 AATATCGTCCGTTTTCTGTAAAATTG 57.110 30.769 0.00 0.00 36.96 2.32
450 466 7.571613 CGTCCGTTTTCTGTAAAATTGTATCCA 60.572 37.037 0.00 0.00 36.96 3.41
458 474 8.662781 TCTGTAAAATTGTATCCATACTCTGC 57.337 34.615 0.00 0.00 34.41 4.26
480 496 4.813027 CTGAACTCCATGGTTTTTGATGG 58.187 43.478 12.58 0.00 40.61 3.51
482 498 4.898265 TGAACTCCATGGTTTTTGATGGAA 59.102 37.500 12.58 0.00 45.99 3.53
483 499 5.543405 TGAACTCCATGGTTTTTGATGGAAT 59.457 36.000 12.58 0.00 45.99 3.01
484 500 5.665916 ACTCCATGGTTTTTGATGGAATC 57.334 39.130 12.58 0.00 45.99 2.52
485 501 4.467438 ACTCCATGGTTTTTGATGGAATCC 59.533 41.667 12.58 0.00 45.99 3.01
500 518 2.491693 GGAATCCATCCGCTTTTTGTCA 59.508 45.455 0.00 0.00 38.79 3.58
507 525 5.475220 TCCATCCGCTTTTTGTCAAAATCTA 59.525 36.000 11.44 0.00 31.28 1.98
509 527 6.349280 CCATCCGCTTTTTGTCAAAATCTAGA 60.349 38.462 11.44 0.00 31.28 2.43
511 529 6.842163 TCCGCTTTTTGTCAAAATCTAGATC 58.158 36.000 11.44 0.00 31.28 2.75
525 543 5.644977 ATCTAGATCGAAATACATGCGGA 57.355 39.130 0.00 0.00 0.00 5.54
526 544 4.795268 TCTAGATCGAAATACATGCGGAC 58.205 43.478 0.00 0.00 0.00 4.79
527 545 3.452755 AGATCGAAATACATGCGGACA 57.547 42.857 0.00 0.00 0.00 4.02
528 546 3.995199 AGATCGAAATACATGCGGACAT 58.005 40.909 0.00 0.00 36.79 3.06
587 627 3.537874 GGATACGAGGGCCAGCGT 61.538 66.667 24.14 24.14 43.86 5.07
588 628 2.499685 GATACGAGGGCCAGCGTT 59.500 61.111 25.46 15.11 41.49 4.84
608 648 0.676184 GGAGATGCGCTGACCATCTA 59.324 55.000 9.73 0.00 46.88 1.98
611 651 0.249615 GATGCGCTGACCATCTAGCA 60.250 55.000 9.73 0.00 39.87 3.49
612 652 0.178767 ATGCGCTGACCATCTAGCAA 59.821 50.000 9.73 0.00 39.87 3.91
613 653 0.178767 TGCGCTGACCATCTAGCAAT 59.821 50.000 9.73 0.00 39.87 3.56
614 654 1.303309 GCGCTGACCATCTAGCAATT 58.697 50.000 0.00 0.00 39.87 2.32
615 655 1.262683 GCGCTGACCATCTAGCAATTC 59.737 52.381 0.00 0.00 39.87 2.17
616 656 2.831333 CGCTGACCATCTAGCAATTCT 58.169 47.619 0.00 0.00 39.87 2.40
617 657 2.543012 CGCTGACCATCTAGCAATTCTG 59.457 50.000 0.00 0.00 39.87 3.02
632 672 3.675348 ATTCTGCCATGGGAGATGAAA 57.325 42.857 33.51 20.70 42.00 2.69
650 690 8.857694 AGATGAAATGCATTTTCTTTTCCATT 57.142 26.923 24.81 10.02 43.50 3.16
651 691 8.726988 AGATGAAATGCATTTTCTTTTCCATTG 58.273 29.630 24.81 0.00 43.50 2.82
671 711 7.552687 TCCATTGATACCACTTAGAATGTTGTC 59.447 37.037 0.00 0.00 0.00 3.18
674 714 5.867174 TGATACCACTTAGAATGTTGTCGTG 59.133 40.000 0.00 0.00 0.00 4.35
685 725 3.513462 TGTTGTCGTGTAAGCGAATTG 57.487 42.857 0.00 0.00 42.82 2.32
686 726 2.867368 TGTTGTCGTGTAAGCGAATTGT 59.133 40.909 0.00 0.00 42.82 2.71
687 727 3.310227 TGTTGTCGTGTAAGCGAATTGTT 59.690 39.130 0.00 0.00 42.82 2.83
688 728 3.513462 TGTCGTGTAAGCGAATTGTTG 57.487 42.857 0.00 0.00 42.82 3.33
694 734 2.946329 TGTAAGCGAATTGTTGTGTGGT 59.054 40.909 0.00 0.00 0.00 4.16
696 736 3.518634 AAGCGAATTGTTGTGTGGTTT 57.481 38.095 0.00 0.00 0.00 3.27
698 738 1.857837 GCGAATTGTTGTGTGGTTTGG 59.142 47.619 0.00 0.00 0.00 3.28
699 739 2.480416 GCGAATTGTTGTGTGGTTTGGA 60.480 45.455 0.00 0.00 0.00 3.53
700 740 3.798548 GCGAATTGTTGTGTGGTTTGGAT 60.799 43.478 0.00 0.00 0.00 3.41
701 741 3.735240 CGAATTGTTGTGTGGTTTGGATG 59.265 43.478 0.00 0.00 0.00 3.51
702 742 4.498850 CGAATTGTTGTGTGGTTTGGATGA 60.499 41.667 0.00 0.00 0.00 2.92
703 743 5.540911 GAATTGTTGTGTGGTTTGGATGAT 58.459 37.500 0.00 0.00 0.00 2.45
722 762 1.403814 TCACGAGGCCTCTAGGATTG 58.596 55.000 29.73 14.98 37.39 2.67
743 783 8.619546 GGATTGAATCAAGTCTAAATCCTTCAG 58.380 37.037 7.56 0.00 39.85 3.02
744 784 9.171877 GATTGAATCAAGTCTAAATCCTTCAGT 57.828 33.333 1.10 0.00 0.00 3.41
745 785 8.553459 TTGAATCAAGTCTAAATCCTTCAGTC 57.447 34.615 0.00 0.00 0.00 3.51
746 786 7.106239 TGAATCAAGTCTAAATCCTTCAGTCC 58.894 38.462 0.00 0.00 0.00 3.85
747 787 5.073311 TCAAGTCTAAATCCTTCAGTCCG 57.927 43.478 0.00 0.00 0.00 4.79
748 788 3.528597 AGTCTAAATCCTTCAGTCCGC 57.471 47.619 0.00 0.00 0.00 5.54
749 789 3.100671 AGTCTAAATCCTTCAGTCCGCT 58.899 45.455 0.00 0.00 0.00 5.52
750 790 3.131400 AGTCTAAATCCTTCAGTCCGCTC 59.869 47.826 0.00 0.00 0.00 5.03
751 791 3.096852 TCTAAATCCTTCAGTCCGCTCA 58.903 45.455 0.00 0.00 0.00 4.26
752 792 2.859165 AAATCCTTCAGTCCGCTCAA 57.141 45.000 0.00 0.00 0.00 3.02
753 793 2.100605 AATCCTTCAGTCCGCTCAAC 57.899 50.000 0.00 0.00 0.00 3.18
754 794 0.976641 ATCCTTCAGTCCGCTCAACA 59.023 50.000 0.00 0.00 0.00 3.33
755 795 0.033504 TCCTTCAGTCCGCTCAACAC 59.966 55.000 0.00 0.00 0.00 3.32
756 796 0.034059 CCTTCAGTCCGCTCAACACT 59.966 55.000 0.00 0.00 0.00 3.55
757 797 1.541233 CCTTCAGTCCGCTCAACACTT 60.541 52.381 0.00 0.00 0.00 3.16
758 798 2.213499 CTTCAGTCCGCTCAACACTTT 58.787 47.619 0.00 0.00 0.00 2.66
759 799 3.390135 CTTCAGTCCGCTCAACACTTTA 58.610 45.455 0.00 0.00 0.00 1.85
766 806 7.820386 TCAGTCCGCTCAACACTTTATTAATAA 59.180 33.333 3.71 3.71 0.00 1.40
767 807 8.447833 CAGTCCGCTCAACACTTTATTAATAAA 58.552 33.333 17.54 17.54 0.00 1.40
815 855 1.973812 GCACCTGACCTTTCCTGGC 60.974 63.158 0.00 0.00 0.00 4.85
824 864 2.672996 TTTCCTGGCAGCGAAGGC 60.673 61.111 9.56 0.00 40.37 4.35
1014 1090 2.260844 TATGTATGAAGCTGCTGCCC 57.739 50.000 12.44 5.34 40.80 5.36
1068 1159 4.608774 TCCTCCCACCACCGTCGT 62.609 66.667 0.00 0.00 0.00 4.34
1174 1280 4.057428 GCTGCTCGTCGTCCACCT 62.057 66.667 0.00 0.00 0.00 4.00
1344 1484 6.262049 TCTCACTTGTTTGAAATCGGAATTCA 59.738 34.615 7.93 4.41 35.11 2.57
1354 1494 1.079127 CGGAATTCACGAGGCCTGT 60.079 57.895 12.00 5.90 0.00 4.00
1362 1502 4.644103 TTCACGAGGCCTGTATAGTTAC 57.356 45.455 12.00 0.00 0.00 2.50
1364 1504 3.881688 TCACGAGGCCTGTATAGTTACTC 59.118 47.826 12.00 0.00 0.00 2.59
1413 1553 3.537206 GAGATTCCGGGGATGCGGG 62.537 68.421 0.00 0.00 0.00 6.13
1456 1606 4.061596 GGGCTGCTGATGAGTAGATTTAC 58.938 47.826 0.59 0.00 33.93 2.01
1642 1857 8.681806 GGGTATAGATAGATTCGGGTACTTTAC 58.318 40.741 0.00 0.00 0.00 2.01
1653 1868 4.458295 TCGGGTACTTTACTCAAGACAGAG 59.542 45.833 0.00 0.00 41.44 3.35
1657 1875 3.996480 ACTTTACTCAAGACAGAGGTGC 58.004 45.455 0.00 0.00 39.97 5.01
1708 1927 6.677781 TCTTTGGTTTGAAGTAGTGAAGTG 57.322 37.500 0.00 0.00 0.00 3.16
1750 1976 1.825474 AGTCGTGCCACTGCTAACTAT 59.175 47.619 0.00 0.00 38.71 2.12
1759 1985 4.515567 GCCACTGCTAACTATTGGTTATCC 59.484 45.833 0.00 0.00 39.36 2.59
1773 1999 1.476488 GTTATCCGCCACCATTTTGCT 59.524 47.619 0.00 0.00 0.00 3.91
1849 2076 4.001248 CCAATCAGCCGGCAAAGA 57.999 55.556 31.54 23.21 0.00 2.52
1855 2082 1.398692 TCAGCCGGCAAAGAAAAAGT 58.601 45.000 31.54 0.00 0.00 2.66
1912 2156 2.593026 GTGGAGAATGTTGGGTGGAAA 58.407 47.619 0.00 0.00 0.00 3.13
1916 2160 2.558359 GAGAATGTTGGGTGGAAACAGG 59.442 50.000 0.00 0.00 44.46 4.00
1924 2168 2.281484 TGGAAACAGGCACGGAGC 60.281 61.111 0.00 0.00 37.89 4.70
2338 2953 7.616103 TGTTTTGTTAATGCATTACACTTCG 57.384 32.000 18.70 0.00 0.00 3.79
2375 2993 4.206375 TCATCTTGTTGCTTGTCTTTCCA 58.794 39.130 0.00 0.00 0.00 3.53
2399 3017 2.187958 AGGTACTGAGCATGCCTACAA 58.812 47.619 15.66 0.00 37.18 2.41
2427 3045 1.690985 GACCAGCCTCCCTAAGCCT 60.691 63.158 0.00 0.00 0.00 4.58
2451 3069 3.093814 GGGTGGTGAATACGGGAAATTT 58.906 45.455 0.00 0.00 0.00 1.82
2484 3102 4.019174 CTGCACTAAATGACCCAAGGATT 58.981 43.478 0.00 0.00 0.00 3.01
2618 3241 5.469084 CCTAGACTTGGGAAAACTGTAACAC 59.531 44.000 0.00 0.00 0.00 3.32
2878 3509 4.383052 GTCAGTGTTGTTATCAGACTGACG 59.617 45.833 20.94 0.00 45.15 4.35
2963 3594 3.031736 AGCTATCCGTAACTGTGATGGT 58.968 45.455 3.29 0.00 0.00 3.55
3094 3725 7.815840 TGAACTGAAACATTGACAGGAAATA 57.184 32.000 0.00 0.00 36.17 1.40
3105 3736 4.900684 TGACAGGAAATATCACGGTTTCA 58.099 39.130 0.00 0.00 36.34 2.69
3113 3744 0.887933 ATCACGGTTTCAATGTGCCC 59.112 50.000 0.00 0.00 33.69 5.36
3182 3813 2.355513 CCCAGCAGTTGTAGATCTTGCT 60.356 50.000 12.15 12.15 0.00 3.91
3408 4040 3.118371 AGGTTCCGGTGGATCTTGTTATC 60.118 47.826 0.00 0.00 0.00 1.75
3411 4043 2.963101 TCCGGTGGATCTTGTTATCGAT 59.037 45.455 2.16 2.16 0.00 3.59
3531 4163 0.827507 GGGGCTCAACTGCTTTCCAA 60.828 55.000 0.00 0.00 0.00 3.53
3605 4237 3.653344 GTGCTGGGTCAAAGGAATTTTC 58.347 45.455 0.00 0.00 0.00 2.29
3872 4512 4.712476 AGCTCTGCCAACCTCAATAATAG 58.288 43.478 0.00 0.00 0.00 1.73
3916 4556 5.324409 AGAGGGAAAAATGCACTAATGACA 58.676 37.500 0.00 0.00 0.00 3.58
4000 4641 6.295039 TGCTTTTCCTTAAAACAGTCTACG 57.705 37.500 0.00 0.00 31.37 3.51
4004 4645 7.473027 TTTTCCTTAAAACAGTCTACGTCAG 57.527 36.000 0.00 0.00 29.59 3.51
4128 4769 1.533756 CCCACTTGTTCTGTTTGCACG 60.534 52.381 0.00 0.00 0.00 5.34
4150 4791 4.380444 CGTTTATGGAATGAACTGGGTTGG 60.380 45.833 0.00 0.00 40.32 3.77
4152 4793 2.765689 TGGAATGAACTGGGTTGGTT 57.234 45.000 0.00 0.00 0.00 3.67
4153 4794 2.315176 TGGAATGAACTGGGTTGGTTG 58.685 47.619 0.00 0.00 0.00 3.77
4226 4875 1.526917 GGATTGAGGCATCCCACCG 60.527 63.158 0.00 0.00 0.00 4.94
4436 5094 1.822371 GTGTGGTTGGGTTCAAGTTGT 59.178 47.619 2.11 0.00 32.92 3.32
4556 5217 4.578516 TCCATGGTAAGTATCCATTTTGCG 59.421 41.667 12.58 0.00 42.92 4.85
4825 5496 7.466804 ACTCTTTTACCCATTCCATAACTTCA 58.533 34.615 0.00 0.00 0.00 3.02
4969 5640 3.677700 GCAAATAATCCCCGTGTTTTCCC 60.678 47.826 0.00 0.00 0.00 3.97
5021 5714 2.524306 CCACCACACCACCACAATATT 58.476 47.619 0.00 0.00 0.00 1.28
5048 5741 3.005050 CAGTGTGTTCCATGTGCAATTCT 59.995 43.478 0.00 0.00 0.00 2.40
5253 5947 5.709164 GCTATTGAGGTGGAATATTGCTCAT 59.291 40.000 8.53 2.11 0.00 2.90
5320 6014 5.070313 TCCTGGCCATTATTTTCTTATTGCC 59.930 40.000 5.51 0.00 0.00 4.52
5345 6039 5.159925 TCATTGCCGTTGTTTGTGATATTG 58.840 37.500 0.00 0.00 0.00 1.90
5640 6390 1.063492 TGGCCCGAAGAGGTATGACTA 60.063 52.381 0.00 0.00 38.74 2.59
5641 6391 2.249139 GGCCCGAAGAGGTATGACTAT 58.751 52.381 0.00 0.00 38.74 2.12
5813 6565 5.705441 TGGTTTCAAGGTAAGCTGTTATCTG 59.295 40.000 0.00 0.00 29.40 2.90
6015 6767 1.412343 ACAAACACATCAAACCCCAGC 59.588 47.619 0.00 0.00 0.00 4.85
6240 6992 6.109156 TGCTAAAGAGGTATCTTGTTGTCA 57.891 37.500 0.00 0.00 45.25 3.58
6293 7045 7.664731 TGGCATGTTTGAATAAATTTTGGTGAT 59.335 29.630 0.00 0.00 0.00 3.06
6407 7159 4.747108 GGTGAACTCCATGAATCTGTATCG 59.253 45.833 0.00 0.00 0.00 2.92
6511 7263 0.809636 ACCGTTTGCTTTTTGCTGCC 60.810 50.000 0.00 0.00 43.37 4.85
6787 7539 2.247358 GGAGTTGGAAAGGATGGCAAA 58.753 47.619 0.00 0.00 0.00 3.68
6884 7636 9.480053 CTTCATCCTTTTGTGTGTAAAATCATT 57.520 29.630 0.00 0.00 0.00 2.57
6893 7645 7.575414 TGTGTGTAAAATCATTACCTGTTGT 57.425 32.000 0.00 0.00 0.00 3.32
6895 7647 7.918033 TGTGTGTAAAATCATTACCTGTTGTTG 59.082 33.333 0.00 0.00 0.00 3.33
6909 7661 1.808531 TTGTTGTCATGCTGCCTGCC 61.809 55.000 0.00 0.00 42.00 4.85
7064 7816 0.831711 AGGCAACCCAATGTGGAACC 60.832 55.000 0.00 0.00 40.96 3.62
7111 7863 5.627735 GCTCTACTCATGGGATTCAAACTCA 60.628 44.000 0.00 0.00 0.00 3.41
7126 7878 4.988540 TCAAACTCAACTTACATCCACGAG 59.011 41.667 0.00 0.00 0.00 4.18
7129 7881 1.066430 TCAACTTACATCCACGAGCCC 60.066 52.381 0.00 0.00 0.00 5.19
7195 7947 1.461127 GTGAAGAACGCCTACTGCTTG 59.539 52.381 0.00 0.00 38.05 4.01
7255 8007 3.138798 GCAGGCAGCATCCACAGG 61.139 66.667 0.00 0.00 44.79 4.00
7306 8058 2.267961 GGCGTGGACCGGAAAGAT 59.732 61.111 9.46 0.00 36.94 2.40
7312 8064 2.747446 CGTGGACCGGAAAGATTTCAAT 59.253 45.455 9.46 0.00 38.92 2.57
7315 8067 3.438781 TGGACCGGAAAGATTTCAATTCG 59.561 43.478 9.46 2.06 38.92 3.34
7459 8211 2.462456 AGCTCTCTGTTTTCGATGCA 57.538 45.000 0.00 0.00 0.00 3.96
7469 8221 0.107897 TTTCGATGCAGCCACGGTAT 60.108 50.000 0.00 0.00 0.00 2.73
7691 8443 7.676683 TTAGTGGCTTATATTTCAGTCCTCT 57.323 36.000 0.00 0.00 0.00 3.69
7707 8461 7.872138 TCAGTCCTCTTACATATTTGGGAAAT 58.128 34.615 0.00 0.00 34.90 2.17
7717 8471 6.738114 ACATATTTGGGAAATAACAGCATCG 58.262 36.000 0.00 0.00 36.95 3.84
8035 8882 5.069648 TGGATCTTTGCTATCAGTCCTACAG 59.930 44.000 0.00 0.00 0.00 2.74
8053 8900 8.349983 GTCCTACAGTTTTGTATGAATTGTGTT 58.650 33.333 0.00 0.00 39.00 3.32
8063 8910 7.843490 TGTATGAATTGTGTTAGTTAGGAGC 57.157 36.000 0.00 0.00 0.00 4.70
8077 8924 2.283824 GGAGCTTCTCCGTTGGGTA 58.716 57.895 0.00 0.00 41.08 3.69
8078 8925 0.108281 GGAGCTTCTCCGTTGGGTAC 60.108 60.000 0.00 0.00 41.08 3.34
8079 8926 0.896226 GAGCTTCTCCGTTGGGTACT 59.104 55.000 0.00 0.00 33.83 2.73
8080 8927 1.275573 GAGCTTCTCCGTTGGGTACTT 59.724 52.381 0.00 0.00 33.83 2.24
8081 8928 1.002087 AGCTTCTCCGTTGGGTACTTG 59.998 52.381 0.00 0.00 33.83 3.16
8082 8929 1.944430 GCTTCTCCGTTGGGTACTTGG 60.944 57.143 0.00 0.00 33.83 3.61
8211 9058 1.826487 ACACACCCTTTCCGCCAAC 60.826 57.895 0.00 0.00 0.00 3.77
8294 9146 4.590918 TGTGGCCTTATGAATAAACCGAA 58.409 39.130 3.32 0.00 0.00 4.30
8300 9152 8.750298 TGGCCTTATGAATAAACCGAAAATAAA 58.250 29.630 3.32 0.00 0.00 1.40
8340 9193 1.003262 CGTGGGCGCAAGTTGATTTG 61.003 55.000 10.83 0.00 41.68 2.32
8342 9195 0.031857 TGGGCGCAAGTTGATTTGTG 59.968 50.000 10.83 0.00 40.59 3.33
8357 9211 0.898320 TTGTGGGTGTTTGGTTGTGG 59.102 50.000 0.00 0.00 0.00 4.17
8388 9242 2.989840 CGTGTGGTCATTCTGAAGAGAC 59.010 50.000 14.06 14.06 0.00 3.36
8391 9245 4.629200 GTGTGGTCATTCTGAAGAGACATC 59.371 45.833 20.35 14.71 32.79 3.06
8419 9273 6.540438 TGTGGAGGATTAAAATCGTAGAGT 57.460 37.500 0.00 0.00 43.63 3.24
8420 9274 6.570692 TGTGGAGGATTAAAATCGTAGAGTC 58.429 40.000 0.00 0.00 43.63 3.36
8421 9275 6.380274 TGTGGAGGATTAAAATCGTAGAGTCT 59.620 38.462 0.00 0.00 43.63 3.24
8441 9295 1.339610 TGGTGTACATTGCTTTGTGCC 59.660 47.619 0.00 0.00 42.00 5.01
8443 9297 2.223923 GGTGTACATTGCTTTGTGCCAA 60.224 45.455 0.00 0.00 42.00 4.52
8481 9335 6.944862 ACTGATAGCAATCTGGAGTTCTTTTT 59.055 34.615 0.00 0.00 35.85 1.94
8511 9366 1.661341 CTCACCAATCTACTGCCTGC 58.339 55.000 0.00 0.00 0.00 4.85
8530 9385 4.161565 CCTGCCTTTACATACCTGTAGTGA 59.838 45.833 0.00 0.00 39.00 3.41
8583 9440 1.430632 CACGGATGCATGCACTTCC 59.569 57.895 25.37 24.93 0.00 3.46
8584 9441 2.711311 CGGATGCATGCACTTCCG 59.289 61.111 35.45 35.45 46.65 4.30
8585 9442 3.113745 GGATGCATGCACTTCCGG 58.886 61.111 25.37 0.00 0.00 5.14
8589 9446 0.527565 ATGCATGCACTTCCGGTTTC 59.472 50.000 25.37 0.00 0.00 2.78
8591 9448 0.598065 GCATGCACTTCCGGTTTCTT 59.402 50.000 14.21 0.00 0.00 2.52
8592 9449 1.000274 GCATGCACTTCCGGTTTCTTT 60.000 47.619 14.21 0.00 0.00 2.52
8594 9451 3.308530 CATGCACTTCCGGTTTCTTTTC 58.691 45.455 0.00 0.00 0.00 2.29
8597 9454 3.066203 TGCACTTCCGGTTTCTTTTCTTC 59.934 43.478 0.00 0.00 0.00 2.87
8601 9458 5.915196 CACTTCCGGTTTCTTTTCTTCATTC 59.085 40.000 0.00 0.00 0.00 2.67
8624 9483 3.504520 TGTCCCTTGCTTTATTTTCGTCC 59.495 43.478 0.00 0.00 0.00 4.79
8693 9552 8.043113 TCACATATTCTGATATAGTCATTGGCC 58.957 37.037 0.00 0.00 35.97 5.36
8703 9562 0.179156 GTCATTGGCCAGATTGTGCG 60.179 55.000 5.11 0.00 0.00 5.34
8726 9585 5.810587 CGATCTCCTTTACCATTTCTTCGAA 59.189 40.000 0.00 0.00 0.00 3.71
8727 9586 6.480320 CGATCTCCTTTACCATTTCTTCGAAT 59.520 38.462 0.00 0.00 0.00 3.34
8728 9587 7.306866 CGATCTCCTTTACCATTTCTTCGAATC 60.307 40.741 0.00 0.00 0.00 2.52
8729 9588 5.810587 TCTCCTTTACCATTTCTTCGAATCG 59.189 40.000 0.00 0.00 0.00 3.34
8730 9589 5.484715 TCCTTTACCATTTCTTCGAATCGT 58.515 37.500 1.52 0.00 0.00 3.73
8731 9590 5.935789 TCCTTTACCATTTCTTCGAATCGTT 59.064 36.000 1.52 0.00 0.00 3.85
8732 9591 7.098477 TCCTTTACCATTTCTTCGAATCGTTA 58.902 34.615 1.52 0.00 0.00 3.18
8733 9592 7.603404 TCCTTTACCATTTCTTCGAATCGTTAA 59.397 33.333 1.52 0.00 0.00 2.01
8734 9593 7.691050 CCTTTACCATTTCTTCGAATCGTTAAC 59.309 37.037 1.52 0.00 0.00 2.01
8735 9594 7.655236 TTACCATTTCTTCGAATCGTTAACA 57.345 32.000 6.39 0.00 0.00 2.41
8736 9595 6.737254 ACCATTTCTTCGAATCGTTAACAT 57.263 33.333 6.39 0.00 0.00 2.71
8737 9596 7.837202 ACCATTTCTTCGAATCGTTAACATA 57.163 32.000 6.39 0.00 0.00 2.29
8738 9597 8.433421 ACCATTTCTTCGAATCGTTAACATAT 57.567 30.769 6.39 0.00 0.00 1.78
8739 9598 9.537192 ACCATTTCTTCGAATCGTTAACATATA 57.463 29.630 6.39 0.00 0.00 0.86
8741 9600 9.517361 CATTTCTTCGAATCGTTAACATATAGC 57.483 33.333 6.39 0.00 0.00 2.97
8742 9601 7.633361 TTCTTCGAATCGTTAACATATAGCC 57.367 36.000 6.39 0.00 0.00 3.93
8743 9602 6.978338 TCTTCGAATCGTTAACATATAGCCT 58.022 36.000 6.39 0.00 0.00 4.58
8744 9603 6.861572 TCTTCGAATCGTTAACATATAGCCTG 59.138 38.462 6.39 0.00 0.00 4.85
8745 9604 6.321848 TCGAATCGTTAACATATAGCCTGA 57.678 37.500 6.39 0.00 0.00 3.86
8746 9605 6.379386 TCGAATCGTTAACATATAGCCTGAG 58.621 40.000 6.39 0.00 0.00 3.35
8747 9606 5.573282 CGAATCGTTAACATATAGCCTGAGG 59.427 44.000 6.39 0.00 0.00 3.86
8748 9607 6.569801 CGAATCGTTAACATATAGCCTGAGGA 60.570 42.308 0.65 0.00 0.00 3.71
8749 9608 5.707242 TCGTTAACATATAGCCTGAGGAG 57.293 43.478 0.65 0.00 0.00 3.69
8750 9609 5.138276 TCGTTAACATATAGCCTGAGGAGT 58.862 41.667 0.65 0.00 0.00 3.85
8751 9610 5.597182 TCGTTAACATATAGCCTGAGGAGTT 59.403 40.000 0.65 0.00 0.00 3.01
8752 9611 5.692204 CGTTAACATATAGCCTGAGGAGTTG 59.308 44.000 0.65 0.00 0.00 3.16
8753 9612 6.461092 CGTTAACATATAGCCTGAGGAGTTGA 60.461 42.308 0.65 0.00 0.00 3.18
8754 9613 5.543507 AACATATAGCCTGAGGAGTTGAG 57.456 43.478 0.65 0.00 0.00 3.02
8755 9614 3.900601 ACATATAGCCTGAGGAGTTGAGG 59.099 47.826 0.65 0.00 0.00 3.86
8756 9615 2.559381 ATAGCCTGAGGAGTTGAGGT 57.441 50.000 0.65 0.00 0.00 3.85
8757 9616 2.327325 TAGCCTGAGGAGTTGAGGTT 57.673 50.000 0.65 0.00 0.00 3.50
8758 9617 1.439543 AGCCTGAGGAGTTGAGGTTT 58.560 50.000 0.65 0.00 0.00 3.27
8759 9618 1.349357 AGCCTGAGGAGTTGAGGTTTC 59.651 52.381 0.65 0.00 0.00 2.78
8760 9619 1.072331 GCCTGAGGAGTTGAGGTTTCA 59.928 52.381 0.65 0.00 0.00 2.69
8761 9620 2.772287 CCTGAGGAGTTGAGGTTTCAC 58.228 52.381 0.00 0.00 31.71 3.18
8762 9621 2.408050 CTGAGGAGTTGAGGTTTCACG 58.592 52.381 0.00 0.00 31.71 4.35
8763 9622 1.149148 GAGGAGTTGAGGTTTCACGC 58.851 55.000 0.00 0.00 31.71 5.34
8764 9623 0.759346 AGGAGTTGAGGTTTCACGCT 59.241 50.000 0.00 0.00 31.71 5.07
8765 9624 1.141053 AGGAGTTGAGGTTTCACGCTT 59.859 47.619 0.00 0.00 31.71 4.68
8766 9625 1.947456 GGAGTTGAGGTTTCACGCTTT 59.053 47.619 0.00 0.00 31.71 3.51
8767 9626 2.031944 GGAGTTGAGGTTTCACGCTTTC 60.032 50.000 0.00 0.00 31.71 2.62
8768 9627 1.597663 AGTTGAGGTTTCACGCTTTCG 59.402 47.619 0.00 0.00 42.43 3.46
9108 9967 6.690530 AGCATGCTTTGTTTTAATTAGCTCA 58.309 32.000 16.30 0.00 33.15 4.26
9109 9968 6.587608 AGCATGCTTTGTTTTAATTAGCTCAC 59.412 34.615 16.30 0.00 33.15 3.51
9110 9969 6.452872 GCATGCTTTGTTTTAATTAGCTCACG 60.453 38.462 11.37 0.00 33.15 4.35
9111 9970 6.307031 TGCTTTGTTTTAATTAGCTCACGA 57.693 33.333 0.00 0.00 33.15 4.35
9112 9971 6.730175 TGCTTTGTTTTAATTAGCTCACGAA 58.270 32.000 0.00 0.00 33.15 3.85
9113 9972 6.855914 TGCTTTGTTTTAATTAGCTCACGAAG 59.144 34.615 0.00 9.19 33.15 3.79
9114 9973 7.075741 GCTTTGTTTTAATTAGCTCACGAAGA 58.924 34.615 14.04 0.00 30.19 2.87
9123 9982 3.914984 CTCACGAAGAGCAAGGGAA 57.085 52.632 0.00 0.00 37.59 3.97
9124 9983 1.719600 CTCACGAAGAGCAAGGGAAG 58.280 55.000 0.00 0.00 37.59 3.46
9125 9984 1.273606 CTCACGAAGAGCAAGGGAAGA 59.726 52.381 0.00 0.00 37.59 2.87
9126 9985 1.273606 TCACGAAGAGCAAGGGAAGAG 59.726 52.381 0.00 0.00 0.00 2.85
9127 9986 0.036858 ACGAAGAGCAAGGGAAGAGC 60.037 55.000 0.00 0.00 0.00 4.09
9128 9987 0.036952 CGAAGAGCAAGGGAAGAGCA 60.037 55.000 0.00 0.00 0.00 4.26
9129 9988 1.609061 CGAAGAGCAAGGGAAGAGCAA 60.609 52.381 0.00 0.00 0.00 3.91
9130 9989 2.508526 GAAGAGCAAGGGAAGAGCAAA 58.491 47.619 0.00 0.00 0.00 3.68
9131 9990 2.895242 AGAGCAAGGGAAGAGCAAAT 57.105 45.000 0.00 0.00 0.00 2.32
9132 9991 2.444421 AGAGCAAGGGAAGAGCAAATG 58.556 47.619 0.00 0.00 0.00 2.32
9133 9992 2.165998 GAGCAAGGGAAGAGCAAATGT 58.834 47.619 0.00 0.00 0.00 2.71
9134 9993 1.891150 AGCAAGGGAAGAGCAAATGTG 59.109 47.619 0.00 0.00 0.00 3.21
9135 9994 1.615392 GCAAGGGAAGAGCAAATGTGT 59.385 47.619 0.00 0.00 0.00 3.72
9136 9995 2.036346 GCAAGGGAAGAGCAAATGTGTT 59.964 45.455 0.00 0.00 0.00 3.32
9137 9996 3.255642 GCAAGGGAAGAGCAAATGTGTTA 59.744 43.478 0.00 0.00 0.00 2.41
9138 9997 4.616835 GCAAGGGAAGAGCAAATGTGTTAG 60.617 45.833 0.00 0.00 0.00 2.34
9139 9998 4.640771 AGGGAAGAGCAAATGTGTTAGA 57.359 40.909 0.00 0.00 0.00 2.10
9140 9999 4.985538 AGGGAAGAGCAAATGTGTTAGAA 58.014 39.130 0.00 0.00 0.00 2.10
9141 10000 5.006386 AGGGAAGAGCAAATGTGTTAGAAG 58.994 41.667 0.00 0.00 0.00 2.85
9142 10001 4.762251 GGGAAGAGCAAATGTGTTAGAAGT 59.238 41.667 0.00 0.00 0.00 3.01
9143 10002 5.106515 GGGAAGAGCAAATGTGTTAGAAGTC 60.107 44.000 0.00 0.00 0.00 3.01
9144 10003 5.470098 GGAAGAGCAAATGTGTTAGAAGTCA 59.530 40.000 0.00 0.00 0.00 3.41
9145 10004 6.017109 GGAAGAGCAAATGTGTTAGAAGTCAA 60.017 38.462 0.00 0.00 0.00 3.18
9146 10005 6.942532 AGAGCAAATGTGTTAGAAGTCAAA 57.057 33.333 0.00 0.00 0.00 2.69
9147 10006 7.333528 AGAGCAAATGTGTTAGAAGTCAAAA 57.666 32.000 0.00 0.00 0.00 2.44
9148 10007 7.196331 AGAGCAAATGTGTTAGAAGTCAAAAC 58.804 34.615 0.00 0.00 0.00 2.43
9149 10008 5.971202 AGCAAATGTGTTAGAAGTCAAAACG 59.029 36.000 0.00 0.00 0.00 3.60
9150 10009 5.968848 GCAAATGTGTTAGAAGTCAAAACGA 59.031 36.000 0.00 0.00 0.00 3.85
9151 10010 6.636850 GCAAATGTGTTAGAAGTCAAAACGAT 59.363 34.615 0.00 0.00 0.00 3.73
9152 10011 7.149128 GCAAATGTGTTAGAAGTCAAAACGATC 60.149 37.037 0.00 0.00 0.00 3.69
9153 10012 7.730364 AATGTGTTAGAAGTCAAAACGATCT 57.270 32.000 0.00 0.00 33.09 2.75
9154 10013 6.525121 TGTGTTAGAAGTCAAAACGATCTG 57.475 37.500 0.00 0.00 31.57 2.90
9155 10014 6.277605 TGTGTTAGAAGTCAAAACGATCTGA 58.722 36.000 0.00 0.00 31.57 3.27
9156 10015 6.759356 TGTGTTAGAAGTCAAAACGATCTGAA 59.241 34.615 0.00 0.00 31.57 3.02
9157 10016 7.064064 GTGTTAGAAGTCAAAACGATCTGAAC 58.936 38.462 0.00 0.00 31.57 3.18
9158 10017 6.759356 TGTTAGAAGTCAAAACGATCTGAACA 59.241 34.615 0.00 0.00 31.57 3.18
9159 10018 5.659048 AGAAGTCAAAACGATCTGAACAC 57.341 39.130 0.00 0.00 0.00 3.32
9160 10019 4.511826 AGAAGTCAAAACGATCTGAACACC 59.488 41.667 0.00 0.00 0.00 4.16
9161 10020 4.073293 AGTCAAAACGATCTGAACACCT 57.927 40.909 0.00 0.00 0.00 4.00
9162 10021 4.451900 AGTCAAAACGATCTGAACACCTT 58.548 39.130 0.00 0.00 0.00 3.50
9163 10022 5.607477 AGTCAAAACGATCTGAACACCTTA 58.393 37.500 0.00 0.00 0.00 2.69
9164 10023 6.231211 AGTCAAAACGATCTGAACACCTTAT 58.769 36.000 0.00 0.00 0.00 1.73
9165 10024 7.383687 AGTCAAAACGATCTGAACACCTTATA 58.616 34.615 0.00 0.00 0.00 0.98
9166 10025 7.545965 AGTCAAAACGATCTGAACACCTTATAG 59.454 37.037 0.00 0.00 0.00 1.31
9167 10026 7.544566 GTCAAAACGATCTGAACACCTTATAGA 59.455 37.037 0.00 0.00 0.00 1.98
9168 10027 8.258007 TCAAAACGATCTGAACACCTTATAGAT 58.742 33.333 0.00 0.00 0.00 1.98
9169 10028 8.543774 CAAAACGATCTGAACACCTTATAGATC 58.456 37.037 0.00 0.00 40.03 2.75
9170 10029 7.589958 AACGATCTGAACACCTTATAGATCT 57.410 36.000 0.00 0.00 40.82 2.75
9171 10030 7.209471 ACGATCTGAACACCTTATAGATCTC 57.791 40.000 0.00 0.00 40.82 2.75
9172 10031 6.207810 ACGATCTGAACACCTTATAGATCTCC 59.792 42.308 0.00 0.00 40.82 3.71
9173 10032 6.207614 CGATCTGAACACCTTATAGATCTCCA 59.792 42.308 0.00 0.00 40.82 3.86
9174 10033 6.968263 TCTGAACACCTTATAGATCTCCAG 57.032 41.667 0.00 0.00 0.00 3.86
9175 10034 5.303078 TCTGAACACCTTATAGATCTCCAGC 59.697 44.000 0.00 0.00 0.00 4.85
9176 10035 4.962362 TGAACACCTTATAGATCTCCAGCA 59.038 41.667 0.00 0.00 0.00 4.41
9177 10036 5.069648 TGAACACCTTATAGATCTCCAGCAG 59.930 44.000 0.00 0.00 0.00 4.24
9178 10037 4.809193 ACACCTTATAGATCTCCAGCAGA 58.191 43.478 0.00 0.00 34.78 4.26
9179 10038 5.211973 ACACCTTATAGATCTCCAGCAGAA 58.788 41.667 0.00 0.00 33.62 3.02
9180 10039 5.069781 ACACCTTATAGATCTCCAGCAGAAC 59.930 44.000 0.00 0.00 33.62 3.01
9181 10040 5.069648 CACCTTATAGATCTCCAGCAGAACA 59.930 44.000 0.00 0.00 33.62 3.18
9182 10041 5.663106 ACCTTATAGATCTCCAGCAGAACAA 59.337 40.000 0.00 0.00 33.62 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.267551 AGGGGGCGACTAAAGGAAAAATA 59.732 43.478 0.00 0.00 0.00 1.40
22 23 5.538433 CAGGAACTCAGAAAATTGGGGTTAA 59.462 40.000 0.00 0.00 34.60 2.01
24 25 3.897505 CAGGAACTCAGAAAATTGGGGTT 59.102 43.478 0.00 0.00 34.60 4.11
25 26 3.500343 CAGGAACTCAGAAAATTGGGGT 58.500 45.455 0.00 0.00 34.60 4.95
26 27 2.232208 GCAGGAACTCAGAAAATTGGGG 59.768 50.000 0.00 0.00 34.60 4.96
27 28 2.232208 GGCAGGAACTCAGAAAATTGGG 59.768 50.000 0.00 0.00 34.60 4.12
30 31 4.077822 CAGAGGCAGGAACTCAGAAAATT 58.922 43.478 0.00 0.00 34.60 1.82
31 32 3.073650 ACAGAGGCAGGAACTCAGAAAAT 59.926 43.478 0.00 0.00 34.60 1.82
37 41 0.681733 GTGACAGAGGCAGGAACTCA 59.318 55.000 0.00 0.00 34.60 3.41
38 42 0.972883 AGTGACAGAGGCAGGAACTC 59.027 55.000 0.00 0.00 34.60 3.01
51 55 5.178623 CGTAAAATAACAGGAAGCAGTGACA 59.821 40.000 0.00 0.00 0.00 3.58
57 61 5.278071 CCAACACGTAAAATAACAGGAAGCA 60.278 40.000 0.00 0.00 0.00 3.91
62 66 8.907685 CAATTAACCAACACGTAAAATAACAGG 58.092 33.333 0.00 0.00 0.00 4.00
64 68 9.798994 AACAATTAACCAACACGTAAAATAACA 57.201 25.926 0.00 0.00 0.00 2.41
69 73 8.928270 ATGAAACAATTAACCAACACGTAAAA 57.072 26.923 0.00 0.00 0.00 1.52
75 79 7.704472 TGAGTGAATGAAACAATTAACCAACAC 59.296 33.333 0.00 0.00 0.00 3.32
89 93 7.766283 TGTACAACAACATTGAGTGAATGAAA 58.234 30.769 9.45 0.00 43.87 2.69
110 114 7.572759 ACGTATGCATGCTATACAATTTGTAC 58.427 34.615 25.93 0.68 35.42 2.90
113 117 6.912051 ACAACGTATGCATGCTATACAATTTG 59.088 34.615 25.93 24.53 31.94 2.32
114 118 7.026631 ACAACGTATGCATGCTATACAATTT 57.973 32.000 25.93 17.80 31.94 1.82
115 119 6.293407 GGACAACGTATGCATGCTATACAATT 60.293 38.462 25.93 19.99 31.94 2.32
132 136 2.221169 TGTACTACGTCAGGACAACGT 58.779 47.619 6.54 6.54 45.62 3.99
133 137 2.975410 TGTACTACGTCAGGACAACG 57.025 50.000 7.39 0.00 45.62 4.10
140 144 3.002451 CCCTCGATCTTGTACTACGTCAG 59.998 52.174 0.00 0.00 0.00 3.51
141 145 2.941064 CCCTCGATCTTGTACTACGTCA 59.059 50.000 0.00 0.00 0.00 4.35
142 146 2.286891 GCCCTCGATCTTGTACTACGTC 60.287 54.545 0.00 0.00 0.00 4.34
156 160 3.008517 TGAATGGCCTGCCCTCGA 61.009 61.111 3.32 0.00 34.56 4.04
157 161 2.825836 GTGAATGGCCTGCCCTCG 60.826 66.667 3.32 0.00 34.56 4.63
175 179 5.509498 AGCTTCACCCAACAATATATGTGT 58.491 37.500 0.00 0.00 42.99 3.72
198 202 1.588674 CCACACAAACTACGCCTTGA 58.411 50.000 0.00 0.00 0.00 3.02
222 227 0.250234 TAGTCAGACCTGGCACATGC 59.750 55.000 4.34 0.00 38.20 4.06
238 243 9.179909 CCCGTTCTAGATCAATGATACTATAGT 57.820 37.037 10.87 10.87 0.00 2.12
240 245 8.957466 CACCCGTTCTAGATCAATGATACTATA 58.043 37.037 0.00 0.00 0.00 1.31
241 246 7.670140 TCACCCGTTCTAGATCAATGATACTAT 59.330 37.037 0.00 0.00 0.00 2.12
255 260 6.735130 AGTTTTTCAAAATCACCCGTTCTAG 58.265 36.000 0.00 0.00 0.00 2.43
257 262 5.592104 AGTTTTTCAAAATCACCCGTTCT 57.408 34.783 0.00 0.00 0.00 3.01
261 266 5.578727 TCAACAAGTTTTTCAAAATCACCCG 59.421 36.000 0.00 0.00 0.00 5.28
313 319 4.920640 AACATCTCTGGTACACCGATAG 57.079 45.455 0.00 0.00 39.43 2.08
332 338 5.979517 ACTCATCTGTAAAAAGCTTGCAAAC 59.020 36.000 0.00 0.00 0.00 2.93
355 361 8.837059 CGCAAACACTCAAAGTAATTATACAAC 58.163 33.333 0.00 0.00 34.29 3.32
358 374 6.964934 CCCGCAAACACTCAAAGTAATTATAC 59.035 38.462 0.00 0.00 0.00 1.47
363 379 2.030274 GCCCGCAAACACTCAAAGTAAT 60.030 45.455 0.00 0.00 0.00 1.89
371 387 1.734388 AACCAAGCCCGCAAACACTC 61.734 55.000 0.00 0.00 0.00 3.51
375 391 2.448926 AATAAACCAAGCCCGCAAAC 57.551 45.000 0.00 0.00 0.00 2.93
376 392 2.608261 CGAAATAAACCAAGCCCGCAAA 60.608 45.455 0.00 0.00 0.00 3.68
377 393 1.068194 CGAAATAAACCAAGCCCGCAA 60.068 47.619 0.00 0.00 0.00 4.85
384 400 6.604930 ACATAAACGGACGAAATAAACCAAG 58.395 36.000 0.00 0.00 0.00 3.61
388 404 6.406042 CGCTTACATAAACGGACGAAATAAAC 59.594 38.462 0.00 0.00 0.00 2.01
391 407 5.624715 CGCTTACATAAACGGACGAAATA 57.375 39.130 0.00 0.00 0.00 1.40
399 415 1.912001 TCGTCCGCTTACATAAACGG 58.088 50.000 7.07 7.07 46.97 4.44
400 416 3.976468 TTTCGTCCGCTTACATAAACG 57.024 42.857 0.00 0.00 0.00 3.60
401 417 6.286941 CGATATTTCGTCCGCTTACATAAAC 58.713 40.000 0.00 0.00 40.53 2.01
402 418 6.442487 CGATATTTCGTCCGCTTACATAAA 57.558 37.500 0.00 0.00 40.53 1.40
416 432 7.228840 TTTTACAGAAAACGGACGATATTTCG 58.771 34.615 3.88 3.88 39.18 3.46
444 460 4.342378 TGGAGTTCAGCAGAGTATGGATAC 59.658 45.833 0.00 0.00 0.00 2.24
450 466 3.110705 ACCATGGAGTTCAGCAGAGTAT 58.889 45.455 21.47 0.00 0.00 2.12
458 474 4.523943 TCCATCAAAAACCATGGAGTTCAG 59.476 41.667 21.47 8.23 43.11 3.02
480 496 3.848272 TGACAAAAAGCGGATGGATTC 57.152 42.857 0.00 0.00 0.00 2.52
482 498 4.599047 TTTTGACAAAAAGCGGATGGAT 57.401 36.364 10.92 0.00 31.61 3.41
483 499 4.280677 AGATTTTGACAAAAAGCGGATGGA 59.719 37.500 16.85 0.00 44.51 3.41
484 500 4.559153 AGATTTTGACAAAAAGCGGATGG 58.441 39.130 16.85 0.00 44.51 3.51
485 501 6.611381 TCTAGATTTTGACAAAAAGCGGATG 58.389 36.000 16.85 5.14 44.51 3.51
488 504 5.734498 CGATCTAGATTTTGACAAAAAGCGG 59.266 40.000 16.85 8.55 44.51 5.52
500 518 6.929049 TCCGCATGTATTTCGATCTAGATTTT 59.071 34.615 6.70 0.00 0.00 1.82
507 525 3.452755 TGTCCGCATGTATTTCGATCT 57.547 42.857 0.00 0.00 0.00 2.75
525 543 1.332144 GGCCATCCAACCATGCATGT 61.332 55.000 24.58 10.59 0.00 3.21
526 544 1.444250 GGCCATCCAACCATGCATG 59.556 57.895 20.19 20.19 0.00 4.06
527 545 2.129146 CGGCCATCCAACCATGCAT 61.129 57.895 2.24 0.00 0.00 3.96
528 546 2.755064 CGGCCATCCAACCATGCA 60.755 61.111 2.24 0.00 0.00 3.96
570 610 3.090219 AACGCTGGCCCTCGTATCC 62.090 63.158 17.89 0.00 38.03 2.59
587 627 0.462581 GATGGTCAGCGCATCTCCAA 60.463 55.000 11.47 0.00 0.00 3.53
588 628 1.144716 GATGGTCAGCGCATCTCCA 59.855 57.895 11.47 13.04 0.00 3.86
597 637 2.290093 GCAGAATTGCTAGATGGTCAGC 59.710 50.000 0.00 0.00 46.95 4.26
611 651 3.675348 TTCATCTCCCATGGCAGAATT 57.325 42.857 10.09 0.00 0.00 2.17
612 652 3.675348 TTTCATCTCCCATGGCAGAAT 57.325 42.857 10.09 0.00 0.00 2.40
613 653 3.293337 CATTTCATCTCCCATGGCAGAA 58.707 45.455 10.09 4.12 0.00 3.02
614 654 2.940158 CATTTCATCTCCCATGGCAGA 58.060 47.619 8.12 8.12 0.00 4.26
615 655 1.340248 GCATTTCATCTCCCATGGCAG 59.660 52.381 6.09 0.00 0.00 4.85
616 656 1.342175 TGCATTTCATCTCCCATGGCA 60.342 47.619 6.09 0.00 0.00 4.92
617 657 1.405872 TGCATTTCATCTCCCATGGC 58.594 50.000 6.09 0.00 0.00 4.40
632 672 7.550196 GTGGTATCAATGGAAAAGAAAATGCAT 59.450 33.333 0.00 0.00 0.00 3.96
650 690 5.867174 CACGACAACATTCTAAGTGGTATCA 59.133 40.000 0.00 0.00 0.00 2.15
651 691 5.867716 ACACGACAACATTCTAAGTGGTATC 59.132 40.000 0.00 0.00 32.98 2.24
661 701 3.021269 TCGCTTACACGACAACATTCT 57.979 42.857 0.00 0.00 37.09 2.40
671 711 2.964123 CACACAACAATTCGCTTACACG 59.036 45.455 0.00 0.00 0.00 4.49
674 714 3.619233 ACCACACAACAATTCGCTTAC 57.381 42.857 0.00 0.00 0.00 2.34
685 725 3.609175 CGTGATCATCCAAACCACACAAC 60.609 47.826 0.00 0.00 0.00 3.32
686 726 2.551887 CGTGATCATCCAAACCACACAA 59.448 45.455 0.00 0.00 0.00 3.33
687 727 2.150390 CGTGATCATCCAAACCACACA 58.850 47.619 0.00 0.00 0.00 3.72
688 728 2.416547 CTCGTGATCATCCAAACCACAC 59.583 50.000 0.00 0.00 0.00 3.82
694 734 0.911769 AGGCCTCGTGATCATCCAAA 59.088 50.000 0.00 0.00 0.00 3.28
696 736 0.397675 AGAGGCCTCGTGATCATCCA 60.398 55.000 26.95 0.00 34.09 3.41
698 738 1.543802 CCTAGAGGCCTCGTGATCATC 59.456 57.143 26.95 0.31 34.09 2.92
699 739 1.145945 TCCTAGAGGCCTCGTGATCAT 59.854 52.381 26.95 10.38 34.44 2.45
700 740 0.551396 TCCTAGAGGCCTCGTGATCA 59.449 55.000 26.95 7.55 34.44 2.92
701 741 1.917872 ATCCTAGAGGCCTCGTGATC 58.082 55.000 26.95 2.81 34.44 2.92
702 742 1.967066 CAATCCTAGAGGCCTCGTGAT 59.033 52.381 26.95 23.87 34.44 3.06
703 743 1.063942 TCAATCCTAGAGGCCTCGTGA 60.064 52.381 26.95 22.79 34.44 4.35
722 762 6.256757 CGGACTGAAGGATTTAGACTTGATTC 59.743 42.308 0.00 0.00 34.95 2.52
743 783 9.274065 CTTTTATTAATAAAGTGTTGAGCGGAC 57.726 33.333 17.71 0.00 34.13 4.79
744 784 9.005777 ACTTTTATTAATAAAGTGTTGAGCGGA 57.994 29.630 17.71 1.87 42.54 5.54
766 806 7.037586 TGGACTTAATTGGGAGATAGACACTTT 60.038 37.037 0.00 0.00 0.00 2.66
767 807 6.443849 TGGACTTAATTGGGAGATAGACACTT 59.556 38.462 0.00 0.00 0.00 3.16
963 1034 3.195698 GTGCGATTCACCGGGAGC 61.196 66.667 6.32 2.05 39.79 4.70
1030 1121 1.446791 GATCTGAGGAGCAGCAGGG 59.553 63.158 0.00 0.00 44.52 4.45
1034 1125 1.747774 GAGGGATCTGAGGAGCAGC 59.252 63.158 0.00 0.00 44.52 5.25
1344 1484 2.877168 CGAGTAACTATACAGGCCTCGT 59.123 50.000 0.00 7.77 34.95 4.18
1379 1519 0.737367 TCTCAAATCTCCGTGCAGCG 60.737 55.000 0.00 0.00 40.95 5.18
1382 1522 2.632377 GGAATCTCAAATCTCCGTGCA 58.368 47.619 0.00 0.00 0.00 4.57
1413 1553 1.012486 AGATCGACGCGAAACCAACC 61.012 55.000 15.93 0.00 39.99 3.77
1464 1617 5.010282 CACAGGCCTAACAACTAATCCTTT 58.990 41.667 3.98 0.00 0.00 3.11
1516 1704 1.817099 CGAATCTGCTGACCTGGCC 60.817 63.158 0.00 0.00 0.00 5.36
1578 1766 0.384974 GGAGAGAATCGCGCTACTCG 60.385 60.000 5.56 0.00 42.67 4.18
1653 1868 0.540597 AAGGAAAAGGGCAGAGCACC 60.541 55.000 0.00 0.00 28.43 5.01
1657 1875 0.251519 AGGCAAGGAAAAGGGCAGAG 60.252 55.000 0.00 0.00 0.00 3.35
1740 1961 3.746492 GGCGGATAACCAATAGTTAGCAG 59.254 47.826 3.59 0.77 46.92 4.24
1759 1985 1.213537 CCAGAGCAAAATGGTGGCG 59.786 57.895 0.00 0.00 0.00 5.69
1847 2074 3.545703 CCACCACTGAGTCACTTTTTCT 58.454 45.455 0.00 0.00 0.00 2.52
1849 2076 2.654863 CCCACCACTGAGTCACTTTTT 58.345 47.619 0.00 0.00 0.00 1.94
1855 2082 0.904649 CATAGCCCACCACTGAGTCA 59.095 55.000 0.00 0.00 0.00 3.41
1885 2129 1.350193 CAACATTCTCCACGAGTCCG 58.650 55.000 0.00 0.00 42.50 4.79
1891 2135 0.036164 TCCACCCAACATTCTCCACG 59.964 55.000 0.00 0.00 0.00 4.94
1912 2156 1.758440 TTCTTCTGCTCCGTGCCTGT 61.758 55.000 0.00 0.00 42.00 4.00
1916 2160 1.633852 CTGCTTCTTCTGCTCCGTGC 61.634 60.000 0.00 0.00 43.25 5.34
1924 2168 6.571605 TCACTATCTGAATCTGCTTCTTCTG 58.428 40.000 0.00 0.00 34.75 3.02
2311 2555 6.511416 AGTGTAATGCATTAACAAAACAGCA 58.489 32.000 20.46 8.39 36.34 4.41
2312 2556 7.406799 AAGTGTAATGCATTAACAAAACAGC 57.593 32.000 20.46 10.30 0.00 4.40
2313 2557 7.378461 ACGAAGTGTAATGCATTAACAAAACAG 59.622 33.333 20.46 10.55 42.51 3.16
2338 2953 7.905493 GCAACAAGATGAGTACTTAGCATAAAC 59.095 37.037 5.65 0.00 0.00 2.01
2375 2993 0.465097 GGCATGCTCAGTACCTGCAT 60.465 55.000 18.92 10.72 46.74 3.96
2399 3017 3.011708 AGGGAGGCTGGTCAAAATATTGT 59.988 43.478 0.00 0.00 37.79 2.71
2427 3045 0.252330 TCCCGTATTCACCACCCTCA 60.252 55.000 0.00 0.00 0.00 3.86
2451 3069 3.780804 TTTAGTGCAGGAAGGCTGTAA 57.219 42.857 0.00 0.00 34.04 2.41
2484 3102 4.935352 AAAGCAAGCAGAACAATTACCA 57.065 36.364 0.00 0.00 0.00 3.25
2539 3157 6.924111 AGCAACCCAAATAAGAGTGTAAATG 58.076 36.000 0.00 0.00 0.00 2.32
2618 3241 0.870393 ATGCAGAGTTGACTTGCACG 59.130 50.000 17.10 0.00 38.37 5.34
2889 3520 6.409704 GCAGCTTATCTGATATACAATGGGA 58.590 40.000 0.00 0.00 45.72 4.37
2891 3522 5.587844 GGGCAGCTTATCTGATATACAATGG 59.412 44.000 0.00 0.00 45.72 3.16
2892 3523 6.413052 AGGGCAGCTTATCTGATATACAATG 58.587 40.000 0.00 0.00 45.72 2.82
2893 3524 6.633325 AGGGCAGCTTATCTGATATACAAT 57.367 37.500 0.00 0.00 45.72 2.71
2963 3594 6.072728 CGACATCATTCTTGGTAACTTGGAAA 60.073 38.462 0.00 0.00 37.61 3.13
3020 3651 3.009473 TGAAAGGTATCTCAGCCAGCTTT 59.991 43.478 3.07 3.07 41.33 3.51
3094 3725 0.887933 GGGCACATTGAAACCGTGAT 59.112 50.000 0.00 0.00 32.23 3.06
3374 4006 1.135024 CCGGAACCTGCAATCCAAATG 60.135 52.381 0.00 0.00 35.34 2.32
3375 4007 1.185315 CCGGAACCTGCAATCCAAAT 58.815 50.000 0.00 0.00 35.34 2.32
3376 4008 0.178975 ACCGGAACCTGCAATCCAAA 60.179 50.000 9.46 0.00 35.34 3.28
3377 4009 0.893270 CACCGGAACCTGCAATCCAA 60.893 55.000 9.46 0.00 35.34 3.53
3378 4010 1.303236 CACCGGAACCTGCAATCCA 60.303 57.895 9.46 0.00 35.34 3.41
3379 4011 2.046285 CCACCGGAACCTGCAATCC 61.046 63.158 9.46 3.34 0.00 3.01
3380 4012 0.394352 ATCCACCGGAACCTGCAATC 60.394 55.000 9.46 0.00 34.34 2.67
3408 4040 1.807165 CACCTGCACCGAGTGATCG 60.807 63.158 8.04 0.00 35.23 3.69
3411 4043 1.913262 ATCCACCTGCACCGAGTGA 60.913 57.895 8.04 0.00 35.23 3.41
3531 4163 0.831711 GGGGGACAACCAGCATGTTT 60.832 55.000 0.00 0.00 42.91 2.83
3605 4237 1.477700 CAGGTACATGTTGGCAATGGG 59.522 52.381 2.30 0.00 0.00 4.00
3886 4526 2.749076 TGCATTTTTCCCTCTCATCACG 59.251 45.455 0.00 0.00 0.00 4.35
3916 4556 6.294176 GGACATAGTTGTGTTGCAAAGAGATT 60.294 38.462 0.00 0.00 39.03 2.40
4128 4769 4.526650 ACCAACCCAGTTCATTCCATAAAC 59.473 41.667 0.00 0.00 0.00 2.01
4152 4793 0.249155 GGTCGTGACGAACCAAGTCA 60.249 55.000 12.78 0.00 45.23 3.41
4153 4794 0.031721 AGGTCGTGACGAACCAAGTC 59.968 55.000 20.52 0.00 45.54 3.01
4436 5094 3.330701 ACACCATTCCTTAGCTTTCCAGA 59.669 43.478 0.00 0.00 0.00 3.86
4556 5217 5.485620 TCAAGACATCATGCATCCTATAGC 58.514 41.667 0.00 0.00 0.00 2.97
4969 5640 2.453983 AAACATCAACGCCCCATTTG 57.546 45.000 0.00 0.00 0.00 2.32
5048 5741 8.770438 AGCTAAAGTTTCATGTTCAAACAAAA 57.230 26.923 10.18 0.00 43.03 2.44
5253 5947 3.141398 CAGAAACTTGGAAGCTACTGCA 58.859 45.455 0.00 0.00 42.74 4.41
5320 6014 3.010624 TCACAAACAACGGCAATGATG 57.989 42.857 0.00 0.00 0.00 3.07
5345 6039 8.562892 CATTAGATTATGTCATCCAGTTCAACC 58.437 37.037 0.00 0.00 0.00 3.77
5526 6271 7.576861 TGTCATCATGAATGCAAATGTCTAT 57.423 32.000 0.00 0.00 35.17 1.98
5527 6272 6.459161 GCTGTCATCATGAATGCAAATGTCTA 60.459 38.462 0.00 0.00 35.17 2.59
5528 6273 5.678871 GCTGTCATCATGAATGCAAATGTCT 60.679 40.000 0.00 0.00 35.17 3.41
5529 6274 4.503007 GCTGTCATCATGAATGCAAATGTC 59.497 41.667 0.00 0.00 35.17 3.06
5530 6275 4.430007 GCTGTCATCATGAATGCAAATGT 58.570 39.130 0.00 0.00 35.17 2.71
5531 6276 3.802139 GGCTGTCATCATGAATGCAAATG 59.198 43.478 13.21 0.00 35.17 2.32
5813 6565 8.220755 TCCAATGCAAAAGGTATAAGATACAC 57.779 34.615 0.00 0.00 0.00 2.90
6407 7159 3.169355 CCATTTTCTGTAATGGCAGCC 57.831 47.619 3.66 3.66 45.75 4.85
6511 7263 2.082231 AGCAGCAGCAACAACATCTAG 58.918 47.619 3.17 0.00 45.49 2.43
6787 7539 7.001073 GCCATATATCCCTGAAGAAAACTTCT 58.999 38.462 10.54 0.00 43.15 2.85
6884 7636 1.879380 GCAGCATGACAACAACAGGTA 59.121 47.619 0.00 0.00 39.69 3.08
6909 7661 0.248498 ACGACATCCGATGTAGTGCG 60.248 55.000 22.06 18.44 45.37 5.34
7111 7863 0.252197 GGGGCTCGTGGATGTAAGTT 59.748 55.000 0.00 0.00 0.00 2.66
7129 7881 2.092914 GGTCATGTCCTTGAAGTAGGGG 60.093 54.545 1.28 0.00 35.90 4.79
7195 7947 1.597742 TGCTGTCTCCAAAGTTGAGC 58.402 50.000 0.00 0.00 0.00 4.26
7306 8058 3.199677 CCGGCTACCATACGAATTGAAA 58.800 45.455 0.00 0.00 0.00 2.69
7312 8064 2.414179 CGCCGGCTACCATACGAA 59.586 61.111 26.68 0.00 0.00 3.85
7339 8091 0.250234 TTCCTCTTGCCATCACCTCG 59.750 55.000 0.00 0.00 0.00 4.63
7469 8221 4.001618 TCACATACAACTAGCAGCAACA 57.998 40.909 0.00 0.00 0.00 3.33
7691 8443 8.349245 CGATGCTGTTATTTCCCAAATATGTAA 58.651 33.333 0.00 0.00 33.64 2.41
7707 8461 5.294356 ACACACTTACTTTCGATGCTGTTA 58.706 37.500 0.00 0.00 0.00 2.41
7841 8596 1.439644 GAGTGAGTCGGCATCCTCC 59.560 63.158 0.00 0.00 0.00 4.30
7919 8674 3.350031 GGTCACATCCTGGCCAGGG 62.350 68.421 44.36 33.30 45.18 4.45
8020 8867 7.265673 TCATACAAAACTGTAGGACTGATAGC 58.734 38.462 0.00 0.00 31.30 2.97
8063 8910 1.338769 CCCAAGTACCCAACGGAGAAG 60.339 57.143 0.00 0.00 0.00 2.85
8069 8916 1.232119 GTCAACCCAAGTACCCAACG 58.768 55.000 0.00 0.00 0.00 4.10
8077 8924 4.023291 ACAAAGAATGTGTCAACCCAAGT 58.977 39.130 0.00 0.00 41.93 3.16
8078 8925 4.654091 ACAAAGAATGTGTCAACCCAAG 57.346 40.909 0.00 0.00 41.93 3.61
8103 8950 1.845664 TAGGCCAACTCCACCTGCA 60.846 57.895 5.01 0.00 34.92 4.41
8191 9038 3.670377 GGCGGAAAGGGTGTGTGC 61.670 66.667 0.00 0.00 0.00 4.57
8227 9079 3.719268 TGATGGTGGCACTAACAAGAT 57.281 42.857 18.45 0.00 0.00 2.40
8294 9146 4.202212 GGTATGGAAATGCCGGCTTTATTT 60.202 41.667 29.70 24.05 40.66 1.40
8300 9152 0.466189 CAGGTATGGAAATGCCGGCT 60.466 55.000 29.70 7.33 40.66 5.52
8331 9184 3.103742 ACCAAACACCCACAAATCAACT 58.896 40.909 0.00 0.00 0.00 3.16
8334 9187 2.834549 ACAACCAAACACCCACAAATCA 59.165 40.909 0.00 0.00 0.00 2.57
8340 9193 0.899019 AACCACAACCAAACACCCAC 59.101 50.000 0.00 0.00 0.00 4.61
8342 9195 2.959707 TCATAACCACAACCAAACACCC 59.040 45.455 0.00 0.00 0.00 4.61
8391 9245 6.207691 ACGATTTTAATCCTCCACAATTGG 57.792 37.500 10.83 0.00 36.83 3.16
8407 9261 5.717078 TGTACACCAGACTCTACGATTTT 57.283 39.130 0.00 0.00 0.00 1.82
8419 9273 2.293122 GCACAAAGCAATGTACACCAGA 59.707 45.455 0.00 0.00 44.79 3.86
8420 9274 2.664916 GCACAAAGCAATGTACACCAG 58.335 47.619 0.00 0.00 44.79 4.00
8421 9275 2.791383 GCACAAAGCAATGTACACCA 57.209 45.000 0.00 0.00 44.79 4.17
8481 9335 7.391620 CAGTAGATTGGTGAGGTAAAGGTTAA 58.608 38.462 0.00 0.00 0.00 2.01
8502 9357 3.112263 AGGTATGTAAAGGCAGGCAGTA 58.888 45.455 0.00 0.00 0.00 2.74
8511 9366 5.934402 AGGTCACTACAGGTATGTAAAGG 57.066 43.478 0.00 0.00 41.33 3.11
8580 9437 5.592688 ACAGAATGAAGAAAAGAAACCGGAA 59.407 36.000 9.46 0.00 39.69 4.30
8581 9438 5.130350 ACAGAATGAAGAAAAGAAACCGGA 58.870 37.500 9.46 0.00 39.69 5.14
8582 9439 5.438761 ACAGAATGAAGAAAAGAAACCGG 57.561 39.130 0.00 0.00 39.69 5.28
8583 9440 5.452777 GGACAGAATGAAGAAAAGAAACCG 58.547 41.667 0.00 0.00 39.69 4.44
8584 9441 5.536538 AGGGACAGAATGAAGAAAAGAAACC 59.463 40.000 0.00 0.00 39.69 3.27
8585 9442 6.641169 AGGGACAGAATGAAGAAAAGAAAC 57.359 37.500 0.00 0.00 39.69 2.78
8589 9446 4.522022 AGCAAGGGACAGAATGAAGAAAAG 59.478 41.667 0.00 0.00 39.69 2.27
8591 9448 4.104383 AGCAAGGGACAGAATGAAGAAA 57.896 40.909 0.00 0.00 39.69 2.52
8592 9449 3.795688 AGCAAGGGACAGAATGAAGAA 57.204 42.857 0.00 0.00 39.69 2.52
8594 9451 6.521151 AATAAAGCAAGGGACAGAATGAAG 57.479 37.500 0.00 0.00 39.69 3.02
8597 9454 5.801947 CGAAAATAAAGCAAGGGACAGAATG 59.198 40.000 0.00 0.00 46.00 2.67
8601 9458 4.379499 GGACGAAAATAAAGCAAGGGACAG 60.379 45.833 0.00 0.00 0.00 3.51
8688 9547 0.035152 AGATCGCACAATCTGGCCAA 60.035 50.000 7.01 0.00 34.68 4.52
8693 9552 3.557595 GGTAAAGGAGATCGCACAATCTG 59.442 47.826 0.00 0.00 36.13 2.90
8703 9562 7.306866 CGATTCGAAGAAATGGTAAAGGAGATC 60.307 40.741 3.35 0.00 45.90 2.75
8726 9585 5.775701 ACTCCTCAGGCTATATGTTAACGAT 59.224 40.000 0.26 0.00 0.00 3.73
8727 9586 5.138276 ACTCCTCAGGCTATATGTTAACGA 58.862 41.667 0.26 0.00 0.00 3.85
8728 9587 5.455056 ACTCCTCAGGCTATATGTTAACG 57.545 43.478 0.26 0.00 0.00 3.18
8729 9588 6.817184 TCAACTCCTCAGGCTATATGTTAAC 58.183 40.000 0.00 0.00 0.00 2.01
8730 9589 6.042093 CCTCAACTCCTCAGGCTATATGTTAA 59.958 42.308 0.00 0.00 0.00 2.01
8731 9590 5.540337 CCTCAACTCCTCAGGCTATATGTTA 59.460 44.000 0.00 0.00 0.00 2.41
8732 9591 4.346418 CCTCAACTCCTCAGGCTATATGTT 59.654 45.833 0.00 0.00 0.00 2.71
8733 9592 3.900601 CCTCAACTCCTCAGGCTATATGT 59.099 47.826 0.00 0.00 0.00 2.29
8734 9593 3.900601 ACCTCAACTCCTCAGGCTATATG 59.099 47.826 0.00 0.00 0.00 1.78
8735 9594 4.206244 ACCTCAACTCCTCAGGCTATAT 57.794 45.455 0.00 0.00 0.00 0.86
8736 9595 3.689872 ACCTCAACTCCTCAGGCTATA 57.310 47.619 0.00 0.00 0.00 1.31
8737 9596 2.559381 ACCTCAACTCCTCAGGCTAT 57.441 50.000 0.00 0.00 0.00 2.97
8738 9597 2.327325 AACCTCAACTCCTCAGGCTA 57.673 50.000 0.00 0.00 0.00 3.93
8739 9598 1.349357 GAAACCTCAACTCCTCAGGCT 59.651 52.381 0.00 0.00 0.00 4.58
8740 9599 1.072331 TGAAACCTCAACTCCTCAGGC 59.928 52.381 0.00 0.00 0.00 4.85
8741 9600 2.772287 GTGAAACCTCAACTCCTCAGG 58.228 52.381 0.00 0.00 31.88 3.86
8742 9601 2.408050 CGTGAAACCTCAACTCCTCAG 58.592 52.381 0.00 0.00 31.88 3.35
8743 9602 1.540363 GCGTGAAACCTCAACTCCTCA 60.540 52.381 0.00 0.00 31.88 3.86
8744 9603 1.149148 GCGTGAAACCTCAACTCCTC 58.851 55.000 0.00 0.00 31.88 3.71
8745 9604 0.759346 AGCGTGAAACCTCAACTCCT 59.241 50.000 0.00 0.00 31.88 3.69
8746 9605 1.594331 AAGCGTGAAACCTCAACTCC 58.406 50.000 0.00 0.00 31.88 3.85
8747 9606 2.348591 CGAAAGCGTGAAACCTCAACTC 60.349 50.000 0.00 0.00 31.88 3.01
8748 9607 1.597663 CGAAAGCGTGAAACCTCAACT 59.402 47.619 0.00 0.00 31.88 3.16
8749 9608 2.018717 CGAAAGCGTGAAACCTCAAC 57.981 50.000 0.00 0.00 31.88 3.18
9084 9943 6.587608 GTGAGCTAATTAAAACAAAGCATGCT 59.412 34.615 16.30 16.30 35.63 3.79
9085 9944 6.452872 CGTGAGCTAATTAAAACAAAGCATGC 60.453 38.462 10.51 10.51 35.63 4.06
9086 9945 6.801377 TCGTGAGCTAATTAAAACAAAGCATG 59.199 34.615 0.00 0.00 35.63 4.06
9087 9946 6.908825 TCGTGAGCTAATTAAAACAAAGCAT 58.091 32.000 0.00 0.00 35.63 3.79
9088 9947 6.307031 TCGTGAGCTAATTAAAACAAAGCA 57.693 33.333 0.00 0.00 35.63 3.91
9089 9948 7.075741 TCTTCGTGAGCTAATTAAAACAAAGC 58.924 34.615 0.00 0.00 0.00 3.51
9090 9949 8.647035 CTCTTCGTGAGCTAATTAAAACAAAG 57.353 34.615 0.00 0.00 35.84 2.77
9105 9964 1.273606 TCTTCCCTTGCTCTTCGTGAG 59.726 52.381 4.32 4.32 45.33 3.51
9106 9965 1.273606 CTCTTCCCTTGCTCTTCGTGA 59.726 52.381 0.00 0.00 0.00 4.35
9107 9966 1.719600 CTCTTCCCTTGCTCTTCGTG 58.280 55.000 0.00 0.00 0.00 4.35
9108 9967 0.036858 GCTCTTCCCTTGCTCTTCGT 60.037 55.000 0.00 0.00 0.00 3.85
9109 9968 0.036952 TGCTCTTCCCTTGCTCTTCG 60.037 55.000 0.00 0.00 0.00 3.79
9110 9969 2.191128 TTGCTCTTCCCTTGCTCTTC 57.809 50.000 0.00 0.00 0.00 2.87
9111 9970 2.664402 TTTGCTCTTCCCTTGCTCTT 57.336 45.000 0.00 0.00 0.00 2.85
9112 9971 2.224967 ACATTTGCTCTTCCCTTGCTCT 60.225 45.455 0.00 0.00 0.00 4.09
9113 9972 2.094854 CACATTTGCTCTTCCCTTGCTC 60.095 50.000 0.00 0.00 0.00 4.26
9114 9973 1.891150 CACATTTGCTCTTCCCTTGCT 59.109 47.619 0.00 0.00 0.00 3.91
9115 9974 1.615392 ACACATTTGCTCTTCCCTTGC 59.385 47.619 0.00 0.00 0.00 4.01
9116 9975 4.761739 TCTAACACATTTGCTCTTCCCTTG 59.238 41.667 0.00 0.00 0.00 3.61
9117 9976 4.985538 TCTAACACATTTGCTCTTCCCTT 58.014 39.130 0.00 0.00 0.00 3.95
9118 9977 4.640771 TCTAACACATTTGCTCTTCCCT 57.359 40.909 0.00 0.00 0.00 4.20
9119 9978 4.762251 ACTTCTAACACATTTGCTCTTCCC 59.238 41.667 0.00 0.00 0.00 3.97
9120 9979 5.470098 TGACTTCTAACACATTTGCTCTTCC 59.530 40.000 0.00 0.00 0.00 3.46
9121 9980 6.545504 TGACTTCTAACACATTTGCTCTTC 57.454 37.500 0.00 0.00 0.00 2.87
9122 9981 6.942532 TTGACTTCTAACACATTTGCTCTT 57.057 33.333 0.00 0.00 0.00 2.85
9123 9982 6.942532 TTTGACTTCTAACACATTTGCTCT 57.057 33.333 0.00 0.00 0.00 4.09
9124 9983 6.140737 CGTTTTGACTTCTAACACATTTGCTC 59.859 38.462 0.00 0.00 0.00 4.26
9125 9984 5.971202 CGTTTTGACTTCTAACACATTTGCT 59.029 36.000 0.00 0.00 0.00 3.91
9126 9985 5.968848 TCGTTTTGACTTCTAACACATTTGC 59.031 36.000 0.00 0.00 0.00 3.68
9127 9986 8.070171 AGATCGTTTTGACTTCTAACACATTTG 58.930 33.333 0.00 0.00 0.00 2.32
9128 9987 8.070171 CAGATCGTTTTGACTTCTAACACATTT 58.930 33.333 0.00 0.00 0.00 2.32
9129 9988 7.441157 TCAGATCGTTTTGACTTCTAACACATT 59.559 33.333 0.00 0.00 0.00 2.71
9130 9989 6.929049 TCAGATCGTTTTGACTTCTAACACAT 59.071 34.615 0.00 0.00 0.00 3.21
9131 9990 6.277605 TCAGATCGTTTTGACTTCTAACACA 58.722 36.000 0.00 0.00 0.00 3.72
9132 9991 6.764877 TCAGATCGTTTTGACTTCTAACAC 57.235 37.500 0.00 0.00 0.00 3.32
9133 9992 6.759356 TGTTCAGATCGTTTTGACTTCTAACA 59.241 34.615 0.00 0.00 0.00 2.41
9134 9993 7.064064 GTGTTCAGATCGTTTTGACTTCTAAC 58.936 38.462 0.00 0.00 0.00 2.34
9135 9994 6.202188 GGTGTTCAGATCGTTTTGACTTCTAA 59.798 38.462 0.00 0.00 0.00 2.10
9136 9995 5.694910 GGTGTTCAGATCGTTTTGACTTCTA 59.305 40.000 0.00 0.00 0.00 2.10
9137 9996 4.511826 GGTGTTCAGATCGTTTTGACTTCT 59.488 41.667 0.00 0.00 0.00 2.85
9138 9997 4.511826 AGGTGTTCAGATCGTTTTGACTTC 59.488 41.667 0.00 0.00 0.00 3.01
9139 9998 4.451900 AGGTGTTCAGATCGTTTTGACTT 58.548 39.130 0.00 0.00 0.00 3.01
9140 9999 4.073293 AGGTGTTCAGATCGTTTTGACT 57.927 40.909 0.00 0.00 0.00 3.41
9141 10000 4.813296 AAGGTGTTCAGATCGTTTTGAC 57.187 40.909 0.00 0.00 0.00 3.18
9142 10001 7.608153 TCTATAAGGTGTTCAGATCGTTTTGA 58.392 34.615 0.00 0.00 0.00 2.69
9143 10002 7.827819 TCTATAAGGTGTTCAGATCGTTTTG 57.172 36.000 0.00 0.00 0.00 2.44
9144 10003 8.478877 AGATCTATAAGGTGTTCAGATCGTTTT 58.521 33.333 0.00 0.00 44.06 2.43
9145 10004 8.012957 AGATCTATAAGGTGTTCAGATCGTTT 57.987 34.615 0.00 0.00 44.06 3.60
9146 10005 7.255660 GGAGATCTATAAGGTGTTCAGATCGTT 60.256 40.741 0.00 0.00 44.06 3.85
9147 10006 6.207810 GGAGATCTATAAGGTGTTCAGATCGT 59.792 42.308 0.00 0.00 44.06 3.73
9148 10007 6.207614 TGGAGATCTATAAGGTGTTCAGATCG 59.792 42.308 0.00 0.00 44.06 3.69
9149 10008 7.531857 TGGAGATCTATAAGGTGTTCAGATC 57.468 40.000 0.00 0.00 41.17 2.75
9150 10009 6.014669 GCTGGAGATCTATAAGGTGTTCAGAT 60.015 42.308 0.00 0.00 0.00 2.90
9151 10010 5.303078 GCTGGAGATCTATAAGGTGTTCAGA 59.697 44.000 0.00 0.00 0.00 3.27
9152 10011 5.069648 TGCTGGAGATCTATAAGGTGTTCAG 59.930 44.000 0.00 0.00 0.00 3.02
9153 10012 4.962362 TGCTGGAGATCTATAAGGTGTTCA 59.038 41.667 0.00 0.00 0.00 3.18
9154 10013 5.303078 TCTGCTGGAGATCTATAAGGTGTTC 59.697 44.000 0.00 0.00 0.00 3.18
9155 10014 5.211973 TCTGCTGGAGATCTATAAGGTGTT 58.788 41.667 0.00 0.00 0.00 3.32
9156 10015 4.809193 TCTGCTGGAGATCTATAAGGTGT 58.191 43.478 0.00 0.00 0.00 4.16
9157 10016 5.069648 TGTTCTGCTGGAGATCTATAAGGTG 59.930 44.000 0.00 0.00 0.00 4.00
9158 10017 5.211973 TGTTCTGCTGGAGATCTATAAGGT 58.788 41.667 0.00 0.00 0.00 3.50
9159 10018 5.798125 TGTTCTGCTGGAGATCTATAAGG 57.202 43.478 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.