Multiple sequence alignment - TraesCS6A01G399600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G399600 chr6A 100.000 5971 0 0 1 5971 609384659 609378689 0.000000e+00 11027.0
1 TraesCS6A01G399600 chr6D 92.118 3121 163 49 526 3610 462541391 462538318 0.000000e+00 4324.0
2 TraesCS6A01G399600 chr6D 92.754 1946 75 14 3608 5508 462538292 462536368 0.000000e+00 2752.0
3 TraesCS6A01G399600 chr6D 92.732 399 21 5 1 398 462542035 462541644 2.410000e-158 569.0
4 TraesCS6A01G399600 chr6D 96.040 101 3 1 394 494 462541481 462541382 4.790000e-36 163.0
5 TraesCS6A01G399600 chr6D 78.710 155 20 5 5697 5839 462536253 462536100 2.290000e-14 91.6
6 TraesCS6A01G399600 chr6B 90.967 3310 151 60 939 4159 705162944 705159694 0.000000e+00 4320.0
7 TraesCS6A01G399600 chr6B 87.417 1510 118 27 4201 5664 705159698 705158215 0.000000e+00 1670.0
8 TraesCS6A01G399600 chr6B 83.166 398 42 11 1 398 705164497 705164125 2.060000e-89 340.0
9 TraesCS6A01G399600 chr6B 80.969 289 20 13 533 816 705163625 705163367 4.720000e-46 196.0
10 TraesCS6A01G399600 chr7D 96.933 489 10 3 3107 3590 60317390 60317878 0.000000e+00 815.0
11 TraesCS6A01G399600 chr7D 96.728 489 11 3 3107 3590 564007557 564008045 0.000000e+00 809.0
12 TraesCS6A01G399600 chrUn 96.728 489 11 3 3107 3590 96655718 96656206 0.000000e+00 809.0
13 TraesCS6A01G399600 chr2D 96.728 489 11 3 3107 3590 88747598 88747110 0.000000e+00 809.0
14 TraesCS6A01G399600 chr1D 96.728 489 11 3 3107 3590 453842179 453841691 0.000000e+00 809.0
15 TraesCS6A01G399600 chr1D 96.319 489 12 4 3107 3590 484861976 484861489 0.000000e+00 798.0
16 TraesCS6A01G399600 chr4D 96.524 489 12 3 3107 3590 492526690 492526202 0.000000e+00 804.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G399600 chr6A 609378689 609384659 5970 True 11027.00 11027 100.00000 1 5971 1 chr6A.!!$R1 5970
1 TraesCS6A01G399600 chr6D 462536100 462542035 5935 True 1579.92 4324 90.47080 1 5839 5 chr6D.!!$R1 5838
2 TraesCS6A01G399600 chr6B 705158215 705164497 6282 True 1631.50 4320 85.62975 1 5664 4 chr6B.!!$R1 5663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
739 1172 0.247460 GCCAACTCCCAGCCATTTTC 59.753 55.0 0.00 0.00 0.00 2.29 F
1052 1807 0.324275 AGGAGAGGAGAGGAGCACAC 60.324 60.0 0.00 0.00 0.00 3.82 F
2414 3220 0.527817 CGGATAGAGCACCGGTTCAC 60.528 60.0 2.97 0.00 44.59 3.18 F
2478 3284 0.673985 GTTCTCTGTTTTGTGGGCCC 59.326 55.0 17.59 17.59 0.00 5.80 F
3901 4768 0.388520 CTGATTCGTGCGACACTCCA 60.389 55.0 8.07 1.51 31.34 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1911 2715 0.471617 CACCCTTATCCCCTGCAGAG 59.528 60.000 17.39 0.01 0.00 3.35 R
2467 3273 1.045911 GTTGACAGGGGCCCACAAAA 61.046 55.000 27.72 11.09 0.00 2.44 R
3872 4739 1.135859 GCACGAATCAGCAACCAGAAG 60.136 52.381 0.00 0.00 0.00 2.85 R
4081 4951 1.445238 GCAAGTCTCGCTTCGCTCT 60.445 57.895 0.00 0.00 34.69 4.09 R
5298 6212 0.029834 GCAGCGCCACCATTTCATAG 59.970 55.000 2.29 0.00 0.00 2.23 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 116 3.941483 CTGCCTAGTTTCAATAGGTGTGG 59.059 47.826 0.00 0.00 41.68 4.17
172 174 1.522668 TGCCTTGTTTCGACATCCAG 58.477 50.000 0.00 0.00 0.00 3.86
179 181 2.852495 TTTCGACATCCAGCTCGGCC 62.852 60.000 0.00 0.00 33.14 6.13
181 183 2.202987 GACATCCAGCTCGGCCAG 60.203 66.667 2.24 0.00 33.14 4.85
205 207 3.764049 GCTCGTGGTCGCGTTGTC 61.764 66.667 5.77 0.00 36.96 3.18
207 209 4.986587 TCGTGGTCGCGTTGTCCG 62.987 66.667 5.77 3.76 40.40 4.79
387 389 0.394899 GCAGCTTAGAGTTGGGCCAT 60.395 55.000 7.26 0.00 0.00 4.40
486 905 5.009610 CACAAAACAGCTTACCTAACCACAT 59.990 40.000 0.00 0.00 0.00 3.21
491 910 4.189231 CAGCTTACCTAACCACATACCAC 58.811 47.826 0.00 0.00 0.00 4.16
492 911 3.199289 AGCTTACCTAACCACATACCACC 59.801 47.826 0.00 0.00 0.00 4.61
493 912 3.788937 CTTACCTAACCACATACCACCG 58.211 50.000 0.00 0.00 0.00 4.94
494 913 1.941377 ACCTAACCACATACCACCGA 58.059 50.000 0.00 0.00 0.00 4.69
495 914 2.474112 ACCTAACCACATACCACCGAT 58.526 47.619 0.00 0.00 0.00 4.18
496 915 2.841881 ACCTAACCACATACCACCGATT 59.158 45.455 0.00 0.00 0.00 3.34
497 916 3.264964 ACCTAACCACATACCACCGATTT 59.735 43.478 0.00 0.00 0.00 2.17
498 917 3.875134 CCTAACCACATACCACCGATTTC 59.125 47.826 0.00 0.00 0.00 2.17
499 918 3.713826 AACCACATACCACCGATTTCT 57.286 42.857 0.00 0.00 0.00 2.52
500 919 3.261981 ACCACATACCACCGATTTCTC 57.738 47.619 0.00 0.00 0.00 2.87
501 920 2.569853 ACCACATACCACCGATTTCTCA 59.430 45.455 0.00 0.00 0.00 3.27
502 921 3.008594 ACCACATACCACCGATTTCTCAA 59.991 43.478 0.00 0.00 0.00 3.02
503 922 3.623060 CCACATACCACCGATTTCTCAAG 59.377 47.826 0.00 0.00 0.00 3.02
504 923 4.503910 CACATACCACCGATTTCTCAAGA 58.496 43.478 0.00 0.00 0.00 3.02
505 924 4.935205 CACATACCACCGATTTCTCAAGAA 59.065 41.667 0.00 0.00 0.00 2.52
506 925 5.411361 CACATACCACCGATTTCTCAAGAAA 59.589 40.000 7.59 7.59 46.60 2.52
507 926 5.411669 ACATACCACCGATTTCTCAAGAAAC 59.588 40.000 7.32 2.23 45.55 2.78
508 927 3.815809 ACCACCGATTTCTCAAGAAACA 58.184 40.909 7.32 0.00 45.55 2.83
509 928 3.564225 ACCACCGATTTCTCAAGAAACAC 59.436 43.478 7.32 4.84 45.55 3.32
510 929 3.563808 CCACCGATTTCTCAAGAAACACA 59.436 43.478 7.32 0.00 45.55 3.72
511 930 4.527564 CACCGATTTCTCAAGAAACACAC 58.472 43.478 7.32 0.66 45.55 3.82
512 931 4.035091 CACCGATTTCTCAAGAAACACACA 59.965 41.667 7.32 0.00 45.55 3.72
513 932 4.035208 ACCGATTTCTCAAGAAACACACAC 59.965 41.667 7.32 0.00 45.55 3.82
514 933 4.035091 CCGATTTCTCAAGAAACACACACA 59.965 41.667 7.32 0.00 45.55 3.72
515 934 4.963953 CGATTTCTCAAGAAACACACACAC 59.036 41.667 7.32 0.00 45.55 3.82
516 935 5.447144 CGATTTCTCAAGAAACACACACACA 60.447 40.000 7.32 0.00 45.55 3.72
517 936 4.678509 TTCTCAAGAAACACACACACAC 57.321 40.909 0.00 0.00 0.00 3.82
518 937 3.669536 TCTCAAGAAACACACACACACA 58.330 40.909 0.00 0.00 0.00 3.72
519 938 3.435327 TCTCAAGAAACACACACACACAC 59.565 43.478 0.00 0.00 0.00 3.82
520 939 3.142174 TCAAGAAACACACACACACACA 58.858 40.909 0.00 0.00 0.00 3.72
521 940 3.058570 TCAAGAAACACACACACACACAC 60.059 43.478 0.00 0.00 0.00 3.82
522 941 2.499197 AGAAACACACACACACACACA 58.501 42.857 0.00 0.00 0.00 3.72
523 942 2.225491 AGAAACACACACACACACACAC 59.775 45.455 0.00 0.00 0.00 3.82
524 943 0.515127 AACACACACACACACACACG 59.485 50.000 0.00 0.00 0.00 4.49
525 944 1.225991 CACACACACACACACACGC 60.226 57.895 0.00 0.00 0.00 5.34
526 945 1.669437 ACACACACACACACACGCA 60.669 52.632 0.00 0.00 0.00 5.24
527 946 1.225991 CACACACACACACACGCAC 60.226 57.895 0.00 0.00 0.00 5.34
528 947 2.021243 CACACACACACACGCACG 59.979 61.111 0.00 0.00 0.00 5.34
529 948 3.860125 ACACACACACACGCACGC 61.860 61.111 0.00 0.00 0.00 5.34
530 949 4.589700 CACACACACACGCACGCC 62.590 66.667 0.00 0.00 0.00 5.68
576 995 1.216977 CGACCCCGTTAGCATCACA 59.783 57.895 0.00 0.00 0.00 3.58
577 996 0.390603 CGACCCCGTTAGCATCACAA 60.391 55.000 0.00 0.00 0.00 3.33
578 997 1.816074 GACCCCGTTAGCATCACAAA 58.184 50.000 0.00 0.00 0.00 2.83
579 998 1.467342 GACCCCGTTAGCATCACAAAC 59.533 52.381 0.00 0.00 0.00 2.93
580 999 0.446222 CCCCGTTAGCATCACAAACG 59.554 55.000 0.00 0.00 44.13 3.60
601 1020 2.438434 GTCCAACCATCCCAGCCG 60.438 66.667 0.00 0.00 0.00 5.52
627 1060 2.409651 CTACTCGGAGGCGACTGC 59.590 66.667 10.23 0.00 46.81 4.40
739 1172 0.247460 GCCAACTCCCAGCCATTTTC 59.753 55.000 0.00 0.00 0.00 2.29
740 1173 0.897621 CCAACTCCCAGCCATTTTCC 59.102 55.000 0.00 0.00 0.00 3.13
764 1197 3.211045 CCTCTCCAGAAAACAAACGGAA 58.789 45.455 0.00 0.00 0.00 4.30
770 1203 6.026947 TCCAGAAAACAAACGGAAAAAGAA 57.973 33.333 0.00 0.00 0.00 2.52
829 1283 1.249407 GCGAGGAGGATCTTATCGGT 58.751 55.000 12.08 0.00 36.54 4.69
931 1385 1.748122 GACTGGGTGAGCAGGCATG 60.748 63.158 0.00 0.00 0.00 4.06
954 1708 3.450115 CCGGTCCTCGTCTCCACC 61.450 72.222 0.00 0.00 37.11 4.61
1052 1807 0.324275 AGGAGAGGAGAGGAGCACAC 60.324 60.000 0.00 0.00 0.00 3.82
1220 1994 1.428219 CGCTCCTTGCTCATGCTTG 59.572 57.895 0.00 0.00 40.48 4.01
1226 2000 0.957395 CTTGCTCATGCTTGGGTCGT 60.957 55.000 0.92 0.00 40.48 4.34
1227 2001 0.955428 TTGCTCATGCTTGGGTCGTC 60.955 55.000 0.92 0.00 40.48 4.20
1228 2002 2.456119 GCTCATGCTTGGGTCGTCG 61.456 63.158 0.92 0.00 36.03 5.12
1374 2152 1.302271 GAGGAGCGTCGGGGTTTTT 60.302 57.895 0.00 0.00 0.00 1.94
1378 2156 2.183858 GAGCGTCGGGGTTTTTGCTC 62.184 60.000 0.00 0.00 41.57 4.26
1381 2159 2.281900 TCGGGGTTTTTGCTCGGG 60.282 61.111 0.00 0.00 0.00 5.14
1400 2178 3.462169 TGCTCCGTCGGAGGAAAA 58.538 55.556 36.00 5.67 46.83 2.29
1401 2179 1.749665 TGCTCCGTCGGAGGAAAAA 59.250 52.632 36.00 4.92 46.83 1.94
1441 2226 1.638388 CTTCGCTTGCTCGGATTGCA 61.638 55.000 0.00 0.00 38.80 4.08
1667 2452 3.991051 CGTGGACTGGACGGTGCT 61.991 66.667 0.31 0.00 33.08 4.40
1668 2453 2.048127 GTGGACTGGACGGTGCTC 60.048 66.667 0.31 0.00 0.00 4.26
1683 2480 1.875514 GTGCTCAGTGCTGTGAATCAA 59.124 47.619 5.56 0.00 43.37 2.57
1690 2487 1.210155 GCTGTGAATCAACGTGGCC 59.790 57.895 0.00 0.00 0.00 5.36
2147 2953 8.177119 AGATCAGCTCTATTAGAGTAAACCAG 57.823 38.462 19.40 2.93 44.12 4.00
2149 2955 8.719645 ATCAGCTCTATTAGAGTAAACCAGAT 57.280 34.615 19.40 9.04 44.12 2.90
2236 3042 7.923888 CAGTTGTGCTATATGCTGTATTTCTT 58.076 34.615 0.00 0.00 43.37 2.52
2249 3055 7.092079 TGCTGTATTTCTTGTTCAAATCATGG 58.908 34.615 0.00 0.00 0.00 3.66
2414 3220 0.527817 CGGATAGAGCACCGGTTCAC 60.528 60.000 2.97 0.00 44.59 3.18
2478 3284 0.673985 GTTCTCTGTTTTGTGGGCCC 59.326 55.000 17.59 17.59 0.00 5.80
2712 3519 1.718396 CATGTGCGAGTCATCAGTGT 58.282 50.000 0.00 0.00 0.00 3.55
2765 3572 9.914131 CTTGCACATGCTTATAATAGTAGAGTA 57.086 33.333 5.31 0.00 42.66 2.59
2817 3625 8.768955 GTTTTTGGTGCAACATGACAAATTATA 58.231 29.630 4.62 0.00 39.98 0.98
2883 3693 5.164620 TGATTTGGCATTGTAGACTCTGA 57.835 39.130 0.00 0.00 0.00 3.27
2893 3703 5.599999 TTGTAGACTCTGATCTTTAGGCC 57.400 43.478 0.00 0.00 0.00 5.19
2937 3747 9.905713 AACCTGTAATGTTGTCTATGTGATATT 57.094 29.630 0.00 0.00 0.00 1.28
3009 3819 9.315525 TGCACAAATTGTCATGATTAATAATGG 57.684 29.630 12.16 0.00 0.00 3.16
3298 4108 1.915489 TGGGCTTTGAGGCTGATTAGA 59.085 47.619 0.00 0.00 41.09 2.10
3600 4411 2.894126 GCTACTCTTCCTATAGCCTGCA 59.106 50.000 0.00 0.00 36.18 4.41
3604 4415 3.831911 ACTCTTCCTATAGCCTGCAGATC 59.168 47.826 17.39 6.56 0.00 2.75
3685 4524 5.071788 GGGATATGTTACCCAGAATCTGTCA 59.928 44.000 9.63 1.44 44.96 3.58
3691 4530 5.163248 TGTTACCCAGAATCTGTCAGTCAAA 60.163 40.000 9.63 0.00 0.00 2.69
3862 4729 6.213600 TGAGAAGTAAGCTAGGAACTTCCATT 59.786 38.462 19.48 8.37 46.64 3.16
3872 4739 4.455606 AGGAACTTCCATTATGCTGTAGC 58.544 43.478 10.57 0.00 39.61 3.58
3887 4754 3.341823 CTGTAGCTTCTGGTTGCTGATT 58.658 45.455 0.00 0.00 40.08 2.57
3901 4768 0.388520 CTGATTCGTGCGACACTCCA 60.389 55.000 8.07 1.51 31.34 3.86
4081 4951 6.345298 TCTTTGTTGCATACTCGAATGGATA 58.655 36.000 0.00 0.00 0.00 2.59
4152 5022 9.553064 AAAATCCATATAGCTCACTAAAGACAG 57.447 33.333 0.00 0.00 30.45 3.51
4182 5052 2.498905 CGCATGTCGATGTGTTTTCTG 58.501 47.619 3.85 0.00 41.67 3.02
4191 5061 2.535934 TGTGTTTTCTGTTGTCGTGC 57.464 45.000 0.00 0.00 0.00 5.34
4299 5181 9.323985 AGCTTAGATACAAACTTTCTGATGATC 57.676 33.333 0.00 0.00 0.00 2.92
4346 5228 4.651503 ACAACCTGTGGATATCTCTTCGAT 59.348 41.667 2.05 0.00 36.11 3.59
4389 5271 8.519526 TGTTATTGGCTATCGTTTTCTTTTCAT 58.480 29.630 0.00 0.00 0.00 2.57
4458 5340 8.641541 CAAATAAATATGGTACCTTGCCTTGAT 58.358 33.333 14.36 0.00 0.00 2.57
4534 5416 1.283029 CATGTTGACCCTGGTGGATCT 59.717 52.381 0.00 0.00 38.00 2.75
4551 5433 2.791347 TCTTCTCTAGGAGCTCGTGT 57.209 50.000 18.96 3.16 0.00 4.49
4558 5440 1.877576 TAGGAGCTCGTGTGTGCCTG 61.878 60.000 18.96 0.00 35.20 4.85
4629 5513 5.233988 GCAACTACTCTGCTCCTAATATGG 58.766 45.833 0.00 0.00 36.84 2.74
4882 5773 2.956132 TGCTTTCTGGATTTTGGGTCA 58.044 42.857 0.00 0.00 0.00 4.02
4890 5782 5.147032 TCTGGATTTTGGGTCATGTTTTCT 58.853 37.500 0.00 0.00 0.00 2.52
5037 5929 0.684535 TTTGGTGATCCGAGCTGTCA 59.315 50.000 0.00 0.00 36.30 3.58
5082 5996 3.517901 TGTTGAGTAATCCATCTTCCGGT 59.482 43.478 0.00 0.00 0.00 5.28
5190 6104 1.349688 GTCCGGGCATTATGGGTGATA 59.650 52.381 0.00 0.00 0.00 2.15
5229 6143 3.006940 GTTGCGTGTAATCCCATGAAGA 58.993 45.455 0.00 0.00 0.00 2.87
5262 6176 1.961277 GGTCTGGTTGTGACAGCGG 60.961 63.158 0.00 0.00 36.26 5.52
5280 6194 1.272490 CGGAGCCACACTTGAGACTTA 59.728 52.381 0.00 0.00 0.00 2.24
5298 6212 5.180680 AGACTTAATCAAGCGGTTTTGGTAC 59.819 40.000 0.00 0.00 34.94 3.34
5299 6213 5.067954 ACTTAATCAAGCGGTTTTGGTACT 58.932 37.500 0.00 0.00 34.94 2.73
5301 6215 6.882678 ACTTAATCAAGCGGTTTTGGTACTAT 59.117 34.615 0.00 0.00 34.94 2.12
5302 6216 5.560966 AATCAAGCGGTTTTGGTACTATG 57.439 39.130 0.00 0.00 0.00 2.23
5303 6217 4.274602 TCAAGCGGTTTTGGTACTATGA 57.725 40.909 0.00 0.00 0.00 2.15
5304 6218 4.643463 TCAAGCGGTTTTGGTACTATGAA 58.357 39.130 0.00 0.00 0.00 2.57
5305 6219 5.064558 TCAAGCGGTTTTGGTACTATGAAA 58.935 37.500 0.00 0.00 0.00 2.69
5307 6221 5.560966 AGCGGTTTTGGTACTATGAAATG 57.439 39.130 0.00 0.00 0.00 2.32
5308 6222 4.398044 AGCGGTTTTGGTACTATGAAATGG 59.602 41.667 0.00 0.00 0.00 3.16
5309 6223 4.157105 GCGGTTTTGGTACTATGAAATGGT 59.843 41.667 0.00 0.00 42.37 3.55
5310 6224 5.636837 CGGTTTTGGTACTATGAAATGGTG 58.363 41.667 0.00 0.00 38.96 4.17
5325 6239 2.358003 GTGGCGCTGCTCTCTTGT 60.358 61.111 7.64 0.00 0.00 3.16
5390 6304 3.492421 AGCACATTTACTCGGCAATTG 57.508 42.857 0.00 0.00 0.00 2.32
5471 6386 4.737765 GCAATTTTAGAACGCACAACTTCA 59.262 37.500 0.00 0.00 0.00 3.02
5478 6393 2.433868 ACGCACAACTTCAGTCGTAT 57.566 45.000 0.00 0.00 0.00 3.06
5488 6403 5.731599 ACTTCAGTCGTATAGTCGTAAGG 57.268 43.478 0.00 0.00 38.47 2.69
5500 6415 2.338500 GTCGTAAGGCTGAGGTCTTTG 58.662 52.381 0.00 0.00 38.46 2.77
5513 6428 6.510317 GCTGAGGTCTTTGCGATAATTTAGTC 60.510 42.308 0.00 0.00 0.00 2.59
5516 6432 5.873164 AGGTCTTTGCGATAATTTAGTCGTT 59.127 36.000 8.64 0.00 39.87 3.85
5521 6437 5.712217 TGCGATAATTTAGTCGTTTGAGG 57.288 39.130 8.64 0.00 39.87 3.86
5536 6452 7.023575 GTCGTTTGAGGTATTCTTACGTCTTA 58.976 38.462 0.00 0.00 41.59 2.10
5540 6456 9.583765 GTTTGAGGTATTCTTACGTCTTAAGAT 57.416 33.333 8.75 0.00 44.71 2.40
5618 6535 5.811190 TCGGTGATAGAAAAGGAATTGGAA 58.189 37.500 0.00 0.00 0.00 3.53
5631 6548 3.063861 GGAATTGGAATTGCATTTTCCGC 59.936 43.478 19.48 10.97 44.67 5.54
5664 6585 9.706691 ACTTAGACGTAAGAAAATCTCAAATGA 57.293 29.630 5.10 0.00 38.39 2.57
5670 6591 9.755064 ACGTAAGAAAATCTCAAATGATTTACG 57.245 29.630 15.31 15.31 43.16 3.18
5671 6592 9.967245 CGTAAGAAAATCTCAAATGATTTACGA 57.033 29.630 13.23 0.00 43.40 3.43
5675 6596 9.793252 AGAAAATCTCAAATGATTTACGATTGG 57.207 29.630 11.89 0.00 43.40 3.16
5676 6597 9.787532 GAAAATCTCAAATGATTTACGATTGGA 57.212 29.630 11.89 0.00 43.40 3.53
5678 6599 9.793252 AAATCTCAAATGATTTACGATTGGAAG 57.207 29.630 11.89 0.00 42.68 3.46
5679 6600 6.785191 TCTCAAATGATTTACGATTGGAAGC 58.215 36.000 0.00 0.00 0.00 3.86
5680 6601 6.374053 TCTCAAATGATTTACGATTGGAAGCA 59.626 34.615 0.00 0.00 0.00 3.91
5681 6602 6.321717 TCAAATGATTTACGATTGGAAGCAC 58.678 36.000 0.00 0.00 0.00 4.40
5682 6603 6.150976 TCAAATGATTTACGATTGGAAGCACT 59.849 34.615 0.00 0.00 0.00 4.40
5683 6604 6.515272 AATGATTTACGATTGGAAGCACTT 57.485 33.333 0.00 0.00 0.00 3.16
5684 6605 7.624360 AATGATTTACGATTGGAAGCACTTA 57.376 32.000 0.00 0.00 0.00 2.24
5685 6606 7.807977 ATGATTTACGATTGGAAGCACTTAT 57.192 32.000 0.00 0.00 0.00 1.73
5686 6607 7.015226 TGATTTACGATTGGAAGCACTTATG 57.985 36.000 0.00 0.00 0.00 1.90
5687 6608 6.597672 TGATTTACGATTGGAAGCACTTATGT 59.402 34.615 0.00 0.00 0.00 2.29
5688 6609 5.794687 TTACGATTGGAAGCACTTATGTG 57.205 39.130 4.42 4.42 46.37 3.21
5689 6610 3.937814 ACGATTGGAAGCACTTATGTGA 58.062 40.909 12.65 0.00 46.55 3.58
5690 6611 4.323417 ACGATTGGAAGCACTTATGTGAA 58.677 39.130 12.65 0.00 46.55 3.18
5693 6614 6.071952 ACGATTGGAAGCACTTATGTGAAAAT 60.072 34.615 12.65 4.36 46.55 1.82
5695 6616 7.201376 CGATTGGAAGCACTTATGTGAAAATTG 60.201 37.037 12.65 4.75 46.55 2.32
5704 6625 8.928733 GCACTTATGTGAAAATTGAAATCATGT 58.071 29.630 12.65 0.00 46.55 3.21
5710 6631 7.270779 TGTGAAAATTGAAATCATGTGTCCAA 58.729 30.769 0.00 0.00 0.00 3.53
5717 6638 5.184711 TGAAATCATGTGTCCAATCGATCA 58.815 37.500 0.00 0.00 0.00 2.92
5721 6642 4.436332 TCATGTGTCCAATCGATCAGAAG 58.564 43.478 0.00 0.00 0.00 2.85
5722 6643 3.251479 TGTGTCCAATCGATCAGAAGG 57.749 47.619 0.00 0.00 0.00 3.46
5724 6645 2.168521 GTGTCCAATCGATCAGAAGGGA 59.831 50.000 0.00 0.00 34.17 4.20
5730 6651 1.203237 TCGATCAGAAGGGAATGGCA 58.797 50.000 0.00 0.00 0.00 4.92
5731 6652 1.134401 TCGATCAGAAGGGAATGGCAC 60.134 52.381 0.00 0.00 0.00 5.01
5746 6667 1.999051 GCACTGAGCCGTTGTATCG 59.001 57.895 0.00 0.00 37.23 2.92
5766 6687 2.349060 CGAAAACGAACAAATCCGAGCA 60.349 45.455 0.00 0.00 0.00 4.26
5767 6688 3.623863 GAAAACGAACAAATCCGAGCAA 58.376 40.909 0.00 0.00 0.00 3.91
5768 6689 2.681152 AACGAACAAATCCGAGCAAC 57.319 45.000 0.00 0.00 0.00 4.17
5769 6690 1.588674 ACGAACAAATCCGAGCAACA 58.411 45.000 0.00 0.00 0.00 3.33
5770 6691 1.944024 ACGAACAAATCCGAGCAACAA 59.056 42.857 0.00 0.00 0.00 2.83
5771 6692 2.356382 ACGAACAAATCCGAGCAACAAA 59.644 40.909 0.00 0.00 0.00 2.83
5772 6693 2.719046 CGAACAAATCCGAGCAACAAAC 59.281 45.455 0.00 0.00 0.00 2.93
5773 6694 3.701241 GAACAAATCCGAGCAACAAACA 58.299 40.909 0.00 0.00 0.00 2.83
5774 6695 4.298332 GAACAAATCCGAGCAACAAACAT 58.702 39.130 0.00 0.00 0.00 2.71
5776 6697 5.643379 ACAAATCCGAGCAACAAACATAT 57.357 34.783 0.00 0.00 0.00 1.78
5777 6698 6.024552 ACAAATCCGAGCAACAAACATATT 57.975 33.333 0.00 0.00 0.00 1.28
5778 6699 6.092748 ACAAATCCGAGCAACAAACATATTC 58.907 36.000 0.00 0.00 0.00 1.75
5780 6701 5.895636 ATCCGAGCAACAAACATATTCAA 57.104 34.783 0.00 0.00 0.00 2.69
5782 6703 3.853671 CCGAGCAACAAACATATTCAAGC 59.146 43.478 0.00 0.00 0.00 4.01
5783 6704 4.379813 CCGAGCAACAAACATATTCAAGCT 60.380 41.667 0.00 0.00 0.00 3.74
5784 6705 4.556135 CGAGCAACAAACATATTCAAGCTG 59.444 41.667 0.00 0.00 0.00 4.24
5785 6706 5.458041 AGCAACAAACATATTCAAGCTGT 57.542 34.783 0.00 0.00 0.00 4.40
5786 6707 5.846203 AGCAACAAACATATTCAAGCTGTT 58.154 33.333 0.00 0.00 34.71 3.16
5787 6708 6.282930 AGCAACAAACATATTCAAGCTGTTT 58.717 32.000 0.00 0.00 42.24 2.83
5788 6709 6.421801 AGCAACAAACATATTCAAGCTGTTTC 59.578 34.615 0.00 0.00 40.19 2.78
5821 6754 1.201647 CGGTGAGGTCGCTTTCTTCTA 59.798 52.381 0.00 0.00 0.00 2.10
5823 6756 2.608268 GTGAGGTCGCTTTCTTCTACC 58.392 52.381 0.00 0.00 0.00 3.18
5828 6761 2.417515 GGTCGCTTTCTTCTACCTCCTG 60.418 54.545 0.00 0.00 0.00 3.86
5834 6767 2.344093 TCTTCTACCTCCTGCCCTTT 57.656 50.000 0.00 0.00 0.00 3.11
5835 6768 2.188817 TCTTCTACCTCCTGCCCTTTC 58.811 52.381 0.00 0.00 0.00 2.62
5836 6769 2.192263 CTTCTACCTCCTGCCCTTTCT 58.808 52.381 0.00 0.00 0.00 2.52
5837 6770 1.867363 TCTACCTCCTGCCCTTTCTC 58.133 55.000 0.00 0.00 0.00 2.87
5838 6771 1.362932 TCTACCTCCTGCCCTTTCTCT 59.637 52.381 0.00 0.00 0.00 3.10
5839 6772 1.760029 CTACCTCCTGCCCTTTCTCTC 59.240 57.143 0.00 0.00 0.00 3.20
5840 6773 0.118144 ACCTCCTGCCCTTTCTCTCT 59.882 55.000 0.00 0.00 0.00 3.10
5841 6774 0.829990 CCTCCTGCCCTTTCTCTCTC 59.170 60.000 0.00 0.00 0.00 3.20
5842 6775 1.622173 CCTCCTGCCCTTTCTCTCTCT 60.622 57.143 0.00 0.00 0.00 3.10
5843 6776 2.187100 CTCCTGCCCTTTCTCTCTCTT 58.813 52.381 0.00 0.00 0.00 2.85
5844 6777 2.571202 CTCCTGCCCTTTCTCTCTCTTT 59.429 50.000 0.00 0.00 0.00 2.52
5845 6778 2.304180 TCCTGCCCTTTCTCTCTCTTTG 59.696 50.000 0.00 0.00 0.00 2.77
5846 6779 2.039613 CCTGCCCTTTCTCTCTCTTTGT 59.960 50.000 0.00 0.00 0.00 2.83
5847 6780 3.072944 CTGCCCTTTCTCTCTCTTTGTG 58.927 50.000 0.00 0.00 0.00 3.33
5848 6781 2.439507 TGCCCTTTCTCTCTCTTTGTGT 59.560 45.455 0.00 0.00 0.00 3.72
5849 6782 3.646162 TGCCCTTTCTCTCTCTTTGTGTA 59.354 43.478 0.00 0.00 0.00 2.90
5850 6783 4.287067 TGCCCTTTCTCTCTCTTTGTGTAT 59.713 41.667 0.00 0.00 0.00 2.29
5851 6784 5.483937 TGCCCTTTCTCTCTCTTTGTGTATA 59.516 40.000 0.00 0.00 0.00 1.47
5852 6785 6.156949 TGCCCTTTCTCTCTCTTTGTGTATAT 59.843 38.462 0.00 0.00 0.00 0.86
5853 6786 6.481644 GCCCTTTCTCTCTCTTTGTGTATATG 59.518 42.308 0.00 0.00 0.00 1.78
5854 6787 7.560368 CCCTTTCTCTCTCTTTGTGTATATGT 58.440 38.462 0.00 0.00 0.00 2.29
5855 6788 7.708752 CCCTTTCTCTCTCTTTGTGTATATGTC 59.291 40.741 0.00 0.00 0.00 3.06
5856 6789 8.474025 CCTTTCTCTCTCTTTGTGTATATGTCT 58.526 37.037 0.00 0.00 0.00 3.41
5857 6790 9.299963 CTTTCTCTCTCTTTGTGTATATGTCTG 57.700 37.037 0.00 0.00 0.00 3.51
5858 6791 7.340122 TCTCTCTCTTTGTGTATATGTCTGG 57.660 40.000 0.00 0.00 0.00 3.86
5859 6792 5.907207 TCTCTCTTTGTGTATATGTCTGGC 58.093 41.667 0.00 0.00 0.00 4.85
5860 6793 5.023533 TCTCTTTGTGTATATGTCTGGCC 57.976 43.478 0.00 0.00 0.00 5.36
5861 6794 4.716784 TCTCTTTGTGTATATGTCTGGCCT 59.283 41.667 3.32 0.00 0.00 5.19
5862 6795 4.769688 TCTTTGTGTATATGTCTGGCCTG 58.230 43.478 3.32 2.92 0.00 4.85
5863 6796 4.469586 TCTTTGTGTATATGTCTGGCCTGA 59.530 41.667 8.48 8.48 0.00 3.86
5864 6797 5.130975 TCTTTGTGTATATGTCTGGCCTGAT 59.869 40.000 16.12 3.21 0.00 2.90
5865 6798 5.372343 TTGTGTATATGTCTGGCCTGATT 57.628 39.130 16.12 9.16 0.00 2.57
5866 6799 4.707105 TGTGTATATGTCTGGCCTGATTG 58.293 43.478 16.12 0.00 0.00 2.67
5867 6800 3.499918 GTGTATATGTCTGGCCTGATTGC 59.500 47.826 16.12 3.72 0.00 3.56
5868 6801 1.888215 ATATGTCTGGCCTGATTGCG 58.112 50.000 16.12 0.00 0.00 4.85
5869 6802 0.815213 TATGTCTGGCCTGATTGCGC 60.815 55.000 16.12 0.00 0.00 6.09
5870 6803 3.512516 GTCTGGCCTGATTGCGCC 61.513 66.667 16.12 0.00 45.92 6.53
5884 6817 4.375723 CGCCGCAACGCATTATTT 57.624 50.000 0.00 0.00 0.00 1.40
5885 6818 2.194733 CGCCGCAACGCATTATTTC 58.805 52.632 0.00 0.00 0.00 2.17
5886 6819 1.199852 CGCCGCAACGCATTATTTCC 61.200 55.000 0.00 0.00 0.00 3.13
5887 6820 0.869880 GCCGCAACGCATTATTTCCC 60.870 55.000 0.00 0.00 0.00 3.97
5888 6821 0.738389 CCGCAACGCATTATTTCCCT 59.262 50.000 0.00 0.00 0.00 4.20
5889 6822 1.268539 CCGCAACGCATTATTTCCCTC 60.269 52.381 0.00 0.00 0.00 4.30
5890 6823 1.400142 CGCAACGCATTATTTCCCTCA 59.600 47.619 0.00 0.00 0.00 3.86
5891 6824 2.791158 CGCAACGCATTATTTCCCTCAC 60.791 50.000 0.00 0.00 0.00 3.51
5892 6825 2.423538 GCAACGCATTATTTCCCTCACT 59.576 45.455 0.00 0.00 0.00 3.41
5893 6826 3.487544 GCAACGCATTATTTCCCTCACTC 60.488 47.826 0.00 0.00 0.00 3.51
5894 6827 2.919228 ACGCATTATTTCCCTCACTCC 58.081 47.619 0.00 0.00 0.00 3.85
5895 6828 2.222027 CGCATTATTTCCCTCACTCCC 58.778 52.381 0.00 0.00 0.00 4.30
5896 6829 2.158755 CGCATTATTTCCCTCACTCCCT 60.159 50.000 0.00 0.00 0.00 4.20
5897 6830 3.481453 GCATTATTTCCCTCACTCCCTC 58.519 50.000 0.00 0.00 0.00 4.30
5898 6831 3.117888 GCATTATTTCCCTCACTCCCTCA 60.118 47.826 0.00 0.00 0.00 3.86
5899 6832 4.628715 GCATTATTTCCCTCACTCCCTCAA 60.629 45.833 0.00 0.00 0.00 3.02
5900 6833 4.569719 TTATTTCCCTCACTCCCTCAAC 57.430 45.455 0.00 0.00 0.00 3.18
5901 6834 2.118403 TTTCCCTCACTCCCTCAACT 57.882 50.000 0.00 0.00 0.00 3.16
5902 6835 1.352083 TTCCCTCACTCCCTCAACTG 58.648 55.000 0.00 0.00 0.00 3.16
5903 6836 0.487325 TCCCTCACTCCCTCAACTGA 59.513 55.000 0.00 0.00 0.00 3.41
5904 6837 0.901124 CCCTCACTCCCTCAACTGAG 59.099 60.000 0.00 0.00 41.71 3.35
5928 6861 5.774498 TCATGTATGACATCGAGCTTAGT 57.226 39.130 0.00 0.00 36.53 2.24
5929 6862 6.877611 TCATGTATGACATCGAGCTTAGTA 57.122 37.500 0.00 0.00 36.53 1.82
5930 6863 6.903419 TCATGTATGACATCGAGCTTAGTAG 58.097 40.000 0.00 0.00 36.53 2.57
5931 6864 5.570973 CATGTATGACATCGAGCTTAGTAGC 59.429 44.000 0.00 0.00 41.45 3.58
5933 6866 6.655425 ATGTATGACATCGAGCTTAGTAGCTA 59.345 38.462 0.00 0.00 46.21 3.32
5934 6867 7.148323 ATGTATGACATCGAGCTTAGTAGCTAG 60.148 40.741 0.00 0.25 46.21 3.42
5947 6880 7.976826 GCTTAGTAGCTAGCTATCTAATTCGA 58.023 38.462 28.02 16.66 44.27 3.71
5948 6881 8.120465 GCTTAGTAGCTAGCTATCTAATTCGAG 58.880 40.741 28.02 21.95 44.27 4.04
5949 6882 9.158233 CTTAGTAGCTAGCTATCTAATTCGAGT 57.842 37.037 28.02 14.34 30.15 4.18
5950 6883 7.372451 AGTAGCTAGCTATCTAATTCGAGTG 57.628 40.000 26.59 0.00 0.00 3.51
5951 6884 5.637006 AGCTAGCTATCTAATTCGAGTGG 57.363 43.478 17.69 0.00 0.00 4.00
5952 6885 4.082463 AGCTAGCTATCTAATTCGAGTGGC 60.082 45.833 17.69 0.00 0.00 5.01
5953 6886 4.321304 GCTAGCTATCTAATTCGAGTGGCA 60.321 45.833 7.70 0.00 0.00 4.92
5954 6887 4.672587 AGCTATCTAATTCGAGTGGCAA 57.327 40.909 0.00 0.00 0.00 4.52
5955 6888 5.220710 AGCTATCTAATTCGAGTGGCAAT 57.779 39.130 0.00 0.00 0.00 3.56
5956 6889 4.993584 AGCTATCTAATTCGAGTGGCAATG 59.006 41.667 0.00 0.00 0.00 2.82
5957 6890 4.153117 GCTATCTAATTCGAGTGGCAATGG 59.847 45.833 0.00 0.00 0.00 3.16
5958 6891 3.904800 TCTAATTCGAGTGGCAATGGA 57.095 42.857 0.00 0.00 0.00 3.41
5959 6892 4.214986 TCTAATTCGAGTGGCAATGGAA 57.785 40.909 14.42 14.42 0.00 3.53
5960 6893 4.584874 TCTAATTCGAGTGGCAATGGAAA 58.415 39.130 15.88 0.59 0.00 3.13
5961 6894 3.855689 AATTCGAGTGGCAATGGAAAG 57.144 42.857 15.88 0.00 0.00 2.62
5962 6895 1.533625 TTCGAGTGGCAATGGAAAGG 58.466 50.000 9.92 0.00 0.00 3.11
5963 6896 0.322456 TCGAGTGGCAATGGAAAGGG 60.322 55.000 0.00 0.00 0.00 3.95
5964 6897 0.322456 CGAGTGGCAATGGAAAGGGA 60.322 55.000 0.00 0.00 0.00 4.20
5965 6898 1.886222 CGAGTGGCAATGGAAAGGGAA 60.886 52.381 0.00 0.00 0.00 3.97
5966 6899 2.247358 GAGTGGCAATGGAAAGGGAAA 58.753 47.619 0.00 0.00 0.00 3.13
5967 6900 2.632512 GAGTGGCAATGGAAAGGGAAAA 59.367 45.455 0.00 0.00 0.00 2.29
5968 6901 3.250617 AGTGGCAATGGAAAGGGAAAAT 58.749 40.909 0.00 0.00 0.00 1.82
5969 6902 3.008266 AGTGGCAATGGAAAGGGAAAATG 59.992 43.478 0.00 0.00 0.00 2.32
5970 6903 2.290197 TGGCAATGGAAAGGGAAAATGC 60.290 45.455 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.529992 GCTCAAACGCTACGGGCTAT 60.530 55.000 1.54 0.00 39.13 2.97
33 34 4.631131 TGATTGGTGCACCTATCGAATAG 58.369 43.478 37.75 0.00 46.60 1.73
38 39 2.095853 GTGTTGATTGGTGCACCTATCG 59.904 50.000 37.75 0.00 46.60 2.92
45 46 0.184692 TGAGGGTGTTGATTGGTGCA 59.815 50.000 0.00 0.00 0.00 4.57
104 106 0.960364 CGTTGGCTGCCACACCTATT 60.960 55.000 23.30 0.00 30.78 1.73
247 249 5.065218 GGTGCATTCGTTTTCTCACATCTAT 59.935 40.000 0.00 0.00 0.00 1.98
254 256 0.871722 CGGGTGCATTCGTTTTCTCA 59.128 50.000 0.00 0.00 0.00 3.27
387 389 0.516877 CCGCAAGACATTTTCTCGCA 59.483 50.000 0.00 0.00 33.34 5.10
486 905 4.753107 GTGTTTCTTGAGAAATCGGTGGTA 59.247 41.667 9.20 0.00 44.69 3.25
491 910 4.035091 TGTGTGTGTTTCTTGAGAAATCGG 59.965 41.667 9.20 0.00 44.69 4.18
492 911 4.963953 GTGTGTGTGTTTCTTGAGAAATCG 59.036 41.667 9.20 0.00 44.69 3.34
493 912 5.739161 GTGTGTGTGTGTTTCTTGAGAAATC 59.261 40.000 9.20 6.96 44.69 2.17
494 913 5.182950 TGTGTGTGTGTGTTTCTTGAGAAAT 59.817 36.000 9.20 0.00 44.69 2.17
495 914 4.517075 TGTGTGTGTGTGTTTCTTGAGAAA 59.483 37.500 2.16 2.16 41.29 2.52
496 915 4.068599 TGTGTGTGTGTGTTTCTTGAGAA 58.931 39.130 0.00 0.00 0.00 2.87
497 916 3.435327 GTGTGTGTGTGTGTTTCTTGAGA 59.565 43.478 0.00 0.00 0.00 3.27
498 917 3.188254 TGTGTGTGTGTGTGTTTCTTGAG 59.812 43.478 0.00 0.00 0.00 3.02
499 918 3.058570 GTGTGTGTGTGTGTGTTTCTTGA 60.059 43.478 0.00 0.00 0.00 3.02
500 919 3.233578 GTGTGTGTGTGTGTGTTTCTTG 58.766 45.455 0.00 0.00 0.00 3.02
501 920 2.881513 TGTGTGTGTGTGTGTGTTTCTT 59.118 40.909 0.00 0.00 0.00 2.52
502 921 2.225491 GTGTGTGTGTGTGTGTGTTTCT 59.775 45.455 0.00 0.00 0.00 2.52
503 922 2.580589 GTGTGTGTGTGTGTGTGTTTC 58.419 47.619 0.00 0.00 0.00 2.78
504 923 1.069568 CGTGTGTGTGTGTGTGTGTTT 60.070 47.619 0.00 0.00 0.00 2.83
505 924 0.515127 CGTGTGTGTGTGTGTGTGTT 59.485 50.000 0.00 0.00 0.00 3.32
506 925 1.906994 GCGTGTGTGTGTGTGTGTGT 61.907 55.000 0.00 0.00 0.00 3.72
507 926 1.225991 GCGTGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
508 927 1.669437 TGCGTGTGTGTGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
509 928 1.225991 GTGCGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
510 929 2.735677 CGTGCGTGTGTGTGTGTGT 61.736 57.895 0.00 0.00 0.00 3.72
511 930 2.021243 CGTGCGTGTGTGTGTGTG 59.979 61.111 0.00 0.00 0.00 3.82
512 931 3.860125 GCGTGCGTGTGTGTGTGT 61.860 61.111 0.00 0.00 0.00 3.72
513 932 4.589700 GGCGTGCGTGTGTGTGTG 62.590 66.667 0.00 0.00 0.00 3.82
515 934 3.578089 GATGGCGTGCGTGTGTGTG 62.578 63.158 0.00 0.00 0.00 3.82
516 935 3.345808 GATGGCGTGCGTGTGTGT 61.346 61.111 0.00 0.00 0.00 3.72
517 936 4.428922 CGATGGCGTGCGTGTGTG 62.429 66.667 0.00 0.00 0.00 3.82
525 944 3.250323 CTCGACAGCGATGGCGTG 61.250 66.667 29.89 23.42 46.80 5.34
526 945 3.685214 GACTCGACAGCGATGGCGT 62.685 63.158 29.89 10.96 46.80 5.68
527 946 2.951745 GACTCGACAGCGATGGCG 60.952 66.667 25.56 25.56 46.80 5.69
528 947 1.014044 TTTGACTCGACAGCGATGGC 61.014 55.000 5.32 0.00 46.80 4.40
529 948 0.994995 CTTTGACTCGACAGCGATGG 59.005 55.000 5.32 0.00 46.80 3.51
530 949 0.368227 GCTTTGACTCGACAGCGATG 59.632 55.000 0.00 0.00 46.80 3.84
531 950 0.737715 GGCTTTGACTCGACAGCGAT 60.738 55.000 0.00 0.00 46.80 4.58
566 985 4.130857 TGGACTTTCGTTTGTGATGCTAA 58.869 39.130 0.00 0.00 0.00 3.09
576 995 2.235891 GGGATGGTTGGACTTTCGTTT 58.764 47.619 0.00 0.00 0.00 3.60
577 996 1.144093 TGGGATGGTTGGACTTTCGTT 59.856 47.619 0.00 0.00 0.00 3.85
578 997 0.768622 TGGGATGGTTGGACTTTCGT 59.231 50.000 0.00 0.00 0.00 3.85
579 998 1.453155 CTGGGATGGTTGGACTTTCG 58.547 55.000 0.00 0.00 0.00 3.46
580 999 1.177401 GCTGGGATGGTTGGACTTTC 58.823 55.000 0.00 0.00 0.00 2.62
601 1020 2.043248 TCCGAGTAGGGGCTGGTC 60.043 66.667 0.00 0.00 41.52 4.02
671 1104 2.125106 GGACACGTGGATCTGGGC 60.125 66.667 21.57 0.00 0.00 5.36
718 1151 2.424842 AAATGGCTGGGAGTTGGCGA 62.425 55.000 0.00 0.00 0.00 5.54
719 1152 1.535204 AAAATGGCTGGGAGTTGGCG 61.535 55.000 0.00 0.00 0.00 5.69
720 1153 0.247460 GAAAATGGCTGGGAGTTGGC 59.753 55.000 0.00 0.00 0.00 4.52
721 1154 0.897621 GGAAAATGGCTGGGAGTTGG 59.102 55.000 0.00 0.00 0.00 3.77
722 1155 0.897621 GGGAAAATGGCTGGGAGTTG 59.102 55.000 0.00 0.00 0.00 3.16
723 1156 0.252239 GGGGAAAATGGCTGGGAGTT 60.252 55.000 0.00 0.00 0.00 3.01
724 1157 1.388133 GGGGAAAATGGCTGGGAGT 59.612 57.895 0.00 0.00 0.00 3.85
725 1158 1.381735 GGGGGAAAATGGCTGGGAG 60.382 63.158 0.00 0.00 0.00 4.30
726 1159 2.777146 GGGGGAAAATGGCTGGGA 59.223 61.111 0.00 0.00 0.00 4.37
740 1173 2.239400 GTTTGTTTTCTGGAGAGGGGG 58.761 52.381 0.00 0.00 0.00 5.40
813 1267 3.226777 CTGACACCGATAAGATCCTCCT 58.773 50.000 0.00 0.00 0.00 3.69
829 1283 2.646175 GGACGGGTGCTAGCTGACA 61.646 63.158 17.23 0.00 0.00 3.58
897 1351 1.555533 CAGTCAAACCTACTCCCTCCC 59.444 57.143 0.00 0.00 0.00 4.30
898 1352 1.555533 CCAGTCAAACCTACTCCCTCC 59.444 57.143 0.00 0.00 0.00 4.30
899 1353 1.555533 CCCAGTCAAACCTACTCCCTC 59.444 57.143 0.00 0.00 0.00 4.30
900 1354 1.132495 ACCCAGTCAAACCTACTCCCT 60.132 52.381 0.00 0.00 0.00 4.20
954 1708 2.752358 TCTGCAAGAGTGGCCTGG 59.248 61.111 3.32 0.00 38.67 4.45
1205 1971 0.322816 GACCCAAGCATGAGCAAGGA 60.323 55.000 0.00 0.00 45.49 3.36
1208 1981 0.955428 GACGACCCAAGCATGAGCAA 60.955 55.000 0.00 0.00 45.49 3.91
1220 1994 2.794028 GGAGGGGAATCGACGACCC 61.794 68.421 13.83 13.83 43.69 4.46
1226 2000 1.384082 GGAAGGGGAGGGGAATCGA 60.384 63.158 0.00 0.00 0.00 3.59
1227 2001 2.452937 GGGAAGGGGAGGGGAATCG 61.453 68.421 0.00 0.00 0.00 3.34
1228 2002 2.085562 GGGGAAGGGGAGGGGAATC 61.086 68.421 0.00 0.00 0.00 2.52
1341 2116 2.736826 CCTCCCGCTTCCTCCTTCC 61.737 68.421 0.00 0.00 0.00 3.46
1343 2121 1.687493 CTCCTCCCGCTTCCTCCTT 60.687 63.158 0.00 0.00 0.00 3.36
1400 2178 0.466739 AAACCCGCGACCTCCTTTTT 60.467 50.000 8.23 0.00 0.00 1.94
1401 2179 0.466739 AAAACCCGCGACCTCCTTTT 60.467 50.000 8.23 0.00 0.00 2.27
1402 2180 1.149854 AAAACCCGCGACCTCCTTT 59.850 52.632 8.23 0.00 0.00 3.11
1403 2181 1.599797 CAAAACCCGCGACCTCCTT 60.600 57.895 8.23 0.00 0.00 3.36
1404 2182 2.032071 CAAAACCCGCGACCTCCT 59.968 61.111 8.23 0.00 0.00 3.69
1405 2183 3.733960 GCAAAACCCGCGACCTCC 61.734 66.667 8.23 0.00 0.00 4.30
1406 2184 2.183858 GAAGCAAAACCCGCGACCTC 62.184 60.000 8.23 0.00 0.00 3.85
1407 2185 2.203294 AAGCAAAACCCGCGACCT 60.203 55.556 8.23 0.00 0.00 3.85
1441 2226 0.251253 AGGAAGACGACGAACCTCCT 60.251 55.000 0.00 6.51 0.00 3.69
1578 2363 0.693049 TTGTCCCCTTCCTCTTCTGC 59.307 55.000 0.00 0.00 0.00 4.26
1581 2366 0.621082 CCCTTGTCCCCTTCCTCTTC 59.379 60.000 0.00 0.00 0.00 2.87
1654 2439 1.373497 CACTGAGCACCGTCCAGTC 60.373 63.158 0.00 0.00 38.93 3.51
1666 2451 2.096565 CACGTTGATTCACAGCACTGAG 60.097 50.000 4.31 0.00 0.00 3.35
1667 2452 1.866601 CACGTTGATTCACAGCACTGA 59.133 47.619 4.31 0.00 0.00 3.41
1668 2453 1.069703 CCACGTTGATTCACAGCACTG 60.070 52.381 0.00 0.00 0.00 3.66
1683 2480 1.956629 AATTCCGATCGAGGCCACGT 61.957 55.000 22.14 9.77 34.70 4.49
1690 2487 3.733224 CAGACAGCTAAATTCCGATCGAG 59.267 47.826 18.66 5.73 0.00 4.04
1911 2715 0.471617 CACCCTTATCCCCTGCAGAG 59.528 60.000 17.39 0.01 0.00 3.35
2147 2953 6.113411 ACTGTACAGGCACCTTGTTATTATC 58.887 40.000 26.12 0.00 0.00 1.75
2149 2955 5.492855 ACTGTACAGGCACCTTGTTATTA 57.507 39.130 26.12 0.00 0.00 0.98
2276 3082 7.016268 TCTCATACCCTACAAAGAAACAAGTCT 59.984 37.037 0.00 0.00 0.00 3.24
2278 3084 7.016268 TCTCTCATACCCTACAAAGAAACAAGT 59.984 37.037 0.00 0.00 0.00 3.16
2467 3273 1.045911 GTTGACAGGGGCCCACAAAA 61.046 55.000 27.72 11.09 0.00 2.44
2478 3284 4.115516 CAGGTCATTCGATAGTTGACAGG 58.884 47.826 15.62 7.08 45.46 4.00
2712 3519 4.910195 ACATCAGCTAATTCTGGAACACA 58.090 39.130 0.00 0.00 34.91 3.72
2759 3566 7.771927 AGGCAGTTAAAGTTGTAGTACTCTA 57.228 36.000 0.00 0.00 0.00 2.43
2765 3572 5.008712 GCAAGAAGGCAGTTAAAGTTGTAGT 59.991 40.000 0.00 0.00 0.00 2.73
2817 3625 2.224066 GGAGATGCACGCTGTAGGTAAT 60.224 50.000 0.00 0.00 0.00 1.89
2883 3693 3.803186 AGCAGCATATGGCCTAAAGAT 57.197 42.857 3.32 0.00 46.50 2.40
2937 3747 6.159293 TGTCATTTTTGCAAAAGTGTGTGTA 58.841 32.000 33.17 19.19 37.06 2.90
2938 3748 4.993584 TGTCATTTTTGCAAAAGTGTGTGT 59.006 33.333 33.17 12.33 37.06 3.72
2939 3749 5.527511 TGTCATTTTTGCAAAAGTGTGTG 57.472 34.783 33.17 22.59 37.06 3.82
3025 3835 5.461032 AATAATGCCGGACTTGACAAAAA 57.539 34.783 5.05 0.00 0.00 1.94
3037 3847 4.816385 ACATCAAGTGACTAATAATGCCGG 59.184 41.667 0.00 0.00 0.00 6.13
3632 4471 8.915057 ACCATCAATAGAGAGATAACAAATGG 57.085 34.615 0.00 0.00 35.89 3.16
3643 4482 7.838696 ACATATCCCTCTACCATCAATAGAGAG 59.161 40.741 10.02 0.00 45.86 3.20
3650 4489 5.546499 GGGTAACATATCCCTCTACCATCAA 59.454 44.000 0.00 0.00 40.48 2.57
3685 4524 3.181476 GGACACCAGCATTTGTTTTGACT 60.181 43.478 0.00 0.00 0.00 3.41
3756 4595 6.840527 TGCAGAATTATCCATCCACTGATAA 58.159 36.000 0.00 0.00 37.72 1.75
3862 4729 2.237143 AGCAACCAGAAGCTACAGCATA 59.763 45.455 3.70 0.00 45.16 3.14
3872 4739 1.135859 GCACGAATCAGCAACCAGAAG 60.136 52.381 0.00 0.00 0.00 2.85
3887 4754 2.536365 GATAATTGGAGTGTCGCACGA 58.464 47.619 0.00 0.00 39.64 4.35
3901 4768 3.202818 TGGTGCATCAGTGGAGGATAATT 59.797 43.478 0.00 0.00 0.00 1.40
3988 4857 5.982356 TCATATTCTGGTGAGAGGACAAAG 58.018 41.667 0.00 0.00 0.00 2.77
4081 4951 1.445238 GCAAGTCTCGCTTCGCTCT 60.445 57.895 0.00 0.00 34.69 4.09
4152 5022 3.838795 GACATGCGTCGACGGCAC 61.839 66.667 36.13 21.63 40.23 5.01
4182 5052 2.466867 CCATACAGGGCACGACAAC 58.533 57.895 0.00 0.00 0.00 3.32
4191 5061 4.623932 ACATACATACAGCCATACAGGG 57.376 45.455 0.00 0.00 38.09 4.45
4299 5181 7.122799 TGTCCTCTTATATTCATACTGATCGGG 59.877 40.741 6.47 0.00 0.00 5.14
4307 5189 7.657761 CCACAGGTTGTCCTCTTATATTCATAC 59.342 40.741 0.00 0.00 43.07 2.39
4346 5228 9.509855 GCCAATAACAAATCGTCACAAATATAA 57.490 29.630 0.00 0.00 0.00 0.98
4389 5271 6.015918 ACAGAATTATCACAAATTGGGGACA 58.984 36.000 0.00 0.00 39.83 4.02
4458 5340 3.319137 ACATAGCACGAGAAGCTTTCA 57.681 42.857 0.00 0.00 43.25 2.69
4534 5416 1.813178 CACACACGAGCTCCTAGAGAA 59.187 52.381 8.47 0.00 0.00 2.87
4558 5440 3.286353 ACTAGTACTAAACCTCCTCGGC 58.714 50.000 3.76 0.00 35.61 5.54
4629 5513 3.243907 GCACCTCCACCAGATCATACTAC 60.244 52.174 0.00 0.00 0.00 2.73
4882 5773 3.123621 GCTCGACGAATCACAGAAAACAT 59.876 43.478 0.00 0.00 0.00 2.71
5003 5895 2.744202 CACCAAACGGGAGAAGATTCAG 59.256 50.000 0.00 0.00 41.15 3.02
5016 5908 0.670546 ACAGCTCGGATCACCAAACG 60.671 55.000 0.00 0.00 35.59 3.60
5082 5996 0.941542 GGATAAAACTATGCGCCGCA 59.058 50.000 16.69 16.69 44.86 5.69
5190 6104 9.109393 ACACGCAACAATAACTATGATAAATCT 57.891 29.630 0.00 0.00 0.00 2.40
5251 6165 2.280797 GTGGCTCCGCTGTCACAA 60.281 61.111 5.88 0.00 0.00 3.33
5262 6176 4.569943 TGATTAAGTCTCAAGTGTGGCTC 58.430 43.478 0.00 0.00 0.00 4.70
5280 6194 5.250200 TCATAGTACCAAAACCGCTTGATT 58.750 37.500 0.00 0.00 0.00 2.57
5298 6212 0.029834 GCAGCGCCACCATTTCATAG 59.970 55.000 2.29 0.00 0.00 2.23
5299 6213 0.394216 AGCAGCGCCACCATTTCATA 60.394 50.000 2.29 0.00 0.00 2.15
5301 6215 2.282391 AGCAGCGCCACCATTTCA 60.282 55.556 2.29 0.00 0.00 2.69
5302 6216 1.986575 GAGAGCAGCGCCACCATTTC 61.987 60.000 2.29 0.00 0.00 2.17
5303 6217 2.034687 AGAGCAGCGCCACCATTT 59.965 55.556 2.29 0.00 0.00 2.32
5304 6218 2.437359 GAGAGCAGCGCCACCATT 60.437 61.111 2.29 0.00 0.00 3.16
5305 6219 2.964310 AAGAGAGCAGCGCCACCAT 61.964 57.895 2.29 0.00 0.00 3.55
5307 6221 3.123620 CAAGAGAGCAGCGCCACC 61.124 66.667 2.29 0.00 0.00 4.61
5308 6222 2.358003 ACAAGAGAGCAGCGCCAC 60.358 61.111 2.29 0.00 0.00 5.01
5309 6223 2.357881 CACAAGAGAGCAGCGCCA 60.358 61.111 2.29 0.00 0.00 5.69
5310 6224 3.797546 GCACAAGAGAGCAGCGCC 61.798 66.667 2.29 0.00 0.00 6.53
5435 6350 9.400638 CGTTCTAAAATTGCCTTAAAACATACA 57.599 29.630 0.00 0.00 0.00 2.29
5442 6357 5.833082 TGTGCGTTCTAAAATTGCCTTAAA 58.167 33.333 0.00 0.00 0.00 1.52
5448 6363 4.737765 TGAAGTTGTGCGTTCTAAAATTGC 59.262 37.500 0.00 0.00 0.00 3.56
5471 6386 3.801698 TCAGCCTTACGACTATACGACT 58.198 45.455 0.00 0.00 37.03 4.18
5478 6393 2.803030 AGACCTCAGCCTTACGACTA 57.197 50.000 0.00 0.00 0.00 2.59
5488 6403 4.622701 AAATTATCGCAAAGACCTCAGC 57.377 40.909 0.00 0.00 0.00 4.26
5492 6407 5.416947 ACGACTAAATTATCGCAAAGACCT 58.583 37.500 6.60 0.00 42.12 3.85
5496 6411 6.682863 CCTCAAACGACTAAATTATCGCAAAG 59.317 38.462 6.60 1.54 42.12 2.77
5500 6415 5.713822 ACCTCAAACGACTAAATTATCGC 57.286 39.130 6.60 0.00 42.12 4.58
5513 6428 7.752239 TCTTAAGACGTAAGAATACCTCAAACG 59.248 37.037 8.21 0.00 44.29 3.60
5580 6496 8.703604 TCTATCACCGAAATTTCTAGAAAGTG 57.296 34.615 21.75 21.01 33.32 3.16
5586 6503 8.718102 TCCTTTTCTATCACCGAAATTTCTAG 57.282 34.615 15.92 10.11 31.17 2.43
5588 6505 7.996098 TTCCTTTTCTATCACCGAAATTTCT 57.004 32.000 15.92 0.00 31.17 2.52
5595 6512 5.429681 TCCAATTCCTTTTCTATCACCGA 57.570 39.130 0.00 0.00 0.00 4.69
5636 6553 9.706691 ATTTGAGATTTTCTTACGTCTAAGTCA 57.293 29.630 0.00 0.00 32.45 3.41
5664 6585 6.597672 TCACATAAGTGCTTCCAATCGTAAAT 59.402 34.615 0.00 0.00 45.49 1.40
5666 6587 5.483811 TCACATAAGTGCTTCCAATCGTAA 58.516 37.500 0.00 0.00 45.49 3.18
5667 6588 5.079689 TCACATAAGTGCTTCCAATCGTA 57.920 39.130 0.00 0.00 45.49 3.43
5668 6589 3.937814 TCACATAAGTGCTTCCAATCGT 58.062 40.909 0.00 0.00 45.49 3.73
5669 6590 4.944962 TTCACATAAGTGCTTCCAATCG 57.055 40.909 0.00 0.00 45.49 3.34
5670 6591 7.814107 TCAATTTTCACATAAGTGCTTCCAATC 59.186 33.333 0.00 0.00 45.49 2.67
5671 6592 7.669427 TCAATTTTCACATAAGTGCTTCCAAT 58.331 30.769 0.00 0.00 45.49 3.16
5672 6593 7.048629 TCAATTTTCACATAAGTGCTTCCAA 57.951 32.000 0.00 0.00 45.49 3.53
5673 6594 6.647334 TCAATTTTCACATAAGTGCTTCCA 57.353 33.333 0.00 0.00 45.49 3.53
5674 6595 7.945033 TTTCAATTTTCACATAAGTGCTTCC 57.055 32.000 0.00 0.00 45.49 3.46
5675 6596 9.195411 TGATTTCAATTTTCACATAAGTGCTTC 57.805 29.630 0.00 0.00 45.49 3.86
5676 6597 9.715121 ATGATTTCAATTTTCACATAAGTGCTT 57.285 25.926 0.00 0.00 45.49 3.91
5677 6598 9.146984 CATGATTTCAATTTTCACATAAGTGCT 57.853 29.630 0.00 0.00 45.49 4.40
5678 6599 8.928733 ACATGATTTCAATTTTCACATAAGTGC 58.071 29.630 0.00 0.00 45.49 4.40
5680 6601 9.985730 ACACATGATTTCAATTTTCACATAAGT 57.014 25.926 0.00 0.00 0.00 2.24
5682 6603 9.421806 GGACACATGATTTCAATTTTCACATAA 57.578 29.630 0.00 0.00 0.00 1.90
5683 6604 8.583296 TGGACACATGATTTCAATTTTCACATA 58.417 29.630 0.00 0.00 0.00 2.29
5684 6605 7.443477 TGGACACATGATTTCAATTTTCACAT 58.557 30.769 0.00 0.00 0.00 3.21
5685 6606 6.814043 TGGACACATGATTTCAATTTTCACA 58.186 32.000 0.00 0.00 0.00 3.58
5686 6607 7.712264 TTGGACACATGATTTCAATTTTCAC 57.288 32.000 0.00 0.00 0.00 3.18
5687 6608 7.328982 CGATTGGACACATGATTTCAATTTTCA 59.671 33.333 0.00 0.00 0.00 2.69
5688 6609 7.541783 TCGATTGGACACATGATTTCAATTTTC 59.458 33.333 0.00 0.00 0.00 2.29
5689 6610 7.377398 TCGATTGGACACATGATTTCAATTTT 58.623 30.769 0.00 0.00 0.00 1.82
5690 6611 6.923012 TCGATTGGACACATGATTTCAATTT 58.077 32.000 0.00 0.00 0.00 1.82
5693 6614 5.647225 TGATCGATTGGACACATGATTTCAA 59.353 36.000 0.00 0.00 0.00 2.69
5695 6616 5.525012 TCTGATCGATTGGACACATGATTTC 59.475 40.000 0.00 0.00 0.00 2.17
5704 6625 2.466846 TCCCTTCTGATCGATTGGACA 58.533 47.619 0.00 0.00 0.00 4.02
5710 6631 1.770658 TGCCATTCCCTTCTGATCGAT 59.229 47.619 0.00 0.00 0.00 3.59
5717 6638 0.034670 GCTCAGTGCCATTCCCTTCT 60.035 55.000 0.00 0.00 35.15 2.85
5730 6651 2.735134 GTTTTCGATACAACGGCTCAGT 59.265 45.455 0.00 0.00 0.00 3.41
5731 6652 3.369835 GTTTTCGATACAACGGCTCAG 57.630 47.619 0.00 0.00 0.00 3.35
5745 6666 2.230864 GCTCGGATTTGTTCGTTTTCG 58.769 47.619 0.00 0.00 45.64 3.46
5746 6667 3.262135 TGCTCGGATTTGTTCGTTTTC 57.738 42.857 0.00 0.00 0.00 2.29
5766 6687 8.143193 TGATGAAACAGCTTGAATATGTTTGTT 58.857 29.630 11.17 1.50 44.76 2.83
5767 6688 7.660112 TGATGAAACAGCTTGAATATGTTTGT 58.340 30.769 11.17 2.68 44.76 2.83
5768 6689 8.523523 TTGATGAAACAGCTTGAATATGTTTG 57.476 30.769 11.17 0.00 44.76 2.93
5769 6690 9.545105 TTTTGATGAAACAGCTTGAATATGTTT 57.455 25.926 7.38 7.38 46.75 2.83
5770 6691 9.545105 TTTTTGATGAAACAGCTTGAATATGTT 57.455 25.926 0.00 0.00 38.76 2.71
5771 6692 8.981647 GTTTTTGATGAAACAGCTTGAATATGT 58.018 29.630 0.00 0.00 38.92 2.29
5772 6693 8.157813 CGTTTTTGATGAAACAGCTTGAATATG 58.842 33.333 0.00 0.00 39.01 1.78
5773 6694 8.081633 TCGTTTTTGATGAAACAGCTTGAATAT 58.918 29.630 0.00 0.00 39.01 1.28
5774 6695 7.421599 TCGTTTTTGATGAAACAGCTTGAATA 58.578 30.769 0.00 0.00 39.01 1.75
5776 6697 5.645624 TCGTTTTTGATGAAACAGCTTGAA 58.354 33.333 0.00 0.00 39.01 2.69
5777 6698 5.242069 TCGTTTTTGATGAAACAGCTTGA 57.758 34.783 0.00 0.00 39.01 3.02
5778 6699 5.552472 CGTTCGTTTTTGATGAAACAGCTTG 60.552 40.000 0.00 0.00 39.01 4.01
5780 6701 4.035017 CGTTCGTTTTTGATGAAACAGCT 58.965 39.130 0.00 0.00 39.01 4.24
5782 6703 4.204168 CACCGTTCGTTTTTGATGAAACAG 59.796 41.667 0.00 0.00 39.01 3.16
5783 6704 4.099120 CACCGTTCGTTTTTGATGAAACA 58.901 39.130 0.00 0.00 39.01 2.83
5784 6705 4.344448 TCACCGTTCGTTTTTGATGAAAC 58.656 39.130 0.00 0.00 35.14 2.78
5785 6706 4.496673 CCTCACCGTTCGTTTTTGATGAAA 60.497 41.667 0.00 0.00 35.14 2.69
5786 6707 3.002862 CCTCACCGTTCGTTTTTGATGAA 59.997 43.478 0.00 0.00 0.00 2.57
5787 6708 2.546368 CCTCACCGTTCGTTTTTGATGA 59.454 45.455 0.00 0.00 0.00 2.92
5788 6709 2.289547 ACCTCACCGTTCGTTTTTGATG 59.710 45.455 0.00 0.00 0.00 3.07
5821 6754 0.118144 AGAGAGAAAGGGCAGGAGGT 59.882 55.000 0.00 0.00 0.00 3.85
5823 6756 1.864669 AGAGAGAGAAAGGGCAGGAG 58.135 55.000 0.00 0.00 0.00 3.69
5828 6761 3.133141 ACACAAAGAGAGAGAAAGGGC 57.867 47.619 0.00 0.00 0.00 5.19
5834 6767 6.183360 GCCAGACATATACACAAAGAGAGAGA 60.183 42.308 0.00 0.00 0.00 3.10
5835 6768 5.982516 GCCAGACATATACACAAAGAGAGAG 59.017 44.000 0.00 0.00 0.00 3.20
5836 6769 5.163405 GGCCAGACATATACACAAAGAGAGA 60.163 44.000 0.00 0.00 0.00 3.10
5837 6770 5.053145 GGCCAGACATATACACAAAGAGAG 58.947 45.833 0.00 0.00 0.00 3.20
5838 6771 4.716784 AGGCCAGACATATACACAAAGAGA 59.283 41.667 5.01 0.00 0.00 3.10
5839 6772 4.813161 CAGGCCAGACATATACACAAAGAG 59.187 45.833 5.01 0.00 0.00 2.85
5840 6773 4.469586 TCAGGCCAGACATATACACAAAGA 59.530 41.667 5.01 0.00 0.00 2.52
5841 6774 4.769688 TCAGGCCAGACATATACACAAAG 58.230 43.478 5.01 0.00 0.00 2.77
5842 6775 4.835284 TCAGGCCAGACATATACACAAA 57.165 40.909 5.01 0.00 0.00 2.83
5843 6776 5.125356 CAATCAGGCCAGACATATACACAA 58.875 41.667 5.01 0.00 0.00 3.33
5844 6777 4.707105 CAATCAGGCCAGACATATACACA 58.293 43.478 5.01 0.00 0.00 3.72
5845 6778 3.499918 GCAATCAGGCCAGACATATACAC 59.500 47.826 5.01 0.00 0.00 2.90
5846 6779 3.743521 GCAATCAGGCCAGACATATACA 58.256 45.455 5.01 0.00 0.00 2.29
5847 6780 2.738846 CGCAATCAGGCCAGACATATAC 59.261 50.000 5.01 0.00 0.00 1.47
5848 6781 2.871637 GCGCAATCAGGCCAGACATATA 60.872 50.000 5.01 0.00 0.00 0.86
5849 6782 1.888215 CGCAATCAGGCCAGACATAT 58.112 50.000 5.01 0.00 0.00 1.78
5850 6783 0.815213 GCGCAATCAGGCCAGACATA 60.815 55.000 5.01 0.00 0.00 2.29
5851 6784 2.117156 GCGCAATCAGGCCAGACAT 61.117 57.895 5.01 0.00 0.00 3.06
5852 6785 2.747460 GCGCAATCAGGCCAGACA 60.747 61.111 5.01 0.00 0.00 3.41
5867 6800 1.199852 GGAAATAATGCGTTGCGGCG 61.200 55.000 0.51 0.51 35.06 6.46
5868 6801 0.869880 GGGAAATAATGCGTTGCGGC 60.870 55.000 0.08 0.00 0.00 6.53
5869 6802 0.738389 AGGGAAATAATGCGTTGCGG 59.262 50.000 0.08 0.00 0.00 5.69
5870 6803 1.400142 TGAGGGAAATAATGCGTTGCG 59.600 47.619 0.08 0.00 0.00 4.85
5871 6804 2.423538 AGTGAGGGAAATAATGCGTTGC 59.576 45.455 0.08 0.00 0.00 4.17
5872 6805 3.065371 GGAGTGAGGGAAATAATGCGTTG 59.935 47.826 0.08 0.00 0.00 4.10
5873 6806 3.279434 GGAGTGAGGGAAATAATGCGTT 58.721 45.455 0.00 0.00 0.00 4.84
5874 6807 2.421529 GGGAGTGAGGGAAATAATGCGT 60.422 50.000 0.00 0.00 0.00 5.24
5875 6808 2.158755 AGGGAGTGAGGGAAATAATGCG 60.159 50.000 0.00 0.00 0.00 4.73
5876 6809 3.117888 TGAGGGAGTGAGGGAAATAATGC 60.118 47.826 0.00 0.00 0.00 3.56
5877 6810 4.778213 TGAGGGAGTGAGGGAAATAATG 57.222 45.455 0.00 0.00 0.00 1.90
5878 6811 4.790790 AGTTGAGGGAGTGAGGGAAATAAT 59.209 41.667 0.00 0.00 0.00 1.28
5879 6812 4.019321 CAGTTGAGGGAGTGAGGGAAATAA 60.019 45.833 0.00 0.00 0.00 1.40
5880 6813 3.519510 CAGTTGAGGGAGTGAGGGAAATA 59.480 47.826 0.00 0.00 0.00 1.40
5881 6814 2.307098 CAGTTGAGGGAGTGAGGGAAAT 59.693 50.000 0.00 0.00 0.00 2.17
5882 6815 1.699634 CAGTTGAGGGAGTGAGGGAAA 59.300 52.381 0.00 0.00 0.00 3.13
5883 6816 1.132849 TCAGTTGAGGGAGTGAGGGAA 60.133 52.381 0.00 0.00 0.00 3.97
5884 6817 0.487325 TCAGTTGAGGGAGTGAGGGA 59.513 55.000 0.00 0.00 0.00 4.20
5885 6818 0.901124 CTCAGTTGAGGGAGTGAGGG 59.099 60.000 1.09 0.00 41.38 4.30
5906 6839 5.774498 ACTAAGCTCGATGTCATACATGA 57.226 39.130 0.00 0.00 39.27 3.07
5907 6840 5.570973 GCTACTAAGCTCGATGTCATACATG 59.429 44.000 0.00 0.00 45.85 3.21
5908 6841 5.704888 GCTACTAAGCTCGATGTCATACAT 58.295 41.667 0.00 0.00 45.85 2.29
5909 6842 5.109662 GCTACTAAGCTCGATGTCATACA 57.890 43.478 0.00 0.00 45.85 2.29
5923 6856 9.158233 ACTCGAATTAGATAGCTAGCTACTAAG 57.842 37.037 29.54 23.50 31.98 2.18
5924 6857 8.937884 CACTCGAATTAGATAGCTAGCTACTAA 58.062 37.037 28.94 28.94 32.46 2.24
5925 6858 7.549842 CCACTCGAATTAGATAGCTAGCTACTA 59.450 40.741 26.41 22.90 0.00 1.82
5926 6859 6.373216 CCACTCGAATTAGATAGCTAGCTACT 59.627 42.308 26.41 23.80 0.00 2.57
5927 6860 6.548171 CCACTCGAATTAGATAGCTAGCTAC 58.452 44.000 26.41 18.77 0.00 3.58
5928 6861 5.124138 GCCACTCGAATTAGATAGCTAGCTA 59.876 44.000 26.09 26.09 0.00 3.32
5929 6862 4.082463 GCCACTCGAATTAGATAGCTAGCT 60.082 45.833 23.12 23.12 0.00 3.32
5930 6863 4.170256 GCCACTCGAATTAGATAGCTAGC 58.830 47.826 6.62 6.62 0.00 3.42
5931 6864 5.378292 TGCCACTCGAATTAGATAGCTAG 57.622 43.478 0.00 0.00 0.00 3.42
5932 6865 5.784578 TTGCCACTCGAATTAGATAGCTA 57.215 39.130 0.00 0.00 0.00 3.32
5933 6866 4.672587 TTGCCACTCGAATTAGATAGCT 57.327 40.909 0.00 0.00 0.00 3.32
5934 6867 4.153117 CCATTGCCACTCGAATTAGATAGC 59.847 45.833 0.00 0.00 0.00 2.97
5935 6868 5.541845 TCCATTGCCACTCGAATTAGATAG 58.458 41.667 0.00 0.00 0.00 2.08
5936 6869 5.545063 TCCATTGCCACTCGAATTAGATA 57.455 39.130 0.00 0.00 0.00 1.98
5937 6870 4.422073 TCCATTGCCACTCGAATTAGAT 57.578 40.909 0.00 0.00 0.00 1.98
5938 6871 3.904800 TCCATTGCCACTCGAATTAGA 57.095 42.857 0.00 0.00 0.00 2.10
5939 6872 4.201950 CCTTTCCATTGCCACTCGAATTAG 60.202 45.833 0.00 0.00 0.00 1.73
5940 6873 3.694072 CCTTTCCATTGCCACTCGAATTA 59.306 43.478 0.00 0.00 0.00 1.40
5941 6874 2.493278 CCTTTCCATTGCCACTCGAATT 59.507 45.455 0.00 0.00 0.00 2.17
5942 6875 2.094675 CCTTTCCATTGCCACTCGAAT 58.905 47.619 0.00 0.00 0.00 3.34
5943 6876 1.533625 CCTTTCCATTGCCACTCGAA 58.466 50.000 0.00 0.00 0.00 3.71
5944 6877 0.322456 CCCTTTCCATTGCCACTCGA 60.322 55.000 0.00 0.00 0.00 4.04
5945 6878 0.322456 TCCCTTTCCATTGCCACTCG 60.322 55.000 0.00 0.00 0.00 4.18
5946 6879 1.923356 TTCCCTTTCCATTGCCACTC 58.077 50.000 0.00 0.00 0.00 3.51
5947 6880 2.397044 TTTCCCTTTCCATTGCCACT 57.603 45.000 0.00 0.00 0.00 4.00
5948 6881 3.337358 CATTTTCCCTTTCCATTGCCAC 58.663 45.455 0.00 0.00 0.00 5.01
5949 6882 2.290197 GCATTTTCCCTTTCCATTGCCA 60.290 45.455 0.00 0.00 0.00 4.92
5950 6883 2.358957 GCATTTTCCCTTTCCATTGCC 58.641 47.619 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.