Multiple sequence alignment - TraesCS6A01G397900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G397900 chr6A 100.000 3023 0 0 1 3023 609030266 609033288 0.000000e+00 5583.0
1 TraesCS6A01G397900 chr6A 92.222 450 28 3 4 447 87270070 87269622 5.500000e-177 630.0
2 TraesCS6A01G397900 chr6A 91.759 449 28 4 4 445 5556359 5555913 1.540000e-172 616.0
3 TraesCS6A01G397900 chr6A 91.518 448 32 2 4 445 564727850 564727403 1.990000e-171 612.0
4 TraesCS6A01G397900 chr6A 89.888 445 41 4 4 446 612568587 612568145 1.220000e-158 569.0
5 TraesCS6A01G397900 chr6A 88.747 471 26 12 4 447 593571729 593571259 4.400000e-153 551.0
6 TraesCS6A01G397900 chr6B 90.547 1079 72 15 1952 3022 704450128 704451184 0.000000e+00 1400.0
7 TraesCS6A01G397900 chr6B 86.559 1235 104 26 743 1950 704448766 704449965 0.000000e+00 1304.0
8 TraesCS6A01G397900 chr6B 88.963 598 42 10 2432 3022 702926825 702927405 0.000000e+00 717.0
9 TraesCS6A01G397900 chr6B 92.222 360 17 5 2657 3012 702979716 702980068 1.620000e-137 499.0
10 TraesCS6A01G397900 chr6B 88.808 411 31 4 1543 1953 704445179 704445574 9.740000e-135 490.0
11 TraesCS6A01G397900 chr6B 86.652 457 30 9 4 431 47756754 47756300 7.580000e-131 477.0
12 TraesCS6A01G397900 chr6B 89.024 328 24 3 2534 2857 702901659 702901978 2.180000e-106 396.0
13 TraesCS6A01G397900 chr6B 85.938 192 7 5 2851 3022 702908220 702908411 1.430000e-43 187.0
14 TraesCS6A01G397900 chr6B 92.913 127 6 1 1953 2076 704445723 704445849 6.660000e-42 182.0
15 TraesCS6A01G397900 chr6B 86.719 128 10 2 2258 2378 703145894 703146021 5.260000e-28 135.0
16 TraesCS6A01G397900 chr6B 100.000 30 0 0 1952 1981 703047180 703047209 4.210000e-04 56.5
17 TraesCS6A01G397900 chr6D 86.953 1188 97 24 784 1951 462196654 462197803 0.000000e+00 1282.0
18 TraesCS6A01G397900 chr6D 88.394 1077 81 14 1952 3023 462197873 462198910 0.000000e+00 1256.0
19 TraesCS6A01G397900 chr6D 83.546 1252 112 40 737 1950 462181392 462182587 0.000000e+00 1085.0
20 TraesCS6A01G397900 chr6D 77.778 549 89 23 2370 2893 462183126 462183666 1.050000e-79 307.0
21 TraesCS6A01G397900 chr7B 91.778 450 30 3 4 446 128768026 128767577 1.190000e-173 619.0
22 TraesCS6A01G397900 chr7B 90.213 470 19 3 4 446 479235122 479234653 3.360000e-164 588.0
23 TraesCS6A01G397900 chr3A 90.991 444 32 4 10 446 720476675 720476233 2.600000e-165 592.0
24 TraesCS6A01G397900 chr3A 88.936 470 24 8 1 443 46046948 46047416 3.410000e-154 555.0
25 TraesCS6A01G397900 chr7A 88.839 448 44 5 1 447 14279753 14280195 2.050000e-151 545.0
26 TraesCS6A01G397900 chr7A 87.778 450 41 7 1 443 133665761 133666203 5.780000e-142 514.0
27 TraesCS6A01G397900 chr1B 87.526 473 31 8 1 445 62413657 62414129 3.450000e-144 521.0
28 TraesCS6A01G397900 chr1B 87.200 375 17 9 4 350 54123662 54123291 6.070000e-107 398.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G397900 chr6A 609030266 609033288 3022 False 5583 5583 100.00000 1 3023 1 chr6A.!!$F1 3022
1 TraesCS6A01G397900 chr6B 704445179 704451184 6005 False 844 1400 89.70675 743 3022 4 chr6B.!!$F7 2279
2 TraesCS6A01G397900 chr6B 702926825 702927405 580 False 717 717 88.96300 2432 3022 1 chr6B.!!$F3 590
3 TraesCS6A01G397900 chr6D 462196654 462198910 2256 False 1269 1282 87.67350 784 3023 2 chr6D.!!$F2 2239
4 TraesCS6A01G397900 chr6D 462181392 462183666 2274 False 696 1085 80.66200 737 2893 2 chr6D.!!$F1 2156

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
274 275 0.030638 TTTTTCGCTTGTGCTGGCTC 59.969 50.0 0.0 0.0 36.97 4.70 F
733 734 0.178995 TGGCAGCAGACATGACCAAA 60.179 50.0 0.0 0.0 0.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1174 4060 0.456221 GCCGGAGAAGACGATGAAGA 59.544 55.0 5.05 0.0 0.0 2.87 R
2671 5851 0.249073 AAGTCGATTCTGATCCGGCG 60.249 55.0 0.00 0.0 0.0 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.371267 CTTCACTCGGCGTTCGACA 60.371 57.895 6.85 0.00 43.74 4.35
20 21 2.742710 TTCACTCGGCGTTCGACAGG 62.743 60.000 6.85 0.00 43.74 4.00
21 22 4.719369 ACTCGGCGTTCGACAGGC 62.719 66.667 6.85 3.19 43.74 4.85
59 60 4.847444 GCCCTCGGCTTCCTCTGC 62.847 72.222 0.00 0.00 46.69 4.26
60 61 3.080121 CCCTCGGCTTCCTCTGCT 61.080 66.667 0.00 0.00 0.00 4.24
61 62 2.664081 CCCTCGGCTTCCTCTGCTT 61.664 63.158 0.00 0.00 0.00 3.91
62 63 1.153469 CCTCGGCTTCCTCTGCTTC 60.153 63.158 0.00 0.00 0.00 3.86
63 64 1.593787 CTCGGCTTCCTCTGCTTCA 59.406 57.895 0.00 0.00 0.00 3.02
64 65 0.177604 CTCGGCTTCCTCTGCTTCAT 59.822 55.000 0.00 0.00 0.00 2.57
66 67 0.107993 CGGCTTCCTCTGCTTCATCA 60.108 55.000 0.00 0.00 0.00 3.07
67 68 1.377536 GGCTTCCTCTGCTTCATCAC 58.622 55.000 0.00 0.00 0.00 3.06
69 70 1.649664 CTTCCTCTGCTTCATCACGG 58.350 55.000 0.00 0.00 0.00 4.94
74 75 1.672030 CTGCTTCATCACGGTGCCA 60.672 57.895 2.51 0.00 0.00 4.92
75 76 1.642037 CTGCTTCATCACGGTGCCAG 61.642 60.000 2.51 0.00 0.00 4.85
76 77 1.672356 GCTTCATCACGGTGCCAGT 60.672 57.895 2.51 0.00 0.00 4.00
77 78 1.639298 GCTTCATCACGGTGCCAGTC 61.639 60.000 2.51 0.00 0.00 3.51
78 79 1.354337 CTTCATCACGGTGCCAGTCG 61.354 60.000 2.51 0.00 0.00 4.18
79 80 3.490759 CATCACGGTGCCAGTCGC 61.491 66.667 2.51 0.00 38.31 5.19
124 125 4.821589 GACTGGAAGGCGAGCGGG 62.822 72.222 0.00 0.00 39.30 6.13
126 127 4.521062 CTGGAAGGCGAGCGGGAG 62.521 72.222 0.00 0.00 0.00 4.30
134 135 4.778143 CGAGCGGGAGGGGGTTTG 62.778 72.222 0.00 0.00 0.00 2.93
135 136 4.426313 GAGCGGGAGGGGGTTTGG 62.426 72.222 0.00 0.00 0.00 3.28
142 143 4.995058 AGGGGGTTTGGCGGGAGA 62.995 66.667 0.00 0.00 0.00 3.71
143 144 3.974293 GGGGGTTTGGCGGGAGAA 61.974 66.667 0.00 0.00 0.00 2.87
146 147 1.977009 GGGTTTGGCGGGAGAAAGG 60.977 63.158 0.00 0.00 0.00 3.11
147 148 1.977009 GGTTTGGCGGGAGAAAGGG 60.977 63.158 0.00 0.00 0.00 3.95
149 150 0.960861 GTTTGGCGGGAGAAAGGGAG 60.961 60.000 0.00 0.00 0.00 4.30
150 151 2.137177 TTTGGCGGGAGAAAGGGAGG 62.137 60.000 0.00 0.00 0.00 4.30
151 152 3.798511 GGCGGGAGAAAGGGAGGG 61.799 72.222 0.00 0.00 0.00 4.30
152 153 2.687566 GCGGGAGAAAGGGAGGGA 60.688 66.667 0.00 0.00 0.00 4.20
153 154 2.298661 GCGGGAGAAAGGGAGGGAA 61.299 63.158 0.00 0.00 0.00 3.97
154 155 1.636769 GCGGGAGAAAGGGAGGGAAT 61.637 60.000 0.00 0.00 0.00 3.01
156 157 0.553333 GGGAGAAAGGGAGGGAATGG 59.447 60.000 0.00 0.00 0.00 3.16
157 158 0.106469 GGAGAAAGGGAGGGAATGGC 60.106 60.000 0.00 0.00 0.00 4.40
158 159 0.464554 GAGAAAGGGAGGGAATGGCG 60.465 60.000 0.00 0.00 0.00 5.69
159 160 1.453928 GAAAGGGAGGGAATGGCGG 60.454 63.158 0.00 0.00 0.00 6.13
160 161 2.911221 GAAAGGGAGGGAATGGCGGG 62.911 65.000 0.00 0.00 0.00 6.13
162 163 3.878667 GGGAGGGAATGGCGGGAG 61.879 72.222 0.00 0.00 0.00 4.30
163 164 2.768344 GGAGGGAATGGCGGGAGA 60.768 66.667 0.00 0.00 0.00 3.71
164 165 2.375345 GGAGGGAATGGCGGGAGAA 61.375 63.158 0.00 0.00 0.00 2.87
165 166 1.607612 GAGGGAATGGCGGGAGAAA 59.392 57.895 0.00 0.00 0.00 2.52
166 167 0.464554 GAGGGAATGGCGGGAGAAAG 60.465 60.000 0.00 0.00 0.00 2.62
167 168 1.453928 GGGAATGGCGGGAGAAAGG 60.454 63.158 0.00 0.00 0.00 3.11
168 169 2.121538 GGAATGGCGGGAGAAAGGC 61.122 63.158 0.00 0.00 0.00 4.35
169 170 2.438434 AATGGCGGGAGAAAGGCG 60.438 61.111 0.00 0.00 35.52 5.52
170 171 2.869503 GAATGGCGGGAGAAAGGCGA 62.870 60.000 0.00 0.00 35.52 5.54
175 176 2.202810 GGGAGAAAGGCGAGCGAG 60.203 66.667 0.00 0.00 0.00 5.03
176 177 2.888051 GGAGAAAGGCGAGCGAGC 60.888 66.667 0.00 0.00 0.00 5.03
185 186 3.283684 CGAGCGAGCGGGAGAGAT 61.284 66.667 0.00 0.00 0.00 2.75
189 190 3.586961 CGAGCGGGAGAGATGCGA 61.587 66.667 0.00 0.00 0.00 5.10
190 191 2.334653 GAGCGGGAGAGATGCGAG 59.665 66.667 0.00 0.00 0.00 5.03
193 194 2.519541 CGGGAGAGATGCGAGGGA 60.520 66.667 0.00 0.00 0.00 4.20
194 195 2.127869 CGGGAGAGATGCGAGGGAA 61.128 63.158 0.00 0.00 0.00 3.97
196 197 0.541863 GGGAGAGATGCGAGGGAAAA 59.458 55.000 0.00 0.00 0.00 2.29
197 198 1.474143 GGGAGAGATGCGAGGGAAAAG 60.474 57.143 0.00 0.00 0.00 2.27
198 199 1.294857 GAGAGATGCGAGGGAAAAGC 58.705 55.000 0.00 0.00 0.00 3.51
200 201 0.741221 GAGATGCGAGGGAAAAGCGT 60.741 55.000 0.00 0.00 0.00 5.07
201 202 0.741221 AGATGCGAGGGAAAAGCGTC 60.741 55.000 1.08 1.08 44.64 5.19
202 203 1.003839 ATGCGAGGGAAAAGCGTCA 60.004 52.632 0.00 0.00 0.00 4.35
203 204 0.605319 ATGCGAGGGAAAAGCGTCAA 60.605 50.000 0.00 0.00 0.00 3.18
204 205 0.816018 TGCGAGGGAAAAGCGTCAAA 60.816 50.000 0.00 0.00 0.00 2.69
205 206 0.309612 GCGAGGGAAAAGCGTCAAAA 59.690 50.000 0.00 0.00 0.00 2.44
206 207 1.268845 GCGAGGGAAAAGCGTCAAAAA 60.269 47.619 0.00 0.00 0.00 1.94
221 222 1.068417 AAAAACGGCGGGAAAAGGC 59.932 52.632 13.24 0.00 0.00 4.35
228 229 4.796495 CGGGAAAAGGCCCTCGGG 62.796 72.222 0.00 0.00 46.44 5.14
229 230 3.658422 GGGAAAAGGCCCTCGGGT 61.658 66.667 0.00 0.00 45.12 5.28
231 232 2.436115 GAAAAGGCCCTCGGGTCG 60.436 66.667 0.00 0.00 46.16 4.79
232 233 4.717313 AAAAGGCCCTCGGGTCGC 62.717 66.667 0.00 0.00 46.16 5.19
259 260 3.292159 GGACCCACGCGCCTTTTT 61.292 61.111 5.73 0.00 0.00 1.94
260 261 2.254350 GACCCACGCGCCTTTTTC 59.746 61.111 5.73 0.00 0.00 2.29
261 262 3.588891 GACCCACGCGCCTTTTTCG 62.589 63.158 5.73 0.00 0.00 3.46
268 269 3.526029 CGCCTTTTTCGCTTGTGC 58.474 55.556 0.00 0.00 0.00 4.57
269 270 1.008538 CGCCTTTTTCGCTTGTGCT 60.009 52.632 0.00 0.00 36.97 4.40
273 274 0.031178 CTTTTTCGCTTGTGCTGGCT 59.969 50.000 0.00 0.00 36.97 4.75
274 275 0.030638 TTTTTCGCTTGTGCTGGCTC 59.969 50.000 0.00 0.00 36.97 4.70
278 279 4.666253 GCTTGTGCTGGCTCCCCA 62.666 66.667 0.00 0.00 39.32 4.96
279 280 2.115910 CTTGTGCTGGCTCCCCAA 59.884 61.111 0.00 0.00 41.58 4.12
280 281 1.975407 CTTGTGCTGGCTCCCCAAG 60.975 63.158 0.00 0.00 41.58 3.61
328 329 4.572571 TCCGCCGGCACCAGTTTT 62.573 61.111 28.98 0.00 0.00 2.43
329 330 4.341502 CCGCCGGCACCAGTTTTG 62.342 66.667 28.98 6.19 0.00 2.44
348 349 2.561373 CCTGAGCCGGCGAAAAAC 59.439 61.111 23.20 10.06 0.00 2.43
349 350 2.173382 CTGAGCCGGCGAAAAACG 59.827 61.111 23.20 2.51 45.66 3.60
354 355 3.666253 CCGGCGAAAAACGGGCTT 61.666 61.111 9.30 0.00 46.08 4.35
355 356 2.127003 CGGCGAAAAACGGGCTTC 60.127 61.111 0.00 0.00 42.83 3.86
357 358 1.081442 GGCGAAAAACGGGCTTCTG 60.081 57.895 0.00 0.00 42.83 3.02
358 359 1.081442 GCGAAAAACGGGCTTCTGG 60.081 57.895 0.00 0.00 42.83 3.86
359 360 1.579429 CGAAAAACGGGCTTCTGGG 59.421 57.895 0.00 0.00 38.46 4.45
361 362 1.532604 GAAAAACGGGCTTCTGGGGG 61.533 60.000 0.00 0.00 0.00 5.40
362 363 4.678743 AAACGGGCTTCTGGGGGC 62.679 66.667 0.00 0.00 0.00 5.80
368 369 4.021925 GCTTCTGGGGGCGTGACT 62.022 66.667 0.00 0.00 0.00 3.41
369 370 2.046892 CTTCTGGGGGCGTGACTG 60.047 66.667 0.00 0.00 0.00 3.51
370 371 3.612247 CTTCTGGGGGCGTGACTGG 62.612 68.421 0.00 0.00 0.00 4.00
371 372 4.631740 TCTGGGGGCGTGACTGGA 62.632 66.667 0.00 0.00 0.00 3.86
372 373 4.394712 CTGGGGGCGTGACTGGAC 62.395 72.222 0.00 0.00 0.00 4.02
373 374 4.954118 TGGGGGCGTGACTGGACT 62.954 66.667 0.00 0.00 0.00 3.85
374 375 4.394712 GGGGGCGTGACTGGACTG 62.395 72.222 0.00 0.00 0.00 3.51
376 377 2.426023 GGGCGTGACTGGACTGTT 59.574 61.111 0.00 0.00 0.00 3.16
377 378 1.227853 GGGCGTGACTGGACTGTTT 60.228 57.895 0.00 0.00 0.00 2.83
378 379 0.818040 GGGCGTGACTGGACTGTTTT 60.818 55.000 0.00 0.00 0.00 2.43
403 404 4.101790 CCAGCGCGGCAAAATCGT 62.102 61.111 8.83 0.00 0.00 3.73
404 405 2.574212 CAGCGCGGCAAAATCGTC 60.574 61.111 8.83 0.00 0.00 4.20
407 408 2.098298 CGCGGCAAAATCGTCTGG 59.902 61.111 0.00 0.00 0.00 3.86
408 409 2.485122 GCGGCAAAATCGTCTGGG 59.515 61.111 0.00 0.00 0.00 4.45
409 410 3.051392 GCGGCAAAATCGTCTGGGG 62.051 63.158 0.00 0.00 0.00 4.96
410 411 1.376683 CGGCAAAATCGTCTGGGGA 60.377 57.895 0.00 0.00 0.00 4.81
414 415 1.032114 CAAAATCGTCTGGGGAGGGC 61.032 60.000 0.00 0.00 0.00 5.19
415 416 2.211468 AAAATCGTCTGGGGAGGGCC 62.211 60.000 0.00 0.00 0.00 5.80
420 421 2.935481 TCTGGGGAGGGCCTGTTG 60.935 66.667 12.95 0.00 0.00 3.33
421 422 4.052518 CTGGGGAGGGCCTGTTGG 62.053 72.222 12.95 0.00 0.00 3.77
424 425 3.732849 GGGAGGGCCTGTTGGGAG 61.733 72.222 12.95 0.00 37.23 4.30
425 426 4.432741 GGAGGGCCTGTTGGGAGC 62.433 72.222 12.95 0.00 37.23 4.70
426 427 4.785453 GAGGGCCTGTTGGGAGCG 62.785 72.222 12.95 0.00 37.23 5.03
446 447 2.225792 GGCTGGAGATGCCCTAAGT 58.774 57.895 0.00 0.00 44.32 2.24
447 448 0.179034 GGCTGGAGATGCCCTAAGTG 60.179 60.000 0.00 0.00 44.32 3.16
448 449 0.543749 GCTGGAGATGCCCTAAGTGT 59.456 55.000 0.00 0.00 34.97 3.55
449 450 1.474143 GCTGGAGATGCCCTAAGTGTC 60.474 57.143 0.00 0.00 34.97 3.67
451 452 1.555075 TGGAGATGCCCTAAGTGTCAC 59.445 52.381 0.00 0.00 34.97 3.67
452 453 1.834263 GGAGATGCCCTAAGTGTCACT 59.166 52.381 0.00 0.00 0.00 3.41
453 454 2.419297 GGAGATGCCCTAAGTGTCACTG 60.419 54.545 6.18 0.00 0.00 3.66
454 455 1.065854 AGATGCCCTAAGTGTCACTGC 60.066 52.381 6.18 6.17 0.00 4.40
455 456 0.391661 ATGCCCTAAGTGTCACTGCG 60.392 55.000 6.18 0.52 0.00 5.18
456 457 2.391389 GCCCTAAGTGTCACTGCGC 61.391 63.158 6.18 0.00 0.00 6.09
458 459 0.320771 CCCTAAGTGTCACTGCGCTT 60.321 55.000 9.73 0.00 41.44 4.68
460 461 1.071605 CTAAGTGTCACTGCGCTTCC 58.928 55.000 9.73 0.00 39.56 3.46
462 463 0.882042 AAGTGTCACTGCGCTTCCTG 60.882 55.000 9.73 0.00 34.49 3.86
463 464 2.666190 TGTCACTGCGCTTCCTGC 60.666 61.111 9.73 0.00 38.57 4.85
465 466 2.037136 GTCACTGCGCTTCCTGCAT 61.037 57.895 9.73 0.00 42.32 3.96
466 467 1.742880 TCACTGCGCTTCCTGCATC 60.743 57.895 9.73 0.00 42.32 3.91
467 468 2.036571 CACTGCGCTTCCTGCATCA 61.037 57.895 9.73 0.00 42.32 3.07
470 471 1.302752 TGCGCTTCCTGCATCAAGT 60.303 52.632 9.73 0.00 43.06 3.16
472 473 1.303309 GCGCTTCCTGCATCAAGTAT 58.697 50.000 0.00 0.00 43.06 2.12
473 474 1.262683 GCGCTTCCTGCATCAAGTATC 59.737 52.381 0.00 0.00 43.06 2.24
475 476 2.286294 CGCTTCCTGCATCAAGTATCAC 59.714 50.000 6.64 0.00 43.06 3.06
476 477 3.539604 GCTTCCTGCATCAAGTATCACT 58.460 45.455 6.64 0.00 42.31 3.41
477 478 3.311871 GCTTCCTGCATCAAGTATCACTG 59.688 47.826 6.64 0.00 42.31 3.66
478 479 2.910199 TCCTGCATCAAGTATCACTGC 58.090 47.619 0.00 0.00 0.00 4.40
479 480 2.236893 TCCTGCATCAAGTATCACTGCA 59.763 45.455 0.00 0.00 40.29 4.41
480 481 2.353889 CCTGCATCAAGTATCACTGCAC 59.646 50.000 0.00 0.00 37.88 4.57
481 482 2.353889 CTGCATCAAGTATCACTGCACC 59.646 50.000 0.00 0.00 37.88 5.01
482 483 1.328680 GCATCAAGTATCACTGCACCG 59.671 52.381 0.00 0.00 33.13 4.94
485 486 3.165058 TCAAGTATCACTGCACCGATC 57.835 47.619 0.00 0.00 0.00 3.69
486 487 2.760650 TCAAGTATCACTGCACCGATCT 59.239 45.455 0.00 0.00 0.00 2.75
488 489 3.895232 AGTATCACTGCACCGATCTTT 57.105 42.857 0.00 0.00 0.00 2.52
489 490 5.105513 TCAAGTATCACTGCACCGATCTTTA 60.106 40.000 0.00 0.00 0.00 1.85
493 494 4.106029 TCACTGCACCGATCTTTACTAC 57.894 45.455 0.00 0.00 0.00 2.73
495 496 4.219944 TCACTGCACCGATCTTTACTACTT 59.780 41.667 0.00 0.00 0.00 2.24
496 497 4.563184 CACTGCACCGATCTTTACTACTTC 59.437 45.833 0.00 0.00 0.00 3.01
497 498 4.113354 CTGCACCGATCTTTACTACTTCC 58.887 47.826 0.00 0.00 0.00 3.46
498 499 3.767673 TGCACCGATCTTTACTACTTCCT 59.232 43.478 0.00 0.00 0.00 3.36
499 500 4.142227 TGCACCGATCTTTACTACTTCCTC 60.142 45.833 0.00 0.00 0.00 3.71
500 501 4.737055 GCACCGATCTTTACTACTTCCTCC 60.737 50.000 0.00 0.00 0.00 4.30
502 503 5.127356 CACCGATCTTTACTACTTCCTCCTT 59.873 44.000 0.00 0.00 0.00 3.36
503 504 5.720520 ACCGATCTTTACTACTTCCTCCTTT 59.279 40.000 0.00 0.00 0.00 3.11
504 505 6.127394 ACCGATCTTTACTACTTCCTCCTTTC 60.127 42.308 0.00 0.00 0.00 2.62
505 506 5.972382 CGATCTTTACTACTTCCTCCTTTCG 59.028 44.000 0.00 0.00 0.00 3.46
506 507 5.069501 TCTTTACTACTTCCTCCTTTCGC 57.930 43.478 0.00 0.00 0.00 4.70
507 508 4.525487 TCTTTACTACTTCCTCCTTTCGCA 59.475 41.667 0.00 0.00 0.00 5.10
508 509 4.877378 TTACTACTTCCTCCTTTCGCAA 57.123 40.909 0.00 0.00 0.00 4.85
509 510 3.764237 ACTACTTCCTCCTTTCGCAAA 57.236 42.857 0.00 0.00 0.00 3.68
510 511 3.400255 ACTACTTCCTCCTTTCGCAAAC 58.600 45.455 0.00 0.00 0.00 2.93
511 512 2.341846 ACTTCCTCCTTTCGCAAACA 57.658 45.000 0.00 0.00 0.00 2.83
513 514 2.222027 CTTCCTCCTTTCGCAAACACT 58.778 47.619 0.00 0.00 0.00 3.55
514 515 1.878953 TCCTCCTTTCGCAAACACTC 58.121 50.000 0.00 0.00 0.00 3.51
515 516 1.140052 TCCTCCTTTCGCAAACACTCA 59.860 47.619 0.00 0.00 0.00 3.41
516 517 2.154462 CCTCCTTTCGCAAACACTCAT 58.846 47.619 0.00 0.00 0.00 2.90
517 518 2.554032 CCTCCTTTCGCAAACACTCATT 59.446 45.455 0.00 0.00 0.00 2.57
518 519 3.004734 CCTCCTTTCGCAAACACTCATTT 59.995 43.478 0.00 0.00 0.00 2.32
519 520 4.499696 CCTCCTTTCGCAAACACTCATTTT 60.500 41.667 0.00 0.00 0.00 1.82
521 522 4.803088 TCCTTTCGCAAACACTCATTTTTG 59.197 37.500 0.00 0.00 36.06 2.44
522 523 4.566360 CCTTTCGCAAACACTCATTTTTGT 59.434 37.500 0.00 0.00 35.51 2.83
523 524 5.746245 CCTTTCGCAAACACTCATTTTTGTA 59.254 36.000 0.00 0.00 35.51 2.41
525 526 7.042791 CCTTTCGCAAACACTCATTTTTGTAAT 60.043 33.333 0.00 0.00 35.51 1.89
526 527 7.763172 TTCGCAAACACTCATTTTTGTAATT 57.237 28.000 0.00 0.00 35.51 1.40
527 528 7.388290 TCGCAAACACTCATTTTTGTAATTC 57.612 32.000 0.00 0.00 35.51 2.17
528 529 6.975197 TCGCAAACACTCATTTTTGTAATTCA 59.025 30.769 0.00 0.00 35.51 2.57
530 531 7.167302 CGCAAACACTCATTTTTGTAATTCAGA 59.833 33.333 0.00 0.00 35.51 3.27
531 532 8.981647 GCAAACACTCATTTTTGTAATTCAGAT 58.018 29.630 0.00 0.00 35.51 2.90
542 543 8.628630 TTTTGTAATTCAGATGTATGTCCACA 57.371 30.769 0.00 0.00 0.00 4.17
544 545 6.706295 TGTAATTCAGATGTATGTCCACACA 58.294 36.000 0.00 0.00 36.78 3.72
545 546 7.337938 TGTAATTCAGATGTATGTCCACACAT 58.662 34.615 0.00 0.00 45.73 3.21
547 548 6.932356 ATTCAGATGTATGTCCACACATTC 57.068 37.500 0.00 0.00 40.66 2.67
548 549 5.682234 TCAGATGTATGTCCACACATTCT 57.318 39.130 0.00 0.00 40.66 2.40
551 552 6.381133 TCAGATGTATGTCCACACATTCTAGT 59.619 38.462 0.00 0.00 40.66 2.57
564 565 6.363577 CACATTCTAGTGTGTTTGTTCACT 57.636 37.500 5.52 0.00 43.43 3.41
565 566 6.422223 CACATTCTAGTGTGTTTGTTCACTC 58.578 40.000 5.52 0.00 43.43 3.51
567 568 4.380841 TCTAGTGTGTTTGTTCACTCGT 57.619 40.909 1.08 0.00 42.77 4.18
568 569 4.751060 TCTAGTGTGTTTGTTCACTCGTT 58.249 39.130 1.08 0.00 42.77 3.85
569 570 5.172934 TCTAGTGTGTTTGTTCACTCGTTT 58.827 37.500 1.08 0.00 42.77 3.60
570 571 4.078363 AGTGTGTTTGTTCACTCGTTTG 57.922 40.909 0.00 0.00 40.28 2.93
583 584 2.947852 CTCGTTTGAGTCTGGATTCGT 58.052 47.619 0.00 0.00 37.46 3.85
584 585 2.663602 CTCGTTTGAGTCTGGATTCGTG 59.336 50.000 0.00 0.00 37.46 4.35
585 586 1.126846 CGTTTGAGTCTGGATTCGTGC 59.873 52.381 0.00 0.00 0.00 5.34
586 587 2.417719 GTTTGAGTCTGGATTCGTGCT 58.582 47.619 0.00 0.00 0.00 4.40
587 588 2.084610 TTGAGTCTGGATTCGTGCTG 57.915 50.000 0.00 0.00 0.00 4.41
590 591 2.760650 TGAGTCTGGATTCGTGCTGTAT 59.239 45.455 0.00 0.00 0.00 2.29
592 593 4.184629 GAGTCTGGATTCGTGCTGTATTT 58.815 43.478 0.00 0.00 0.00 1.40
593 594 5.105513 TGAGTCTGGATTCGTGCTGTATTTA 60.106 40.000 0.00 0.00 0.00 1.40
594 595 5.918608 AGTCTGGATTCGTGCTGTATTTAT 58.081 37.500 0.00 0.00 0.00 1.40
595 596 5.986135 AGTCTGGATTCGTGCTGTATTTATC 59.014 40.000 0.00 0.00 0.00 1.75
596 597 5.753438 GTCTGGATTCGTGCTGTATTTATCA 59.247 40.000 0.00 0.00 0.00 2.15
598 599 6.646653 TCTGGATTCGTGCTGTATTTATCATC 59.353 38.462 0.00 0.00 0.00 2.92
600 601 6.992123 TGGATTCGTGCTGTATTTATCATCTT 59.008 34.615 0.00 0.00 0.00 2.40
602 603 6.844696 TTCGTGCTGTATTTATCATCTTCC 57.155 37.500 0.00 0.00 0.00 3.46
603 604 6.161855 TCGTGCTGTATTTATCATCTTCCT 57.838 37.500 0.00 0.00 0.00 3.36
604 605 7.284919 TCGTGCTGTATTTATCATCTTCCTA 57.715 36.000 0.00 0.00 0.00 2.94
606 607 7.014326 TCGTGCTGTATTTATCATCTTCCTACT 59.986 37.037 0.00 0.00 0.00 2.57
607 608 7.115520 CGTGCTGTATTTATCATCTTCCTACTG 59.884 40.741 0.00 0.00 0.00 2.74
608 609 8.144478 GTGCTGTATTTATCATCTTCCTACTGA 58.856 37.037 0.00 0.00 0.00 3.41
610 611 9.717942 GCTGTATTTATCATCTTCCTACTGATT 57.282 33.333 0.00 0.00 32.20 2.57
619 620 8.948631 TCATCTTCCTACTGATTTGACATTAC 57.051 34.615 0.00 0.00 0.00 1.89
620 621 8.539544 TCATCTTCCTACTGATTTGACATTACA 58.460 33.333 0.00 0.00 0.00 2.41
623 624 9.817809 TCTTCCTACTGATTTGACATTACATAC 57.182 33.333 0.00 0.00 0.00 2.39
624 625 8.642908 TTCCTACTGATTTGACATTACATACG 57.357 34.615 0.00 0.00 0.00 3.06
627 628 8.540492 CCTACTGATTTGACATTACATACGTTC 58.460 37.037 0.00 0.00 0.00 3.95
628 629 7.899178 ACTGATTTGACATTACATACGTTCA 57.101 32.000 0.00 0.00 0.00 3.18
629 630 8.317891 ACTGATTTGACATTACATACGTTCAA 57.682 30.769 0.00 0.00 0.00 2.69
630 631 8.227791 ACTGATTTGACATTACATACGTTCAAC 58.772 33.333 0.00 0.00 0.00 3.18
632 633 6.766452 TTTGACATTACATACGTTCAACGA 57.234 33.333 18.84 0.16 46.05 3.85
633 634 6.766452 TTGACATTACATACGTTCAACGAA 57.234 33.333 18.84 0.00 46.05 3.85
634 635 6.766452 TGACATTACATACGTTCAACGAAA 57.234 33.333 18.84 4.42 46.05 3.46
635 636 7.175073 TGACATTACATACGTTCAACGAAAA 57.825 32.000 18.84 1.60 46.05 2.29
659 660 5.432885 AAAAAGACATGGAATTCGTCGTT 57.567 34.783 0.00 3.69 33.67 3.85
661 662 4.663636 AAGACATGGAATTCGTCGTTTC 57.336 40.909 0.00 0.00 34.80 2.78
662 663 3.000727 AGACATGGAATTCGTCGTTTCC 58.999 45.455 17.37 17.37 41.51 3.13
664 665 3.408634 ACATGGAATTCGTCGTTTCCTT 58.591 40.909 21.75 16.13 41.65 3.36
665 666 4.571919 ACATGGAATTCGTCGTTTCCTTA 58.428 39.130 21.75 9.98 41.65 2.69
666 667 4.390909 ACATGGAATTCGTCGTTTCCTTAC 59.609 41.667 21.75 5.22 41.65 2.34
667 668 2.988493 TGGAATTCGTCGTTTCCTTACG 59.012 45.455 21.75 0.00 41.65 3.18
677 678 5.171147 TCGTTTCCTTACGAAATTTTGCA 57.829 34.783 5.27 0.00 46.50 4.08
678 679 5.764131 TCGTTTCCTTACGAAATTTTGCAT 58.236 33.333 5.27 0.00 46.50 3.96
679 680 5.627367 TCGTTTCCTTACGAAATTTTGCATG 59.373 36.000 5.27 0.00 46.50 4.06
680 681 5.608146 GTTTCCTTACGAAATTTTGCATGC 58.392 37.500 11.82 11.82 42.38 4.06
683 684 5.477510 TCCTTACGAAATTTTGCATGCAAT 58.522 33.333 32.27 18.57 35.70 3.56
684 685 5.576384 TCCTTACGAAATTTTGCATGCAATC 59.424 36.000 32.27 24.25 35.70 2.67
686 687 6.036300 CCTTACGAAATTTTGCATGCAATCAT 59.964 34.615 32.27 23.35 35.70 2.45
687 688 5.866335 ACGAAATTTTGCATGCAATCATT 57.134 30.435 32.27 26.99 35.70 2.57
688 689 6.243811 ACGAAATTTTGCATGCAATCATTT 57.756 29.167 31.77 31.77 34.57 2.32
689 690 6.670233 ACGAAATTTTGCATGCAATCATTTT 58.330 28.000 31.77 26.51 33.27 1.82
691 692 6.022871 CGAAATTTTGCATGCAATCATTTTCG 60.023 34.615 34.34 34.34 37.14 3.46
692 693 6.483385 AATTTTGCATGCAATCATTTTCGA 57.517 29.167 32.27 12.53 35.70 3.71
694 695 2.532235 TGCATGCAATCATTTTCGAGC 58.468 42.857 20.30 0.00 0.00 5.03
696 697 2.534349 GCATGCAATCATTTTCGAGCAG 59.466 45.455 14.21 0.00 35.26 4.24
697 698 2.267188 TGCAATCATTTTCGAGCAGC 57.733 45.000 0.00 0.00 0.00 5.25
700 701 3.184541 GCAATCATTTTCGAGCAGCAAT 58.815 40.909 0.00 0.00 0.00 3.56
701 702 3.615496 GCAATCATTTTCGAGCAGCAATT 59.385 39.130 0.00 0.00 0.00 2.32
702 703 4.259690 GCAATCATTTTCGAGCAGCAATTC 60.260 41.667 0.00 0.00 0.00 2.17
703 704 4.707030 ATCATTTTCGAGCAGCAATTCA 57.293 36.364 0.00 0.00 0.00 2.57
704 705 4.087510 TCATTTTCGAGCAGCAATTCAG 57.912 40.909 0.00 0.00 0.00 3.02
705 706 3.503363 TCATTTTCGAGCAGCAATTCAGT 59.497 39.130 0.00 0.00 0.00 3.41
707 708 1.882912 TTCGAGCAGCAATTCAGTGT 58.117 45.000 0.00 0.00 0.00 3.55
711 712 3.812609 TCGAGCAGCAATTCAGTGTAAAA 59.187 39.130 0.00 0.00 0.00 1.52
713 714 3.888934 AGCAGCAATTCAGTGTAAAACG 58.111 40.909 0.00 0.00 0.00 3.60
714 715 3.315191 AGCAGCAATTCAGTGTAAAACGT 59.685 39.130 0.00 0.00 0.00 3.99
715 716 3.421888 GCAGCAATTCAGTGTAAAACGTG 59.578 43.478 0.00 0.00 0.00 4.49
716 717 3.974401 CAGCAATTCAGTGTAAAACGTGG 59.026 43.478 0.00 0.00 0.00 4.94
717 718 2.724174 GCAATTCAGTGTAAAACGTGGC 59.276 45.455 0.00 0.00 0.00 5.01
718 719 3.793801 GCAATTCAGTGTAAAACGTGGCA 60.794 43.478 0.00 0.00 0.00 4.92
719 720 3.896648 ATTCAGTGTAAAACGTGGCAG 57.103 42.857 0.00 0.00 0.00 4.85
720 721 0.941542 TCAGTGTAAAACGTGGCAGC 59.058 50.000 0.00 0.00 0.00 5.25
721 722 0.660488 CAGTGTAAAACGTGGCAGCA 59.340 50.000 0.00 0.00 0.00 4.41
722 723 0.944386 AGTGTAAAACGTGGCAGCAG 59.056 50.000 0.00 0.00 0.00 4.24
724 725 0.941542 TGTAAAACGTGGCAGCAGAC 59.058 50.000 0.00 0.00 0.00 3.51
725 726 0.941542 GTAAAACGTGGCAGCAGACA 59.058 50.000 0.00 0.00 0.00 3.41
727 728 0.311790 AAAACGTGGCAGCAGACATG 59.688 50.000 2.00 2.00 45.72 3.21
729 730 1.230635 AACGTGGCAGCAGACATGAC 61.231 55.000 11.68 0.00 42.75 3.06
730 731 2.393768 CGTGGCAGCAGACATGACC 61.394 63.158 0.00 0.00 42.75 4.02
733 734 0.178995 TGGCAGCAGACATGACCAAA 60.179 50.000 0.00 0.00 0.00 3.28
734 735 0.961019 GGCAGCAGACATGACCAAAA 59.039 50.000 0.00 0.00 0.00 2.44
735 736 1.068055 GGCAGCAGACATGACCAAAAG 60.068 52.381 0.00 0.00 0.00 2.27
746 747 1.208293 TGACCAAAAGCAACCAAACCC 59.792 47.619 0.00 0.00 0.00 4.11
775 3621 6.181255 CGAAAACGAAATGAGCTTCTAGATG 58.819 40.000 0.00 0.00 0.00 2.90
811 3657 2.109799 CGGCTGGATGGAAGCGAT 59.890 61.111 0.00 0.00 41.78 4.58
814 3660 2.550101 GCTGGATGGAAGCGATGGC 61.550 63.158 0.00 0.00 40.37 4.40
842 3691 5.221303 TGCTGAAAATTCTTCTTGTCCCTTG 60.221 40.000 0.00 0.00 0.00 3.61
858 3707 0.322277 CTTGCTCCACCTCACTGCAT 60.322 55.000 0.00 0.00 33.50 3.96
861 3710 1.251251 GCTCCACCTCACTGCATTTT 58.749 50.000 0.00 0.00 0.00 1.82
882 3739 0.682209 TTTCTCTCCTACCCGTCCCG 60.682 60.000 0.00 0.00 0.00 5.14
940 3806 0.742990 TCGCCGCCATTACTTCCAAG 60.743 55.000 0.00 0.00 0.00 3.61
962 3832 4.373116 AGCTACGCCACCACACCG 62.373 66.667 0.00 0.00 0.00 4.94
989 3866 2.202919 TCGCATCCACATCGCCAG 60.203 61.111 0.00 0.00 0.00 4.85
992 3869 3.104766 CATCCACATCGCCAGCAC 58.895 61.111 0.00 0.00 0.00 4.40
1023 3900 2.865119 TCCATCATCCATTCATCGGG 57.135 50.000 0.00 0.00 0.00 5.14
1037 3914 3.926616 TCATCGGGTTCACTTCTTTCTC 58.073 45.455 0.00 0.00 0.00 2.87
1040 3917 2.698797 TCGGGTTCACTTCTTTCTCAGT 59.301 45.455 0.00 0.00 0.00 3.41
1070 3947 2.492012 CATGGATGTAGAAGGAGCAGC 58.508 52.381 0.00 0.00 0.00 5.25
1071 3948 1.571955 TGGATGTAGAAGGAGCAGCA 58.428 50.000 0.00 0.00 0.00 4.41
1072 3949 1.483827 TGGATGTAGAAGGAGCAGCAG 59.516 52.381 0.00 0.00 0.00 4.24
1073 3950 1.202627 GGATGTAGAAGGAGCAGCAGG 60.203 57.143 0.00 0.00 0.00 4.85
1173 4059 3.928992 TCACACCTTACTACTACTCGTCG 59.071 47.826 0.00 0.00 0.00 5.12
1174 4060 3.681897 CACACCTTACTACTACTCGTCGT 59.318 47.826 0.00 0.00 0.00 4.34
1175 4061 3.929610 ACACCTTACTACTACTCGTCGTC 59.070 47.826 0.00 0.00 0.00 4.20
1176 4062 4.180057 CACCTTACTACTACTCGTCGTCT 58.820 47.826 0.00 0.00 0.00 4.18
1177 4063 4.629200 CACCTTACTACTACTCGTCGTCTT 59.371 45.833 0.00 0.00 0.00 3.01
1178 4064 4.867608 ACCTTACTACTACTCGTCGTCTTC 59.132 45.833 0.00 0.00 0.00 2.87
1179 4065 4.867047 CCTTACTACTACTCGTCGTCTTCA 59.133 45.833 0.00 0.00 0.00 3.02
1530 4425 1.225376 CGGCGTTCAGGTACAGCAAA 61.225 55.000 0.00 0.00 0.00 3.68
1590 4500 1.612442 CGAGTTCCAGGAGGGGGAA 60.612 63.158 0.00 0.00 41.98 3.97
1658 4568 1.532604 ATCGACACTTGGCTCCACGA 61.533 55.000 0.00 0.63 0.00 4.35
1723 4642 1.007387 GGCAAACAAGCTCCGTTGG 60.007 57.895 2.48 1.18 34.17 3.77
1772 4691 2.439156 GGTCATCCAGGTGCAGGC 60.439 66.667 0.00 0.00 0.00 4.85
1773 4692 2.673523 GTCATCCAGGTGCAGGCT 59.326 61.111 0.00 0.00 0.00 4.58
1801 4723 4.305769 CACAGGAGAAGAAGAAGACACAG 58.694 47.826 0.00 0.00 0.00 3.66
1808 4730 3.085443 AGAAGAAGACACAGTGACACG 57.915 47.619 7.81 0.00 0.00 4.49
1916 4838 7.334421 AGCACATTGTAGTAGGTAGTGATTTTG 59.666 37.037 0.00 0.00 0.00 2.44
1932 4854 6.040842 AGTGATTTTGGTTAGTTGCATCACTT 59.959 34.615 6.15 0.00 44.39 3.16
1987 5110 4.712476 AGAACTTCAGAACAACATGAGCT 58.288 39.130 0.00 0.00 0.00 4.09
2150 5285 1.668826 TAAGCTGAGGGTGGTGGAAT 58.331 50.000 0.00 0.00 0.00 3.01
2180 5317 3.626217 ACCAAGAAACTGAAACTTCGGAC 59.374 43.478 5.28 0.00 37.03 4.79
2184 5321 1.878953 AACTGAAACTTCGGACGCAT 58.121 45.000 5.28 0.00 37.03 4.73
2206 5343 5.596836 TGCCAAAGAAGAACATGAAGTTT 57.403 34.783 0.00 0.00 41.51 2.66
2262 5402 3.577848 AGCTCACTGTGATATCCTGATCC 59.422 47.826 11.45 0.00 0.00 3.36
2316 5456 7.504238 ACCTTATTAAGACACCAACAAATGTCA 59.496 33.333 4.96 0.00 46.34 3.58
2363 5504 2.673523 CCCAGGGGCTTCTCACTG 59.326 66.667 0.00 0.00 0.00 3.66
2488 5642 7.890127 TCAACCAAGTTCCTATTCTTCATCATT 59.110 33.333 0.00 0.00 0.00 2.57
2491 5645 6.460676 CCAAGTTCCTATTCTTCATCATTGCC 60.461 42.308 0.00 0.00 0.00 4.52
2564 5744 1.381327 AGGCTACCTCCTGCGCTAA 60.381 57.895 9.73 0.00 34.56 3.09
2573 5753 2.032178 CCTCCTGCGCTAAATTTACAGC 59.968 50.000 9.73 11.29 0.00 4.40
2667 5847 5.488341 AGTTCCTAATTACTGTTGTGCGAT 58.512 37.500 0.00 0.00 0.00 4.58
2671 5851 6.837992 TCCTAATTACTGTTGTGCGATTTTC 58.162 36.000 0.00 0.00 0.00 2.29
2716 5896 1.597854 CTGAGGTTCAGGCAACGCA 60.598 57.895 0.00 0.00 40.71 5.24
2893 6077 7.994194 AGCTGCATTTAAAAAGAAGAGGATAG 58.006 34.615 1.02 0.00 0.00 2.08
2934 6118 6.868339 AGTCAAAAGGCATAACAAATTACTGC 59.132 34.615 0.00 0.00 0.00 4.40
2935 6119 6.090763 GTCAAAAGGCATAACAAATTACTGCC 59.909 38.462 3.72 3.72 41.02 4.85
2936 6120 5.736951 AAAGGCATAACAAATTACTGCCA 57.263 34.783 13.75 0.00 42.01 4.92
2937 6121 5.937975 AAGGCATAACAAATTACTGCCAT 57.062 34.783 13.75 0.00 42.01 4.40
2938 6122 5.937975 AGGCATAACAAATTACTGCCATT 57.062 34.783 13.75 0.00 42.01 3.16
2939 6123 7.416964 AAGGCATAACAAATTACTGCCATTA 57.583 32.000 13.75 0.00 42.01 1.90
2940 6124 7.042797 AGGCATAACAAATTACTGCCATTAG 57.957 36.000 13.75 0.00 42.01 1.73
2962 6146 3.689649 GTCATTACAGGGAAGCATCGTTT 59.310 43.478 0.00 0.00 0.00 3.60
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.585791 GAAGCAGAGGAAGCCGAGGG 62.586 65.000 0.00 0.00 0.00 4.30
44 45 1.153469 GAAGCAGAGGAAGCCGAGG 60.153 63.158 0.00 0.00 0.00 4.63
45 46 0.177604 ATGAAGCAGAGGAAGCCGAG 59.822 55.000 0.00 0.00 0.00 4.63
46 47 0.176680 GATGAAGCAGAGGAAGCCGA 59.823 55.000 0.00 0.00 0.00 5.54
47 48 0.107993 TGATGAAGCAGAGGAAGCCG 60.108 55.000 0.00 0.00 0.00 5.52
49 50 1.005340 CGTGATGAAGCAGAGGAAGC 58.995 55.000 0.00 0.00 0.00 3.86
50 51 1.066573 ACCGTGATGAAGCAGAGGAAG 60.067 52.381 0.00 0.00 0.00 3.46
51 52 0.976641 ACCGTGATGAAGCAGAGGAA 59.023 50.000 0.00 0.00 0.00 3.36
52 53 0.247460 CACCGTGATGAAGCAGAGGA 59.753 55.000 0.00 0.00 0.00 3.71
53 54 1.364626 GCACCGTGATGAAGCAGAGG 61.365 60.000 1.65 0.00 0.00 3.69
54 55 1.364626 GGCACCGTGATGAAGCAGAG 61.365 60.000 1.65 0.00 0.00 3.35
55 56 1.375908 GGCACCGTGATGAAGCAGA 60.376 57.895 1.65 0.00 0.00 4.26
56 57 1.642037 CTGGCACCGTGATGAAGCAG 61.642 60.000 1.65 0.00 0.00 4.24
57 58 1.672030 CTGGCACCGTGATGAAGCA 60.672 57.895 1.65 0.00 0.00 3.91
58 59 1.639298 GACTGGCACCGTGATGAAGC 61.639 60.000 1.65 0.00 0.00 3.86
59 60 1.354337 CGACTGGCACCGTGATGAAG 61.354 60.000 1.65 0.00 0.00 3.02
60 61 1.374125 CGACTGGCACCGTGATGAA 60.374 57.895 1.65 0.00 0.00 2.57
61 62 2.261361 CGACTGGCACCGTGATGA 59.739 61.111 1.65 0.00 0.00 2.92
62 63 3.490759 GCGACTGGCACCGTGATG 61.491 66.667 1.65 0.00 42.87 3.07
98 99 3.197790 CTTCCAGTCGCCGCCATG 61.198 66.667 0.00 0.00 0.00 3.66
99 100 4.473520 CCTTCCAGTCGCCGCCAT 62.474 66.667 0.00 0.00 0.00 4.40
118 119 4.426313 CCAAACCCCCTCCCGCTC 62.426 72.222 0.00 0.00 0.00 5.03
124 125 4.426313 CTCCCGCCAAACCCCCTC 62.426 72.222 0.00 0.00 0.00 4.30
125 126 4.995058 TCTCCCGCCAAACCCCCT 62.995 66.667 0.00 0.00 0.00 4.79
126 127 3.516949 TTTCTCCCGCCAAACCCCC 62.517 63.158 0.00 0.00 0.00 5.40
127 128 1.977009 CTTTCTCCCGCCAAACCCC 60.977 63.158 0.00 0.00 0.00 4.95
129 130 1.977009 CCCTTTCTCCCGCCAAACC 60.977 63.158 0.00 0.00 0.00 3.27
130 131 0.960861 CTCCCTTTCTCCCGCCAAAC 60.961 60.000 0.00 0.00 0.00 2.93
131 132 1.378762 CTCCCTTTCTCCCGCCAAA 59.621 57.895 0.00 0.00 0.00 3.28
132 133 2.602676 CCTCCCTTTCTCCCGCCAA 61.603 63.158 0.00 0.00 0.00 4.52
133 134 3.009115 CCTCCCTTTCTCCCGCCA 61.009 66.667 0.00 0.00 0.00 5.69
134 135 3.798511 CCCTCCCTTTCTCCCGCC 61.799 72.222 0.00 0.00 0.00 6.13
135 136 1.636769 ATTCCCTCCCTTTCTCCCGC 61.637 60.000 0.00 0.00 0.00 6.13
136 137 0.181350 CATTCCCTCCCTTTCTCCCG 59.819 60.000 0.00 0.00 0.00 5.14
138 139 0.106469 GCCATTCCCTCCCTTTCTCC 60.106 60.000 0.00 0.00 0.00 3.71
139 140 0.464554 CGCCATTCCCTCCCTTTCTC 60.465 60.000 0.00 0.00 0.00 2.87
140 141 1.609783 CGCCATTCCCTCCCTTTCT 59.390 57.895 0.00 0.00 0.00 2.52
142 143 2.683475 CCGCCATTCCCTCCCTTT 59.317 61.111 0.00 0.00 0.00 3.11
143 144 3.420482 CCCGCCATTCCCTCCCTT 61.420 66.667 0.00 0.00 0.00 3.95
146 147 1.921869 TTTCTCCCGCCATTCCCTCC 61.922 60.000 0.00 0.00 0.00 4.30
147 148 0.464554 CTTTCTCCCGCCATTCCCTC 60.465 60.000 0.00 0.00 0.00 4.30
149 150 1.453928 CCTTTCTCCCGCCATTCCC 60.454 63.158 0.00 0.00 0.00 3.97
150 151 2.121538 GCCTTTCTCCCGCCATTCC 61.122 63.158 0.00 0.00 0.00 3.01
151 152 2.472909 CGCCTTTCTCCCGCCATTC 61.473 63.158 0.00 0.00 0.00 2.67
152 153 2.438434 CGCCTTTCTCCCGCCATT 60.438 61.111 0.00 0.00 0.00 3.16
153 154 3.391665 CTCGCCTTTCTCCCGCCAT 62.392 63.158 0.00 0.00 0.00 4.40
154 155 4.082523 CTCGCCTTTCTCCCGCCA 62.083 66.667 0.00 0.00 0.00 5.69
157 158 4.129737 TCGCTCGCCTTTCTCCCG 62.130 66.667 0.00 0.00 0.00 5.14
158 159 2.202810 CTCGCTCGCCTTTCTCCC 60.203 66.667 0.00 0.00 0.00 4.30
159 160 2.888051 GCTCGCTCGCCTTTCTCC 60.888 66.667 0.00 0.00 0.00 3.71
160 161 3.251043 CGCTCGCTCGCCTTTCTC 61.251 66.667 0.00 0.00 0.00 2.87
168 169 3.283684 ATCTCTCCCGCTCGCTCG 61.284 66.667 0.00 0.00 0.00 5.03
169 170 2.334653 CATCTCTCCCGCTCGCTC 59.665 66.667 0.00 0.00 0.00 5.03
170 171 3.910490 GCATCTCTCCCGCTCGCT 61.910 66.667 0.00 0.00 0.00 4.93
172 173 3.534970 CTCGCATCTCTCCCGCTCG 62.535 68.421 0.00 0.00 0.00 5.03
173 174 2.334653 CTCGCATCTCTCCCGCTC 59.665 66.667 0.00 0.00 0.00 5.03
175 176 4.292178 CCCTCGCATCTCTCCCGC 62.292 72.222 0.00 0.00 0.00 6.13
176 177 1.676678 TTTCCCTCGCATCTCTCCCG 61.677 60.000 0.00 0.00 0.00 5.14
179 180 1.294857 GCTTTTCCCTCGCATCTCTC 58.705 55.000 0.00 0.00 0.00 3.20
180 181 0.460987 CGCTTTTCCCTCGCATCTCT 60.461 55.000 0.00 0.00 0.00 3.10
181 182 0.741221 ACGCTTTTCCCTCGCATCTC 60.741 55.000 0.00 0.00 0.00 2.75
182 183 0.741221 GACGCTTTTCCCTCGCATCT 60.741 55.000 0.00 0.00 0.00 2.90
184 185 0.605319 TTGACGCTTTTCCCTCGCAT 60.605 50.000 0.00 0.00 0.00 4.73
185 186 0.816018 TTTGACGCTTTTCCCTCGCA 60.816 50.000 0.00 0.00 0.00 5.10
203 204 1.068417 GCCTTTTCCCGCCGTTTTT 59.932 52.632 0.00 0.00 0.00 1.94
204 205 2.732016 GCCTTTTCCCGCCGTTTT 59.268 55.556 0.00 0.00 0.00 2.43
205 206 3.299977 GGCCTTTTCCCGCCGTTT 61.300 61.111 0.00 0.00 34.94 3.60
212 213 3.640257 GACCCGAGGGCCTTTTCCC 62.640 68.421 7.89 0.00 46.93 3.97
215 216 4.717313 GCGACCCGAGGGCCTTTT 62.717 66.667 7.89 0.00 39.32 2.27
242 243 3.263503 GAAAAAGGCGCGTGGGTCC 62.264 63.158 8.43 0.00 0.00 4.46
243 244 2.254350 GAAAAAGGCGCGTGGGTC 59.746 61.111 8.43 0.00 0.00 4.46
244 245 3.656045 CGAAAAAGGCGCGTGGGT 61.656 61.111 8.43 0.00 0.00 4.51
261 262 4.666253 TGGGGAGCCAGCACAAGC 62.666 66.667 0.00 0.00 42.56 4.01
263 264 2.115910 CTTGGGGAGCCAGCACAA 59.884 61.111 0.00 0.00 0.00 3.33
264 265 4.666253 GCTTGGGGAGCCAGCACA 62.666 66.667 0.00 0.00 46.01 4.57
311 312 4.572571 AAAACTGGTGCCGGCGGA 62.573 61.111 33.44 12.50 0.00 5.54
313 314 4.341502 CCAAAACTGGTGCCGGCG 62.342 66.667 23.90 10.06 0.00 6.46
318 319 1.662044 CTCAGGCCAAAACTGGTGC 59.338 57.895 5.01 0.00 36.62 5.01
319 320 1.662044 GCTCAGGCCAAAACTGGTG 59.338 57.895 5.01 0.00 36.62 4.17
320 321 4.181051 GCTCAGGCCAAAACTGGT 57.819 55.556 5.01 0.00 36.62 4.00
331 332 2.561373 GTTTTTCGCCGGCTCAGG 59.439 61.111 26.68 9.07 0.00 3.86
332 333 2.173382 CGTTTTTCGCCGGCTCAG 59.827 61.111 26.68 9.50 0.00 3.35
333 334 3.350612 CCGTTTTTCGCCGGCTCA 61.351 61.111 26.68 8.05 37.43 4.26
338 339 2.127003 GAAGCCCGTTTTTCGCCG 60.127 61.111 0.00 0.00 38.35 6.46
339 340 1.081442 CAGAAGCCCGTTTTTCGCC 60.081 57.895 0.00 0.00 38.35 5.54
340 341 1.081442 CCAGAAGCCCGTTTTTCGC 60.081 57.895 0.00 0.00 38.35 4.70
341 342 1.579429 CCCAGAAGCCCGTTTTTCG 59.421 57.895 0.00 0.00 39.52 3.46
342 343 1.532604 CCCCCAGAAGCCCGTTTTTC 61.533 60.000 0.00 0.00 0.00 2.29
344 345 2.117423 CCCCCAGAAGCCCGTTTT 59.883 61.111 0.00 0.00 0.00 2.43
345 346 4.678743 GCCCCCAGAAGCCCGTTT 62.679 66.667 0.00 0.00 0.00 3.60
352 353 2.046892 CAGTCACGCCCCCAGAAG 60.047 66.667 0.00 0.00 0.00 2.85
353 354 3.636231 CCAGTCACGCCCCCAGAA 61.636 66.667 0.00 0.00 0.00 3.02
354 355 4.631740 TCCAGTCACGCCCCCAGA 62.632 66.667 0.00 0.00 0.00 3.86
355 356 4.394712 GTCCAGTCACGCCCCCAG 62.395 72.222 0.00 0.00 0.00 4.45
357 358 4.394712 CAGTCCAGTCACGCCCCC 62.395 72.222 0.00 0.00 0.00 5.40
358 359 2.676163 AAACAGTCCAGTCACGCCCC 62.676 60.000 0.00 0.00 0.00 5.80
359 360 0.818040 AAAACAGTCCAGTCACGCCC 60.818 55.000 0.00 0.00 0.00 6.13
386 387 4.101790 ACGATTTTGCCGCGCTGG 62.102 61.111 5.56 10.08 42.50 4.85
387 388 2.574212 GACGATTTTGCCGCGCTG 60.574 61.111 5.56 0.00 0.00 5.18
389 390 2.574212 CAGACGATTTTGCCGCGC 60.574 61.111 0.00 0.00 0.00 6.86
390 391 2.098298 CCAGACGATTTTGCCGCG 59.902 61.111 0.00 0.00 0.00 6.46
391 392 2.485122 CCCAGACGATTTTGCCGC 59.515 61.111 0.00 0.00 0.00 6.53
392 393 1.369091 CTCCCCAGACGATTTTGCCG 61.369 60.000 0.00 0.00 0.00 5.69
393 394 1.032114 CCTCCCCAGACGATTTTGCC 61.032 60.000 0.00 0.00 0.00 4.52
394 395 1.032114 CCCTCCCCAGACGATTTTGC 61.032 60.000 0.00 0.00 0.00 3.68
395 396 1.032114 GCCCTCCCCAGACGATTTTG 61.032 60.000 0.00 0.00 0.00 2.44
397 398 2.680370 GGCCCTCCCCAGACGATTT 61.680 63.158 0.00 0.00 0.00 2.17
398 399 3.090532 GGCCCTCCCCAGACGATT 61.091 66.667 0.00 0.00 0.00 3.34
399 400 4.095400 AGGCCCTCCCCAGACGAT 62.095 66.667 0.00 0.00 0.00 3.73
402 403 2.936032 AACAGGCCCTCCCCAGAC 60.936 66.667 0.00 0.00 0.00 3.51
403 404 2.935481 CAACAGGCCCTCCCCAGA 60.935 66.667 0.00 0.00 0.00 3.86
404 405 4.052518 CCAACAGGCCCTCCCCAG 62.053 72.222 0.00 0.00 0.00 4.45
407 408 3.732849 CTCCCAACAGGCCCTCCC 61.733 72.222 0.00 0.00 34.51 4.30
408 409 4.432741 GCTCCCAACAGGCCCTCC 62.433 72.222 0.00 0.00 34.51 4.30
409 410 4.785453 CGCTCCCAACAGGCCCTC 62.785 72.222 0.00 0.00 34.51 4.30
429 430 0.543749 ACACTTAGGGCATCTCCAGC 59.456 55.000 0.00 0.00 36.21 4.85
430 431 1.833630 TGACACTTAGGGCATCTCCAG 59.166 52.381 0.00 0.00 36.21 3.86
431 432 1.555075 GTGACACTTAGGGCATCTCCA 59.445 52.381 0.00 0.00 36.21 3.86
432 433 1.834263 AGTGACACTTAGGGCATCTCC 59.166 52.381 1.07 0.00 0.00 3.71
434 435 1.065854 GCAGTGACACTTAGGGCATCT 60.066 52.381 5.04 0.00 0.00 2.90
435 436 1.373570 GCAGTGACACTTAGGGCATC 58.626 55.000 5.04 0.00 0.00 3.91
436 437 0.391661 CGCAGTGACACTTAGGGCAT 60.392 55.000 5.04 0.00 0.00 4.40
437 438 1.005037 CGCAGTGACACTTAGGGCA 60.005 57.895 5.04 0.00 0.00 5.36
438 439 2.391389 GCGCAGTGACACTTAGGGC 61.391 63.158 15.96 15.96 0.00 5.19
439 440 0.320771 AAGCGCAGTGACACTTAGGG 60.321 55.000 11.47 5.52 0.00 3.53
440 441 1.071605 GAAGCGCAGTGACACTTAGG 58.928 55.000 11.47 0.00 0.00 2.69
441 442 1.071605 GGAAGCGCAGTGACACTTAG 58.928 55.000 11.47 4.03 0.00 2.18
442 443 0.679505 AGGAAGCGCAGTGACACTTA 59.320 50.000 11.47 0.00 0.00 2.24
443 444 0.882042 CAGGAAGCGCAGTGACACTT 60.882 55.000 11.47 0.00 0.00 3.16
444 445 1.301244 CAGGAAGCGCAGTGACACT 60.301 57.895 11.47 1.07 0.00 3.55
445 446 2.959357 GCAGGAAGCGCAGTGACAC 61.959 63.158 11.47 0.00 0.00 3.67
446 447 2.666190 GCAGGAAGCGCAGTGACA 60.666 61.111 11.47 0.00 0.00 3.58
455 456 3.311871 CAGTGATACTTGATGCAGGAAGC 59.688 47.826 7.28 0.00 45.96 3.86
456 457 3.311871 GCAGTGATACTTGATGCAGGAAG 59.688 47.826 0.00 6.05 36.88 3.46
458 459 2.236893 TGCAGTGATACTTGATGCAGGA 59.763 45.455 0.00 0.00 41.65 3.86
460 461 2.353889 GGTGCAGTGATACTTGATGCAG 59.646 50.000 0.00 0.00 46.63 4.41
462 463 1.328680 CGGTGCAGTGATACTTGATGC 59.671 52.381 0.00 0.00 37.40 3.91
463 464 2.892374 TCGGTGCAGTGATACTTGATG 58.108 47.619 0.00 0.00 0.00 3.07
465 466 2.760650 AGATCGGTGCAGTGATACTTGA 59.239 45.455 0.00 0.00 0.00 3.02
466 467 3.170791 AGATCGGTGCAGTGATACTTG 57.829 47.619 0.00 0.00 0.00 3.16
467 468 3.895232 AAGATCGGTGCAGTGATACTT 57.105 42.857 0.00 4.52 0.00 2.24
470 471 5.593095 AGTAGTAAAGATCGGTGCAGTGATA 59.407 40.000 0.00 0.00 0.00 2.15
472 473 3.762288 AGTAGTAAAGATCGGTGCAGTGA 59.238 43.478 0.00 0.00 0.00 3.41
473 474 4.111375 AGTAGTAAAGATCGGTGCAGTG 57.889 45.455 0.00 0.00 0.00 3.66
475 476 4.113354 GGAAGTAGTAAAGATCGGTGCAG 58.887 47.826 0.00 0.00 0.00 4.41
476 477 3.767673 AGGAAGTAGTAAAGATCGGTGCA 59.232 43.478 0.00 0.00 0.00 4.57
477 478 4.361420 GAGGAAGTAGTAAAGATCGGTGC 58.639 47.826 0.00 0.00 0.00 5.01
478 479 4.645588 AGGAGGAAGTAGTAAAGATCGGTG 59.354 45.833 0.00 0.00 0.00 4.94
479 480 4.869451 AGGAGGAAGTAGTAAAGATCGGT 58.131 43.478 0.00 0.00 0.00 4.69
480 481 5.855740 AAGGAGGAAGTAGTAAAGATCGG 57.144 43.478 0.00 0.00 0.00 4.18
481 482 5.972382 CGAAAGGAGGAAGTAGTAAAGATCG 59.028 44.000 0.00 0.00 0.00 3.69
482 483 5.749588 GCGAAAGGAGGAAGTAGTAAAGATC 59.250 44.000 0.00 0.00 0.00 2.75
485 486 4.817517 TGCGAAAGGAGGAAGTAGTAAAG 58.182 43.478 0.00 0.00 0.00 1.85
486 487 4.877378 TGCGAAAGGAGGAAGTAGTAAA 57.123 40.909 0.00 0.00 0.00 2.01
488 489 4.039488 TGTTTGCGAAAGGAGGAAGTAGTA 59.961 41.667 0.00 0.00 0.00 1.82
489 490 3.181458 TGTTTGCGAAAGGAGGAAGTAGT 60.181 43.478 0.00 0.00 0.00 2.73
493 494 2.222027 AGTGTTTGCGAAAGGAGGAAG 58.778 47.619 0.00 0.00 0.00 3.46
495 496 1.140052 TGAGTGTTTGCGAAAGGAGGA 59.860 47.619 0.00 0.00 0.00 3.71
496 497 1.593196 TGAGTGTTTGCGAAAGGAGG 58.407 50.000 0.00 0.00 0.00 4.30
497 498 3.904136 AATGAGTGTTTGCGAAAGGAG 57.096 42.857 0.00 0.00 0.00 3.69
498 499 4.647424 AAAATGAGTGTTTGCGAAAGGA 57.353 36.364 0.00 0.00 0.00 3.36
499 500 4.566360 ACAAAAATGAGTGTTTGCGAAAGG 59.434 37.500 0.00 0.00 38.10 3.11
500 501 5.701029 ACAAAAATGAGTGTTTGCGAAAG 57.299 34.783 0.00 0.00 38.10 2.62
502 503 7.489435 TGAATTACAAAAATGAGTGTTTGCGAA 59.511 29.630 0.00 0.00 38.10 4.70
503 504 6.975197 TGAATTACAAAAATGAGTGTTTGCGA 59.025 30.769 0.00 0.00 38.10 5.10
504 505 7.159437 TGAATTACAAAAATGAGTGTTTGCG 57.841 32.000 0.00 0.00 38.10 4.85
505 506 8.351495 TCTGAATTACAAAAATGAGTGTTTGC 57.649 30.769 0.00 0.00 38.10 3.68
516 517 9.072375 TGTGGACATACATCTGAATTACAAAAA 57.928 29.630 0.00 0.00 0.00 1.94
517 518 8.511321 GTGTGGACATACATCTGAATTACAAAA 58.489 33.333 0.00 0.00 32.43 2.44
518 519 7.663493 TGTGTGGACATACATCTGAATTACAAA 59.337 33.333 0.00 0.00 32.43 2.83
519 520 7.164803 TGTGTGGACATACATCTGAATTACAA 58.835 34.615 0.00 0.00 32.43 2.41
521 522 7.792374 ATGTGTGGACATACATCTGAATTAC 57.208 36.000 8.61 0.00 41.27 1.89
522 523 8.267183 AGAATGTGTGGACATACATCTGAATTA 58.733 33.333 13.80 0.00 42.30 1.40
523 524 7.114754 AGAATGTGTGGACATACATCTGAATT 58.885 34.615 13.80 0.21 42.30 2.17
525 526 6.053632 AGAATGTGTGGACATACATCTGAA 57.946 37.500 13.80 0.00 42.30 3.02
526 527 5.682234 AGAATGTGTGGACATACATCTGA 57.318 39.130 13.80 0.00 42.30 3.27
527 528 6.478016 CACTAGAATGTGTGGACATACATCTG 59.522 42.308 13.80 8.03 42.30 2.90
528 529 6.577103 CACTAGAATGTGTGGACATACATCT 58.423 40.000 13.80 13.78 42.30 2.90
542 543 5.234329 CGAGTGAACAAACACACTAGAATGT 59.766 40.000 0.00 0.00 45.54 2.71
544 545 5.357257 ACGAGTGAACAAACACACTAGAAT 58.643 37.500 12.56 0.00 45.54 2.40
545 546 4.751060 ACGAGTGAACAAACACACTAGAA 58.249 39.130 12.56 0.00 45.54 2.10
547 548 5.062934 TCAAACGAGTGAACAAACACACTAG 59.937 40.000 0.00 0.00 45.54 2.57
548 549 4.930405 TCAAACGAGTGAACAAACACACTA 59.070 37.500 0.00 0.00 45.54 2.74
551 552 3.749088 ACTCAAACGAGTGAACAAACACA 59.251 39.130 0.00 0.00 42.28 3.72
553 554 4.092821 CAGACTCAAACGAGTGAACAAACA 59.907 41.667 0.00 0.00 43.92 2.83
554 555 4.494199 CCAGACTCAAACGAGTGAACAAAC 60.494 45.833 0.00 0.00 43.92 2.93
556 557 3.118920 TCCAGACTCAAACGAGTGAACAA 60.119 43.478 0.00 0.00 43.92 2.83
557 558 2.429250 TCCAGACTCAAACGAGTGAACA 59.571 45.455 0.00 0.00 43.92 3.18
559 560 4.307432 GAATCCAGACTCAAACGAGTGAA 58.693 43.478 0.00 0.00 43.92 3.18
560 561 3.611766 CGAATCCAGACTCAAACGAGTGA 60.612 47.826 0.00 0.00 43.92 3.41
562 563 2.296471 ACGAATCCAGACTCAAACGAGT 59.704 45.455 0.00 0.00 46.60 4.18
563 564 2.663602 CACGAATCCAGACTCAAACGAG 59.336 50.000 0.00 0.00 36.53 4.18
564 565 2.672714 CACGAATCCAGACTCAAACGA 58.327 47.619 0.00 0.00 0.00 3.85
565 566 1.126846 GCACGAATCCAGACTCAAACG 59.873 52.381 0.00 0.00 0.00 3.60
567 568 2.224281 ACAGCACGAATCCAGACTCAAA 60.224 45.455 0.00 0.00 0.00 2.69
568 569 1.344438 ACAGCACGAATCCAGACTCAA 59.656 47.619 0.00 0.00 0.00 3.02
569 570 0.969149 ACAGCACGAATCCAGACTCA 59.031 50.000 0.00 0.00 0.00 3.41
570 571 2.941453 TACAGCACGAATCCAGACTC 57.059 50.000 0.00 0.00 0.00 3.36
572 573 5.753438 TGATAAATACAGCACGAATCCAGAC 59.247 40.000 0.00 0.00 0.00 3.51
573 574 5.912892 TGATAAATACAGCACGAATCCAGA 58.087 37.500 0.00 0.00 0.00 3.86
574 575 6.648310 AGATGATAAATACAGCACGAATCCAG 59.352 38.462 0.00 0.00 0.00 3.86
575 576 6.524734 AGATGATAAATACAGCACGAATCCA 58.475 36.000 0.00 0.00 0.00 3.41
576 577 7.360438 GGAAGATGATAAATACAGCACGAATCC 60.360 40.741 0.00 0.00 0.00 3.01
578 579 7.220030 AGGAAGATGATAAATACAGCACGAAT 58.780 34.615 0.00 0.00 0.00 3.34
579 580 6.582636 AGGAAGATGATAAATACAGCACGAA 58.417 36.000 0.00 0.00 0.00 3.85
580 581 6.161855 AGGAAGATGATAAATACAGCACGA 57.838 37.500 0.00 0.00 0.00 4.35
582 583 8.144478 TCAGTAGGAAGATGATAAATACAGCAC 58.856 37.037 0.00 0.00 0.00 4.40
583 584 8.250143 TCAGTAGGAAGATGATAAATACAGCA 57.750 34.615 0.00 0.00 0.00 4.41
584 585 9.717942 AATCAGTAGGAAGATGATAAATACAGC 57.282 33.333 0.00 0.00 33.40 4.40
593 594 9.553064 GTAATGTCAAATCAGTAGGAAGATGAT 57.447 33.333 0.00 0.00 35.21 2.45
594 595 8.539544 TGTAATGTCAAATCAGTAGGAAGATGA 58.460 33.333 0.00 0.00 0.00 2.92
595 596 8.722480 TGTAATGTCAAATCAGTAGGAAGATG 57.278 34.615 0.00 0.00 0.00 2.90
598 599 8.755941 CGTATGTAATGTCAAATCAGTAGGAAG 58.244 37.037 0.00 0.00 0.00 3.46
600 601 7.778083 ACGTATGTAATGTCAAATCAGTAGGA 58.222 34.615 0.00 0.00 0.00 2.94
602 603 9.083080 TGAACGTATGTAATGTCAAATCAGTAG 57.917 33.333 0.00 0.00 0.00 2.57
603 604 8.989653 TGAACGTATGTAATGTCAAATCAGTA 57.010 30.769 0.00 0.00 0.00 2.74
604 605 7.899178 TGAACGTATGTAATGTCAAATCAGT 57.101 32.000 0.00 0.00 0.00 3.41
606 607 7.116519 TCGTTGAACGTATGTAATGTCAAATCA 59.883 33.333 17.86 0.00 43.14 2.57
607 608 7.449827 TCGTTGAACGTATGTAATGTCAAATC 58.550 34.615 17.86 0.00 43.14 2.17
608 609 7.354025 TCGTTGAACGTATGTAATGTCAAAT 57.646 32.000 17.86 0.00 43.14 2.32
610 611 6.766452 TTCGTTGAACGTATGTAATGTCAA 57.234 33.333 17.86 0.00 43.14 3.18
611 612 6.766452 TTTCGTTGAACGTATGTAATGTCA 57.234 33.333 17.86 0.00 43.14 3.58
637 638 5.432885 AACGACGAATTCCATGTCTTTTT 57.567 34.783 0.00 0.00 0.00 1.94
638 639 5.432885 AAACGACGAATTCCATGTCTTTT 57.567 34.783 0.00 5.44 31.68 2.27
640 641 3.435671 GGAAACGACGAATTCCATGTCTT 59.564 43.478 23.09 0.00 43.73 3.01
642 643 3.000727 AGGAAACGACGAATTCCATGTC 58.999 45.455 26.90 1.03 46.14 3.06
643 644 3.053831 AGGAAACGACGAATTCCATGT 57.946 42.857 26.90 12.65 46.14 3.21
644 645 4.491924 CGTAAGGAAACGACGAATTCCATG 60.492 45.833 26.90 15.52 46.14 3.66
646 647 2.988493 CGTAAGGAAACGACGAATTCCA 59.012 45.455 26.90 13.16 46.14 3.53
647 648 3.244976 TCGTAAGGAAACGACGAATTCC 58.755 45.455 21.55 21.55 46.29 3.01
655 656 5.171147 TGCAAAATTTCGTAAGGAAACGA 57.829 34.783 0.00 0.00 46.81 3.85
657 658 5.176590 TGCATGCAAAATTTCGTAAGGAAAC 59.823 36.000 20.30 0.00 46.81 2.78
658 659 5.755375 TTGCATGCAAAATTTCGTAAGGAAA 59.245 32.000 30.19 1.28 39.72 3.13
659 660 4.876125 TGCATGCAAAATTTCGTAAGGAA 58.124 34.783 20.30 0.00 40.69 3.36
661 662 5.348179 TGATTGCATGCAAAATTTCGTAAGG 59.652 36.000 34.84 0.00 39.55 2.69
662 663 6.392353 TGATTGCATGCAAAATTTCGTAAG 57.608 33.333 34.84 0.00 39.55 2.34
664 665 6.964741 AATGATTGCATGCAAAATTTCGTA 57.035 29.167 34.84 14.35 39.55 3.43
665 666 5.866335 AATGATTGCATGCAAAATTTCGT 57.134 30.435 34.84 24.91 39.55 3.85
666 667 6.022871 CGAAAATGATTGCATGCAAAATTTCG 60.023 34.615 36.69 36.69 40.04 3.46
667 668 7.016466 TCGAAAATGATTGCATGCAAAATTTC 58.984 30.769 34.31 31.94 39.55 2.17
671 672 4.143073 GCTCGAAAATGATTGCATGCAAAA 60.143 37.500 34.84 25.82 39.55 2.44
672 673 3.368539 GCTCGAAAATGATTGCATGCAAA 59.631 39.130 34.84 21.31 39.55 3.68
675 676 2.532235 TGCTCGAAAATGATTGCATGC 58.468 42.857 11.82 11.82 34.26 4.06
676 677 2.534349 GCTGCTCGAAAATGATTGCATG 59.466 45.455 0.00 0.00 34.26 4.06
677 678 2.164827 TGCTGCTCGAAAATGATTGCAT 59.835 40.909 0.00 0.00 35.92 3.96
678 679 1.540707 TGCTGCTCGAAAATGATTGCA 59.459 42.857 0.00 0.00 0.00 4.08
679 680 2.267188 TGCTGCTCGAAAATGATTGC 57.733 45.000 0.00 0.00 0.00 3.56
680 681 4.860352 TGAATTGCTGCTCGAAAATGATTG 59.140 37.500 0.00 0.00 0.00 2.67
683 684 3.503363 ACTGAATTGCTGCTCGAAAATGA 59.497 39.130 0.00 0.00 0.00 2.57
684 685 3.606777 CACTGAATTGCTGCTCGAAAATG 59.393 43.478 0.00 0.00 0.00 2.32
686 687 2.618241 ACACTGAATTGCTGCTCGAAAA 59.382 40.909 0.00 0.00 0.00 2.29
687 688 2.221169 ACACTGAATTGCTGCTCGAAA 58.779 42.857 0.00 0.00 0.00 3.46
688 689 1.882912 ACACTGAATTGCTGCTCGAA 58.117 45.000 0.00 0.00 0.00 3.71
689 690 2.741759 TACACTGAATTGCTGCTCGA 57.258 45.000 0.00 0.00 0.00 4.04
691 692 3.908382 CGTTTTACACTGAATTGCTGCTC 59.092 43.478 0.00 0.00 0.00 4.26
692 693 3.315191 ACGTTTTACACTGAATTGCTGCT 59.685 39.130 0.00 0.00 0.00 4.24
694 695 3.974401 CCACGTTTTACACTGAATTGCTG 59.026 43.478 0.00 0.00 0.00 4.41
696 697 2.724174 GCCACGTTTTACACTGAATTGC 59.276 45.455 0.00 0.00 0.00 3.56
697 698 3.958704 TGCCACGTTTTACACTGAATTG 58.041 40.909 0.00 0.00 0.00 2.32
700 701 1.332375 GCTGCCACGTTTTACACTGAA 59.668 47.619 0.00 0.00 0.00 3.02
701 702 0.941542 GCTGCCACGTTTTACACTGA 59.058 50.000 0.00 0.00 0.00 3.41
702 703 0.660488 TGCTGCCACGTTTTACACTG 59.340 50.000 0.00 0.00 0.00 3.66
703 704 0.944386 CTGCTGCCACGTTTTACACT 59.056 50.000 0.00 0.00 0.00 3.55
704 705 0.941542 TCTGCTGCCACGTTTTACAC 59.058 50.000 0.00 0.00 0.00 2.90
705 706 0.941542 GTCTGCTGCCACGTTTTACA 59.058 50.000 0.00 0.00 0.00 2.41
707 708 1.535028 CATGTCTGCTGCCACGTTTTA 59.465 47.619 0.00 0.00 0.00 1.52
711 712 1.669115 GTCATGTCTGCTGCCACGT 60.669 57.895 0.00 0.00 0.00 4.49
713 714 0.890542 TTGGTCATGTCTGCTGCCAC 60.891 55.000 0.00 0.00 0.00 5.01
714 715 0.178995 TTTGGTCATGTCTGCTGCCA 60.179 50.000 0.00 0.00 0.00 4.92
715 716 0.961019 TTTTGGTCATGTCTGCTGCC 59.039 50.000 0.00 0.00 0.00 4.85
716 717 1.668047 GCTTTTGGTCATGTCTGCTGC 60.668 52.381 0.00 0.00 0.00 5.25
717 718 1.610038 TGCTTTTGGTCATGTCTGCTG 59.390 47.619 0.00 0.00 0.00 4.41
718 719 1.985473 TGCTTTTGGTCATGTCTGCT 58.015 45.000 0.00 0.00 0.00 4.24
719 720 2.397549 GTTGCTTTTGGTCATGTCTGC 58.602 47.619 0.00 0.00 0.00 4.26
720 721 2.361757 TGGTTGCTTTTGGTCATGTCTG 59.638 45.455 0.00 0.00 0.00 3.51
721 722 2.665165 TGGTTGCTTTTGGTCATGTCT 58.335 42.857 0.00 0.00 0.00 3.41
722 723 3.451141 TTGGTTGCTTTTGGTCATGTC 57.549 42.857 0.00 0.00 0.00 3.06
724 725 2.871633 GGTTTGGTTGCTTTTGGTCATG 59.128 45.455 0.00 0.00 0.00 3.07
725 726 2.158827 GGGTTTGGTTGCTTTTGGTCAT 60.159 45.455 0.00 0.00 0.00 3.06
727 728 1.208293 TGGGTTTGGTTGCTTTTGGTC 59.792 47.619 0.00 0.00 0.00 4.02
729 730 1.474855 CCTGGGTTTGGTTGCTTTTGG 60.475 52.381 0.00 0.00 0.00 3.28
730 731 1.484240 TCCTGGGTTTGGTTGCTTTTG 59.516 47.619 0.00 0.00 0.00 2.44
733 734 1.106944 CGTCCTGGGTTTGGTTGCTT 61.107 55.000 0.00 0.00 0.00 3.91
734 735 1.528309 CGTCCTGGGTTTGGTTGCT 60.528 57.895 0.00 0.00 0.00 3.91
735 736 1.104577 TTCGTCCTGGGTTTGGTTGC 61.105 55.000 0.00 0.00 0.00 4.17
746 747 2.480419 AGCTCATTTCGTTTTCGTCCTG 59.520 45.455 0.00 0.00 44.46 3.86
775 3621 0.030235 GTTGGACCGAACTTTGGTGC 59.970 55.000 11.92 11.92 46.91 5.01
811 3657 3.638160 AGAAGAATTTTCAGCAAGTGCCA 59.362 39.130 0.00 0.00 43.38 4.92
814 3660 5.689068 GGACAAGAAGAATTTTCAGCAAGTG 59.311 40.000 0.00 0.00 0.00 3.16
842 3691 1.068055 CAAAATGCAGTGAGGTGGAGC 60.068 52.381 0.00 0.00 0.00 4.70
858 3707 3.244318 GGACGGGTAGGAGAGAAACAAAA 60.244 47.826 0.00 0.00 0.00 2.44
861 3710 1.553706 GGACGGGTAGGAGAGAAACA 58.446 55.000 0.00 0.00 0.00 2.83
882 3739 2.640332 AGGGAAGAAAGAGGACAAGGAC 59.360 50.000 0.00 0.00 0.00 3.85
962 3832 2.754472 TGTGGATGCGACATATGTAGC 58.246 47.619 27.95 27.95 45.09 3.58
989 3866 1.401905 GATGGAAGGTTGATTCGGTGC 59.598 52.381 0.00 0.00 0.00 5.01
992 3869 2.880890 GGATGATGGAAGGTTGATTCGG 59.119 50.000 0.00 0.00 0.00 4.30
1023 3900 5.065218 TGCTTCAACTGAGAAAGAAGTGAAC 59.935 40.000 12.17 1.26 39.62 3.18
1037 3914 3.710326 CATCCATGGATGCTTCAACTG 57.290 47.619 35.69 15.70 44.27 3.16
1071 3948 4.658786 AAGACGGGACCCCTGCCT 62.659 66.667 4.46 0.00 32.02 4.75
1072 3949 4.097361 GAAGACGGGACCCCTGCC 62.097 72.222 4.46 0.00 32.02 4.85
1073 3950 4.097361 GGAAGACGGGACCCCTGC 62.097 72.222 4.46 0.00 32.02 4.85
1173 4059 1.799548 GCCGGAGAAGACGATGAAGAC 60.800 57.143 5.05 0.00 0.00 3.01
1174 4060 0.456221 GCCGGAGAAGACGATGAAGA 59.544 55.000 5.05 0.00 0.00 2.87
1175 4061 0.867753 CGCCGGAGAAGACGATGAAG 60.868 60.000 5.05 0.00 0.00 3.02
1176 4062 1.138883 CGCCGGAGAAGACGATGAA 59.861 57.895 5.05 0.00 0.00 2.57
1177 4063 1.747745 TCGCCGGAGAAGACGATGA 60.748 57.895 5.05 0.00 0.00 2.92
1178 4064 1.586564 GTCGCCGGAGAAGACGATG 60.587 63.158 10.32 0.00 36.85 3.84
1179 4065 2.799371 GTCGCCGGAGAAGACGAT 59.201 61.111 10.32 0.00 36.85 3.73
1699 4618 2.123897 AGCTTGTTTGCCGGTGGT 60.124 55.556 1.90 0.00 0.00 4.16
1700 4619 2.644992 GAGCTTGTTTGCCGGTGG 59.355 61.111 1.90 0.00 0.00 4.61
1701 4620 2.644992 GGAGCTTGTTTGCCGGTG 59.355 61.111 1.90 0.00 0.00 4.94
1702 4621 2.978010 CGGAGCTTGTTTGCCGGT 60.978 61.111 1.90 0.00 40.08 5.28
1705 4624 1.007387 CCAACGGAGCTTGTTTGCC 60.007 57.895 2.81 0.00 0.00 4.52
1706 4625 0.948678 TACCAACGGAGCTTGTTTGC 59.051 50.000 2.81 0.00 0.00 3.68
1707 4626 3.564511 CATTACCAACGGAGCTTGTTTG 58.435 45.455 2.81 3.08 0.00 2.93
1744 4663 2.060980 GGATGACCACCTCCTCGCT 61.061 63.158 0.00 0.00 35.97 4.93
1746 4665 1.680522 CCTGGATGACCACCTCCTCG 61.681 65.000 0.00 0.00 41.77 4.63
1772 4691 2.435586 CTTCTCCTGTGCCGGCAG 60.436 66.667 33.73 20.03 36.31 4.85
1773 4692 2.454832 CTTCTTCTCCTGTGCCGGCA 62.455 60.000 29.03 29.03 0.00 5.69
1782 4701 4.038642 GTCACTGTGTCTTCTTCTTCTCCT 59.961 45.833 7.79 0.00 0.00 3.69
1801 4723 0.880278 TCTTCTTGCTGCCGTGTCAC 60.880 55.000 0.00 0.00 0.00 3.67
1808 4730 3.793144 CGCCGTCTTCTTGCTGCC 61.793 66.667 0.00 0.00 0.00 4.85
1846 4768 1.674962 GCATTCTCCATGGAAGTGAGC 59.325 52.381 17.00 12.39 32.81 4.26
1883 4805 6.054860 ACCTACTACAATGTGCTTCTTCAT 57.945 37.500 0.00 0.00 0.00 2.57
1884 4806 5.483685 ACCTACTACAATGTGCTTCTTCA 57.516 39.130 0.00 0.00 0.00 3.02
1885 4807 6.531948 CACTACCTACTACAATGTGCTTCTTC 59.468 42.308 0.00 0.00 0.00 2.87
1887 4809 5.715279 TCACTACCTACTACAATGTGCTTCT 59.285 40.000 0.00 0.00 0.00 2.85
1916 4838 2.162681 AGCCAAGTGATGCAACTAACC 58.837 47.619 0.00 0.00 0.00 2.85
1932 4854 5.289083 AGAATTTTGTTTTGCCTAAGCCA 57.711 34.783 0.00 0.00 38.69 4.75
1987 5110 4.253685 GTTCATTTACAGTAGGAGCAGCA 58.746 43.478 0.00 0.00 0.00 4.41
2150 5285 6.177610 AGTTTCAGTTTCTTGGTCACAGTTA 58.822 36.000 0.00 0.00 0.00 2.24
2180 5317 2.095110 TCATGTTCTTCTTTGGCATGCG 60.095 45.455 12.44 0.00 37.44 4.73
2184 5321 5.596836 AAACTTCATGTTCTTCTTTGGCA 57.403 34.783 0.00 0.00 38.03 4.92
2206 5343 4.340950 CACAAGTCCTGCCTTTTTCCTTTA 59.659 41.667 0.00 0.00 0.00 1.85
2217 5354 2.985847 GGCCACACAAGTCCTGCC 60.986 66.667 0.00 0.00 0.00 4.85
2262 5402 0.801251 GACTTTGCTGCCTGTGCTAG 59.199 55.000 0.00 0.00 38.71 3.42
2316 5456 0.745468 GTAACGGAGGGCGAGATCTT 59.255 55.000 0.00 0.00 0.00 2.40
2360 5501 0.675633 GCCATTTTGCTGTGACCAGT 59.324 50.000 0.00 0.00 41.02 4.00
2446 5600 3.591527 TGGTTGAACTATTGGGTGAGGAT 59.408 43.478 0.00 0.00 0.00 3.24
2488 5642 7.775053 AAAGTAATCCAGACTTTATTTGGCA 57.225 32.000 0.00 0.00 43.61 4.92
2520 5674 2.603021 ACCATCTAGCAGATCCGACAT 58.397 47.619 0.00 0.00 31.32 3.06
2531 5688 1.710816 AGCCTCCTGTACCATCTAGC 58.289 55.000 0.00 0.00 0.00 3.42
2559 5716 7.581011 AGAAATTTTGGCTGTAAATTTAGCG 57.419 32.000 13.95 0.00 42.27 4.26
2564 5744 9.696917 CAGTAGAAGAAATTTTGGCTGTAAATT 57.303 29.630 0.00 0.00 36.91 1.82
2573 5753 6.738114 TGTTCTGCAGTAGAAGAAATTTTGG 58.262 36.000 14.67 0.00 45.71 3.28
2598 5778 4.158394 TCCTCTATTTTGATGCCAGTTTGC 59.842 41.667 0.00 0.00 0.00 3.68
2599 5779 5.902613 TCCTCTATTTTGATGCCAGTTTG 57.097 39.130 0.00 0.00 0.00 2.93
2601 5781 6.248433 TCTTTCCTCTATTTTGATGCCAGTT 58.752 36.000 0.00 0.00 0.00 3.16
2602 5782 5.819991 TCTTTCCTCTATTTTGATGCCAGT 58.180 37.500 0.00 0.00 0.00 4.00
2603 5783 6.764308 TTCTTTCCTCTATTTTGATGCCAG 57.236 37.500 0.00 0.00 0.00 4.85
2667 5847 1.134936 TCGATTCTGATCCGGCGAAAA 60.135 47.619 9.30 0.00 0.00 2.29
2671 5851 0.249073 AAGTCGATTCTGATCCGGCG 60.249 55.000 0.00 0.00 0.00 6.46
2716 5896 2.362077 GTCACCTGGTGTTGAAGCAATT 59.638 45.455 25.15 0.00 35.42 2.32
2724 5904 2.352030 GCATTCATGTCACCTGGTGTTG 60.352 50.000 25.15 19.76 34.79 3.33
2726 5906 1.074405 AGCATTCATGTCACCTGGTGT 59.926 47.619 25.15 4.61 34.79 4.16
2893 6077 7.355778 CCTTTTGACTTTGAGTTGATCAGTAC 58.644 38.462 0.00 0.00 39.68 2.73
2934 6118 4.780815 TGCTTCCCTGTAATGACTAATGG 58.219 43.478 0.00 0.00 0.00 3.16
2935 6119 5.178252 CGATGCTTCCCTGTAATGACTAATG 59.822 44.000 0.00 0.00 0.00 1.90
2936 6120 5.163301 ACGATGCTTCCCTGTAATGACTAAT 60.163 40.000 0.00 0.00 0.00 1.73
2937 6121 4.161565 ACGATGCTTCCCTGTAATGACTAA 59.838 41.667 0.00 0.00 0.00 2.24
2938 6122 3.704566 ACGATGCTTCCCTGTAATGACTA 59.295 43.478 0.00 0.00 0.00 2.59
2939 6123 2.501723 ACGATGCTTCCCTGTAATGACT 59.498 45.455 0.00 0.00 0.00 3.41
2940 6124 2.906354 ACGATGCTTCCCTGTAATGAC 58.094 47.619 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.