Multiple sequence alignment - TraesCS6A01G398000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G398000 chr6A 100.000 2983 0 0 3304 6286 609034901 609031919 0.000000e+00 5509.0
1 TraesCS6A01G398000 chr6A 100.000 2399 0 0 485 2883 609037720 609035322 0.000000e+00 4431.0
2 TraesCS6A01G398000 chr6A 100.000 184 0 0 1 184 609038204 609038021 2.170000e-89 340.0
3 TraesCS6A01G398000 chr6D 91.180 2721 157 36 3304 5988 462200546 462197873 0.000000e+00 3618.0
4 TraesCS6A01G398000 chr6D 95.528 2102 69 8 793 2879 462203021 462200930 0.000000e+00 3338.0
5 TraesCS6A01G398000 chr6D 90.604 298 28 0 5989 6286 462197803 462197506 4.570000e-106 396.0
6 TraesCS6A01G398000 chr6D 86.455 347 33 7 4542 4882 462192357 462192019 9.960000e-98 368.0
7 TraesCS6A01G398000 chr6D 77.778 549 89 23 5047 5570 462183666 462183126 2.200000e-79 307.0
8 TraesCS6A01G398000 chr6B 93.323 2007 101 18 882 2879 704454321 704452339 0.000000e+00 2933.0
9 TraesCS6A01G398000 chr6B 88.910 1569 113 28 4436 5988 704451651 704450128 0.000000e+00 1877.0
10 TraesCS6A01G398000 chr6B 86.368 1071 79 26 4464 5508 702927854 702926825 0.000000e+00 1107.0
11 TraesCS6A01G398000 chr6B 86.251 851 55 24 4464 5283 702980535 702979716 0.000000e+00 867.0
12 TraesCS6A01G398000 chr6B 84.211 665 43 27 4464 5089 702908861 702908220 1.950000e-164 590.0
13 TraesCS6A01G398000 chr6B 90.159 315 23 5 3527 3836 704452297 704451986 2.730000e-108 403.0
14 TraesCS6A01G398000 chr6B 89.024 328 24 3 5083 5406 702901978 702901659 4.570000e-106 396.0
15 TraesCS6A01G398000 chr6B 85.667 300 28 4 5987 6286 704445574 704445290 1.020000e-77 302.0
16 TraesCS6A01G398000 chr6B 85.185 297 28 5 5990 6286 704449965 704449685 2.220000e-74 291.0
17 TraesCS6A01G398000 chr6B 92.593 162 9 2 4039 4199 704451990 704451831 4.900000e-56 230.0
18 TraesCS6A01G398000 chr6B 92.913 127 6 1 5864 5987 704445849 704445723 1.390000e-41 182.0
19 TraesCS6A01G398000 chr6B 91.200 125 9 2 4249 4373 704451807 704451685 1.080000e-37 169.0
20 TraesCS6A01G398000 chr6B 86.719 128 10 2 5562 5682 703146021 703145894 1.100000e-27 135.0
21 TraesCS6A01G398000 chr6B 100.000 30 0 0 5959 5988 703047209 703047180 8.800000e-04 56.5
22 TraesCS6A01G398000 chr5D 80.119 337 38 12 485 792 562009954 562010290 2.280000e-54 224.0
23 TraesCS6A01G398000 chr5D 90.625 160 15 0 3873 4032 510619705 510619864 4.940000e-51 213.0
24 TraesCS6A01G398000 chr5D 88.571 175 16 4 3866 4037 37159677 37159850 6.390000e-50 209.0
25 TraesCS6A01G398000 chr5D 91.096 146 13 0 3873 4018 388831845 388831990 1.380000e-46 198.0
26 TraesCS6A01G398000 chr5D 89.474 133 9 5 1 131 381560592 381560721 5.040000e-36 163.0
27 TraesCS6A01G398000 chr5B 92.466 146 10 1 3873 4018 467228555 467228699 2.300000e-49 207.0
28 TraesCS6A01G398000 chr7D 89.744 156 16 0 3877 4032 575360595 575360440 3.840000e-47 200.0
29 TraesCS6A01G398000 chr7D 86.111 180 20 3 609 788 25328948 25328774 8.320000e-44 189.0
30 TraesCS6A01G398000 chr7D 84.574 188 24 4 609 793 69243887 69243702 1.390000e-41 182.0
31 TraesCS6A01G398000 chr7D 84.211 190 27 1 609 795 625300803 625300614 1.390000e-41 182.0
32 TraesCS6A01G398000 chr7D 90.083 121 8 4 1 120 195282243 195282360 3.030000e-33 154.0
33 TraesCS6A01G398000 chr1D 86.413 184 23 1 609 792 249746454 249746635 3.840000e-47 200.0
34 TraesCS6A01G398000 chr1D 87.574 169 17 3 3873 4037 18997693 18997861 6.430000e-45 193.0
35 TraesCS6A01G398000 chr1D 84.574 188 26 2 609 793 217293659 217293846 3.870000e-42 183.0
36 TraesCS6A01G398000 chr1D 89.431 123 9 4 3 124 199563757 199563876 1.090000e-32 152.0
37 TraesCS6A01G398000 chr1D 89.474 114 12 0 3922 4035 339966707 339966594 1.830000e-30 145.0
38 TraesCS6A01G398000 chr2D 86.413 184 22 2 609 792 61007745 61007925 1.380000e-46 198.0
39 TraesCS6A01G398000 chr2D 83.065 124 15 3 67 184 131315858 131315981 2.400000e-19 108.0
40 TraesCS6A01G398000 chr7A 84.817 191 24 5 609 798 257124125 257124311 2.990000e-43 187.0
41 TraesCS6A01G398000 chr2B 85.027 187 23 2 1 184 143477389 143477573 1.080000e-42 185.0
42 TraesCS6A01G398000 chr1B 84.865 185 24 3 609 793 688401894 688401714 3.870000e-42 183.0
43 TraesCS6A01G398000 chr1B 79.679 187 32 5 1 184 556098209 556098026 5.110000e-26 130.0
44 TraesCS6A01G398000 chr2A 84.783 184 25 2 3 184 516300612 516300794 1.390000e-41 182.0
45 TraesCS6A01G398000 chr5A 88.550 131 13 2 1 129 644171914 644172044 2.350000e-34 158.0
46 TraesCS6A01G398000 chr3D 92.593 108 8 0 1 108 535399231 535399338 8.440000e-34 156.0
47 TraesCS6A01G398000 chr3D 79.459 185 30 7 3 184 112965442 112965621 2.380000e-24 124.0
48 TraesCS6A01G398000 chr4A 81.301 123 7 9 3873 3992 737429997 737430106 1.120000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G398000 chr6A 609031919 609038204 6285 True 3426.666667 5509 100.000000 1 6286 3 chr6A.!!$R1 6285
1 TraesCS6A01G398000 chr6D 462197506 462203021 5515 True 2450.666667 3618 92.437333 793 6286 3 chr6D.!!$R3 5493
2 TraesCS6A01G398000 chr6D 462183126 462183666 540 True 307.000000 307 77.778000 5047 5570 1 chr6D.!!$R1 523
3 TraesCS6A01G398000 chr6B 702926825 702927854 1029 True 1107.000000 1107 86.368000 4464 5508 1 chr6B.!!$R3 1044
4 TraesCS6A01G398000 chr6B 702979716 702980535 819 True 867.000000 867 86.251000 4464 5283 1 chr6B.!!$R4 819
5 TraesCS6A01G398000 chr6B 704445290 704454321 9031 True 798.375000 2933 89.993750 882 6286 8 chr6B.!!$R7 5404
6 TraesCS6A01G398000 chr6B 702908220 702908861 641 True 590.000000 590 84.211000 4464 5089 1 chr6B.!!$R2 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.039074 ACTGTGACTCTCGCGAAAGG 60.039 55.0 14.96 7.68 0.00 3.11 F
125 126 0.042448 GCGAGACAGAAAACGCGTTT 60.042 50.0 30.36 30.36 41.49 3.60 F
666 667 0.092351 AATAGTCGAAAACGCGTGCG 59.908 50.0 14.98 17.73 46.03 5.34 F
745 746 0.110823 GAACGTGCCAAGTAACGCTG 60.111 55.0 0.00 0.00 43.49 5.18 F
2034 2044 0.039618 TGGGGAAGTTTGATGAGGCC 59.960 55.0 0.00 0.00 0.00 5.19 F
2044 2054 0.183492 TGATGAGGCCATAAGGGTGC 59.817 55.0 5.01 0.00 39.65 5.01 F
2689 2699 0.817634 TGGGCGTTCACTCAAACAGG 60.818 55.0 0.00 0.00 0.00 4.00 F
3932 3978 0.400213 TGGCAGACCCAAGTTCGAAT 59.600 50.0 0.00 0.00 41.82 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 1993 0.882484 TGTTTGCCGCGTCAATCTCA 60.882 50.000 2.36 1.13 0.00 3.27 R
2010 2020 1.004161 TCATCAAACTTCCCCATCGCA 59.996 47.619 0.00 0.00 0.00 5.10 R
2014 2024 1.342374 GGCCTCATCAAACTTCCCCAT 60.342 52.381 0.00 0.00 0.00 4.00 R
2046 2056 1.348036 ACCTTCTTAGCGACAGCCTTT 59.652 47.619 0.00 0.00 46.67 3.11 R
3419 3439 0.179169 GAGTCGTCCTCGGTTGTAGC 60.179 60.000 0.00 0.00 37.69 3.58 R
3460 3480 0.315251 GGCACCTTTGGAAGAAGTGC 59.685 55.000 4.90 4.90 35.17 4.40 R
4226 4272 0.512952 GCTACAAGTTGGTGCACTCG 59.487 55.000 17.98 1.71 0.00 4.18 R
5374 5522 1.381327 AGGCTACCTCCTGCGCTAA 60.381 57.895 9.73 0.00 34.56 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.887339 GGAAGCAAAACTGTGACTCTC 57.113 47.619 0.00 0.00 0.00 3.20
21 22 2.221981 GGAAGCAAAACTGTGACTCTCG 59.778 50.000 0.00 0.00 0.00 4.04
22 23 1.221414 AGCAAAACTGTGACTCTCGC 58.779 50.000 0.00 0.00 0.00 5.03
23 24 0.111089 GCAAAACTGTGACTCTCGCG 60.111 55.000 0.00 0.00 0.00 5.87
24 25 1.487482 CAAAACTGTGACTCTCGCGA 58.513 50.000 9.26 9.26 0.00 5.87
25 26 1.858458 CAAAACTGTGACTCTCGCGAA 59.142 47.619 11.33 0.02 0.00 4.70
26 27 2.218953 AAACTGTGACTCTCGCGAAA 57.781 45.000 11.33 0.00 0.00 3.46
27 28 1.772182 AACTGTGACTCTCGCGAAAG 58.228 50.000 11.33 9.68 0.00 2.62
28 29 0.039074 ACTGTGACTCTCGCGAAAGG 60.039 55.000 14.96 7.68 0.00 3.11
29 30 0.241213 CTGTGACTCTCGCGAAAGGA 59.759 55.000 14.96 5.33 0.00 3.36
30 31 0.671796 TGTGACTCTCGCGAAAGGAA 59.328 50.000 14.96 0.00 0.00 3.36
31 32 1.067974 TGTGACTCTCGCGAAAGGAAA 59.932 47.619 14.96 0.00 0.00 3.13
32 33 2.132762 GTGACTCTCGCGAAAGGAAAA 58.867 47.619 14.96 0.00 0.00 2.29
33 34 2.542595 GTGACTCTCGCGAAAGGAAAAA 59.457 45.455 14.96 0.00 0.00 1.94
72 73 2.861006 GTTTTCGAGAGGCACGGC 59.139 61.111 0.00 0.00 0.00 5.68
85 86 3.812019 ACGGCCGTGACTCTAGCG 61.812 66.667 33.75 0.00 0.00 4.26
102 103 3.509388 CGGAAGCTAAACCGTGACT 57.491 52.632 15.59 0.00 43.53 3.41
103 104 1.347320 CGGAAGCTAAACCGTGACTC 58.653 55.000 15.59 0.00 43.53 3.36
104 105 1.067776 CGGAAGCTAAACCGTGACTCT 60.068 52.381 15.59 0.00 43.53 3.24
105 106 2.608268 GGAAGCTAAACCGTGACTCTC 58.392 52.381 0.00 0.00 0.00 3.20
106 107 2.251893 GAAGCTAAACCGTGACTCTCG 58.748 52.381 0.00 0.00 0.00 4.04
107 108 0.109226 AGCTAAACCGTGACTCTCGC 60.109 55.000 0.00 0.00 0.00 5.03
114 115 4.755546 GTGACTCTCGCGAGACAG 57.244 61.111 33.84 26.37 41.36 3.51
115 116 2.163603 GTGACTCTCGCGAGACAGA 58.836 57.895 33.84 17.26 41.36 3.41
116 117 0.517755 GTGACTCTCGCGAGACAGAA 59.482 55.000 33.84 17.00 41.36 3.02
117 118 1.069159 GTGACTCTCGCGAGACAGAAA 60.069 52.381 33.84 13.66 41.36 2.52
118 119 1.607148 TGACTCTCGCGAGACAGAAAA 59.393 47.619 33.84 12.89 39.74 2.29
119 120 1.980156 GACTCTCGCGAGACAGAAAAC 59.020 52.381 33.84 15.48 39.74 2.43
120 121 0.978385 CTCTCGCGAGACAGAAAACG 59.022 55.000 33.84 18.03 39.74 3.60
121 122 1.002250 TCTCGCGAGACAGAAAACGC 61.002 55.000 33.84 0.00 46.08 4.84
123 124 3.231501 GCGAGACAGAAAACGCGT 58.768 55.556 5.58 5.58 41.49 6.01
124 125 1.563173 GCGAGACAGAAAACGCGTT 59.437 52.632 20.79 20.79 41.49 4.84
125 126 0.042448 GCGAGACAGAAAACGCGTTT 60.042 50.000 30.36 30.36 41.49 3.60
126 127 1.593793 GCGAGACAGAAAACGCGTTTT 60.594 47.619 41.02 41.02 44.59 2.43
127 128 2.700694 CGAGACAGAAAACGCGTTTTT 58.299 42.857 40.53 29.41 42.26 1.94
155 156 2.571757 CGAGAGGCACGGCTGTAA 59.428 61.111 0.00 0.00 0.00 2.41
156 157 1.805945 CGAGAGGCACGGCTGTAAC 60.806 63.158 0.00 0.00 0.00 2.50
157 158 1.592223 GAGAGGCACGGCTGTAACT 59.408 57.895 0.00 0.00 0.00 2.24
158 159 0.458716 GAGAGGCACGGCTGTAACTC 60.459 60.000 16.93 16.93 32.90 3.01
159 160 0.900647 AGAGGCACGGCTGTAACTCT 60.901 55.000 20.05 20.05 36.26 3.24
160 161 0.458716 GAGGCACGGCTGTAACTCTC 60.459 60.000 17.23 9.98 31.13 3.20
161 162 1.805945 GGCACGGCTGTAACTCTCG 60.806 63.158 0.00 0.00 0.00 4.04
162 163 2.445438 GCACGGCTGTAACTCTCGC 61.445 63.158 0.00 0.00 0.00 5.03
163 164 2.152699 CACGGCTGTAACTCTCGCG 61.153 63.158 0.00 0.00 0.00 5.87
164 165 2.330372 ACGGCTGTAACTCTCGCGA 61.330 57.895 9.26 9.26 0.00 5.87
165 166 1.154093 CGGCTGTAACTCTCGCGAA 60.154 57.895 11.33 0.02 0.00 4.70
166 167 0.731514 CGGCTGTAACTCTCGCGAAA 60.732 55.000 11.33 0.00 0.00 3.46
167 168 0.992802 GGCTGTAACTCTCGCGAAAG 59.007 55.000 11.33 9.68 0.00 2.62
507 508 3.430333 TTTTCCGTTTCCAAGAAGCAC 57.570 42.857 0.00 0.00 0.00 4.40
508 509 0.941542 TTCCGTTTCCAAGAAGCACG 59.058 50.000 0.00 0.00 0.00 5.34
509 510 0.882927 TCCGTTTCCAAGAAGCACGG 60.883 55.000 12.30 12.30 40.22 4.94
510 511 1.082104 CGTTTCCAAGAAGCACGGC 60.082 57.895 0.00 0.00 0.00 5.68
511 512 1.285950 GTTTCCAAGAAGCACGGCC 59.714 57.895 0.00 0.00 0.00 6.13
512 513 2.258013 TTTCCAAGAAGCACGGCCG 61.258 57.895 26.86 26.86 0.00 6.13
513 514 2.951475 TTTCCAAGAAGCACGGCCGT 62.951 55.000 28.70 28.70 0.00 5.68
537 538 2.167161 CGAAAGCAATACCGTGCCA 58.833 52.632 0.00 0.00 46.14 4.92
538 539 0.179200 CGAAAGCAATACCGTGCCAC 60.179 55.000 0.00 0.00 46.14 5.01
539 540 1.165270 GAAAGCAATACCGTGCCACT 58.835 50.000 0.00 0.00 46.14 4.00
540 541 1.130561 GAAAGCAATACCGTGCCACTC 59.869 52.381 0.00 0.00 46.14 3.51
541 542 1.019278 AAGCAATACCGTGCCACTCG 61.019 55.000 0.00 0.00 46.14 4.18
542 543 1.740296 GCAATACCGTGCCACTCGT 60.740 57.895 0.00 0.00 38.66 4.18
543 544 1.966493 GCAATACCGTGCCACTCGTG 61.966 60.000 0.00 0.00 38.66 4.35
555 556 1.961793 CACTCGTGGAAGGAAAACCA 58.038 50.000 0.00 0.00 0.00 3.67
556 557 2.504367 CACTCGTGGAAGGAAAACCAT 58.496 47.619 0.00 0.00 38.48 3.55
557 558 2.226437 CACTCGTGGAAGGAAAACCATG 59.774 50.000 0.00 0.00 42.52 3.66
558 559 2.105821 ACTCGTGGAAGGAAAACCATGA 59.894 45.455 0.00 0.00 45.97 3.07
559 560 2.484264 CTCGTGGAAGGAAAACCATGAC 59.516 50.000 0.00 0.00 44.15 3.06
560 561 2.105821 TCGTGGAAGGAAAACCATGACT 59.894 45.455 0.00 0.00 44.15 3.41
561 562 2.484264 CGTGGAAGGAAAACCATGACTC 59.516 50.000 0.00 0.00 43.47 3.36
562 563 3.756117 GTGGAAGGAAAACCATGACTCT 58.244 45.455 0.00 0.00 38.48 3.24
563 564 4.145052 GTGGAAGGAAAACCATGACTCTT 58.855 43.478 0.00 0.00 38.48 2.85
564 565 4.022849 GTGGAAGGAAAACCATGACTCTTG 60.023 45.833 0.00 0.00 38.48 3.02
565 566 4.145052 GGAAGGAAAACCATGACTCTTGT 58.855 43.478 0.00 0.00 0.00 3.16
566 567 4.022849 GGAAGGAAAACCATGACTCTTGTG 60.023 45.833 0.00 0.00 0.00 3.33
567 568 4.437682 AGGAAAACCATGACTCTTGTGA 57.562 40.909 0.00 0.00 0.00 3.58
568 569 4.792068 AGGAAAACCATGACTCTTGTGAA 58.208 39.130 0.00 0.00 0.00 3.18
569 570 5.200483 AGGAAAACCATGACTCTTGTGAAA 58.800 37.500 0.00 0.00 0.00 2.69
570 571 5.300286 AGGAAAACCATGACTCTTGTGAAAG 59.700 40.000 0.00 0.00 0.00 2.62
571 572 5.299279 GGAAAACCATGACTCTTGTGAAAGA 59.701 40.000 0.00 0.00 0.00 2.52
572 573 6.183360 GGAAAACCATGACTCTTGTGAAAGAA 60.183 38.462 0.00 0.00 0.00 2.52
573 574 6.773976 AAACCATGACTCTTGTGAAAGAAA 57.226 33.333 0.00 0.00 0.00 2.52
574 575 6.773976 AACCATGACTCTTGTGAAAGAAAA 57.226 33.333 0.00 0.00 0.00 2.29
575 576 6.773976 ACCATGACTCTTGTGAAAGAAAAA 57.226 33.333 0.00 0.00 0.00 1.94
621 622 1.360820 AAAACCAAACCAAAACGCCG 58.639 45.000 0.00 0.00 0.00 6.46
622 623 0.460459 AAACCAAACCAAAACGCCGG 60.460 50.000 0.00 0.00 0.00 6.13
623 624 1.321074 AACCAAACCAAAACGCCGGA 61.321 50.000 5.05 0.00 0.00 5.14
624 625 1.321074 ACCAAACCAAAACGCCGGAA 61.321 50.000 5.05 0.00 0.00 4.30
625 626 0.179108 CCAAACCAAAACGCCGGAAA 60.179 50.000 5.05 0.00 0.00 3.13
626 627 1.641577 CAAACCAAAACGCCGGAAAA 58.358 45.000 5.05 0.00 0.00 2.29
627 628 2.000447 CAAACCAAAACGCCGGAAAAA 59.000 42.857 5.05 0.00 0.00 1.94
662 663 4.926485 CGTTTAAATAGTCGAAAACGCG 57.074 40.909 15.11 3.53 44.94 6.01
663 664 4.376916 CGTTTAAATAGTCGAAAACGCGT 58.623 39.130 5.58 5.58 44.94 6.01
664 665 4.253614 CGTTTAAATAGTCGAAAACGCGTG 59.746 41.667 14.98 0.00 44.94 5.34
665 666 2.221799 AAATAGTCGAAAACGCGTGC 57.778 45.000 14.98 4.51 0.00 5.34
666 667 0.092351 AATAGTCGAAAACGCGTGCG 59.908 50.000 14.98 17.73 46.03 5.34
667 668 1.680105 ATAGTCGAAAACGCGTGCGG 61.680 55.000 14.98 2.58 44.69 5.69
668 669 2.730006 TAGTCGAAAACGCGTGCGGA 62.730 55.000 14.98 5.38 44.69 5.54
669 670 2.960659 TCGAAAACGCGTGCGGAA 60.961 55.556 14.98 0.00 44.69 4.30
670 671 2.052941 CGAAAACGCGTGCGGAAA 60.053 55.556 14.98 0.00 44.69 3.13
671 672 1.651730 CGAAAACGCGTGCGGAAAA 60.652 52.632 14.98 0.00 44.69 2.29
672 673 1.194896 CGAAAACGCGTGCGGAAAAA 61.195 50.000 14.98 0.00 44.69 1.94
673 674 1.125270 GAAAACGCGTGCGGAAAAAT 58.875 45.000 14.98 0.00 44.69 1.82
674 675 2.308811 GAAAACGCGTGCGGAAAAATA 58.691 42.857 14.98 0.00 44.69 1.40
675 676 2.402640 AAACGCGTGCGGAAAAATAA 57.597 40.000 14.98 0.00 44.69 1.40
676 677 2.402640 AACGCGTGCGGAAAAATAAA 57.597 40.000 14.98 0.00 44.69 1.40
677 678 2.402640 ACGCGTGCGGAAAAATAAAA 57.597 40.000 12.93 0.00 44.69 1.52
678 679 2.728922 ACGCGTGCGGAAAAATAAAAA 58.271 38.095 12.93 0.00 44.69 1.94
679 680 3.310246 ACGCGTGCGGAAAAATAAAAAT 58.690 36.364 12.93 0.00 44.69 1.82
680 681 4.474113 ACGCGTGCGGAAAAATAAAAATA 58.526 34.783 12.93 0.00 44.69 1.40
681 682 4.916249 ACGCGTGCGGAAAAATAAAAATAA 59.084 33.333 12.93 0.00 44.69 1.40
682 683 5.401674 ACGCGTGCGGAAAAATAAAAATAAA 59.598 32.000 12.93 0.00 44.69 1.40
683 684 6.089685 ACGCGTGCGGAAAAATAAAAATAAAT 59.910 30.769 12.93 0.00 44.69 1.40
684 685 6.617923 CGCGTGCGGAAAAATAAAAATAAATC 59.382 34.615 6.30 0.00 35.56 2.17
685 686 6.897663 GCGTGCGGAAAAATAAAAATAAATCC 59.102 34.615 0.00 0.00 0.00 3.01
686 687 7.412020 GCGTGCGGAAAAATAAAAATAAATCCA 60.412 33.333 0.00 0.00 0.00 3.41
687 688 8.436200 CGTGCGGAAAAATAAAAATAAATCCAA 58.564 29.630 0.00 0.00 0.00 3.53
696 697 7.770801 ATAAAAATAAATCCAAAAGGAGCGC 57.229 32.000 0.00 0.00 0.00 5.92
697 698 3.801114 AATAAATCCAAAAGGAGCGCC 57.199 42.857 2.29 0.00 0.00 6.53
698 699 1.470051 TAAATCCAAAAGGAGCGCCC 58.530 50.000 2.29 5.07 33.31 6.13
699 700 0.541764 AAATCCAAAAGGAGCGCCCA 60.542 50.000 15.92 0.00 37.41 5.36
700 701 0.967380 AATCCAAAAGGAGCGCCCAG 60.967 55.000 15.92 4.36 37.41 4.45
701 702 1.852157 ATCCAAAAGGAGCGCCCAGA 61.852 55.000 15.92 6.06 37.41 3.86
702 703 2.042831 CCAAAAGGAGCGCCCAGAG 61.043 63.158 15.92 4.35 37.41 3.35
703 704 2.360475 AAAAGGAGCGCCCAGAGC 60.360 61.111 15.92 0.00 37.41 4.09
733 734 0.299003 GCGAATAGCTGAGAACGTGC 59.701 55.000 0.00 0.00 44.04 5.34
734 735 0.924090 CGAATAGCTGAGAACGTGCC 59.076 55.000 0.00 0.00 0.00 5.01
735 736 1.735700 CGAATAGCTGAGAACGTGCCA 60.736 52.381 0.00 0.00 0.00 4.92
736 737 2.346803 GAATAGCTGAGAACGTGCCAA 58.653 47.619 0.00 0.00 0.00 4.52
737 738 2.015736 ATAGCTGAGAACGTGCCAAG 57.984 50.000 0.00 0.00 0.00 3.61
738 739 0.679505 TAGCTGAGAACGTGCCAAGT 59.320 50.000 0.00 0.00 0.00 3.16
739 740 0.679505 AGCTGAGAACGTGCCAAGTA 59.320 50.000 0.00 0.00 0.00 2.24
740 741 1.070134 AGCTGAGAACGTGCCAAGTAA 59.930 47.619 0.00 0.00 0.00 2.24
741 742 1.194772 GCTGAGAACGTGCCAAGTAAC 59.805 52.381 0.00 0.00 0.00 2.50
742 743 1.455786 CTGAGAACGTGCCAAGTAACG 59.544 52.381 0.00 0.00 45.15 3.18
743 744 0.163146 GAGAACGTGCCAAGTAACGC 59.837 55.000 0.00 0.00 43.49 4.84
744 745 0.249741 AGAACGTGCCAAGTAACGCT 60.250 50.000 0.00 0.00 43.49 5.07
745 746 0.110823 GAACGTGCCAAGTAACGCTG 60.111 55.000 0.00 0.00 43.49 5.18
746 747 0.531090 AACGTGCCAAGTAACGCTGA 60.531 50.000 0.00 0.00 43.49 4.26
747 748 0.320421 ACGTGCCAAGTAACGCTGAT 60.320 50.000 0.00 0.00 43.49 2.90
748 749 0.370273 CGTGCCAAGTAACGCTGATC 59.630 55.000 0.00 0.00 32.40 2.92
749 750 1.438651 GTGCCAAGTAACGCTGATCA 58.561 50.000 0.00 0.00 0.00 2.92
750 751 2.009774 GTGCCAAGTAACGCTGATCAT 58.990 47.619 0.00 0.00 0.00 2.45
751 752 2.420022 GTGCCAAGTAACGCTGATCATT 59.580 45.455 0.00 0.00 0.00 2.57
752 753 2.419673 TGCCAAGTAACGCTGATCATTG 59.580 45.455 0.00 0.00 0.00 2.82
753 754 2.792542 GCCAAGTAACGCTGATCATTGC 60.793 50.000 0.00 0.00 0.00 3.56
759 760 3.817787 GCTGATCATTGCGAGGCA 58.182 55.556 0.00 0.00 36.47 4.75
760 761 1.354506 GCTGATCATTGCGAGGCAC 59.645 57.895 0.00 0.00 38.71 5.01
772 773 2.182030 AGGCACTCGAAGTAGCGC 59.818 61.111 0.00 0.00 0.00 5.92
773 774 2.182030 GGCACTCGAAGTAGCGCT 59.818 61.111 17.26 17.26 0.00 5.92
774 775 1.874466 GGCACTCGAAGTAGCGCTC 60.874 63.158 16.34 5.88 0.00 5.03
775 776 2.218239 GCACTCGAAGTAGCGCTCG 61.218 63.158 16.34 12.59 0.00 5.03
776 777 1.134901 CACTCGAAGTAGCGCTCGT 59.865 57.895 16.34 3.76 0.00 4.18
777 778 0.454620 CACTCGAAGTAGCGCTCGTT 60.455 55.000 16.34 8.88 0.00 3.85
778 779 1.081892 ACTCGAAGTAGCGCTCGTTA 58.918 50.000 16.34 0.00 0.00 3.18
779 780 1.466167 ACTCGAAGTAGCGCTCGTTAA 59.534 47.619 16.34 0.00 0.00 2.01
780 781 1.838943 CTCGAAGTAGCGCTCGTTAAC 59.161 52.381 16.34 6.07 0.00 2.01
781 782 1.466167 TCGAAGTAGCGCTCGTTAACT 59.534 47.619 16.34 8.97 0.00 2.24
782 783 2.672874 TCGAAGTAGCGCTCGTTAACTA 59.327 45.455 16.34 0.00 0.00 2.24
783 784 3.027710 CGAAGTAGCGCTCGTTAACTAG 58.972 50.000 16.34 5.74 0.00 2.57
784 785 3.484886 CGAAGTAGCGCTCGTTAACTAGT 60.485 47.826 16.34 0.00 0.00 2.57
785 786 3.402058 AGTAGCGCTCGTTAACTAGTG 57.598 47.619 16.34 14.56 0.00 2.74
786 787 2.097142 AGTAGCGCTCGTTAACTAGTGG 59.903 50.000 16.34 8.71 0.00 4.00
787 788 0.458025 AGCGCTCGTTAACTAGTGGC 60.458 55.000 18.92 16.09 0.00 5.01
788 789 0.734942 GCGCTCGTTAACTAGTGGCA 60.735 55.000 18.92 0.00 0.00 4.92
789 790 0.989890 CGCTCGTTAACTAGTGGCAC 59.010 55.000 10.29 10.29 0.00 5.01
790 791 1.356938 GCTCGTTAACTAGTGGCACC 58.643 55.000 15.27 0.00 0.00 5.01
791 792 2.005560 GCTCGTTAACTAGTGGCACCC 61.006 57.143 15.27 0.00 0.00 4.61
797 798 0.250597 AACTAGTGGCACCCGGAAAC 60.251 55.000 15.27 0.00 0.00 2.78
834 835 4.924305 TGATGATGAATAAAAGCCTGCC 57.076 40.909 0.00 0.00 0.00 4.85
838 839 0.709992 TGAATAAAAGCCTGCCCCCT 59.290 50.000 0.00 0.00 0.00 4.79
850 851 3.012722 CCCCCTAGAACGGCCCAA 61.013 66.667 0.00 0.00 0.00 4.12
856 857 1.279846 CCTAGAACGGCCCAAAACCTA 59.720 52.381 0.00 0.00 0.00 3.08
857 858 2.629051 CTAGAACGGCCCAAAACCTAG 58.371 52.381 0.00 0.00 0.00 3.02
858 859 0.769247 AGAACGGCCCAAAACCTAGT 59.231 50.000 0.00 0.00 0.00 2.57
859 860 0.879090 GAACGGCCCAAAACCTAGTG 59.121 55.000 0.00 0.00 0.00 2.74
860 861 1.176619 AACGGCCCAAAACCTAGTGC 61.177 55.000 0.00 0.00 0.00 4.40
861 862 2.340328 CGGCCCAAAACCTAGTGCC 61.340 63.158 0.00 0.00 35.55 5.01
862 863 1.982395 GGCCCAAAACCTAGTGCCC 60.982 63.158 0.00 0.00 32.74 5.36
863 864 1.076727 GCCCAAAACCTAGTGCCCT 59.923 57.895 0.00 0.00 0.00 5.19
864 865 0.330267 GCCCAAAACCTAGTGCCCTA 59.670 55.000 0.00 0.00 0.00 3.53
865 866 1.272258 GCCCAAAACCTAGTGCCCTAA 60.272 52.381 0.00 0.00 0.00 2.69
866 867 2.623239 GCCCAAAACCTAGTGCCCTAAT 60.623 50.000 0.00 0.00 0.00 1.73
899 900 2.918968 GCTCGTATCGAAAGCCTAGAGC 60.919 54.545 0.00 0.00 42.10 4.09
949 950 3.905678 CACTCCGCTCTAGCCCCG 61.906 72.222 0.00 0.00 37.91 5.73
1476 1486 1.330655 ATCTCACCCGCTTCCACGAT 61.331 55.000 0.00 0.00 34.06 3.73
1479 1489 4.778143 ACCCGCTTCCACGATGCC 62.778 66.667 0.00 0.00 34.06 4.40
1698 1708 1.216710 CGTGGAGCTCAAGGAGTCC 59.783 63.158 17.19 0.00 33.59 3.85
1983 1993 1.226686 GCGCCGATCTCATTCATGCT 61.227 55.000 0.00 0.00 0.00 3.79
2010 2020 0.881118 ACGCGGCAAACATCAAGATT 59.119 45.000 12.47 0.00 0.00 2.40
2028 2038 2.214376 TTGCGATGGGGAAGTTTGAT 57.786 45.000 0.00 0.00 0.00 2.57
2034 2044 0.039618 TGGGGAAGTTTGATGAGGCC 59.960 55.000 0.00 0.00 0.00 5.19
2035 2045 0.039618 GGGGAAGTTTGATGAGGCCA 59.960 55.000 5.01 0.00 0.00 5.36
2040 2050 3.633986 GGAAGTTTGATGAGGCCATAAGG 59.366 47.826 5.01 0.00 32.09 2.69
2044 2054 0.183492 TGATGAGGCCATAAGGGTGC 59.817 55.000 5.01 0.00 39.65 5.01
2046 2056 1.699634 GATGAGGCCATAAGGGTGCTA 59.300 52.381 5.01 0.00 39.65 3.49
2051 2061 1.032794 GCCATAAGGGTGCTAAAGGC 58.967 55.000 0.00 0.00 39.65 4.35
2143 2153 2.593956 AACCAGGAGAAGGTCGGGC 61.594 63.158 0.00 0.00 38.76 6.13
2184 2194 2.647529 TCGCTTGCGACATTCTAGAA 57.352 45.000 13.93 7.82 0.00 2.10
2227 2237 1.153429 AAGGTGGCCGAAGCGTATC 60.153 57.895 0.00 0.00 41.24 2.24
2235 2245 1.324736 GCCGAAGCGTATCTTGAAGTG 59.675 52.381 0.00 0.00 34.56 3.16
2259 2269 3.502920 CTCACTGTACGAGATGGTGAAC 58.497 50.000 0.00 0.00 36.65 3.18
2365 2375 1.486310 TCGCAGCTAAGATTGGATGGT 59.514 47.619 0.00 0.00 0.00 3.55
2391 2401 1.002544 CTTCTGACAGGGAAGGTGACC 59.997 57.143 1.81 0.00 37.22 4.02
2472 2482 3.330701 AGCATTATGGGGTAGGGTATGTG 59.669 47.826 0.00 0.00 0.00 3.21
2644 2654 2.105766 ACACGATGGGAAGGTACTACC 58.894 52.381 0.00 0.00 38.49 3.18
2674 2684 7.494298 TCTGTTTACTTTTCTTTTCAAATGGGC 59.506 33.333 0.00 0.00 0.00 5.36
2689 2699 0.817634 TGGGCGTTCACTCAAACAGG 60.818 55.000 0.00 0.00 0.00 4.00
2711 2721 9.136323 ACAGGAACATGATTTCTTTCTTTTAGT 57.864 29.630 0.00 0.00 0.00 2.24
2789 2799 4.143137 GGTTTGTTTTTGCATATTCCTGCG 60.143 41.667 0.00 0.00 45.30 5.18
2813 2823 7.178074 CGTTTTAGCTAAGTTTACATGCTACC 58.822 38.462 6.24 0.00 36.19 3.18
2814 2824 7.148540 CGTTTTAGCTAAGTTTACATGCTACCA 60.149 37.037 6.24 0.00 36.19 3.25
2879 2899 2.563179 AGTACAGACTGTTGGGTGCTAG 59.437 50.000 14.50 0.00 33.41 3.42
2880 2900 1.424638 ACAGACTGTTGGGTGCTAGT 58.575 50.000 1.07 0.00 0.00 2.57
2881 2901 2.605257 ACAGACTGTTGGGTGCTAGTA 58.395 47.619 1.07 0.00 0.00 1.82
2882 2902 2.299297 ACAGACTGTTGGGTGCTAGTAC 59.701 50.000 1.07 1.77 0.00 2.73
3418 3438 1.866015 TGAGATCAGGACGGACCAAT 58.134 50.000 0.00 0.00 42.04 3.16
3419 3439 1.482182 TGAGATCAGGACGGACCAATG 59.518 52.381 0.00 0.00 42.04 2.82
3452 3472 7.295201 CGAGGACGACTCATTTTGAAAAATTA 58.705 34.615 11.28 0.00 46.98 1.40
3494 3514 1.333177 GTGCCAACCCACATAAACCA 58.667 50.000 0.00 0.00 35.80 3.67
3583 3603 3.472652 ACAGTGTTTGTATTCAAGGCGA 58.527 40.909 0.00 0.00 38.56 5.54
3666 3701 1.475280 GAAGCATGAATTGAGCTGCCA 59.525 47.619 0.00 0.00 38.86 4.92
3699 3734 0.471780 TCCTTCAGCCCTCACAGTCA 60.472 55.000 0.00 0.00 0.00 3.41
3747 3782 6.974048 TCTTGATATTGCCAATGAAATGAACG 59.026 34.615 0.00 0.00 0.00 3.95
3773 3808 3.369381 CTGACCCAGCGGAGTATTG 57.631 57.895 0.00 0.00 0.00 1.90
3778 3813 2.588877 CAGCGGAGTATTGGGCGG 60.589 66.667 0.00 0.00 0.00 6.13
3792 3827 0.741221 GGGCGGTAGACTTCAGCTTG 60.741 60.000 4.40 0.00 0.00 4.01
3837 3876 7.335627 TGTTAACTAACTGAATGGTATCTGGG 58.664 38.462 7.22 0.00 37.12 4.45
3842 3888 2.092753 ACTGAATGGTATCTGGGCTGTG 60.093 50.000 0.00 0.00 0.00 3.66
3870 3916 4.330250 ACTGAATGTTCTGCAGCATAGTT 58.670 39.130 9.47 0.00 33.03 2.24
3920 3966 2.912624 GCTGTGTGCCTTGGCAGAC 61.913 63.158 28.02 28.02 35.02 3.51
3932 3978 0.400213 TGGCAGACCCAAGTTCGAAT 59.600 50.000 0.00 0.00 41.82 3.34
3937 3983 1.978580 AGACCCAAGTTCGAATCCTGT 59.021 47.619 0.00 0.00 0.00 4.00
3942 3988 0.400213 AAGTTCGAATCCTGTGGGCA 59.600 50.000 0.00 0.00 0.00 5.36
3955 4001 3.181487 CCTGTGGGCAGAATTTATTTCGG 60.181 47.826 0.00 0.00 45.28 4.30
3957 4003 2.758423 GTGGGCAGAATTTATTTCGGGT 59.242 45.455 0.00 0.00 39.46 5.28
4028 4074 1.840635 GCTCCTCCCCTGTTGTTCTAT 59.159 52.381 0.00 0.00 0.00 1.98
4029 4075 2.239907 GCTCCTCCCCTGTTGTTCTATT 59.760 50.000 0.00 0.00 0.00 1.73
4104 4150 9.110502 GAGTTTCGGAATTAATTCTATGAAGGT 57.889 33.333 23.85 15.81 37.00 3.50
4119 4165 3.784178 TGAAGGTCTCTCATCCACTTCT 58.216 45.455 0.00 0.00 36.28 2.85
4137 4183 3.551635 TCTCCTCCATAATCCCCTCTC 57.448 52.381 0.00 0.00 0.00 3.20
4181 4227 3.415212 TGCCAGCATATAAAGATCAGGC 58.585 45.455 0.00 0.00 39.95 4.85
4239 4285 2.325583 TTTCTTCGAGTGCACCAACT 57.674 45.000 14.63 0.00 0.00 3.16
4335 4390 1.808945 GTCTCATTGCAGGGAACAGTG 59.191 52.381 0.00 0.00 0.00 3.66
4336 4391 1.699083 TCTCATTGCAGGGAACAGTGA 59.301 47.619 0.00 0.00 33.39 3.41
4337 4392 2.106338 TCTCATTGCAGGGAACAGTGAA 59.894 45.455 0.00 0.00 33.97 3.18
4410 4476 5.417894 CCCGGCTAAAGAAATCTAGGTTTTT 59.582 40.000 1.72 0.00 0.00 1.94
4419 4485 5.535030 AGAAATCTAGGTTTTTGACACCCAC 59.465 40.000 1.72 0.00 34.44 4.61
4430 4496 1.077068 ACACCCACACCACCACAAG 60.077 57.895 0.00 0.00 0.00 3.16
4436 4502 2.819608 CCCACACCACCACAAGATTTAG 59.180 50.000 0.00 0.00 0.00 1.85
4493 4559 4.000331 ACTCCATTAGCATTCTCATCCG 58.000 45.455 0.00 0.00 0.00 4.18
4572 4643 5.243954 AGGGAGGAAAAGCAGTGAAAATTAC 59.756 40.000 0.00 0.00 0.00 1.89
4683 4765 4.096382 CCACAGAATTCGTCCAATAAAGGG 59.904 45.833 0.00 0.00 0.00 3.95
4800 4882 3.940209 TCACTCAAATCCAAACCATGC 57.060 42.857 0.00 0.00 0.00 4.06
4801 4883 3.499338 TCACTCAAATCCAAACCATGCT 58.501 40.909 0.00 0.00 0.00 3.79
4998 5138 2.906354 ACGATGCTTCCCTGTAATGAC 58.094 47.619 0.00 0.00 0.00 3.06
4999 5139 2.501723 ACGATGCTTCCCTGTAATGACT 59.498 45.455 0.00 0.00 0.00 3.41
5000 5140 3.704566 ACGATGCTTCCCTGTAATGACTA 59.295 43.478 0.00 0.00 0.00 2.59
5001 5141 4.161565 ACGATGCTTCCCTGTAATGACTAA 59.838 41.667 0.00 0.00 0.00 2.24
5002 5142 5.163301 ACGATGCTTCCCTGTAATGACTAAT 60.163 40.000 0.00 0.00 0.00 1.73
5003 5143 5.178252 CGATGCTTCCCTGTAATGACTAATG 59.822 44.000 0.00 0.00 0.00 1.90
5045 5185 7.355778 CCTTTTGACTTTGAGTTGATCAGTAC 58.644 38.462 0.00 0.00 39.68 2.73
5212 5360 1.074405 AGCATTCATGTCACCTGGTGT 59.926 47.619 25.15 4.61 34.79 4.16
5214 5362 2.352030 GCATTCATGTCACCTGGTGTTG 60.352 50.000 25.15 19.76 34.79 3.33
5222 5370 2.362077 GTCACCTGGTGTTGAAGCAATT 59.638 45.455 25.15 0.00 35.42 2.32
5267 5415 0.249073 AAGTCGATTCTGATCCGGCG 60.249 55.000 0.00 0.00 0.00 6.46
5271 5419 1.134936 TCGATTCTGATCCGGCGAAAA 60.135 47.619 9.30 0.00 0.00 2.29
5335 5483 6.764308 TTCTTTCCTCTATTTTGATGCCAG 57.236 37.500 0.00 0.00 0.00 4.85
5338 5486 6.721208 TCTTTCCTCTATTTTGATGCCAGTTT 59.279 34.615 0.00 0.00 0.00 2.66
5339 5487 5.902613 TCCTCTATTTTGATGCCAGTTTG 57.097 39.130 0.00 0.00 0.00 2.93
5340 5488 4.158394 TCCTCTATTTTGATGCCAGTTTGC 59.842 41.667 0.00 0.00 0.00 3.68
5365 5513 6.738114 TGTTCTGCAGTAGAAGAAATTTTGG 58.262 36.000 14.67 0.00 45.71 3.28
5374 5522 9.696917 CAGTAGAAGAAATTTTGGCTGTAAATT 57.303 29.630 0.00 0.00 36.91 1.82
5379 5550 7.581011 AGAAATTTTGGCTGTAAATTTAGCG 57.419 32.000 13.95 0.00 42.27 4.26
5407 5578 1.710816 AGCCTCCTGTACCATCTAGC 58.289 55.000 0.00 0.00 0.00 3.42
5418 5592 2.603021 ACCATCTAGCAGATCCGACAT 58.397 47.619 0.00 0.00 31.32 3.06
5450 5624 7.775053 AAAGTAATCCAGACTTTATTTGGCA 57.225 32.000 0.00 0.00 43.61 4.92
5492 5666 3.591527 TGGTTGAACTATTGGGTGAGGAT 59.408 43.478 0.00 0.00 0.00 3.24
5578 5765 0.675633 GCCATTTTGCTGTGACCAGT 59.324 50.000 0.00 0.00 41.02 4.00
5622 5810 0.745468 GTAACGGAGGGCGAGATCTT 59.255 55.000 0.00 0.00 0.00 2.40
5676 5864 0.801251 GACTTTGCTGCCTGTGCTAG 59.199 55.000 0.00 0.00 38.71 3.42
5714 5902 0.825010 AGCTCAAAGGGCCACACAAG 60.825 55.000 6.18 0.00 0.00 3.16
5721 5909 2.985847 GGCCACACAAGTCCTGCC 60.986 66.667 0.00 0.00 0.00 4.85
5732 5923 4.340950 CACAAGTCCTGCCTTTTTCCTTTA 59.659 41.667 0.00 0.00 0.00 1.85
5754 5945 5.596836 AAACTTCATGTTCTTCTTTGGCA 57.403 34.783 0.00 0.00 38.03 4.92
5758 5949 2.095110 TCATGTTCTTCTTTGGCATGCG 60.095 45.455 12.44 0.00 37.44 4.73
5761 5952 0.881118 TTCTTCTTTGGCATGCGTCC 59.119 50.000 12.44 0.00 0.00 4.79
5788 5979 6.177610 AGTTTCAGTTTCTTGGTCACAGTTA 58.822 36.000 0.00 0.00 0.00 2.24
5951 6146 4.253685 GTTCATTTACAGTAGGAGCAGCA 58.746 43.478 0.00 0.00 0.00 4.41
6022 10773 2.162681 AGCCAAGTGATGCAACTAACC 58.837 47.619 0.00 0.00 0.00 2.85
6051 10802 5.715279 TCACTACCTACTACAATGTGCTTCT 59.285 40.000 0.00 0.00 0.00 2.85
6053 10804 6.531948 CACTACCTACTACAATGTGCTTCTTC 59.468 42.308 0.00 0.00 0.00 2.87
6054 10805 5.483685 ACCTACTACAATGTGCTTCTTCA 57.516 39.130 0.00 0.00 0.00 3.02
6055 10806 6.054860 ACCTACTACAATGTGCTTCTTCAT 57.945 37.500 0.00 0.00 0.00 2.57
6062 10813 1.612676 TGTGCTTCTTCATTGCTGCT 58.387 45.000 0.00 0.00 0.00 4.24
6092 10843 1.674962 GCATTCTCCATGGAAGTGAGC 59.325 52.381 17.00 12.39 32.81 4.26
6130 10881 3.793144 CGCCGTCTTCTTGCTGCC 61.793 66.667 0.00 0.00 0.00 4.85
6137 10888 0.880278 TCTTCTTGCTGCCGTGTCAC 60.880 55.000 0.00 0.00 0.00 3.67
6156 10907 4.038642 GTCACTGTGTCTTCTTCTTCTCCT 59.961 45.833 7.79 0.00 0.00 3.69
6165 10916 2.454832 CTTCTTCTCCTGTGCCGGCA 62.455 60.000 29.03 29.03 0.00 5.69
6166 10917 2.435586 CTTCTCCTGTGCCGGCAG 60.436 66.667 33.73 20.03 36.31 4.85
6192 10943 1.680522 CCTGGATGACCACCTCCTCG 61.681 65.000 0.00 0.00 41.77 4.63
6194 10945 2.060980 GGATGACCACCTCCTCGCT 61.061 63.158 0.00 0.00 35.97 4.93
6241 10992 2.027460 CTTGTTTGCCGGTGGTGC 59.973 61.111 1.90 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.221981 CGAGAGTCACAGTTTTGCTTCC 59.778 50.000 0.00 0.00 0.00 3.46
1 2 2.348966 GCGAGAGTCACAGTTTTGCTTC 60.349 50.000 0.00 0.00 0.00 3.86
2 3 1.599542 GCGAGAGTCACAGTTTTGCTT 59.400 47.619 0.00 0.00 0.00 3.91
3 4 1.221414 GCGAGAGTCACAGTTTTGCT 58.779 50.000 0.00 0.00 0.00 3.91
4 5 0.111089 CGCGAGAGTCACAGTTTTGC 60.111 55.000 0.00 0.00 0.00 3.68
5 6 1.487482 TCGCGAGAGTCACAGTTTTG 58.513 50.000 3.71 0.00 34.84 2.44
6 7 2.218953 TTCGCGAGAGTCACAGTTTT 57.781 45.000 9.59 0.00 43.69 2.43
7 8 2.128035 CTTTCGCGAGAGTCACAGTTT 58.872 47.619 17.92 0.00 43.69 2.66
8 9 1.603172 CCTTTCGCGAGAGTCACAGTT 60.603 52.381 23.28 0.00 43.69 3.16
9 10 0.039074 CCTTTCGCGAGAGTCACAGT 60.039 55.000 23.28 0.00 43.69 3.55
10 11 0.241213 TCCTTTCGCGAGAGTCACAG 59.759 55.000 23.28 9.32 43.69 3.66
11 12 0.671796 TTCCTTTCGCGAGAGTCACA 59.328 50.000 23.28 3.70 43.69 3.58
12 13 1.779569 TTTCCTTTCGCGAGAGTCAC 58.220 50.000 23.28 0.00 43.69 3.67
13 14 2.519377 TTTTCCTTTCGCGAGAGTCA 57.481 45.000 23.28 8.47 43.69 3.41
48 49 2.032426 GTGCCTCTCGAAAACGGAAAAA 59.968 45.455 0.00 0.00 0.00 1.94
49 50 1.600485 GTGCCTCTCGAAAACGGAAAA 59.400 47.619 0.00 0.00 0.00 2.29
50 51 1.223187 GTGCCTCTCGAAAACGGAAA 58.777 50.000 0.00 0.00 0.00 3.13
51 52 0.942410 CGTGCCTCTCGAAAACGGAA 60.942 55.000 0.00 0.00 0.00 4.30
52 53 1.372499 CGTGCCTCTCGAAAACGGA 60.372 57.895 0.00 0.00 0.00 4.69
53 54 2.380410 CCGTGCCTCTCGAAAACGG 61.380 63.158 8.89 8.89 46.69 4.44
54 55 3.011760 GCCGTGCCTCTCGAAAACG 62.012 63.158 0.00 0.00 0.00 3.60
55 56 2.677979 GGCCGTGCCTCTCGAAAAC 61.678 63.158 7.58 0.00 46.69 2.43
56 57 2.358247 GGCCGTGCCTCTCGAAAA 60.358 61.111 7.58 0.00 46.69 2.29
65 66 3.701604 CTAGAGTCACGGCCGTGCC 62.702 68.421 45.55 38.78 46.75 5.01
66 67 2.202623 CTAGAGTCACGGCCGTGC 60.203 66.667 45.55 38.06 45.04 5.34
67 68 2.202623 GCTAGAGTCACGGCCGTG 60.203 66.667 45.04 45.04 46.64 4.94
68 69 3.812019 CGCTAGAGTCACGGCCGT 61.812 66.667 28.70 28.70 0.00 5.68
69 70 4.554363 CCGCTAGAGTCACGGCCG 62.554 72.222 26.86 26.86 40.55 6.13
70 71 2.615262 CTTCCGCTAGAGTCACGGCC 62.615 65.000 12.83 0.00 46.49 6.13
71 72 1.226717 CTTCCGCTAGAGTCACGGC 60.227 63.158 12.83 3.72 46.49 5.68
72 73 1.658686 AGCTTCCGCTAGAGTCACGG 61.659 60.000 11.75 11.75 46.79 4.94
73 74 1.015109 TAGCTTCCGCTAGAGTCACG 58.985 55.000 0.00 0.00 46.79 4.35
85 86 2.608268 GAGAGTCACGGTTTAGCTTCC 58.392 52.381 0.00 0.00 0.00 3.46
86 87 2.251893 CGAGAGTCACGGTTTAGCTTC 58.748 52.381 1.62 0.00 0.00 3.86
87 88 1.669211 GCGAGAGTCACGGTTTAGCTT 60.669 52.381 11.95 0.00 0.00 3.74
88 89 0.109226 GCGAGAGTCACGGTTTAGCT 60.109 55.000 11.95 0.00 0.00 3.32
89 90 1.403972 CGCGAGAGTCACGGTTTAGC 61.404 60.000 11.95 0.00 0.00 3.09
90 91 0.167470 TCGCGAGAGTCACGGTTTAG 59.833 55.000 3.71 0.00 34.84 1.85
91 92 2.246841 TCGCGAGAGTCACGGTTTA 58.753 52.632 3.71 0.00 34.84 2.01
92 93 3.036577 TCGCGAGAGTCACGGTTT 58.963 55.556 3.71 0.00 34.84 3.27
102 103 1.002250 GCGTTTTCTGTCTCGCGAGA 61.002 55.000 33.84 33.84 39.35 4.04
103 104 1.412606 GCGTTTTCTGTCTCGCGAG 59.587 57.895 30.03 30.03 39.35 5.03
104 105 3.534160 GCGTTTTCTGTCTCGCGA 58.466 55.556 9.26 9.26 39.35 5.87
106 107 0.042448 AAACGCGTTTTCTGTCTCGC 60.042 50.000 30.36 0.00 44.23 5.03
107 108 2.362668 AAAACGCGTTTTCTGTCTCG 57.637 45.000 36.93 0.00 38.27 4.04
128 129 1.332375 CGTGCCTCTCGGAAACAAAAA 59.668 47.619 0.00 0.00 0.00 1.94
129 130 0.941542 CGTGCCTCTCGGAAACAAAA 59.058 50.000 0.00 0.00 0.00 2.44
130 131 2.612200 CGTGCCTCTCGGAAACAAA 58.388 52.632 0.00 0.00 0.00 2.83
131 132 4.354155 CGTGCCTCTCGGAAACAA 57.646 55.556 0.00 0.00 0.00 2.83
138 139 1.805945 GTTACAGCCGTGCCTCTCG 60.806 63.158 0.00 0.00 0.00 4.04
139 140 0.458716 GAGTTACAGCCGTGCCTCTC 60.459 60.000 0.00 0.00 0.00 3.20
140 141 0.900647 AGAGTTACAGCCGTGCCTCT 60.901 55.000 0.00 0.00 32.00 3.69
141 142 0.458716 GAGAGTTACAGCCGTGCCTC 60.459 60.000 0.00 0.00 0.00 4.70
142 143 1.592223 GAGAGTTACAGCCGTGCCT 59.408 57.895 0.00 0.00 0.00 4.75
143 144 1.805945 CGAGAGTTACAGCCGTGCC 60.806 63.158 0.00 0.00 0.00 5.01
144 145 2.445438 GCGAGAGTTACAGCCGTGC 61.445 63.158 0.00 0.00 0.00 5.34
145 146 2.152699 CGCGAGAGTTACAGCCGTG 61.153 63.158 0.00 0.00 0.00 4.94
146 147 1.859427 TTCGCGAGAGTTACAGCCGT 61.859 55.000 9.59 0.00 43.69 5.68
147 148 0.731514 TTTCGCGAGAGTTACAGCCG 60.732 55.000 9.59 0.00 43.69 5.52
148 149 0.992802 CTTTCGCGAGAGTTACAGCC 59.007 55.000 17.92 0.00 43.69 4.85
149 150 0.367210 GCTTTCGCGAGAGTTACAGC 59.633 55.000 25.34 13.76 43.69 4.40
150 151 1.387084 GTGCTTTCGCGAGAGTTACAG 59.613 52.381 25.34 8.49 43.69 2.74
151 152 1.269361 TGTGCTTTCGCGAGAGTTACA 60.269 47.619 25.34 24.68 43.69 2.41
152 153 1.415374 TGTGCTTTCGCGAGAGTTAC 58.585 50.000 25.34 22.82 43.69 2.50
153 154 1.790623 GTTGTGCTTTCGCGAGAGTTA 59.209 47.619 25.34 13.74 43.69 2.24
154 155 0.582005 GTTGTGCTTTCGCGAGAGTT 59.418 50.000 25.34 0.00 43.69 3.01
155 156 1.222115 GGTTGTGCTTTCGCGAGAGT 61.222 55.000 25.34 0.00 43.69 3.24
156 157 1.221466 TGGTTGTGCTTTCGCGAGAG 61.221 55.000 21.42 21.42 43.69 3.20
157 158 0.602638 ATGGTTGTGCTTTCGCGAGA 60.603 50.000 9.59 3.35 39.65 4.04
158 159 0.453282 CATGGTTGTGCTTTCGCGAG 60.453 55.000 9.59 0.00 39.65 5.03
159 160 1.573932 CATGGTTGTGCTTTCGCGA 59.426 52.632 3.71 3.71 39.65 5.87
160 161 2.082366 GCATGGTTGTGCTTTCGCG 61.082 57.895 0.00 0.00 41.82 5.87
161 162 1.734117 GGCATGGTTGTGCTTTCGC 60.734 57.895 0.00 0.00 44.45 4.70
162 163 0.109597 GAGGCATGGTTGTGCTTTCG 60.110 55.000 0.00 0.00 44.45 3.46
163 164 1.200948 GAGAGGCATGGTTGTGCTTTC 59.799 52.381 0.00 0.00 44.45 2.62
164 165 1.251251 GAGAGGCATGGTTGTGCTTT 58.749 50.000 0.00 0.00 44.45 3.51
165 166 2.952714 GAGAGGCATGGTTGTGCTT 58.047 52.632 0.00 0.00 44.45 3.91
166 167 4.730487 GAGAGGCATGGTTGTGCT 57.270 55.556 0.00 0.00 44.45 4.40
486 487 3.732471 CGTGCTTCTTGGAAACGGAAAAA 60.732 43.478 0.00 0.00 0.00 1.94
487 488 2.223386 CGTGCTTCTTGGAAACGGAAAA 60.223 45.455 0.00 0.00 0.00 2.29
488 489 1.332375 CGTGCTTCTTGGAAACGGAAA 59.668 47.619 0.00 0.00 0.00 3.13
489 490 0.941542 CGTGCTTCTTGGAAACGGAA 59.058 50.000 0.00 0.00 0.00 4.30
490 491 2.612200 CGTGCTTCTTGGAAACGGA 58.388 52.632 0.00 0.00 0.00 4.69
491 492 1.574428 CCGTGCTTCTTGGAAACGG 59.426 57.895 8.47 8.47 46.69 4.44
492 493 1.082104 GCCGTGCTTCTTGGAAACG 60.082 57.895 0.00 0.00 0.00 3.60
493 494 1.285950 GGCCGTGCTTCTTGGAAAC 59.714 57.895 0.00 0.00 0.00 2.78
494 495 2.258013 CGGCCGTGCTTCTTGGAAA 61.258 57.895 19.50 0.00 0.00 3.13
495 496 2.668212 CGGCCGTGCTTCTTGGAA 60.668 61.111 19.50 0.00 0.00 3.53
496 497 3.936203 ACGGCCGTGCTTCTTGGA 61.936 61.111 33.75 0.00 0.00 3.53
497 498 3.726517 CACGGCCGTGCTTCTTGG 61.727 66.667 42.21 19.27 39.39 3.61
514 515 1.012234 CGGTATTGCTTTCGCGAGC 60.012 57.895 9.59 11.55 43.00 5.03
515 516 0.025001 CACGGTATTGCTTTCGCGAG 59.975 55.000 9.59 0.00 39.65 5.03
516 517 1.962092 GCACGGTATTGCTTTCGCGA 61.962 55.000 3.71 3.71 39.59 5.87
517 518 1.580132 GCACGGTATTGCTTTCGCG 60.580 57.895 0.00 0.00 39.59 5.87
518 519 1.226295 GGCACGGTATTGCTTTCGC 60.226 57.895 0.00 0.00 42.56 4.70
519 520 0.179200 GTGGCACGGTATTGCTTTCG 60.179 55.000 0.00 0.00 42.56 3.46
520 521 1.130561 GAGTGGCACGGTATTGCTTTC 59.869 52.381 12.71 0.00 42.56 2.62
521 522 1.165270 GAGTGGCACGGTATTGCTTT 58.835 50.000 12.71 0.00 42.56 3.51
522 523 1.019278 CGAGTGGCACGGTATTGCTT 61.019 55.000 12.71 0.00 42.56 3.91
523 524 1.447838 CGAGTGGCACGGTATTGCT 60.448 57.895 12.71 0.00 42.56 3.91
524 525 1.740296 ACGAGTGGCACGGTATTGC 60.740 57.895 12.71 0.00 42.18 3.56
525 526 1.358725 CCACGAGTGGCACGGTATTG 61.359 60.000 12.71 6.40 44.73 1.90
526 527 1.079405 CCACGAGTGGCACGGTATT 60.079 57.895 12.71 0.00 44.73 1.89
527 528 2.577059 CCACGAGTGGCACGGTAT 59.423 61.111 12.71 0.00 44.73 2.73
534 535 2.747220 GGTTTTCCTTCCACGAGTGGC 61.747 57.143 16.95 1.04 42.76 5.01
535 536 1.235724 GGTTTTCCTTCCACGAGTGG 58.764 55.000 15.74 15.74 43.64 4.00
536 537 1.961793 TGGTTTTCCTTCCACGAGTG 58.038 50.000 0.00 0.00 41.38 3.51
537 538 2.105821 TCATGGTTTTCCTTCCACGAGT 59.894 45.455 0.00 0.00 41.38 4.18
538 539 2.484264 GTCATGGTTTTCCTTCCACGAG 59.516 50.000 0.00 0.00 41.38 4.18
539 540 2.105821 AGTCATGGTTTTCCTTCCACGA 59.894 45.455 0.00 0.00 41.38 4.35
540 541 2.484264 GAGTCATGGTTTTCCTTCCACG 59.516 50.000 0.00 0.00 41.38 4.94
541 542 3.756117 AGAGTCATGGTTTTCCTTCCAC 58.244 45.455 0.00 0.00 41.38 4.02
542 543 4.144297 CAAGAGTCATGGTTTTCCTTCCA 58.856 43.478 0.00 0.00 41.38 3.53
543 544 4.022849 CACAAGAGTCATGGTTTTCCTTCC 60.023 45.833 0.00 0.00 41.38 3.46
544 545 4.821805 TCACAAGAGTCATGGTTTTCCTTC 59.178 41.667 0.00 0.00 41.38 3.46
545 546 4.792068 TCACAAGAGTCATGGTTTTCCTT 58.208 39.130 0.00 0.00 41.38 3.36
546 547 4.437682 TCACAAGAGTCATGGTTTTCCT 57.562 40.909 0.00 0.00 41.38 3.36
547 548 5.299279 TCTTTCACAAGAGTCATGGTTTTCC 59.701 40.000 0.00 0.00 33.80 3.13
548 549 6.377327 TCTTTCACAAGAGTCATGGTTTTC 57.623 37.500 0.00 0.00 33.80 2.29
549 550 6.773976 TTCTTTCACAAGAGTCATGGTTTT 57.226 33.333 0.00 0.00 40.28 2.43
550 551 6.773976 TTTCTTTCACAAGAGTCATGGTTT 57.226 33.333 0.00 0.00 40.28 3.27
551 552 6.773976 TTTTCTTTCACAAGAGTCATGGTT 57.226 33.333 0.00 0.00 40.28 3.67
552 553 6.773976 TTTTTCTTTCACAAGAGTCATGGT 57.226 33.333 0.00 0.00 40.28 3.55
601 602 1.732809 CGGCGTTTTGGTTTGGTTTTT 59.267 42.857 0.00 0.00 0.00 1.94
602 603 1.360820 CGGCGTTTTGGTTTGGTTTT 58.639 45.000 0.00 0.00 0.00 2.43
603 604 0.460459 CCGGCGTTTTGGTTTGGTTT 60.460 50.000 6.01 0.00 0.00 3.27
604 605 1.142097 CCGGCGTTTTGGTTTGGTT 59.858 52.632 6.01 0.00 0.00 3.67
605 606 1.321074 TTCCGGCGTTTTGGTTTGGT 61.321 50.000 6.01 0.00 0.00 3.67
606 607 0.179108 TTTCCGGCGTTTTGGTTTGG 60.179 50.000 6.01 0.00 0.00 3.28
607 608 1.641577 TTTTCCGGCGTTTTGGTTTG 58.358 45.000 6.01 0.00 0.00 2.93
608 609 2.381725 TTTTTCCGGCGTTTTGGTTT 57.618 40.000 6.01 0.00 0.00 3.27
635 636 8.038140 CGTTTTCGACTATTTAAACGGTTTTT 57.962 30.769 18.17 0.55 45.26 1.94
636 637 7.593417 CGTTTTCGACTATTTAAACGGTTTT 57.407 32.000 18.17 0.00 45.26 2.43
654 655 1.125270 ATTTTTCCGCACGCGTTTTC 58.875 45.000 10.22 0.04 37.81 2.29
655 656 2.402640 TATTTTTCCGCACGCGTTTT 57.597 40.000 10.22 0.00 37.81 2.43
656 657 2.402640 TTATTTTTCCGCACGCGTTT 57.597 40.000 10.22 0.00 37.81 3.60
657 658 2.402640 TTTATTTTTCCGCACGCGTT 57.597 40.000 10.22 0.00 37.81 4.84
658 659 2.402640 TTTTATTTTTCCGCACGCGT 57.597 40.000 5.58 5.58 37.81 6.01
659 660 3.963340 ATTTTTATTTTTCCGCACGCG 57.037 38.095 3.53 3.53 39.44 6.01
660 661 6.897663 GGATTTATTTTTATTTTTCCGCACGC 59.102 34.615 0.00 0.00 0.00 5.34
661 662 7.954447 TGGATTTATTTTTATTTTTCCGCACG 58.046 30.769 0.00 0.00 0.00 5.34
684 685 2.034066 TCTGGGCGCTCCTTTTGG 59.966 61.111 3.94 0.00 42.21 3.28
685 686 2.694760 GCTCTGGGCGCTCCTTTTG 61.695 63.158 3.94 0.00 36.20 2.44
686 687 2.360475 GCTCTGGGCGCTCCTTTT 60.360 61.111 3.94 0.00 36.20 2.27
704 705 2.995482 CTATTCGCCACGTGTCGC 59.005 61.111 15.09 10.47 0.00 5.19
705 706 1.516386 AGCTATTCGCCACGTGTCG 60.516 57.895 13.61 13.61 40.39 4.35
706 707 0.457853 TCAGCTATTCGCCACGTGTC 60.458 55.000 15.65 0.00 40.39 3.67
707 708 0.458543 CTCAGCTATTCGCCACGTGT 60.459 55.000 15.65 0.00 40.39 4.49
708 709 0.179137 TCTCAGCTATTCGCCACGTG 60.179 55.000 9.08 9.08 40.39 4.49
709 710 0.530744 TTCTCAGCTATTCGCCACGT 59.469 50.000 0.00 0.00 40.39 4.49
710 711 0.924090 GTTCTCAGCTATTCGCCACG 59.076 55.000 0.00 0.00 40.39 4.94
711 712 0.924090 CGTTCTCAGCTATTCGCCAC 59.076 55.000 0.00 0.00 40.39 5.01
712 713 0.530744 ACGTTCTCAGCTATTCGCCA 59.469 50.000 0.00 0.00 40.39 5.69
713 714 0.924090 CACGTTCTCAGCTATTCGCC 59.076 55.000 0.00 0.00 40.39 5.54
714 715 0.299003 GCACGTTCTCAGCTATTCGC 59.701 55.000 0.00 0.00 39.57 4.70
715 716 0.924090 GGCACGTTCTCAGCTATTCG 59.076 55.000 0.00 0.00 0.00 3.34
716 717 2.010145 TGGCACGTTCTCAGCTATTC 57.990 50.000 0.00 0.00 0.00 1.75
717 718 2.289694 ACTTGGCACGTTCTCAGCTATT 60.290 45.455 0.00 0.00 0.00 1.73
718 719 1.276421 ACTTGGCACGTTCTCAGCTAT 59.724 47.619 0.00 0.00 0.00 2.97
719 720 0.679505 ACTTGGCACGTTCTCAGCTA 59.320 50.000 0.00 0.00 0.00 3.32
720 721 0.679505 TACTTGGCACGTTCTCAGCT 59.320 50.000 0.67 0.00 0.00 4.24
721 722 1.194772 GTTACTTGGCACGTTCTCAGC 59.805 52.381 0.67 0.00 0.00 4.26
722 723 1.455786 CGTTACTTGGCACGTTCTCAG 59.544 52.381 0.67 0.00 0.00 3.35
723 724 1.493772 CGTTACTTGGCACGTTCTCA 58.506 50.000 0.67 0.00 0.00 3.27
724 725 0.163146 GCGTTACTTGGCACGTTCTC 59.837 55.000 0.67 0.00 38.70 2.87
725 726 0.249741 AGCGTTACTTGGCACGTTCT 60.250 50.000 0.67 0.00 38.70 3.01
726 727 0.110823 CAGCGTTACTTGGCACGTTC 60.111 55.000 0.67 0.00 38.70 3.95
727 728 0.531090 TCAGCGTTACTTGGCACGTT 60.531 50.000 0.67 0.00 38.70 3.99
728 729 0.320421 ATCAGCGTTACTTGGCACGT 60.320 50.000 1.18 1.18 38.70 4.49
729 730 0.370273 GATCAGCGTTACTTGGCACG 59.630 55.000 0.00 0.00 39.49 5.34
730 731 1.438651 TGATCAGCGTTACTTGGCAC 58.561 50.000 0.00 0.00 0.00 5.01
731 732 2.401583 ATGATCAGCGTTACTTGGCA 57.598 45.000 0.09 0.00 0.00 4.92
732 733 2.792542 GCAATGATCAGCGTTACTTGGC 60.793 50.000 0.09 0.00 0.00 4.52
733 734 3.056952 GCAATGATCAGCGTTACTTGG 57.943 47.619 0.09 0.00 0.00 3.61
742 743 1.094073 AGTGCCTCGCAATGATCAGC 61.094 55.000 0.09 0.00 41.47 4.26
743 744 0.935898 GAGTGCCTCGCAATGATCAG 59.064 55.000 0.09 0.00 41.47 2.90
744 745 0.807275 CGAGTGCCTCGCAATGATCA 60.807 55.000 10.89 0.00 46.75 2.92
745 746 1.930100 CGAGTGCCTCGCAATGATC 59.070 57.895 10.89 0.00 46.75 2.92
746 747 4.115279 CGAGTGCCTCGCAATGAT 57.885 55.556 10.89 0.00 46.75 2.45
754 755 1.874466 GCGCTACTTCGAGTGCCTC 60.874 63.158 0.00 0.00 45.36 4.70
755 756 2.182030 GCGCTACTTCGAGTGCCT 59.818 61.111 0.00 0.00 45.36 4.75
758 759 0.454620 AACGAGCGCTACTTCGAGTG 60.455 55.000 21.54 1.89 0.00 3.51
759 760 1.081892 TAACGAGCGCTACTTCGAGT 58.918 50.000 21.54 11.89 0.00 4.18
760 761 1.838943 GTTAACGAGCGCTACTTCGAG 59.161 52.381 21.54 5.62 0.00 4.04
761 762 1.466167 AGTTAACGAGCGCTACTTCGA 59.534 47.619 21.54 0.00 0.00 3.71
762 763 1.892468 AGTTAACGAGCGCTACTTCG 58.108 50.000 11.50 13.27 0.00 3.79
763 764 3.784994 CACTAGTTAACGAGCGCTACTTC 59.215 47.826 11.50 0.00 0.00 3.01
764 765 3.427233 CCACTAGTTAACGAGCGCTACTT 60.427 47.826 11.50 7.14 0.00 2.24
765 766 2.097142 CCACTAGTTAACGAGCGCTACT 59.903 50.000 11.50 12.99 0.00 2.57
766 767 2.448219 CCACTAGTTAACGAGCGCTAC 58.552 52.381 11.50 4.05 0.00 3.58
767 768 1.202222 GCCACTAGTTAACGAGCGCTA 60.202 52.381 11.50 0.00 0.00 4.26
768 769 0.458025 GCCACTAGTTAACGAGCGCT 60.458 55.000 11.27 11.27 0.00 5.92
769 770 0.734942 TGCCACTAGTTAACGAGCGC 60.735 55.000 14.82 15.83 0.00 5.92
770 771 0.989890 GTGCCACTAGTTAACGAGCG 59.010 55.000 14.82 6.24 0.00 5.03
771 772 1.356938 GGTGCCACTAGTTAACGAGC 58.643 55.000 14.82 8.19 0.00 5.03
772 773 1.734707 CGGGTGCCACTAGTTAACGAG 60.735 57.143 13.50 13.50 0.00 4.18
773 774 0.244450 CGGGTGCCACTAGTTAACGA 59.756 55.000 0.00 0.00 0.00 3.85
774 775 0.738412 CCGGGTGCCACTAGTTAACG 60.738 60.000 0.00 0.00 0.00 3.18
775 776 0.609662 TCCGGGTGCCACTAGTTAAC 59.390 55.000 0.00 0.00 0.00 2.01
776 777 1.350071 TTCCGGGTGCCACTAGTTAA 58.650 50.000 0.00 0.00 0.00 2.01
777 778 1.002315 GTTTCCGGGTGCCACTAGTTA 59.998 52.381 0.00 0.00 0.00 2.24
778 779 0.250597 GTTTCCGGGTGCCACTAGTT 60.251 55.000 0.00 0.00 0.00 2.24
779 780 1.373812 GTTTCCGGGTGCCACTAGT 59.626 57.895 0.00 0.00 0.00 2.57
780 781 1.740296 CGTTTCCGGGTGCCACTAG 60.740 63.158 0.00 0.00 0.00 2.57
781 782 2.344500 CGTTTCCGGGTGCCACTA 59.656 61.111 0.00 0.00 0.00 2.74
791 792 0.748450 TACTATCCAGCCCGTTTCCG 59.252 55.000 0.00 0.00 0.00 4.30
797 798 4.271696 TCATCATTTACTATCCAGCCCG 57.728 45.455 0.00 0.00 0.00 6.13
807 808 8.139989 GCAGGCTTTTATTCATCATCATTTACT 58.860 33.333 0.00 0.00 0.00 2.24
810 811 6.285990 GGCAGGCTTTTATTCATCATCATTT 58.714 36.000 0.00 0.00 0.00 2.32
834 835 0.963856 GTTTTGGGCCGTTCTAGGGG 60.964 60.000 0.00 0.00 0.00 4.79
838 839 1.980036 ACTAGGTTTTGGGCCGTTCTA 59.020 47.619 0.00 0.00 0.00 2.10
850 851 2.570302 ACGTGATTAGGGCACTAGGTTT 59.430 45.455 0.00 0.00 34.18 3.27
856 857 3.261981 CCTAAACGTGATTAGGGCACT 57.738 47.619 15.55 0.00 45.46 4.40
862 863 4.030134 ACGAGCTCCTAAACGTGATTAG 57.970 45.455 8.47 0.00 37.58 1.73
863 864 5.559608 CGATACGAGCTCCTAAACGTGATTA 60.560 44.000 8.47 0.00 39.28 1.75
864 865 4.608951 GATACGAGCTCCTAAACGTGATT 58.391 43.478 8.47 0.00 39.28 2.57
865 866 3.303857 CGATACGAGCTCCTAAACGTGAT 60.304 47.826 8.47 0.00 39.28 3.06
866 867 2.031314 CGATACGAGCTCCTAAACGTGA 59.969 50.000 8.47 0.00 39.28 4.35
899 900 4.729918 GTGGAGTGGGCTGGGCTG 62.730 72.222 0.00 0.00 0.00 4.85
1017 1021 3.151022 CTGAGGACGAGGGAGGCC 61.151 72.222 0.00 0.00 0.00 5.19
1074 1084 1.224870 GAGCAGAGGGTTTAGGGGC 59.775 63.158 0.00 0.00 0.00 5.80
1458 1468 1.982395 ATCGTGGAAGCGGGTGAGA 60.982 57.895 0.00 0.00 0.00 3.27
1476 1486 1.002274 GGAGAGGAAGGAGAGGGCA 59.998 63.158 0.00 0.00 0.00 5.36
1479 1489 2.131067 GCGGGAGAGGAAGGAGAGG 61.131 68.421 0.00 0.00 0.00 3.69
1983 1993 0.882484 TGTTTGCCGCGTCAATCTCA 60.882 50.000 2.36 1.13 0.00 3.27
1998 2008 2.428171 CCCCATCGCAATCTTGATGTTT 59.572 45.455 2.01 0.00 40.25 2.83
2010 2020 1.004161 TCATCAAACTTCCCCATCGCA 59.996 47.619 0.00 0.00 0.00 5.10
2014 2024 1.342374 GGCCTCATCAAACTTCCCCAT 60.342 52.381 0.00 0.00 0.00 4.00
2028 2038 1.590591 TTAGCACCCTTATGGCCTCA 58.409 50.000 3.32 0.00 37.83 3.86
2044 2054 3.190874 CCTTCTTAGCGACAGCCTTTAG 58.809 50.000 0.00 0.00 46.67 1.85
2046 2056 1.348036 ACCTTCTTAGCGACAGCCTTT 59.652 47.619 0.00 0.00 46.67 3.11
2051 2061 1.819288 TCTCCACCTTCTTAGCGACAG 59.181 52.381 0.00 0.00 0.00 3.51
2184 2194 4.164221 TCAGGTTCAGACACTTCCTTCTTT 59.836 41.667 0.00 0.00 0.00 2.52
2235 2245 2.093106 ACCATCTCGTACAGTGAGGAC 58.907 52.381 0.00 0.00 34.19 3.85
2259 2269 7.028962 TCAAAGATATTGCCTTGTCAAATTCG 58.971 34.615 0.00 0.00 0.00 3.34
2365 2375 3.330701 ACCTTCCCTGTCAGAAGCAATAA 59.669 43.478 0.00 0.00 39.55 1.40
2391 2401 1.865865 CCAAATATGGGACGGACTCG 58.134 55.000 0.00 0.00 43.51 4.18
2472 2482 2.022238 GCAGCCCCCAGGTTGTTATAC 61.022 57.143 0.00 0.00 45.72 1.47
2674 2684 3.559655 TCATGTTCCTGTTTGAGTGAACG 59.440 43.478 0.00 0.00 39.89 3.95
2689 2699 9.617975 CCAGACTAAAAGAAAGAAATCATGTTC 57.382 33.333 0.00 0.00 0.00 3.18
2711 2721 4.344679 ACAACCATTGAATTTTCTGCCAGA 59.655 37.500 0.00 0.00 0.00 3.86
2789 2799 8.036273 TGGTAGCATGTAAACTTAGCTAAAAC 57.964 34.615 7.74 4.60 39.26 2.43
2820 2838 6.035327 GCCAACAATCTTTAGCTTAGCATTTG 59.965 38.462 7.07 3.51 0.00 2.32
3315 3335 6.419484 TCTTTGTCAGGTTGATCTCAGTTA 57.581 37.500 0.00 0.00 0.00 2.24
3399 3419 1.482182 CATTGGTCCGTCCTGATCTCA 59.518 52.381 0.00 0.00 37.07 3.27
3418 3438 0.892358 AGTCGTCCTCGGTTGTAGCA 60.892 55.000 0.00 0.00 37.69 3.49
3419 3439 0.179169 GAGTCGTCCTCGGTTGTAGC 60.179 60.000 0.00 0.00 37.69 3.58
3452 3472 4.396166 CCTTTGGAAGAAGTGCAATCGTAT 59.604 41.667 0.00 0.00 37.41 3.06
3460 3480 0.315251 GGCACCTTTGGAAGAAGTGC 59.685 55.000 4.90 4.90 35.17 4.40
3494 3514 0.534203 AGACATCACGTTTTGGCGGT 60.534 50.000 0.00 0.00 35.98 5.68
3583 3603 2.695666 CACTGTTGAGAGTATCGGGGAT 59.304 50.000 0.00 0.00 42.67 3.85
3666 3701 4.221482 GGCTGAAGGAAAGGTGATTGAATT 59.779 41.667 0.00 0.00 0.00 2.17
3699 3734 8.682936 AGAATAACAATCTGAAGAAGTTGTGT 57.317 30.769 10.19 0.00 33.33 3.72
3773 3808 0.741221 CAAGCTGAAGTCTACCGCCC 60.741 60.000 0.00 0.00 0.00 6.13
3778 3813 3.919216 TCTCTTGCAAGCTGAAGTCTAC 58.081 45.455 21.99 0.00 0.00 2.59
3792 3827 3.323403 ACAGCCCAGATACTATCTCTTGC 59.677 47.826 0.00 0.39 37.58 4.01
3837 3876 5.683859 CAGAACATTCAGTTAGTTCACAGC 58.316 41.667 0.00 0.00 43.00 4.40
3842 3888 4.214119 TGCTGCAGAACATTCAGTTAGTTC 59.786 41.667 20.43 0.00 41.51 3.01
3888 3934 3.730761 CAGCCGTGCTCTTGCCAC 61.731 66.667 0.00 0.00 36.40 5.01
3920 3966 1.453155 CCACAGGATTCGAACTTGGG 58.547 55.000 0.00 2.59 0.00 4.12
3932 3978 3.694072 CGAAATAAATTCTGCCCACAGGA 59.306 43.478 0.00 0.00 44.59 3.86
3937 3983 3.094484 ACCCGAAATAAATTCTGCCCA 57.906 42.857 0.00 0.00 35.79 5.36
3955 4001 7.136772 GTGTGAGACACCAAGTTTTAAATACC 58.863 38.462 0.00 0.00 43.05 2.73
3983 4029 4.693566 CCGCGGCATTATTATTAAGAAGGA 59.306 41.667 14.67 0.00 0.00 3.36
3984 4030 4.142687 CCCGCGGCATTATTATTAAGAAGG 60.143 45.833 22.85 0.00 0.00 3.46
3985 4031 4.142687 CCCCGCGGCATTATTATTAAGAAG 60.143 45.833 22.85 0.00 0.00 2.85
3986 4032 3.754323 CCCCGCGGCATTATTATTAAGAA 59.246 43.478 22.85 0.00 0.00 2.52
3987 4033 3.340034 CCCCGCGGCATTATTATTAAGA 58.660 45.455 22.85 0.00 0.00 2.10
4037 4083 1.466856 TTTGGGCTATGCTGCAGAAG 58.533 50.000 20.43 12.20 34.04 2.85
4104 4150 2.313041 TGGAGGAGAAGTGGATGAGAGA 59.687 50.000 0.00 0.00 0.00 3.10
4119 4165 4.172041 TGTTAGAGAGGGGATTATGGAGGA 59.828 45.833 0.00 0.00 0.00 3.71
4137 4183 4.991687 AGCTCGGAAGAACTTTTCTGTTAG 59.008 41.667 0.00 0.00 40.59 2.34
4181 4227 4.446719 GCAAACTGCTCTCAAAGATTTTGG 59.553 41.667 2.09 0.00 40.96 3.28
4215 4261 2.750166 TGGTGCACTCGAAGAAAAACAA 59.250 40.909 17.98 0.00 34.09 2.83
4216 4262 2.360844 TGGTGCACTCGAAGAAAAACA 58.639 42.857 17.98 0.00 34.09 2.83
4217 4263 3.105937 GTTGGTGCACTCGAAGAAAAAC 58.894 45.455 17.98 4.39 34.09 2.43
4218 4264 3.013921 AGTTGGTGCACTCGAAGAAAAA 58.986 40.909 17.98 0.00 34.09 1.94
4219 4265 2.639065 AGTTGGTGCACTCGAAGAAAA 58.361 42.857 17.98 0.00 34.09 2.29
4220 4266 2.325583 AGTTGGTGCACTCGAAGAAA 57.674 45.000 17.98 0.00 34.09 2.52
4221 4267 1.939934 CAAGTTGGTGCACTCGAAGAA 59.060 47.619 17.98 0.00 34.09 2.52
4226 4272 0.512952 GCTACAAGTTGGTGCACTCG 59.487 55.000 17.98 1.71 0.00 4.18
4239 4285 2.436417 GCTTCATTCTGGTGGCTACAA 58.564 47.619 1.52 0.00 0.00 2.41
4410 4476 1.853250 TTGTGGTGGTGTGGGTGTCA 61.853 55.000 0.00 0.00 0.00 3.58
4419 4485 4.286297 TCTCCTAAATCTTGTGGTGGTG 57.714 45.455 0.00 0.00 0.00 4.17
4472 4538 3.805108 GCGGATGAGAATGCTAATGGAGT 60.805 47.826 0.00 0.00 0.00 3.85
4493 4559 2.034685 GGAGAAGTTTCCTTTGGTGTGC 59.965 50.000 0.00 0.00 34.27 4.57
4572 4643 2.704572 CTTTCTGCCCTCACCACTTAG 58.295 52.381 0.00 0.00 0.00 2.18
4596 4668 2.224523 ACCTTTGGAGCTCGTCAATTCA 60.225 45.455 7.83 0.00 0.00 2.57
4683 4765 4.156455 TCCTAGGAAGATTGATTGCCAC 57.844 45.455 9.71 0.00 0.00 5.01
4976 5089 3.689649 GTCATTACAGGGAAGCATCGTTT 59.310 43.478 0.00 0.00 0.00 3.60
4998 5138 7.042797 AGGCATAACAAATTACTGCCATTAG 57.957 36.000 13.75 0.00 42.01 1.73
4999 5139 7.416964 AAGGCATAACAAATTACTGCCATTA 57.583 32.000 13.75 0.00 42.01 1.90
5000 5140 5.937975 AGGCATAACAAATTACTGCCATT 57.062 34.783 13.75 0.00 42.01 3.16
5001 5141 5.937975 AAGGCATAACAAATTACTGCCAT 57.062 34.783 13.75 0.00 42.01 4.40
5002 5142 5.736951 AAAGGCATAACAAATTACTGCCA 57.263 34.783 13.75 0.00 42.01 4.92
5003 5143 6.090763 GTCAAAAGGCATAACAAATTACTGCC 59.909 38.462 3.72 3.72 41.02 4.85
5045 5185 7.994194 AGCTGCATTTAAAAAGAAGAGGATAG 58.006 34.615 1.02 0.00 0.00 2.08
5222 5370 1.597854 CTGAGGTTCAGGCAACGCA 60.598 57.895 0.00 0.00 40.71 5.24
5267 5415 6.837992 TCCTAATTACTGTTGTGCGATTTTC 58.162 36.000 0.00 0.00 0.00 2.29
5271 5419 5.488341 AGTTCCTAATTACTGTTGTGCGAT 58.512 37.500 0.00 0.00 0.00 4.58
5365 5513 2.032178 CCTCCTGCGCTAAATTTACAGC 59.968 50.000 9.73 11.29 0.00 4.40
5374 5522 1.381327 AGGCTACCTCCTGCGCTAA 60.381 57.895 9.73 0.00 34.56 3.09
5447 5621 6.460676 CCAAGTTCCTATTCTTCATCATTGCC 60.461 42.308 0.00 0.00 0.00 4.52
5450 5624 7.890127 TCAACCAAGTTCCTATTCTTCATCATT 59.110 33.333 0.00 0.00 0.00 2.57
5575 5762 2.673523 CCCAGGGGCTTCTCACTG 59.326 66.667 0.00 0.00 0.00 3.66
5622 5810 7.504238 ACCTTATTAAGACACCAACAAATGTCA 59.496 33.333 4.96 0.00 46.34 3.58
5676 5864 3.577848 AGCTCACTGTGATATCCTGATCC 59.422 47.826 11.45 0.00 0.00 3.36
5714 5902 5.531122 AGTTTAAAGGAAAAAGGCAGGAC 57.469 39.130 0.00 0.00 0.00 3.85
5732 5923 5.596836 TGCCAAAGAAGAACATGAAGTTT 57.403 34.783 0.00 0.00 41.51 2.66
5754 5945 1.878953 AACTGAAACTTCGGACGCAT 58.121 45.000 5.28 0.00 37.03 4.73
5758 5949 3.626217 ACCAAGAAACTGAAACTTCGGAC 59.374 43.478 5.28 0.00 37.03 4.79
5761 5952 4.094294 TGTGACCAAGAAACTGAAACTTCG 59.906 41.667 0.00 0.00 0.00 3.79
5788 5979 1.668826 TAAGCTGAGGGTGGTGGAAT 58.331 50.000 0.00 0.00 0.00 3.01
5951 6146 4.712476 AGAACTTCAGAACAACATGAGCT 58.288 39.130 0.00 0.00 0.00 4.09
5962 6157 4.879197 TCAGAGCATGAGAACTTCAGAA 57.121 40.909 0.00 0.00 39.68 3.02
6022 10773 7.334421 AGCACATTGTAGTAGGTAGTGATTTTG 59.666 37.037 0.00 0.00 0.00 2.44
6130 10881 3.085443 AGAAGAAGACACAGTGACACG 57.915 47.619 7.81 0.00 0.00 4.49
6137 10888 4.305769 CACAGGAGAAGAAGAAGACACAG 58.694 47.826 0.00 0.00 0.00 3.66
6165 10916 2.673523 GTCATCCAGGTGCAGGCT 59.326 61.111 0.00 0.00 0.00 4.58
6166 10917 2.439156 GGTCATCCAGGTGCAGGC 60.439 66.667 0.00 0.00 0.00 4.85
6214 10965 1.733526 GCAAACAAGCTCCGTTGGT 59.266 52.632 2.48 0.00 0.00 3.67
6215 10966 1.007387 GGCAAACAAGCTCCGTTGG 60.007 57.895 2.48 1.18 34.17 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.