Multiple sequence alignment - TraesCS6A01G397400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G397400 chr6A 100.000 4152 0 0 1 4152 608903745 608899594 0.000000e+00 7668.0
1 TraesCS6A01G397400 chr6A 85.351 1611 193 24 1333 2941 608861204 608859635 0.000000e+00 1628.0
2 TraesCS6A01G397400 chr6A 84.722 1512 207 15 1444 2939 608710177 608711680 0.000000e+00 1491.0
3 TraesCS6A01G397400 chr6A 88.131 733 47 19 704 1424 608861739 608861035 0.000000e+00 835.0
4 TraesCS6A01G397400 chr6A 82.749 684 107 10 1444 2123 608967846 608968522 2.140000e-167 599.0
5 TraesCS6A01G397400 chr6A 92.708 288 20 1 5 291 181910135 181909848 8.300000e-112 414.0
6 TraesCS6A01G397400 chr6A 92.150 293 22 1 4 295 515106580 515106288 2.990000e-111 412.0
7 TraesCS6A01G397400 chr6A 92.683 287 20 1 4 289 564880473 564880187 2.990000e-111 412.0
8 TraesCS6A01G397400 chr6A 82.114 369 33 16 359 706 608862127 608861771 6.790000e-73 285.0
9 TraesCS6A01G397400 chr6A 84.937 239 22 10 3073 3306 608859583 608859354 3.230000e-56 230.0
10 TraesCS6A01G397400 chr6A 80.515 272 28 16 3070 3327 608969416 608969676 7.090000e-43 185.0
11 TraesCS6A01G397400 chr6B 90.045 2913 172 51 330 3159 704179136 704176259 0.000000e+00 3664.0
12 TraesCS6A01G397400 chr6B 84.503 1710 220 21 1337 3024 143466321 143464635 0.000000e+00 1648.0
13 TraesCS6A01G397400 chr6B 85.139 1514 201 16 1444 2941 704187433 704188938 0.000000e+00 1528.0
14 TraesCS6A01G397400 chr6B 83.301 1557 214 28 1460 3001 704304687 704303162 0.000000e+00 1393.0
15 TraesCS6A01G397400 chr6B 86.908 993 120 6 1333 2319 704184006 704183018 0.000000e+00 1105.0
16 TraesCS6A01G397400 chr6B 90.590 627 43 6 802 1424 704184442 704183828 0.000000e+00 817.0
17 TraesCS6A01G397400 chr6B 80.315 1143 145 41 3044 4152 704303189 704302093 0.000000e+00 791.0
18 TraesCS6A01G397400 chr6B 80.648 1018 114 27 3174 4152 704175575 704174602 0.000000e+00 712.0
19 TraesCS6A01G397400 chr6B 86.066 244 8 9 400 628 704184674 704184442 5.360000e-59 239.0
20 TraesCS6A01G397400 chr6B 84.519 239 24 10 3073 3306 704182376 704182146 1.500000e-54 224.0
21 TraesCS6A01G397400 chr5B 92.665 1936 108 16 1337 3271 65588229 65586327 0.000000e+00 2758.0
22 TraesCS6A01G397400 chr5B 90.196 102 7 2 3389 3487 65586158 65586057 3.370000e-26 130.0
23 TraesCS6A01G397400 chr5B 92.222 90 6 1 3269 3358 65586247 65586159 4.360000e-25 126.0
24 TraesCS6A01G397400 chr6D 84.887 1641 209 23 1333 2970 462014409 462012805 0.000000e+00 1620.0
25 TraesCS6A01G397400 chr6D 85.506 1511 197 13 1444 2939 461924096 461925599 0.000000e+00 1557.0
26 TraesCS6A01G397400 chr6D 83.433 1503 204 22 1460 2941 461856019 461854541 0.000000e+00 1354.0
27 TraesCS6A01G397400 chr6D 91.518 224 16 1 1201 1424 462014451 462014231 5.210000e-79 305.0
28 TraesCS6A01G397400 chr6D 76.645 608 96 20 3536 4101 337847265 337846662 1.130000e-75 294.0
29 TraesCS6A01G397400 chr6D 80.368 326 58 5 3772 4095 2900295 2900616 4.150000e-60 243.0
30 TraesCS6A01G397400 chr6D 81.290 310 47 11 3772 4078 403660523 403660824 1.490000e-59 241.0
31 TraesCS6A01G397400 chr6D 84.937 239 23 10 3073 3306 462012779 462012549 3.230000e-56 230.0
32 TraesCS6A01G397400 chr6D 78.515 377 47 16 837 1203 462014896 462014544 2.510000e-52 217.0
33 TraesCS6A01G397400 chr6D 79.923 259 38 6 3073 3327 68362459 68362211 1.190000e-40 178.0
34 TraesCS6A01G397400 chr6D 75.847 236 49 8 3802 4033 82214531 82214762 3.390000e-21 113.0
35 TraesCS6A01G397400 chr6D 74.286 175 40 4 3572 3742 470863502 470863329 7.450000e-08 69.4
36 TraesCS6A01G397400 chr6D 77.679 112 21 4 3638 3745 457329888 457329999 9.630000e-07 65.8
37 TraesCS6A01G397400 chr7A 92.759 290 20 1 4 292 243357049 243356760 6.420000e-113 418.0
38 TraesCS6A01G397400 chr4A 93.031 287 19 1 4 289 39082463 39082177 6.420000e-113 418.0
39 TraesCS6A01G397400 chr4A 73.529 306 60 15 3811 4107 596579995 596579702 3.420000e-16 97.1
40 TraesCS6A01G397400 chr5A 92.708 288 20 1 4 290 60444032 60443745 8.300000e-112 414.0
41 TraesCS6A01G397400 chr3B 92.177 294 21 2 1 292 64504110 64503817 8.300000e-112 414.0
42 TraesCS6A01G397400 chr2B 92.150 293 22 1 1 292 128265065 128265357 2.990000e-111 412.0
43 TraesCS6A01G397400 chr4B 92.123 292 22 1 4 294 40215516 40215225 1.070000e-110 411.0
44 TraesCS6A01G397400 chr4B 80.758 343 60 6 3767 4107 38279101 38278763 3.180000e-66 263.0
45 TraesCS6A01G397400 chr5D 81.000 300 52 5 3773 4070 536382877 536383173 2.500000e-57 233.0
46 TraesCS6A01G397400 chr5D 80.602 299 54 4 3773 4070 500452031 500451736 1.160000e-55 228.0
47 TraesCS6A01G397400 chr5D 78.042 337 64 9 3768 4100 114585938 114585608 1.960000e-48 204.0
48 TraesCS6A01G397400 chr3D 79.938 324 57 7 3773 4093 5358763 5359081 8.980000e-57 231.0
49 TraesCS6A01G397400 chr4D 78.551 345 58 14 3768 4106 8155009 8154675 3.250000e-51 213.0
50 TraesCS6A01G397400 chr4D 73.518 506 91 17 3526 3992 129755725 129756226 7.190000e-33 152.0
51 TraesCS6A01G397400 chrUn 76.923 221 45 5 3526 3742 474690833 474691051 2.030000e-23 121.0
52 TraesCS6A01G397400 chr7B 74.539 271 47 12 3525 3775 227298127 227298395 9.500000e-17 99.0
53 TraesCS6A01G397400 chr7D 76.879 173 34 3 3570 3738 87353326 87353156 4.420000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G397400 chr6A 608899594 608903745 4151 True 7668.000000 7668 100.000000 1 4152 1 chr6A.!!$R4 4151
1 TraesCS6A01G397400 chr6A 608710177 608711680 1503 False 1491.000000 1491 84.722000 1444 2939 1 chr6A.!!$F1 1495
2 TraesCS6A01G397400 chr6A 608859354 608862127 2773 True 744.500000 1628 85.133250 359 3306 4 chr6A.!!$R5 2947
3 TraesCS6A01G397400 chr6A 608967846 608969676 1830 False 392.000000 599 81.632000 1444 3327 2 chr6A.!!$F2 1883
4 TraesCS6A01G397400 chr6B 143464635 143466321 1686 True 1648.000000 1648 84.503000 1337 3024 1 chr6B.!!$R1 1687
5 TraesCS6A01G397400 chr6B 704187433 704188938 1505 False 1528.000000 1528 85.139000 1444 2941 1 chr6B.!!$F1 1497
6 TraesCS6A01G397400 chr6B 704174602 704184674 10072 True 1126.833333 3664 86.462667 330 4152 6 chr6B.!!$R2 3822
7 TraesCS6A01G397400 chr6B 704302093 704304687 2594 True 1092.000000 1393 81.808000 1460 4152 2 chr6B.!!$R3 2692
8 TraesCS6A01G397400 chr5B 65586057 65588229 2172 True 1004.666667 2758 91.694333 1337 3487 3 chr5B.!!$R1 2150
9 TraesCS6A01G397400 chr6D 461924096 461925599 1503 False 1557.000000 1557 85.506000 1444 2939 1 chr6D.!!$F5 1495
10 TraesCS6A01G397400 chr6D 461854541 461856019 1478 True 1354.000000 1354 83.433000 1460 2941 1 chr6D.!!$R3 1481
11 TraesCS6A01G397400 chr6D 462012549 462014896 2347 True 593.000000 1620 84.964250 837 3306 4 chr6D.!!$R5 2469
12 TraesCS6A01G397400 chr6D 337846662 337847265 603 True 294.000000 294 76.645000 3536 4101 1 chr6D.!!$R2 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
117 118 0.036732 ATGCGCTTTCAGTGGAAGGA 59.963 50.0 13.22 0.0 32.18 3.36 F
309 310 0.039527 AATTGGGCTCGTTTTGCGAC 60.040 50.0 0.00 0.0 45.68 5.19 F
362 363 0.103937 CCCTCGGCATCTCTGTTCTC 59.896 60.0 0.00 0.0 0.00 2.87 F
647 672 0.168788 CACGCACTGGCAATTACTGG 59.831 55.0 0.00 0.0 41.24 4.00 F
1650 7780 0.324614 TTGTGGCTGATGTGACGGAT 59.675 50.0 0.00 0.0 0.00 4.18 F
1924 8061 0.743345 GCGGCTGGATCTACGGTTTT 60.743 55.0 0.00 0.0 0.00 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1404 1591 0.458543 CCACCGTCTCGAGGATGTTG 60.459 60.000 13.56 3.90 0.00 3.33 R
1405 1592 0.611062 TCCACCGTCTCGAGGATGTT 60.611 55.000 13.56 0.00 0.00 2.71 R
1434 1621 1.000731 GCATTACCAGCTGTTTTGGCA 59.999 47.619 13.81 0.00 39.39 4.92 R
1924 8061 2.158740 TGTCCGATTCACCAAACCTCAA 60.159 45.455 0.00 0.00 0.00 3.02 R
2736 8928 0.165727 CGCAGCTTGAATTACACGCA 59.834 50.000 0.00 0.00 44.54 5.24 R
3664 10710 0.179034 AGATCAAGCCGGCTCCAATC 60.179 55.000 32.93 28.72 0.00 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.042463 TGATTGAGTTGGTTAGGTGAACA 57.958 39.130 0.00 0.00 40.09 3.18
23 24 5.063204 TGATTGAGTTGGTTAGGTGAACAG 58.937 41.667 0.00 0.00 40.09 3.16
24 25 4.497291 TTGAGTTGGTTAGGTGAACAGT 57.503 40.909 0.00 0.00 40.09 3.55
25 26 3.804036 TGAGTTGGTTAGGTGAACAGTG 58.196 45.455 0.00 0.00 40.09 3.66
26 27 3.452990 TGAGTTGGTTAGGTGAACAGTGA 59.547 43.478 0.00 0.00 40.09 3.41
27 28 4.102524 TGAGTTGGTTAGGTGAACAGTGAT 59.897 41.667 0.00 0.00 40.09 3.06
28 29 5.305902 TGAGTTGGTTAGGTGAACAGTGATA 59.694 40.000 0.00 0.00 40.09 2.15
29 30 6.013725 TGAGTTGGTTAGGTGAACAGTGATAT 60.014 38.462 0.00 0.00 40.09 1.63
30 31 6.407202 AGTTGGTTAGGTGAACAGTGATATC 58.593 40.000 0.00 0.00 40.09 1.63
31 32 6.213600 AGTTGGTTAGGTGAACAGTGATATCT 59.786 38.462 3.98 0.00 40.09 1.98
32 33 6.222038 TGGTTAGGTGAACAGTGATATCTC 57.778 41.667 3.98 0.00 40.09 2.75
33 34 5.128827 TGGTTAGGTGAACAGTGATATCTCC 59.871 44.000 3.98 2.98 40.09 3.71
34 35 5.128827 GGTTAGGTGAACAGTGATATCTCCA 59.871 44.000 3.98 0.00 40.09 3.86
35 36 6.351881 GGTTAGGTGAACAGTGATATCTCCAA 60.352 42.308 3.98 0.00 40.09 3.53
36 37 5.091261 AGGTGAACAGTGATATCTCCAAC 57.909 43.478 3.98 0.00 30.91 3.77
37 38 4.080863 AGGTGAACAGTGATATCTCCAACC 60.081 45.833 3.98 4.53 30.91 3.77
38 39 4.192317 GTGAACAGTGATATCTCCAACCC 58.808 47.826 3.98 0.00 0.00 4.11
39 40 3.843619 TGAACAGTGATATCTCCAACCCA 59.156 43.478 3.98 0.00 0.00 4.51
40 41 3.914426 ACAGTGATATCTCCAACCCAC 57.086 47.619 3.98 0.00 0.00 4.61
41 42 2.505819 ACAGTGATATCTCCAACCCACC 59.494 50.000 3.98 0.00 0.00 4.61
42 43 2.505407 CAGTGATATCTCCAACCCACCA 59.495 50.000 3.98 0.00 0.00 4.17
43 44 2.774234 AGTGATATCTCCAACCCACCAG 59.226 50.000 3.98 0.00 0.00 4.00
44 45 2.126882 TGATATCTCCAACCCACCAGG 58.873 52.381 3.98 0.00 43.78 4.45
57 58 3.004752 CCACCAGGGTTCAAATCCTAG 57.995 52.381 0.00 0.00 37.45 3.02
58 59 2.308866 CCACCAGGGTTCAAATCCTAGT 59.691 50.000 0.00 0.00 37.45 2.57
59 60 3.347216 CACCAGGGTTCAAATCCTAGTG 58.653 50.000 6.28 6.28 41.36 2.74
60 61 2.290960 ACCAGGGTTCAAATCCTAGTGC 60.291 50.000 0.00 0.00 37.45 4.40
61 62 2.025887 CCAGGGTTCAAATCCTAGTGCT 60.026 50.000 0.00 0.00 37.45 4.40
62 63 3.562176 CCAGGGTTCAAATCCTAGTGCTT 60.562 47.826 0.00 0.00 37.45 3.91
63 64 3.441572 CAGGGTTCAAATCCTAGTGCTTG 59.558 47.826 0.00 0.00 37.45 4.01
64 65 2.164422 GGGTTCAAATCCTAGTGCTTGC 59.836 50.000 0.00 0.00 0.00 4.01
65 66 2.819608 GGTTCAAATCCTAGTGCTTGCA 59.180 45.455 0.00 0.00 0.00 4.08
66 67 3.445096 GGTTCAAATCCTAGTGCTTGCAT 59.555 43.478 0.00 0.00 0.00 3.96
67 68 4.082026 GGTTCAAATCCTAGTGCTTGCATT 60.082 41.667 0.00 0.00 0.00 3.56
68 69 5.125417 GGTTCAAATCCTAGTGCTTGCATTA 59.875 40.000 0.00 0.00 0.00 1.90
69 70 6.183360 GGTTCAAATCCTAGTGCTTGCATTAT 60.183 38.462 0.00 0.00 0.00 1.28
70 71 7.260603 GTTCAAATCCTAGTGCTTGCATTATT 58.739 34.615 0.00 0.00 0.00 1.40
71 72 7.031226 TCAAATCCTAGTGCTTGCATTATTC 57.969 36.000 0.00 0.00 0.00 1.75
72 73 6.039717 TCAAATCCTAGTGCTTGCATTATTCC 59.960 38.462 0.00 0.00 0.00 3.01
73 74 4.778213 TCCTAGTGCTTGCATTATTCCT 57.222 40.909 0.00 0.00 0.00 3.36
74 75 4.454678 TCCTAGTGCTTGCATTATTCCTG 58.545 43.478 0.00 0.00 0.00 3.86
75 76 4.164030 TCCTAGTGCTTGCATTATTCCTGA 59.836 41.667 0.00 0.00 0.00 3.86
76 77 4.883585 CCTAGTGCTTGCATTATTCCTGAA 59.116 41.667 0.00 0.00 0.00 3.02
77 78 5.533903 CCTAGTGCTTGCATTATTCCTGAAT 59.466 40.000 0.00 0.00 34.93 2.57
78 79 5.927281 AGTGCTTGCATTATTCCTGAATT 57.073 34.783 0.00 0.00 32.50 2.17
79 80 6.290294 AGTGCTTGCATTATTCCTGAATTT 57.710 33.333 0.00 0.00 32.50 1.82
80 81 7.408756 AGTGCTTGCATTATTCCTGAATTTA 57.591 32.000 0.00 0.00 32.50 1.40
81 82 8.015185 AGTGCTTGCATTATTCCTGAATTTAT 57.985 30.769 0.00 0.00 32.50 1.40
82 83 8.480501 AGTGCTTGCATTATTCCTGAATTTATT 58.519 29.630 0.00 0.00 32.50 1.40
83 84 9.101655 GTGCTTGCATTATTCCTGAATTTATTT 57.898 29.630 0.00 0.00 32.50 1.40
84 85 9.316730 TGCTTGCATTATTCCTGAATTTATTTC 57.683 29.630 0.00 0.00 34.72 2.17
85 86 9.316730 GCTTGCATTATTCCTGAATTTATTTCA 57.683 29.630 0.00 0.00 42.09 2.69
97 98 6.033341 TGAATTTATTTCAGGATTTTCGGCG 58.967 36.000 0.00 0.00 39.44 6.46
98 99 5.828299 ATTTATTTCAGGATTTTCGGCGA 57.172 34.783 4.99 4.99 0.00 5.54
99 100 5.828299 TTTATTTCAGGATTTTCGGCGAT 57.172 34.783 11.76 0.00 0.00 4.58
100 101 3.698029 ATTTCAGGATTTTCGGCGATG 57.302 42.857 11.76 4.79 0.00 3.84
101 102 0.732571 TTCAGGATTTTCGGCGATGC 59.267 50.000 11.76 0.31 0.00 3.91
102 103 1.010797 CAGGATTTTCGGCGATGCG 60.011 57.895 11.76 0.00 0.00 4.73
113 114 3.874873 CGATGCGCTTTCAGTGGA 58.125 55.556 9.73 0.00 0.00 4.02
114 115 2.161831 CGATGCGCTTTCAGTGGAA 58.838 52.632 9.73 0.00 27.73 3.53
115 116 0.095935 CGATGCGCTTTCAGTGGAAG 59.904 55.000 9.73 6.82 33.82 3.46
116 117 0.449388 GATGCGCTTTCAGTGGAAGG 59.551 55.000 13.22 4.51 33.82 3.46
117 118 0.036732 ATGCGCTTTCAGTGGAAGGA 59.963 50.000 13.22 0.00 32.18 3.36
118 119 0.603707 TGCGCTTTCAGTGGAAGGAG 60.604 55.000 13.22 0.00 32.18 3.69
119 120 0.320771 GCGCTTTCAGTGGAAGGAGA 60.321 55.000 13.22 0.00 32.83 3.71
120 121 1.677217 GCGCTTTCAGTGGAAGGAGAT 60.677 52.381 13.22 0.00 32.83 2.75
121 122 2.005451 CGCTTTCAGTGGAAGGAGATG 58.995 52.381 13.22 0.00 32.83 2.90
122 123 2.613977 CGCTTTCAGTGGAAGGAGATGT 60.614 50.000 13.22 0.00 32.83 3.06
123 124 3.416156 GCTTTCAGTGGAAGGAGATGTT 58.584 45.455 13.22 0.00 32.18 2.71
124 125 3.438434 GCTTTCAGTGGAAGGAGATGTTC 59.562 47.826 13.22 0.00 32.18 3.18
132 133 4.808649 GGAGATGTTCCCGTCGAC 57.191 61.111 5.18 5.18 40.37 4.20
133 134 1.226603 GGAGATGTTCCCGTCGACG 60.227 63.158 30.33 30.33 40.37 5.12
134 135 1.651240 GGAGATGTTCCCGTCGACGA 61.651 60.000 37.65 18.99 40.37 4.20
135 136 0.381089 GAGATGTTCCCGTCGACGAT 59.619 55.000 37.65 22.92 43.02 3.73
136 137 0.100682 AGATGTTCCCGTCGACGATG 59.899 55.000 37.65 26.71 43.02 3.84
137 138 0.099968 GATGTTCCCGTCGACGATGA 59.900 55.000 37.65 28.41 43.02 2.92
138 139 0.100682 ATGTTCCCGTCGACGATGAG 59.899 55.000 37.65 20.95 43.02 2.90
139 140 1.226603 GTTCCCGTCGACGATGAGG 60.227 63.158 37.65 28.37 43.02 3.86
140 141 3.060020 TTCCCGTCGACGATGAGGC 62.060 63.158 37.65 0.00 43.02 4.70
147 148 2.805546 GACGATGAGGCGCCTACA 59.194 61.111 32.97 27.68 33.86 2.74
148 149 1.299468 GACGATGAGGCGCCTACAG 60.299 63.158 32.97 22.69 33.86 2.74
149 150 2.005960 GACGATGAGGCGCCTACAGT 62.006 60.000 32.97 25.82 33.86 3.55
150 151 1.589993 CGATGAGGCGCCTACAGTG 60.590 63.158 32.97 19.49 0.00 3.66
151 152 1.816537 GATGAGGCGCCTACAGTGA 59.183 57.895 32.97 9.65 0.00 3.41
152 153 0.528684 GATGAGGCGCCTACAGTGAC 60.529 60.000 32.97 16.10 0.00 3.67
154 155 3.793060 AGGCGCCTACAGTGACTT 58.207 55.556 31.86 0.00 44.04 3.01
155 156 1.592223 AGGCGCCTACAGTGACTTC 59.408 57.895 31.86 0.00 44.04 3.01
156 157 1.805945 GGCGCCTACAGTGACTTCG 60.806 63.158 22.15 0.00 0.00 3.79
157 158 1.080705 GCGCCTACAGTGACTTCGT 60.081 57.895 0.00 0.00 0.00 3.85
158 159 0.169672 GCGCCTACAGTGACTTCGTA 59.830 55.000 0.00 0.00 0.00 3.43
159 160 1.401931 GCGCCTACAGTGACTTCGTAA 60.402 52.381 0.00 0.00 0.00 3.18
160 161 2.923605 GCGCCTACAGTGACTTCGTAAA 60.924 50.000 0.00 0.00 0.00 2.01
161 162 3.508762 CGCCTACAGTGACTTCGTAAAT 58.491 45.455 0.00 0.00 0.00 1.40
162 163 3.546670 CGCCTACAGTGACTTCGTAAATC 59.453 47.826 0.00 0.00 0.00 2.17
163 164 4.674623 CGCCTACAGTGACTTCGTAAATCT 60.675 45.833 0.00 0.00 0.00 2.40
164 165 4.799428 GCCTACAGTGACTTCGTAAATCTC 59.201 45.833 0.00 0.00 0.00 2.75
165 166 5.621555 GCCTACAGTGACTTCGTAAATCTCA 60.622 44.000 0.00 0.00 0.00 3.27
166 167 6.387465 CCTACAGTGACTTCGTAAATCTCAA 58.613 40.000 0.00 0.00 0.00 3.02
167 168 6.308282 CCTACAGTGACTTCGTAAATCTCAAC 59.692 42.308 0.00 0.00 0.00 3.18
168 169 5.597806 ACAGTGACTTCGTAAATCTCAACA 58.402 37.500 0.00 0.00 0.00 3.33
169 170 6.223852 ACAGTGACTTCGTAAATCTCAACAT 58.776 36.000 0.00 0.00 0.00 2.71
170 171 6.146184 ACAGTGACTTCGTAAATCTCAACATG 59.854 38.462 0.00 0.00 0.00 3.21
171 172 6.366061 CAGTGACTTCGTAAATCTCAACATGA 59.634 38.462 0.00 0.00 0.00 3.07
172 173 7.063898 CAGTGACTTCGTAAATCTCAACATGAT 59.936 37.037 0.00 0.00 0.00 2.45
173 174 8.251026 AGTGACTTCGTAAATCTCAACATGATA 58.749 33.333 0.00 0.00 0.00 2.15
174 175 9.035607 GTGACTTCGTAAATCTCAACATGATAT 57.964 33.333 0.00 0.00 0.00 1.63
175 176 9.034544 TGACTTCGTAAATCTCAACATGATATG 57.965 33.333 0.00 0.00 0.00 1.78
177 178 9.035607 ACTTCGTAAATCTCAACATGATATGTC 57.964 33.333 0.00 0.00 44.07 3.06
178 179 7.623268 TCGTAAATCTCAACATGATATGTCG 57.377 36.000 0.00 0.00 44.07 4.35
179 180 6.640907 TCGTAAATCTCAACATGATATGTCGG 59.359 38.462 0.00 0.00 44.07 4.79
180 181 5.679734 AAATCTCAACATGATATGTCGGC 57.320 39.130 0.00 0.00 44.07 5.54
181 182 4.613925 ATCTCAACATGATATGTCGGCT 57.386 40.909 0.00 0.00 44.07 5.52
182 183 3.982475 TCTCAACATGATATGTCGGCTC 58.018 45.455 0.00 0.00 44.07 4.70
183 184 3.384467 TCTCAACATGATATGTCGGCTCA 59.616 43.478 0.00 0.00 44.07 4.26
184 185 3.721035 TCAACATGATATGTCGGCTCAG 58.279 45.455 0.00 0.00 44.07 3.35
185 186 3.132824 TCAACATGATATGTCGGCTCAGT 59.867 43.478 0.00 0.00 44.07 3.41
186 187 3.377346 ACATGATATGTCGGCTCAGTC 57.623 47.619 0.00 0.00 39.92 3.51
187 188 2.961741 ACATGATATGTCGGCTCAGTCT 59.038 45.455 0.00 0.00 39.92 3.24
188 189 3.005261 ACATGATATGTCGGCTCAGTCTC 59.995 47.826 0.00 0.00 39.92 3.36
189 190 2.937519 TGATATGTCGGCTCAGTCTCT 58.062 47.619 0.00 0.00 0.00 3.10
190 191 3.291584 TGATATGTCGGCTCAGTCTCTT 58.708 45.455 0.00 0.00 0.00 2.85
191 192 3.067320 TGATATGTCGGCTCAGTCTCTTG 59.933 47.826 0.00 0.00 0.00 3.02
192 193 0.534412 ATGTCGGCTCAGTCTCTTGG 59.466 55.000 0.00 0.00 0.00 3.61
193 194 0.539669 TGTCGGCTCAGTCTCTTGGA 60.540 55.000 0.00 0.00 0.00 3.53
194 195 0.172352 GTCGGCTCAGTCTCTTGGAG 59.828 60.000 0.00 0.00 0.00 3.86
195 196 0.967887 TCGGCTCAGTCTCTTGGAGG 60.968 60.000 0.00 0.00 0.00 4.30
196 197 1.254284 CGGCTCAGTCTCTTGGAGGT 61.254 60.000 0.00 0.00 0.00 3.85
197 198 0.248843 GGCTCAGTCTCTTGGAGGTG 59.751 60.000 0.00 0.00 0.00 4.00
198 199 0.390998 GCTCAGTCTCTTGGAGGTGC 60.391 60.000 0.00 0.00 0.00 5.01
199 200 1.265236 CTCAGTCTCTTGGAGGTGCT 58.735 55.000 0.00 0.00 0.00 4.40
200 201 1.204467 CTCAGTCTCTTGGAGGTGCTC 59.796 57.143 0.00 0.00 0.00 4.26
201 202 0.972134 CAGTCTCTTGGAGGTGCTCA 59.028 55.000 0.00 0.00 31.08 4.26
202 203 1.554160 CAGTCTCTTGGAGGTGCTCAT 59.446 52.381 0.00 0.00 31.08 2.90
203 204 2.762887 CAGTCTCTTGGAGGTGCTCATA 59.237 50.000 0.00 0.00 31.08 2.15
204 205 3.030291 AGTCTCTTGGAGGTGCTCATAG 58.970 50.000 0.00 0.00 31.08 2.23
205 206 3.027412 GTCTCTTGGAGGTGCTCATAGA 58.973 50.000 0.00 0.00 31.08 1.98
206 207 3.068024 GTCTCTTGGAGGTGCTCATAGAG 59.932 52.174 0.00 0.00 39.10 2.43
207 208 2.364970 CTCTTGGAGGTGCTCATAGAGG 59.635 54.545 0.00 0.00 36.66 3.69
208 209 2.114616 CTTGGAGGTGCTCATAGAGGT 58.885 52.381 0.00 0.00 31.08 3.85
209 210 3.052869 TCTTGGAGGTGCTCATAGAGGTA 60.053 47.826 0.00 0.00 31.08 3.08
210 211 3.398318 TGGAGGTGCTCATAGAGGTAA 57.602 47.619 0.00 0.00 31.08 2.85
211 212 3.300388 TGGAGGTGCTCATAGAGGTAAG 58.700 50.000 0.00 0.00 31.08 2.34
212 213 2.630580 GGAGGTGCTCATAGAGGTAAGG 59.369 54.545 0.00 0.00 31.08 2.69
213 214 3.301274 GAGGTGCTCATAGAGGTAAGGT 58.699 50.000 0.00 0.00 0.00 3.50
214 215 4.471548 GAGGTGCTCATAGAGGTAAGGTA 58.528 47.826 0.00 0.00 0.00 3.08
215 216 5.081032 GAGGTGCTCATAGAGGTAAGGTAT 58.919 45.833 0.00 0.00 0.00 2.73
216 217 6.215515 AGGTGCTCATAGAGGTAAGGTATA 57.784 41.667 0.00 0.00 0.00 1.47
217 218 6.011481 AGGTGCTCATAGAGGTAAGGTATAC 58.989 44.000 0.00 0.00 0.00 1.47
218 219 5.106237 GGTGCTCATAGAGGTAAGGTATACG 60.106 48.000 0.00 0.00 0.00 3.06
219 220 5.472820 GTGCTCATAGAGGTAAGGTATACGT 59.527 44.000 0.00 0.00 0.00 3.57
220 221 5.472478 TGCTCATAGAGGTAAGGTATACGTG 59.528 44.000 0.00 0.00 0.00 4.49
221 222 5.472820 GCTCATAGAGGTAAGGTATACGTGT 59.527 44.000 0.00 0.00 0.00 4.49
222 223 6.568081 GCTCATAGAGGTAAGGTATACGTGTG 60.568 46.154 0.00 0.00 0.00 3.82
223 224 6.359804 TCATAGAGGTAAGGTATACGTGTGT 58.640 40.000 0.00 0.00 0.00 3.72
224 225 4.978083 AGAGGTAAGGTATACGTGTGTG 57.022 45.455 0.00 0.00 0.00 3.82
225 226 4.338879 AGAGGTAAGGTATACGTGTGTGT 58.661 43.478 0.00 0.00 0.00 3.72
226 227 4.157289 AGAGGTAAGGTATACGTGTGTGTG 59.843 45.833 0.00 0.00 0.00 3.82
227 228 3.828451 AGGTAAGGTATACGTGTGTGTGT 59.172 43.478 0.00 0.00 0.00 3.72
228 229 4.281688 AGGTAAGGTATACGTGTGTGTGTT 59.718 41.667 0.00 0.00 0.00 3.32
229 230 4.622740 GGTAAGGTATACGTGTGTGTGTTC 59.377 45.833 0.00 0.00 0.00 3.18
230 231 4.325028 AAGGTATACGTGTGTGTGTTCA 57.675 40.909 0.00 0.00 0.00 3.18
231 232 4.530710 AGGTATACGTGTGTGTGTTCAT 57.469 40.909 0.00 0.00 0.00 2.57
232 233 5.648178 AGGTATACGTGTGTGTGTTCATA 57.352 39.130 0.00 0.00 0.00 2.15
233 234 5.647589 AGGTATACGTGTGTGTGTTCATAG 58.352 41.667 0.00 0.00 0.00 2.23
234 235 4.802039 GGTATACGTGTGTGTGTTCATAGG 59.198 45.833 0.00 0.00 0.00 2.57
235 236 2.163818 ACGTGTGTGTGTTCATAGGG 57.836 50.000 0.00 0.00 0.00 3.53
236 237 1.414919 ACGTGTGTGTGTTCATAGGGT 59.585 47.619 0.00 0.00 0.00 4.34
237 238 2.158871 ACGTGTGTGTGTTCATAGGGTT 60.159 45.455 0.00 0.00 0.00 4.11
238 239 2.223144 CGTGTGTGTGTTCATAGGGTTG 59.777 50.000 0.00 0.00 0.00 3.77
239 240 3.472652 GTGTGTGTGTTCATAGGGTTGA 58.527 45.455 0.00 0.00 0.00 3.18
240 241 3.498397 GTGTGTGTGTTCATAGGGTTGAG 59.502 47.826 0.00 0.00 0.00 3.02
241 242 3.135712 TGTGTGTGTTCATAGGGTTGAGT 59.864 43.478 0.00 0.00 0.00 3.41
242 243 3.498397 GTGTGTGTTCATAGGGTTGAGTG 59.502 47.826 0.00 0.00 0.00 3.51
243 244 3.135712 TGTGTGTTCATAGGGTTGAGTGT 59.864 43.478 0.00 0.00 0.00 3.55
244 245 4.345547 TGTGTGTTCATAGGGTTGAGTGTA 59.654 41.667 0.00 0.00 0.00 2.90
245 246 5.012664 TGTGTGTTCATAGGGTTGAGTGTAT 59.987 40.000 0.00 0.00 0.00 2.29
246 247 5.351465 GTGTGTTCATAGGGTTGAGTGTATG 59.649 44.000 0.00 0.00 0.00 2.39
247 248 4.332819 GTGTTCATAGGGTTGAGTGTATGC 59.667 45.833 0.00 0.00 0.00 3.14
248 249 3.452755 TCATAGGGTTGAGTGTATGCG 57.547 47.619 0.00 0.00 0.00 4.73
249 250 1.867233 CATAGGGTTGAGTGTATGCGC 59.133 52.381 0.00 0.00 0.00 6.09
250 251 0.179121 TAGGGTTGAGTGTATGCGCG 60.179 55.000 0.00 0.00 0.00 6.86
251 252 1.740296 GGGTTGAGTGTATGCGCGT 60.740 57.895 8.43 7.55 0.00 6.01
252 253 1.419922 GGTTGAGTGTATGCGCGTG 59.580 57.895 13.61 0.00 0.00 5.34
253 254 1.289109 GGTTGAGTGTATGCGCGTGT 61.289 55.000 13.61 0.00 0.00 4.49
254 255 1.342555 GTTGAGTGTATGCGCGTGTA 58.657 50.000 13.61 0.00 0.00 2.90
255 256 1.924524 GTTGAGTGTATGCGCGTGTAT 59.075 47.619 13.61 4.63 0.00 2.29
256 257 3.110358 GTTGAGTGTATGCGCGTGTATA 58.890 45.455 13.61 2.40 0.00 1.47
257 258 3.636282 TGAGTGTATGCGCGTGTATAT 57.364 42.857 13.61 0.00 0.00 0.86
258 259 3.305110 TGAGTGTATGCGCGTGTATATG 58.695 45.455 13.61 0.00 0.00 1.78
259 260 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
260 261 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
261 262 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
264 265 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
265 266 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
266 267 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
267 268 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
268 269 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
269 270 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
270 271 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
271 272 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
272 273 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
273 274 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
274 275 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
275 276 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
276 277 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
277 278 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
278 279 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
279 280 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
280 281 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
281 282 2.677199 CGCTTGTGTCTGTACTGATGT 58.323 47.619 5.69 0.00 0.00 3.06
282 283 3.833442 CGCTTGTGTCTGTACTGATGTA 58.167 45.455 5.69 0.00 0.00 2.29
283 284 4.234574 CGCTTGTGTCTGTACTGATGTAA 58.765 43.478 5.69 1.61 0.00 2.41
284 285 4.684242 CGCTTGTGTCTGTACTGATGTAAA 59.316 41.667 5.69 0.00 0.00 2.01
285 286 5.176774 CGCTTGTGTCTGTACTGATGTAAAA 59.823 40.000 5.69 0.00 0.00 1.52
286 287 6.292649 CGCTTGTGTCTGTACTGATGTAAAAA 60.293 38.462 5.69 0.00 0.00 1.94
307 308 1.496934 AAAATTGGGCTCGTTTTGCG 58.503 45.000 0.00 0.00 43.01 4.85
309 310 0.039527 AATTGGGCTCGTTTTGCGAC 60.040 50.000 0.00 0.00 45.68 5.19
310 311 1.862602 ATTGGGCTCGTTTTGCGACC 61.863 55.000 0.00 0.00 45.68 4.79
311 312 4.084888 GGGCTCGTTTTGCGACCG 62.085 66.667 0.00 0.00 45.68 4.79
312 313 3.039588 GGCTCGTTTTGCGACCGA 61.040 61.111 0.00 0.00 45.68 4.69
314 315 2.470286 CTCGTTTTGCGACCGAGC 59.530 61.111 8.78 0.00 45.68 5.03
315 316 3.011760 CTCGTTTTGCGACCGAGCC 62.012 63.158 8.78 0.00 45.68 4.70
316 317 4.424430 CGTTTTGCGACCGAGCCG 62.424 66.667 0.00 0.00 44.77 5.52
317 318 3.039588 GTTTTGCGACCGAGCCGA 61.040 61.111 0.00 0.00 36.02 5.54
318 319 2.736995 TTTTGCGACCGAGCCGAG 60.737 61.111 0.00 0.00 36.02 4.63
319 320 3.509137 TTTTGCGACCGAGCCGAGT 62.509 57.895 0.00 0.00 36.02 4.18
320 321 3.909258 TTTGCGACCGAGCCGAGTC 62.909 63.158 0.00 2.28 36.02 3.36
324 325 2.799371 GACCGAGCCGAGTCGATT 59.201 61.111 15.64 0.59 42.85 3.34
325 326 1.586564 GACCGAGCCGAGTCGATTG 60.587 63.158 15.64 6.06 42.85 2.67
326 327 1.989966 GACCGAGCCGAGTCGATTGA 61.990 60.000 15.64 0.00 42.85 2.57
327 328 1.360551 CCGAGCCGAGTCGATTGAT 59.639 57.895 15.64 0.00 42.85 2.57
328 329 0.591659 CCGAGCCGAGTCGATTGATA 59.408 55.000 15.64 0.00 42.85 2.15
329 330 1.663445 CCGAGCCGAGTCGATTGATAC 60.663 57.143 15.64 0.00 42.85 2.24
330 331 1.264557 CGAGCCGAGTCGATTGATACT 59.735 52.381 15.64 0.00 42.85 2.12
331 332 2.656085 GAGCCGAGTCGATTGATACTG 58.344 52.381 15.64 0.00 0.00 2.74
332 333 2.025155 AGCCGAGTCGATTGATACTGT 58.975 47.619 15.64 0.00 0.00 3.55
333 334 2.427453 AGCCGAGTCGATTGATACTGTT 59.573 45.455 15.64 0.00 0.00 3.16
334 335 3.119101 AGCCGAGTCGATTGATACTGTTT 60.119 43.478 15.64 0.00 0.00 2.83
335 336 3.243177 GCCGAGTCGATTGATACTGTTTC 59.757 47.826 15.64 0.00 0.00 2.78
336 337 3.797256 CCGAGTCGATTGATACTGTTTCC 59.203 47.826 15.64 0.00 0.00 3.13
337 338 3.482472 CGAGTCGATTGATACTGTTTCCG 59.518 47.826 6.73 0.00 0.00 4.30
338 339 3.187700 AGTCGATTGATACTGTTTCCGC 58.812 45.455 0.00 0.00 0.00 5.54
339 340 3.119101 AGTCGATTGATACTGTTTCCGCT 60.119 43.478 0.00 0.00 0.00 5.52
340 341 3.617263 GTCGATTGATACTGTTTCCGCTT 59.383 43.478 0.00 0.00 0.00 4.68
341 342 3.616821 TCGATTGATACTGTTTCCGCTTG 59.383 43.478 0.00 0.00 0.00 4.01
342 343 3.242413 CGATTGATACTGTTTCCGCTTGG 60.242 47.826 0.00 0.00 0.00 3.61
343 344 1.448985 TGATACTGTTTCCGCTTGGC 58.551 50.000 0.00 0.00 0.00 4.52
344 345 0.733150 GATACTGTTTCCGCTTGGCC 59.267 55.000 0.00 0.00 0.00 5.36
345 346 0.679960 ATACTGTTTCCGCTTGGCCC 60.680 55.000 0.00 0.00 0.00 5.80
346 347 1.774894 TACTGTTTCCGCTTGGCCCT 61.775 55.000 0.00 0.00 0.00 5.19
347 348 2.282180 TGTTTCCGCTTGGCCCTC 60.282 61.111 0.00 0.00 0.00 4.30
348 349 3.431725 GTTTCCGCTTGGCCCTCG 61.432 66.667 0.00 0.00 0.00 4.63
349 350 4.715523 TTTCCGCTTGGCCCTCGG 62.716 66.667 18.05 18.05 44.16 4.63
362 363 0.103937 CCCTCGGCATCTCTGTTCTC 59.896 60.000 0.00 0.00 0.00 2.87
472 482 2.876645 GACGGCTCGTTCTCTGCG 60.877 66.667 1.80 0.00 41.37 5.18
525 535 4.477975 GTGACGTCCCTCGCTCCG 62.478 72.222 14.12 0.00 44.19 4.63
647 672 0.168788 CACGCACTGGCAATTACTGG 59.831 55.000 0.00 0.00 41.24 4.00
690 718 1.236628 GGCTAGCATGCTTGGAGATG 58.763 55.000 28.02 8.65 0.00 2.90
732 794 1.834822 GGGACCGGCTAGAGATGCT 60.835 63.158 0.00 0.00 0.00 3.79
733 795 1.663173 GGACCGGCTAGAGATGCTC 59.337 63.158 0.00 0.00 0.00 4.26
740 807 3.256879 CCGGCTAGAGATGCTCTGATTAA 59.743 47.826 7.19 0.00 41.37 1.40
741 808 4.233789 CGGCTAGAGATGCTCTGATTAAC 58.766 47.826 7.19 0.00 41.37 2.01
767 834 3.685139 AAGAAGTGCTAGCTAGTGCAA 57.315 42.857 21.62 3.33 41.10 4.08
769 836 3.791245 AGAAGTGCTAGCTAGTGCAATC 58.209 45.455 21.62 15.44 41.10 2.67
784 854 6.362210 AGTGCAATCATGAAAAACAAAACC 57.638 33.333 0.00 0.00 0.00 3.27
786 856 6.543100 AGTGCAATCATGAAAAACAAAACCAT 59.457 30.769 0.00 0.00 0.00 3.55
787 857 7.067251 AGTGCAATCATGAAAAACAAAACCATT 59.933 29.630 0.00 0.00 0.00 3.16
788 858 8.341173 GTGCAATCATGAAAAACAAAACCATTA 58.659 29.630 0.00 0.00 0.00 1.90
789 859 8.341173 TGCAATCATGAAAAACAAAACCATTAC 58.659 29.630 0.00 0.00 0.00 1.89
790 860 8.341173 GCAATCATGAAAAACAAAACCATTACA 58.659 29.630 0.00 0.00 0.00 2.41
793 863 9.612066 ATCATGAAAAACAAAACCATTACAAGT 57.388 25.926 0.00 0.00 0.00 3.16
794 864 9.442047 TCATGAAAAACAAAACCATTACAAGTT 57.558 25.926 0.00 0.00 0.00 2.66
797 867 9.057089 TGAAAAACAAAACCATTACAAGTTTGT 57.943 25.926 2.75 2.75 44.86 2.83
798 868 9.885934 GAAAAACAAAACCATTACAAGTTTGTT 57.114 25.926 2.46 6.93 42.35 2.83
799 869 9.885934 AAAAACAAAACCATTACAAGTTTGTTC 57.114 25.926 11.84 0.00 42.35 3.18
800 870 8.840833 AAACAAAACCATTACAAGTTTGTTCT 57.159 26.923 11.84 2.76 42.35 3.01
801 871 7.826260 ACAAAACCATTACAAGTTTGTTCTG 57.174 32.000 2.46 1.96 42.35 3.02
861 931 4.323417 TGTGGCAATCTCGTTCTGTAATT 58.677 39.130 0.00 0.00 0.00 1.40
896 969 5.230182 AGAAAAGGATCAATTTCGGTTTGC 58.770 37.500 13.57 0.00 39.83 3.68
902 975 5.043248 GGATCAATTTCGGTTTGCATTAGG 58.957 41.667 0.00 0.00 0.00 2.69
1033 1112 2.066262 TCAAGCCTGATTTTCGACGAC 58.934 47.619 0.00 0.00 0.00 4.34
1038 1117 2.672714 CCTGATTTTCGACGACTGTCA 58.327 47.619 8.73 1.07 45.80 3.58
1045 1124 1.065109 CGACGACTGTCACACACCA 59.935 57.895 8.73 0.00 45.80 4.17
1051 1130 2.639065 GACTGTCACACACCAAAGGAA 58.361 47.619 2.24 0.00 0.00 3.36
1068 1147 7.023575 CCAAAGGAACATCGTTTCAAGAATAG 58.976 38.462 0.00 0.00 32.82 1.73
1147 1232 4.736126 TCGCCATGAAGTTCAATAGAGA 57.264 40.909 10.14 6.12 0.00 3.10
1151 1236 4.450419 GCCATGAAGTTCAATAGAGATCGG 59.550 45.833 10.14 1.32 0.00 4.18
1176 1261 1.468565 GCAGCCGTGATGTAAGTCGTA 60.469 52.381 0.00 0.00 0.00 3.43
1319 1506 2.032030 GTGATGTTGTGGTCAAAGTCCG 60.032 50.000 0.00 0.00 35.20 4.79
1368 1555 0.918983 CAGCTGGTAATGGGGAGGAA 59.081 55.000 5.57 0.00 0.00 3.36
1372 1559 1.923148 CTGGTAATGGGGAGGAAAGGT 59.077 52.381 0.00 0.00 0.00 3.50
1375 1562 3.267551 TGGTAATGGGGAGGAAAGGTTAC 59.732 47.826 0.00 0.00 0.00 2.50
1378 1565 1.128809 TGGGGAGGAAAGGTTACGCA 61.129 55.000 0.00 0.00 0.00 5.24
1389 1576 1.595093 GGTTACGCAAGCTGCCCAAT 61.595 55.000 0.00 0.00 41.12 3.16
1404 1591 1.203052 CCCAATGATGTGCTGGTCAAC 59.797 52.381 0.00 0.00 0.00 3.18
1405 1592 1.887854 CCAATGATGTGCTGGTCAACA 59.112 47.619 0.00 0.00 0.00 3.33
1406 1593 2.296752 CCAATGATGTGCTGGTCAACAA 59.703 45.455 0.00 0.00 0.00 2.83
1441 1628 2.451490 TGGAAACACAGTCTGCCAAAA 58.549 42.857 0.00 0.00 33.40 2.44
1650 7780 0.324614 TTGTGGCTGATGTGACGGAT 59.675 50.000 0.00 0.00 0.00 4.18
1921 8058 3.900892 CGCGGCTGGATCTACGGT 61.901 66.667 0.00 0.00 0.00 4.83
1922 8059 2.499685 GCGGCTGGATCTACGGTT 59.500 61.111 0.00 0.00 0.00 4.44
1924 8061 0.743345 GCGGCTGGATCTACGGTTTT 60.743 55.000 0.00 0.00 0.00 2.43
2491 8683 2.813754 TGCCAAACTCCGATTTCTGAAG 59.186 45.455 0.00 0.00 0.00 3.02
2736 8928 5.436175 TGACAATTTCACGGGATATGTCAT 58.564 37.500 20.32 0.00 0.00 3.06
2743 8935 1.684450 ACGGGATATGTCATGCGTGTA 59.316 47.619 5.68 0.00 0.00 2.90
2818 9010 3.226347 CGAATTTTGTGCCGAGAAGTTC 58.774 45.455 0.00 0.00 0.00 3.01
2898 9090 2.235650 TGAGGAAGAAGATGACAGCAGG 59.764 50.000 0.00 0.00 0.00 4.85
2923 9175 1.667467 GCGACGGCTTCTCCTGATATC 60.667 57.143 0.00 0.00 35.83 1.63
2941 9193 1.860641 TCCACTTCCGCTCATAAGGA 58.139 50.000 0.00 0.00 34.19 3.36
2943 9195 3.572642 TCCACTTCCGCTCATAAGGATA 58.427 45.455 0.00 0.00 36.28 2.59
2950 9202 3.964688 TCCGCTCATAAGGATAAGGTCAA 59.035 43.478 0.00 0.00 0.00 3.18
2951 9203 4.039245 TCCGCTCATAAGGATAAGGTCAAG 59.961 45.833 0.00 0.00 0.00 3.02
2952 9204 4.202264 CCGCTCATAAGGATAAGGTCAAGT 60.202 45.833 0.00 0.00 0.00 3.16
2975 9227 6.718454 AGTTGAAGATGAATCTCAATGTGGTT 59.282 34.615 0.00 0.00 35.76 3.67
2976 9228 6.505044 TGAAGATGAATCTCAATGTGGTTG 57.495 37.500 0.00 0.00 35.76 3.77
2977 9229 5.416639 TGAAGATGAATCTCAATGTGGTTGG 59.583 40.000 0.00 0.00 38.39 3.77
2978 9230 5.183530 AGATGAATCTCAATGTGGTTGGA 57.816 39.130 0.00 0.00 38.39 3.53
2979 9231 5.573219 AGATGAATCTCAATGTGGTTGGAA 58.427 37.500 0.00 0.00 38.39 3.53
2980 9232 5.651139 AGATGAATCTCAATGTGGTTGGAAG 59.349 40.000 0.00 0.00 38.39 3.46
2981 9233 4.081406 TGAATCTCAATGTGGTTGGAAGG 58.919 43.478 0.00 0.00 38.39 3.46
2982 9234 4.202556 TGAATCTCAATGTGGTTGGAAGGA 60.203 41.667 0.00 0.00 38.39 3.36
2983 9235 3.140325 TCTCAATGTGGTTGGAAGGAC 57.860 47.619 0.00 0.00 38.39 3.85
2984 9236 2.711009 TCTCAATGTGGTTGGAAGGACT 59.289 45.455 0.00 0.00 38.39 3.85
2985 9237 3.077359 CTCAATGTGGTTGGAAGGACTC 58.923 50.000 0.00 0.00 38.39 3.36
2986 9238 2.162681 CAATGTGGTTGGAAGGACTCC 58.837 52.381 0.00 0.00 45.64 3.85
2987 9239 0.698818 ATGTGGTTGGAAGGACTCCC 59.301 55.000 0.00 0.00 44.69 4.30
2988 9240 1.379146 GTGGTTGGAAGGACTCCCC 59.621 63.158 0.00 0.00 44.69 4.81
3001 9253 2.701423 GGACTCCCCTATCTCAAAGACC 59.299 54.545 0.00 0.00 0.00 3.85
3002 9254 2.701423 GACTCCCCTATCTCAAAGACCC 59.299 54.545 0.00 0.00 0.00 4.46
3005 9257 3.718956 CTCCCCTATCTCAAAGACCCAAT 59.281 47.826 0.00 0.00 0.00 3.16
3006 9258 4.119155 TCCCCTATCTCAAAGACCCAATT 58.881 43.478 0.00 0.00 0.00 2.32
3007 9259 4.079787 TCCCCTATCTCAAAGACCCAATTG 60.080 45.833 0.00 0.00 0.00 2.32
3008 9260 4.210331 CCCTATCTCAAAGACCCAATTGG 58.790 47.826 18.21 18.21 41.37 3.16
3020 9272 3.757745 CCCAATTGGTTGCTTACTACG 57.242 47.619 22.91 0.00 33.90 3.51
3021 9273 3.078837 CCCAATTGGTTGCTTACTACGT 58.921 45.455 22.91 0.00 33.90 3.57
3022 9274 3.126343 CCCAATTGGTTGCTTACTACGTC 59.874 47.826 22.91 0.00 33.90 4.34
3023 9275 3.749088 CCAATTGGTTGCTTACTACGTCA 59.251 43.478 16.90 0.00 33.90 4.35
3024 9276 4.214545 CCAATTGGTTGCTTACTACGTCAA 59.785 41.667 16.90 0.00 33.90 3.18
3029 9281 4.579270 GTTGCTTACTACGTCAACCATC 57.421 45.455 0.00 0.00 34.39 3.51
3030 9282 3.945981 TGCTTACTACGTCAACCATCA 57.054 42.857 0.00 0.00 0.00 3.07
3033 9285 4.868171 TGCTTACTACGTCAACCATCAATC 59.132 41.667 0.00 0.00 0.00 2.67
3035 9287 5.581085 GCTTACTACGTCAACCATCAATCTT 59.419 40.000 0.00 0.00 0.00 2.40
3055 9307 2.626785 TGGATGTGGTTGGAAGGACTA 58.373 47.619 0.00 0.00 0.00 2.59
3196 10134 3.550820 TCTATGTTGTGGTTGTGCAGTT 58.449 40.909 0.00 0.00 0.00 3.16
3198 10141 1.539157 TGTTGTGGTTGTGCAGTTCA 58.461 45.000 0.00 0.00 0.00 3.18
3329 10365 1.672363 CAAACACAAGCTCTGCTGACA 59.328 47.619 0.00 0.00 39.62 3.58
3373 10410 2.754254 TAGCGGCAAGGAGCTCGA 60.754 61.111 7.83 0.00 43.44 4.04
3503 10544 5.303845 TCGATCTGTTCATCATCATCCTCTT 59.696 40.000 0.00 0.00 0.00 2.85
3504 10545 5.990386 CGATCTGTTCATCATCATCCTCTTT 59.010 40.000 0.00 0.00 0.00 2.52
3567 10609 7.256756 TGAAAATTCACCGAAAATGCAAAAT 57.743 28.000 0.00 0.00 31.01 1.82
3610 10652 8.994429 AATTACATTGATATTTTGAAACCGCA 57.006 26.923 0.00 0.00 0.00 5.69
3636 10678 0.603569 CCACTACTGCCGTCAGAACT 59.396 55.000 0.00 0.00 42.95 3.01
3646 10692 3.436924 TCAGAACTAGCCGCGCGA 61.437 61.111 34.63 11.08 0.00 5.87
3667 10713 2.589157 TTGTCGCCACTCCCCGATT 61.589 57.895 0.00 0.00 35.76 3.34
3681 10727 1.524621 CGATTGGAGCCGGCTTGAT 60.525 57.895 33.34 23.61 0.00 2.57
3688 10734 0.391661 GAGCCGGCTTGATCTTGTCA 60.392 55.000 33.34 0.00 34.25 3.58
3697 10743 4.639310 GGCTTGATCTTGTCAATGACATCT 59.361 41.667 17.48 4.81 45.36 2.90
3708 10754 5.467735 TGTCAATGACATCTGTGAAGTCTTG 59.532 40.000 12.63 6.63 37.67 3.02
3793 10873 1.622312 ACGAGAAACCCTAACCTCACC 59.378 52.381 0.00 0.00 0.00 4.02
3794 10874 1.900486 CGAGAAACCCTAACCTCACCT 59.100 52.381 0.00 0.00 0.00 4.00
3798 10878 0.496841 AACCCTAACCTCACCTCCCT 59.503 55.000 0.00 0.00 0.00 4.20
3802 10882 3.187112 CCCTAACCTCACCTCCCTAAAA 58.813 50.000 0.00 0.00 0.00 1.52
3809 10889 3.432890 CCTCACCTCCCTAAAAGAGATGC 60.433 52.174 0.00 0.00 32.86 3.91
3810 10890 3.181329 TCACCTCCCTAAAAGAGATGCA 58.819 45.455 0.00 0.00 32.86 3.96
3813 10893 3.846588 ACCTCCCTAAAAGAGATGCAAGA 59.153 43.478 0.00 0.00 32.86 3.02
3827 10907 2.418692 TGCAAGAAATCTACGCCGAAA 58.581 42.857 0.00 0.00 0.00 3.46
3831 10911 4.612939 GCAAGAAATCTACGCCGAAACTTT 60.613 41.667 0.00 0.00 0.00 2.66
3843 10923 3.181533 GCCGAAACTTTGTCGACTACATC 60.182 47.826 17.92 6.82 41.02 3.06
3845 10925 4.143389 CCGAAACTTTGTCGACTACATCAC 60.143 45.833 17.92 3.25 41.02 3.06
3846 10926 4.443063 CGAAACTTTGTCGACTACATCACA 59.557 41.667 17.92 0.00 41.02 3.58
3847 10927 5.609696 CGAAACTTTGTCGACTACATCACAC 60.610 44.000 17.92 0.54 41.02 3.82
3852 10933 2.882137 TGTCGACTACATCACACAGACA 59.118 45.455 17.92 0.00 35.38 3.41
3863 10944 2.429250 TCACACAGACAAACTCGAGGAA 59.571 45.455 18.41 0.00 0.00 3.36
3896 10977 7.645058 TTTGGAAGACAAACTCAAAGAAGAT 57.355 32.000 0.00 0.00 43.81 2.40
3911 10992 2.124570 GATGCGCCACCATCCACT 60.125 61.111 4.18 0.00 36.46 4.00
3912 10993 2.438975 ATGCGCCACCATCCACTG 60.439 61.111 4.18 0.00 0.00 3.66
3916 10997 1.003355 CGCCACCATCCACTGAAGT 60.003 57.895 0.00 0.00 0.00 3.01
4043 11126 1.945354 GAGGCGAATCCACGGACTCA 61.945 60.000 0.00 0.00 37.29 3.41
4070 11155 3.181410 TGAAGTCTGGAGGGGAGAGTTTA 60.181 47.826 0.00 0.00 33.98 2.01
4072 11157 2.384029 AGTCTGGAGGGGAGAGTTTACT 59.616 50.000 0.00 0.00 0.00 2.24
4095 11180 1.121378 GCAGTCTAGGGTTAGGGGAC 58.879 60.000 0.00 0.00 0.00 4.46
4101 11186 3.453717 GTCTAGGGTTAGGGGACGAAAAT 59.546 47.826 0.00 0.00 0.00 1.82
4109 11194 0.107165 GGGGACGAAAATGAGAGGGG 60.107 60.000 0.00 0.00 0.00 4.79
4112 11197 1.641577 GACGAAAATGAGAGGGGTCG 58.358 55.000 0.00 0.00 34.77 4.79
4115 11200 0.253327 GAAAATGAGAGGGGTCGCCT 59.747 55.000 8.47 8.47 0.00 5.52
4120 11205 1.684734 GAGAGGGGTCGCCTTGGTA 60.685 63.158 10.26 0.00 0.00 3.25
4137 11222 6.653989 CCTTGGTATGTTTGAGGAGTTAGAT 58.346 40.000 0.00 0.00 0.00 1.98
4141 11226 8.319057 TGGTATGTTTGAGGAGTTAGATATGT 57.681 34.615 0.00 0.00 0.00 2.29
4142 11227 8.421784 TGGTATGTTTGAGGAGTTAGATATGTC 58.578 37.037 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.042463 TGTTCACCTAACCAACTCAATCA 57.958 39.130 0.00 0.00 37.27 2.57
1 2 5.049405 CACTGTTCACCTAACCAACTCAATC 60.049 44.000 0.00 0.00 37.27 2.67
2 3 4.821805 CACTGTTCACCTAACCAACTCAAT 59.178 41.667 0.00 0.00 37.27 2.57
3 4 4.080807 TCACTGTTCACCTAACCAACTCAA 60.081 41.667 0.00 0.00 37.27 3.02
4 5 3.452990 TCACTGTTCACCTAACCAACTCA 59.547 43.478 0.00 0.00 37.27 3.41
5 6 4.067972 TCACTGTTCACCTAACCAACTC 57.932 45.455 0.00 0.00 37.27 3.01
6 7 4.706842 ATCACTGTTCACCTAACCAACT 57.293 40.909 0.00 0.00 37.27 3.16
7 8 6.407202 AGATATCACTGTTCACCTAACCAAC 58.593 40.000 5.32 0.00 37.27 3.77
8 9 6.351881 GGAGATATCACTGTTCACCTAACCAA 60.352 42.308 5.32 0.00 37.27 3.67
9 10 5.128827 GGAGATATCACTGTTCACCTAACCA 59.871 44.000 5.32 0.00 37.27 3.67
10 11 5.128827 TGGAGATATCACTGTTCACCTAACC 59.871 44.000 5.32 0.00 37.27 2.85
11 12 6.222038 TGGAGATATCACTGTTCACCTAAC 57.778 41.667 5.32 0.00 38.67 2.34
12 13 6.351881 GGTTGGAGATATCACTGTTCACCTAA 60.352 42.308 5.32 0.00 0.00 2.69
13 14 5.128827 GGTTGGAGATATCACTGTTCACCTA 59.871 44.000 5.32 0.00 0.00 3.08
14 15 4.080863 GGTTGGAGATATCACTGTTCACCT 60.081 45.833 5.32 0.00 0.00 4.00
15 16 4.192317 GGTTGGAGATATCACTGTTCACC 58.808 47.826 5.32 0.00 0.00 4.02
16 17 4.192317 GGGTTGGAGATATCACTGTTCAC 58.808 47.826 5.32 0.00 0.00 3.18
17 18 3.843619 TGGGTTGGAGATATCACTGTTCA 59.156 43.478 5.32 0.00 0.00 3.18
18 19 4.192317 GTGGGTTGGAGATATCACTGTTC 58.808 47.826 5.32 0.00 0.00 3.18
19 20 3.054361 GGTGGGTTGGAGATATCACTGTT 60.054 47.826 5.32 0.00 0.00 3.16
20 21 2.505819 GGTGGGTTGGAGATATCACTGT 59.494 50.000 5.32 0.00 0.00 3.55
21 22 2.505407 TGGTGGGTTGGAGATATCACTG 59.495 50.000 5.32 0.00 0.00 3.66
22 23 2.774234 CTGGTGGGTTGGAGATATCACT 59.226 50.000 5.32 0.00 0.00 3.41
23 24 2.158755 CCTGGTGGGTTGGAGATATCAC 60.159 54.545 5.32 0.00 0.00 3.06
24 25 2.126882 CCTGGTGGGTTGGAGATATCA 58.873 52.381 5.32 0.00 0.00 2.15
25 26 2.938956 CCTGGTGGGTTGGAGATATC 57.061 55.000 0.00 0.00 0.00 1.63
37 38 2.308866 ACTAGGATTTGAACCCTGGTGG 59.691 50.000 0.00 0.00 41.78 4.61
38 39 3.721087 ACTAGGATTTGAACCCTGGTG 57.279 47.619 0.00 0.00 41.78 4.17
39 40 2.290960 GCACTAGGATTTGAACCCTGGT 60.291 50.000 0.00 0.00 43.75 4.00
40 41 2.025887 AGCACTAGGATTTGAACCCTGG 60.026 50.000 0.00 0.00 37.12 4.45
41 42 3.356529 AGCACTAGGATTTGAACCCTG 57.643 47.619 0.00 0.00 34.11 4.45
42 43 3.690460 CAAGCACTAGGATTTGAACCCT 58.310 45.455 0.00 0.00 36.60 4.34
43 44 2.164422 GCAAGCACTAGGATTTGAACCC 59.836 50.000 0.00 0.00 0.00 4.11
44 45 2.819608 TGCAAGCACTAGGATTTGAACC 59.180 45.455 0.00 0.00 0.00 3.62
45 46 4.708726 ATGCAAGCACTAGGATTTGAAC 57.291 40.909 0.00 0.00 0.00 3.18
46 47 7.408756 AATAATGCAAGCACTAGGATTTGAA 57.591 32.000 0.00 0.00 0.00 2.69
47 48 6.039717 GGAATAATGCAAGCACTAGGATTTGA 59.960 38.462 0.00 0.00 0.00 2.69
48 49 6.040166 AGGAATAATGCAAGCACTAGGATTTG 59.960 38.462 0.00 0.00 0.00 2.32
49 50 6.040166 CAGGAATAATGCAAGCACTAGGATTT 59.960 38.462 0.00 0.00 0.00 2.17
50 51 5.533903 CAGGAATAATGCAAGCACTAGGATT 59.466 40.000 0.00 0.00 0.00 3.01
51 52 5.068636 CAGGAATAATGCAAGCACTAGGAT 58.931 41.667 0.00 0.00 0.00 3.24
52 53 4.164030 TCAGGAATAATGCAAGCACTAGGA 59.836 41.667 0.00 0.00 0.00 2.94
53 54 4.454678 TCAGGAATAATGCAAGCACTAGG 58.545 43.478 0.00 0.00 0.00 3.02
54 55 6.630444 ATTCAGGAATAATGCAAGCACTAG 57.370 37.500 0.00 0.00 0.00 2.57
55 56 7.408756 AAATTCAGGAATAATGCAAGCACTA 57.591 32.000 0.00 0.00 0.00 2.74
56 57 5.927281 AATTCAGGAATAATGCAAGCACT 57.073 34.783 0.00 0.00 0.00 4.40
57 58 8.652810 AATAAATTCAGGAATAATGCAAGCAC 57.347 30.769 0.00 0.00 0.00 4.40
58 59 9.316730 GAAATAAATTCAGGAATAATGCAAGCA 57.683 29.630 0.00 0.00 37.99 3.91
59 60 9.316730 TGAAATAAATTCAGGAATAATGCAAGC 57.683 29.630 0.00 0.00 43.08 4.01
73 74 6.033341 CGCCGAAAATCCTGAAATAAATTCA 58.967 36.000 0.00 0.00 45.71 2.57
74 75 6.262601 TCGCCGAAAATCCTGAAATAAATTC 58.737 36.000 0.00 0.00 38.60 2.17
75 76 6.202516 TCGCCGAAAATCCTGAAATAAATT 57.797 33.333 0.00 0.00 0.00 1.82
76 77 5.828299 TCGCCGAAAATCCTGAAATAAAT 57.172 34.783 0.00 0.00 0.00 1.40
77 78 5.577835 CATCGCCGAAAATCCTGAAATAAA 58.422 37.500 0.00 0.00 0.00 1.40
78 79 4.497340 GCATCGCCGAAAATCCTGAAATAA 60.497 41.667 0.00 0.00 0.00 1.40
79 80 3.003275 GCATCGCCGAAAATCCTGAAATA 59.997 43.478 0.00 0.00 0.00 1.40
80 81 2.223572 GCATCGCCGAAAATCCTGAAAT 60.224 45.455 0.00 0.00 0.00 2.17
81 82 1.132262 GCATCGCCGAAAATCCTGAAA 59.868 47.619 0.00 0.00 0.00 2.69
82 83 0.732571 GCATCGCCGAAAATCCTGAA 59.267 50.000 0.00 0.00 0.00 3.02
83 84 1.428370 CGCATCGCCGAAAATCCTGA 61.428 55.000 0.00 0.00 0.00 3.86
84 85 1.010797 CGCATCGCCGAAAATCCTG 60.011 57.895 0.00 0.00 0.00 3.86
85 86 3.409856 CGCATCGCCGAAAATCCT 58.590 55.556 0.00 0.00 0.00 3.24
96 97 0.095935 CTTCCACTGAAAGCGCATCG 59.904 55.000 11.47 6.82 37.60 3.84
97 98 0.449388 CCTTCCACTGAAAGCGCATC 59.551 55.000 11.47 8.39 37.60 3.91
98 99 0.036732 TCCTTCCACTGAAAGCGCAT 59.963 50.000 11.47 0.00 37.60 4.73
99 100 0.603707 CTCCTTCCACTGAAAGCGCA 60.604 55.000 11.47 0.00 37.60 6.09
100 101 0.320771 TCTCCTTCCACTGAAAGCGC 60.321 55.000 0.00 0.00 37.60 5.92
101 102 2.005451 CATCTCCTTCCACTGAAAGCG 58.995 52.381 0.00 0.00 37.60 4.68
102 103 3.064900 ACATCTCCTTCCACTGAAAGC 57.935 47.619 0.00 0.00 37.60 3.51
103 104 4.006319 GGAACATCTCCTTCCACTGAAAG 58.994 47.826 0.00 0.00 41.61 2.62
104 105 3.244911 GGGAACATCTCCTTCCACTGAAA 60.245 47.826 0.00 0.00 44.68 2.69
105 106 2.305927 GGGAACATCTCCTTCCACTGAA 59.694 50.000 0.00 0.00 44.68 3.02
106 107 1.909302 GGGAACATCTCCTTCCACTGA 59.091 52.381 0.00 0.00 44.68 3.41
107 108 1.406069 CGGGAACATCTCCTTCCACTG 60.406 57.143 0.00 0.00 44.68 3.66
108 109 0.905357 CGGGAACATCTCCTTCCACT 59.095 55.000 0.00 0.00 44.68 4.00
109 110 0.613777 ACGGGAACATCTCCTTCCAC 59.386 55.000 0.00 0.00 44.68 4.02
110 111 0.902531 GACGGGAACATCTCCTTCCA 59.097 55.000 0.00 0.00 44.68 3.53
111 112 0.179108 CGACGGGAACATCTCCTTCC 60.179 60.000 0.00 0.00 44.68 3.46
112 113 0.815734 TCGACGGGAACATCTCCTTC 59.184 55.000 0.00 0.00 44.68 3.46
113 114 0.531200 GTCGACGGGAACATCTCCTT 59.469 55.000 0.00 0.00 44.68 3.36
114 115 1.654954 CGTCGACGGGAACATCTCCT 61.655 60.000 29.70 0.00 44.68 3.69
115 116 1.226603 CGTCGACGGGAACATCTCC 60.227 63.158 29.70 0.00 44.54 3.71
116 117 0.381089 ATCGTCGACGGGAACATCTC 59.619 55.000 35.05 0.00 40.29 2.75
117 118 0.100682 CATCGTCGACGGGAACATCT 59.899 55.000 35.05 9.28 40.29 2.90
118 119 0.099968 TCATCGTCGACGGGAACATC 59.900 55.000 35.05 0.00 40.29 3.06
119 120 0.100682 CTCATCGTCGACGGGAACAT 59.899 55.000 35.05 19.49 40.29 2.71
120 121 1.504900 CTCATCGTCGACGGGAACA 59.495 57.895 35.05 18.02 40.29 3.18
121 122 1.226603 CCTCATCGTCGACGGGAAC 60.227 63.158 35.05 0.00 40.29 3.62
122 123 3.060020 GCCTCATCGTCGACGGGAA 62.060 63.158 35.05 18.80 40.29 3.97
123 124 3.515286 GCCTCATCGTCGACGGGA 61.515 66.667 35.05 28.98 40.29 5.14
124 125 4.907034 CGCCTCATCGTCGACGGG 62.907 72.222 35.05 27.94 40.29 5.28
127 128 2.831366 TAGGCGCCTCATCGTCGAC 61.831 63.158 36.73 5.18 39.34 4.20
128 129 2.515290 TAGGCGCCTCATCGTCGA 60.515 61.111 36.73 10.36 39.34 4.20
129 130 2.353607 GTAGGCGCCTCATCGTCG 60.354 66.667 36.73 0.00 39.34 5.12
130 131 1.299468 CTGTAGGCGCCTCATCGTC 60.299 63.158 36.73 17.21 0.00 4.20
131 132 2.052690 ACTGTAGGCGCCTCATCGT 61.053 57.895 36.73 22.43 0.00 3.73
132 133 1.589993 CACTGTAGGCGCCTCATCG 60.590 63.158 36.73 21.73 0.00 3.84
133 134 0.528684 GTCACTGTAGGCGCCTCATC 60.529 60.000 36.73 24.11 0.00 2.92
134 135 0.972983 AGTCACTGTAGGCGCCTCAT 60.973 55.000 36.73 13.13 0.00 2.90
135 136 1.185618 AAGTCACTGTAGGCGCCTCA 61.186 55.000 36.73 27.51 0.00 3.86
136 137 0.458716 GAAGTCACTGTAGGCGCCTC 60.459 60.000 36.73 24.38 0.00 4.70
137 138 1.592223 GAAGTCACTGTAGGCGCCT 59.408 57.895 34.85 34.85 0.00 5.52
138 139 1.805945 CGAAGTCACTGTAGGCGCC 60.806 63.158 21.89 21.89 0.00 6.53
139 140 0.169672 TACGAAGTCACTGTAGGCGC 59.830 55.000 0.00 0.00 43.93 6.53
140 141 2.624316 TTACGAAGTCACTGTAGGCG 57.376 50.000 0.00 0.00 43.93 5.52
141 142 4.745649 AGATTTACGAAGTCACTGTAGGC 58.254 43.478 0.00 0.00 43.93 3.93
142 143 5.950883 TGAGATTTACGAAGTCACTGTAGG 58.049 41.667 0.00 0.00 43.93 3.18
143 144 6.861572 TGTTGAGATTTACGAAGTCACTGTAG 59.138 38.462 0.00 0.00 43.93 2.74
144 145 6.741109 TGTTGAGATTTACGAAGTCACTGTA 58.259 36.000 0.00 0.00 43.93 2.74
145 146 5.597806 TGTTGAGATTTACGAAGTCACTGT 58.402 37.500 0.00 0.00 43.93 3.55
146 147 6.366061 TCATGTTGAGATTTACGAAGTCACTG 59.634 38.462 0.00 0.00 43.93 3.66
147 148 6.455647 TCATGTTGAGATTTACGAAGTCACT 58.544 36.000 0.00 0.00 43.93 3.41
148 149 6.706055 TCATGTTGAGATTTACGAAGTCAC 57.294 37.500 0.00 0.00 43.93 3.67
149 150 9.034544 CATATCATGTTGAGATTTACGAAGTCA 57.965 33.333 0.00 0.00 43.93 3.41
150 151 9.035607 ACATATCATGTTGAGATTTACGAAGTC 57.964 33.333 0.00 0.00 40.12 3.01
151 152 8.948631 ACATATCATGTTGAGATTTACGAAGT 57.051 30.769 0.00 0.00 41.63 3.01
152 153 8.210525 CGACATATCATGTTGAGATTTACGAAG 58.789 37.037 0.94 0.00 45.59 3.79
153 154 7.169140 CCGACATATCATGTTGAGATTTACGAA 59.831 37.037 7.90 0.00 45.59 3.85
154 155 6.640907 CCGACATATCATGTTGAGATTTACGA 59.359 38.462 7.90 0.00 45.59 3.43
155 156 6.616471 GCCGACATATCATGTTGAGATTTACG 60.616 42.308 7.90 0.00 45.59 3.18
156 157 6.425114 AGCCGACATATCATGTTGAGATTTAC 59.575 38.462 7.90 0.00 45.59 2.01
157 158 6.524734 AGCCGACATATCATGTTGAGATTTA 58.475 36.000 7.90 0.00 45.59 1.40
158 159 5.371526 AGCCGACATATCATGTTGAGATTT 58.628 37.500 7.90 0.00 45.59 2.17
159 160 4.965814 AGCCGACATATCATGTTGAGATT 58.034 39.130 7.90 0.00 45.59 2.40
160 161 4.039609 TGAGCCGACATATCATGTTGAGAT 59.960 41.667 7.90 0.00 45.59 2.75
161 162 3.384467 TGAGCCGACATATCATGTTGAGA 59.616 43.478 7.90 0.00 45.59 3.27
162 163 3.721035 TGAGCCGACATATCATGTTGAG 58.279 45.455 7.90 0.97 45.59 3.02
163 164 3.132824 ACTGAGCCGACATATCATGTTGA 59.867 43.478 7.90 0.00 45.59 3.18
164 165 3.461061 ACTGAGCCGACATATCATGTTG 58.539 45.455 0.00 0.30 45.03 3.33
165 166 3.386078 AGACTGAGCCGACATATCATGTT 59.614 43.478 0.00 0.00 45.03 2.71
167 168 3.255395 AGAGACTGAGCCGACATATCATG 59.745 47.826 0.00 0.00 0.00 3.07
168 169 3.495331 AGAGACTGAGCCGACATATCAT 58.505 45.455 0.00 0.00 0.00 2.45
169 170 2.937519 AGAGACTGAGCCGACATATCA 58.062 47.619 0.00 0.00 0.00 2.15
170 171 3.551863 CCAAGAGACTGAGCCGACATATC 60.552 52.174 0.00 0.00 0.00 1.63
171 172 2.363680 CCAAGAGACTGAGCCGACATAT 59.636 50.000 0.00 0.00 0.00 1.78
172 173 1.751351 CCAAGAGACTGAGCCGACATA 59.249 52.381 0.00 0.00 0.00 2.29
173 174 0.534412 CCAAGAGACTGAGCCGACAT 59.466 55.000 0.00 0.00 0.00 3.06
174 175 0.539669 TCCAAGAGACTGAGCCGACA 60.540 55.000 0.00 0.00 0.00 4.35
175 176 0.172352 CTCCAAGAGACTGAGCCGAC 59.828 60.000 0.00 0.00 0.00 4.79
176 177 0.967887 CCTCCAAGAGACTGAGCCGA 60.968 60.000 0.00 0.00 0.00 5.54
177 178 1.254284 ACCTCCAAGAGACTGAGCCG 61.254 60.000 0.00 0.00 0.00 5.52
178 179 0.248843 CACCTCCAAGAGACTGAGCC 59.751 60.000 0.00 0.00 0.00 4.70
179 180 0.390998 GCACCTCCAAGAGACTGAGC 60.391 60.000 0.00 0.00 0.00 4.26
180 181 1.204467 GAGCACCTCCAAGAGACTGAG 59.796 57.143 0.00 0.00 0.00 3.35
181 182 1.261480 GAGCACCTCCAAGAGACTGA 58.739 55.000 0.00 0.00 0.00 3.41
182 183 0.972134 TGAGCACCTCCAAGAGACTG 59.028 55.000 0.00 0.00 0.00 3.51
183 184 1.949799 ATGAGCACCTCCAAGAGACT 58.050 50.000 0.00 0.00 0.00 3.24
184 185 3.027412 TCTATGAGCACCTCCAAGAGAC 58.973 50.000 0.00 0.00 0.00 3.36
185 186 3.295093 CTCTATGAGCACCTCCAAGAGA 58.705 50.000 12.17 0.00 39.03 3.10
186 187 2.364970 CCTCTATGAGCACCTCCAAGAG 59.635 54.545 11.21 11.21 37.74 2.85
187 188 2.292521 ACCTCTATGAGCACCTCCAAGA 60.293 50.000 0.00 0.00 0.00 3.02
188 189 2.114616 ACCTCTATGAGCACCTCCAAG 58.885 52.381 0.00 0.00 0.00 3.61
189 190 2.254152 ACCTCTATGAGCACCTCCAA 57.746 50.000 0.00 0.00 0.00 3.53
190 191 3.300388 CTTACCTCTATGAGCACCTCCA 58.700 50.000 0.00 0.00 0.00 3.86
191 192 2.630580 CCTTACCTCTATGAGCACCTCC 59.369 54.545 0.00 0.00 0.00 4.30
192 193 3.301274 ACCTTACCTCTATGAGCACCTC 58.699 50.000 0.00 0.00 0.00 3.85
193 194 3.406512 ACCTTACCTCTATGAGCACCT 57.593 47.619 0.00 0.00 0.00 4.00
194 195 5.106237 CGTATACCTTACCTCTATGAGCACC 60.106 48.000 0.00 0.00 0.00 5.01
195 196 5.472820 ACGTATACCTTACCTCTATGAGCAC 59.527 44.000 0.00 0.00 0.00 4.40
196 197 5.472478 CACGTATACCTTACCTCTATGAGCA 59.528 44.000 0.00 0.00 0.00 4.26
197 198 5.472820 ACACGTATACCTTACCTCTATGAGC 59.527 44.000 0.00 0.00 0.00 4.26
198 199 6.485984 ACACACGTATACCTTACCTCTATGAG 59.514 42.308 0.00 0.00 0.00 2.90
199 200 6.261603 CACACACGTATACCTTACCTCTATGA 59.738 42.308 0.00 0.00 0.00 2.15
200 201 6.039047 ACACACACGTATACCTTACCTCTATG 59.961 42.308 0.00 0.00 0.00 2.23
201 202 6.039047 CACACACACGTATACCTTACCTCTAT 59.961 42.308 0.00 0.00 0.00 1.98
202 203 5.355071 CACACACACGTATACCTTACCTCTA 59.645 44.000 0.00 0.00 0.00 2.43
203 204 4.157289 CACACACACGTATACCTTACCTCT 59.843 45.833 0.00 0.00 0.00 3.69
204 205 4.082571 ACACACACACGTATACCTTACCTC 60.083 45.833 0.00 0.00 0.00 3.85
205 206 3.828451 ACACACACACGTATACCTTACCT 59.172 43.478 0.00 0.00 0.00 3.08
206 207 4.178545 ACACACACACGTATACCTTACC 57.821 45.455 0.00 0.00 0.00 2.85
207 208 5.221880 TGAACACACACACGTATACCTTAC 58.778 41.667 0.00 0.00 0.00 2.34
208 209 5.450592 TGAACACACACACGTATACCTTA 57.549 39.130 0.00 0.00 0.00 2.69
209 210 4.325028 TGAACACACACACGTATACCTT 57.675 40.909 0.00 0.00 0.00 3.50
210 211 4.530710 ATGAACACACACACGTATACCT 57.469 40.909 0.00 0.00 0.00 3.08
211 212 4.802039 CCTATGAACACACACACGTATACC 59.198 45.833 0.00 0.00 0.00 2.73
212 213 4.802039 CCCTATGAACACACACACGTATAC 59.198 45.833 0.00 0.00 0.00 1.47
213 214 4.463539 ACCCTATGAACACACACACGTATA 59.536 41.667 0.00 0.00 0.00 1.47
214 215 3.259876 ACCCTATGAACACACACACGTAT 59.740 43.478 0.00 0.00 0.00 3.06
215 216 2.629137 ACCCTATGAACACACACACGTA 59.371 45.455 0.00 0.00 0.00 3.57
216 217 1.414919 ACCCTATGAACACACACACGT 59.585 47.619 0.00 0.00 0.00 4.49
217 218 2.163818 ACCCTATGAACACACACACG 57.836 50.000 0.00 0.00 0.00 4.49
218 219 3.472652 TCAACCCTATGAACACACACAC 58.527 45.455 0.00 0.00 0.00 3.82
219 220 3.135712 ACTCAACCCTATGAACACACACA 59.864 43.478 0.00 0.00 0.00 3.72
220 221 3.498397 CACTCAACCCTATGAACACACAC 59.502 47.826 0.00 0.00 0.00 3.82
221 222 3.135712 ACACTCAACCCTATGAACACACA 59.864 43.478 0.00 0.00 0.00 3.72
222 223 3.740115 ACACTCAACCCTATGAACACAC 58.260 45.455 0.00 0.00 0.00 3.82
223 224 5.487433 CATACACTCAACCCTATGAACACA 58.513 41.667 0.00 0.00 0.00 3.72
224 225 4.332819 GCATACACTCAACCCTATGAACAC 59.667 45.833 0.00 0.00 0.00 3.32
225 226 4.513442 GCATACACTCAACCCTATGAACA 58.487 43.478 0.00 0.00 0.00 3.18
226 227 3.555956 CGCATACACTCAACCCTATGAAC 59.444 47.826 0.00 0.00 0.00 3.18
227 228 3.792401 CGCATACACTCAACCCTATGAA 58.208 45.455 0.00 0.00 0.00 2.57
228 229 2.483013 GCGCATACACTCAACCCTATGA 60.483 50.000 0.30 0.00 0.00 2.15
229 230 1.867233 GCGCATACACTCAACCCTATG 59.133 52.381 0.30 0.00 0.00 2.23
230 231 1.538204 CGCGCATACACTCAACCCTAT 60.538 52.381 8.75 0.00 0.00 2.57
231 232 0.179121 CGCGCATACACTCAACCCTA 60.179 55.000 8.75 0.00 0.00 3.53
232 233 1.447838 CGCGCATACACTCAACCCT 60.448 57.895 8.75 0.00 0.00 4.34
233 234 1.740296 ACGCGCATACACTCAACCC 60.740 57.895 5.73 0.00 0.00 4.11
234 235 1.289109 ACACGCGCATACACTCAACC 61.289 55.000 5.73 0.00 0.00 3.77
235 236 1.342555 TACACGCGCATACACTCAAC 58.657 50.000 5.73 0.00 0.00 3.18
236 237 2.287393 ATACACGCGCATACACTCAA 57.713 45.000 5.73 0.00 0.00 3.02
237 238 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
238 239 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
239 240 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
240 241 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
241 242 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
242 243 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
243 244 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
244 245 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
245 246 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
249 250 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
250 251 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
251 252 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
252 253 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
253 254 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
254 255 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
255 256 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
256 257 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
257 258 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
258 259 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
259 260 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
260 261 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
261 262 2.677199 ACATCAGTACAGACACAAGCG 58.323 47.619 0.00 0.00 0.00 4.68
262 263 6.539649 TTTTACATCAGTACAGACACAAGC 57.460 37.500 0.00 0.00 0.00 4.01
299 300 4.424430 CGGCTCGGTCGCAAAACG 62.424 66.667 0.00 0.00 45.62 3.60
300 301 3.011760 CTCGGCTCGGTCGCAAAAC 62.012 63.158 0.00 0.00 0.00 2.43
301 302 2.736995 CTCGGCTCGGTCGCAAAA 60.737 61.111 0.00 0.00 0.00 2.44
302 303 3.909258 GACTCGGCTCGGTCGCAAA 62.909 63.158 0.00 0.00 0.00 3.68
303 304 4.415332 GACTCGGCTCGGTCGCAA 62.415 66.667 0.00 0.00 0.00 4.85
307 308 1.586564 CAATCGACTCGGCTCGGTC 60.587 63.158 0.00 1.10 34.27 4.79
308 309 1.384989 ATCAATCGACTCGGCTCGGT 61.385 55.000 0.00 0.00 34.27 4.69
309 310 0.591659 TATCAATCGACTCGGCTCGG 59.408 55.000 0.00 0.00 34.27 4.63
310 311 1.264557 AGTATCAATCGACTCGGCTCG 59.735 52.381 0.00 0.00 34.83 5.03
311 312 2.033550 ACAGTATCAATCGACTCGGCTC 59.966 50.000 0.00 0.00 0.00 4.70
312 313 2.025155 ACAGTATCAATCGACTCGGCT 58.975 47.619 0.00 0.00 0.00 5.52
313 314 2.493713 ACAGTATCAATCGACTCGGC 57.506 50.000 0.00 0.00 0.00 5.54
314 315 3.797256 GGAAACAGTATCAATCGACTCGG 59.203 47.826 0.00 0.00 0.00 4.63
315 316 3.482472 CGGAAACAGTATCAATCGACTCG 59.518 47.826 0.00 0.00 0.00 4.18
316 317 3.243177 GCGGAAACAGTATCAATCGACTC 59.757 47.826 0.00 0.00 0.00 3.36
317 318 3.119101 AGCGGAAACAGTATCAATCGACT 60.119 43.478 0.00 0.00 0.00 4.18
318 319 3.187700 AGCGGAAACAGTATCAATCGAC 58.812 45.455 0.00 0.00 0.00 4.20
319 320 3.520290 AGCGGAAACAGTATCAATCGA 57.480 42.857 0.00 0.00 0.00 3.59
320 321 3.242413 CCAAGCGGAAACAGTATCAATCG 60.242 47.826 0.00 0.00 0.00 3.34
321 322 3.487544 GCCAAGCGGAAACAGTATCAATC 60.488 47.826 0.00 0.00 0.00 2.67
322 323 2.423538 GCCAAGCGGAAACAGTATCAAT 59.576 45.455 0.00 0.00 0.00 2.57
323 324 1.810151 GCCAAGCGGAAACAGTATCAA 59.190 47.619 0.00 0.00 0.00 2.57
324 325 1.448985 GCCAAGCGGAAACAGTATCA 58.551 50.000 0.00 0.00 0.00 2.15
325 326 0.733150 GGCCAAGCGGAAACAGTATC 59.267 55.000 0.00 0.00 0.00 2.24
326 327 0.679960 GGGCCAAGCGGAAACAGTAT 60.680 55.000 4.39 0.00 0.00 2.12
327 328 1.302993 GGGCCAAGCGGAAACAGTA 60.303 57.895 4.39 0.00 0.00 2.74
328 329 2.597510 GGGCCAAGCGGAAACAGT 60.598 61.111 4.39 0.00 0.00 3.55
329 330 2.282462 AGGGCCAAGCGGAAACAG 60.282 61.111 6.18 0.00 0.00 3.16
330 331 2.282180 GAGGGCCAAGCGGAAACA 60.282 61.111 6.18 0.00 0.00 2.83
331 332 3.431725 CGAGGGCCAAGCGGAAAC 61.432 66.667 6.18 0.00 0.00 2.78
343 344 0.103937 GAGAACAGAGATGCCGAGGG 59.896 60.000 0.00 0.00 0.00 4.30
344 345 1.110442 AGAGAACAGAGATGCCGAGG 58.890 55.000 0.00 0.00 0.00 4.63
345 346 2.481104 GGAAGAGAACAGAGATGCCGAG 60.481 54.545 0.00 0.00 0.00 4.63
346 347 1.478510 GGAAGAGAACAGAGATGCCGA 59.521 52.381 0.00 0.00 0.00 5.54
347 348 1.472376 GGGAAGAGAACAGAGATGCCG 60.472 57.143 0.00 0.00 0.00 5.69
348 349 1.134250 GGGGAAGAGAACAGAGATGCC 60.134 57.143 0.00 0.00 0.00 4.40
349 350 1.556911 TGGGGAAGAGAACAGAGATGC 59.443 52.381 0.00 0.00 0.00 3.91
350 351 3.988976 TTGGGGAAGAGAACAGAGATG 57.011 47.619 0.00 0.00 0.00 2.90
351 352 5.504853 GAATTTGGGGAAGAGAACAGAGAT 58.495 41.667 0.00 0.00 0.00 2.75
352 353 4.263506 GGAATTTGGGGAAGAGAACAGAGA 60.264 45.833 0.00 0.00 0.00 3.10
353 354 4.013050 GGAATTTGGGGAAGAGAACAGAG 58.987 47.826 0.00 0.00 0.00 3.35
354 355 3.245264 GGGAATTTGGGGAAGAGAACAGA 60.245 47.826 0.00 0.00 0.00 3.41
355 356 3.092301 GGGAATTTGGGGAAGAGAACAG 58.908 50.000 0.00 0.00 0.00 3.16
356 357 2.225267 GGGGAATTTGGGGAAGAGAACA 60.225 50.000 0.00 0.00 0.00 3.18
357 358 2.457598 GGGGAATTTGGGGAAGAGAAC 58.542 52.381 0.00 0.00 0.00 3.01
362 363 0.683179 GTCCGGGGAATTTGGGGAAG 60.683 60.000 0.00 0.00 0.00 3.46
515 525 4.452733 GAACCACCGGAGCGAGGG 62.453 72.222 9.46 1.68 0.00 4.30
517 527 3.358076 GAGGAACCACCGGAGCGAG 62.358 68.421 9.46 0.00 44.74 5.03
525 535 1.376037 CGCTTGGAGAGGAACCACC 60.376 63.158 0.00 0.00 37.13 4.61
647 672 4.988486 GTGTGTGCTTGCCTGCGC 62.988 66.667 0.00 0.00 43.07 6.09
690 718 0.375106 GCTGGTGCGTCAATAAGAGC 59.625 55.000 0.00 0.00 0.00 4.09
732 794 4.630069 GCACTTCTTTAGCGGTTAATCAGA 59.370 41.667 0.00 0.00 0.00 3.27
733 795 4.631813 AGCACTTCTTTAGCGGTTAATCAG 59.368 41.667 0.00 0.00 0.00 2.90
740 807 1.550976 AGCTAGCACTTCTTTAGCGGT 59.449 47.619 18.83 0.00 43.43 5.68
741 808 2.301577 AGCTAGCACTTCTTTAGCGG 57.698 50.000 18.83 0.00 43.43 5.52
767 834 9.612066 ACTTGTAATGGTTTTGTTTTTCATGAT 57.388 25.926 0.00 0.00 0.00 2.45
784 854 5.204833 CGACCACAGAACAAACTTGTAATG 58.795 41.667 0.00 1.13 41.31 1.90
786 856 3.623960 CCGACCACAGAACAAACTTGTAA 59.376 43.478 0.00 0.00 41.31 2.41
787 857 3.118702 TCCGACCACAGAACAAACTTGTA 60.119 43.478 0.00 0.00 41.31 2.41
788 858 2.014128 CCGACCACAGAACAAACTTGT 58.986 47.619 0.00 0.00 44.72 3.16
789 859 2.285083 TCCGACCACAGAACAAACTTG 58.715 47.619 0.00 0.00 0.00 3.16
790 860 2.702592 TCCGACCACAGAACAAACTT 57.297 45.000 0.00 0.00 0.00 2.66
791 861 2.930826 ATCCGACCACAGAACAAACT 57.069 45.000 0.00 0.00 0.00 2.66
792 862 2.875933 TGAATCCGACCACAGAACAAAC 59.124 45.455 0.00 0.00 0.00 2.93
793 863 3.201353 TGAATCCGACCACAGAACAAA 57.799 42.857 0.00 0.00 0.00 2.83
794 864 2.920724 TGAATCCGACCACAGAACAA 57.079 45.000 0.00 0.00 0.00 2.83
795 865 3.334691 GAATGAATCCGACCACAGAACA 58.665 45.455 0.00 0.00 0.00 3.18
796 866 2.348666 CGAATGAATCCGACCACAGAAC 59.651 50.000 0.00 0.00 0.00 3.01
797 867 2.232696 TCGAATGAATCCGACCACAGAA 59.767 45.455 0.00 0.00 0.00 3.02
798 868 1.822371 TCGAATGAATCCGACCACAGA 59.178 47.619 0.00 0.00 0.00 3.41
799 869 2.293677 TCGAATGAATCCGACCACAG 57.706 50.000 0.00 0.00 0.00 3.66
800 870 2.232696 TCTTCGAATGAATCCGACCACA 59.767 45.455 0.00 0.00 34.26 4.17
801 871 2.888594 TCTTCGAATGAATCCGACCAC 58.111 47.619 0.00 0.00 34.26 4.16
861 931 5.804639 TGATCCTTTTCTTCTTCGAATCCA 58.195 37.500 0.00 0.00 0.00 3.41
902 975 5.580691 GGGCATATTAAAACAGCACCTTTTC 59.419 40.000 0.00 0.00 0.00 2.29
1033 1112 2.364632 TGTTCCTTTGGTGTGTGACAG 58.635 47.619 0.00 0.00 0.00 3.51
1038 1117 2.341846 ACGATGTTCCTTTGGTGTGT 57.658 45.000 0.00 0.00 0.00 3.72
1045 1124 6.431234 AGCTATTCTTGAAACGATGTTCCTTT 59.569 34.615 0.00 0.00 0.00 3.11
1051 1130 4.093998 CAGCAGCTATTCTTGAAACGATGT 59.906 41.667 0.00 0.00 0.00 3.06
1068 1147 0.805711 ACAAACAAAACGCCAGCAGC 60.806 50.000 0.00 0.00 38.52 5.25
1211 1398 7.309499 GGACGGATTAGTCATCAGTGATAGATT 60.309 40.741 5.03 5.71 40.11 2.40
1221 1408 2.471815 AGGGGACGGATTAGTCATCA 57.528 50.000 0.00 0.00 42.62 3.07
1368 1555 1.971695 GGGCAGCTTGCGTAACCTT 60.972 57.895 0.00 0.00 46.21 3.50
1372 1559 0.607762 TCATTGGGCAGCTTGCGTAA 60.608 50.000 0.00 0.00 46.21 3.18
1375 1562 1.226859 CATCATTGGGCAGCTTGCG 60.227 57.895 0.00 0.00 46.21 4.85
1389 1576 2.049888 TGTTGTTGACCAGCACATCA 57.950 45.000 0.00 0.00 28.26 3.07
1404 1591 0.458543 CCACCGTCTCGAGGATGTTG 60.459 60.000 13.56 3.90 0.00 3.33
1405 1592 0.611062 TCCACCGTCTCGAGGATGTT 60.611 55.000 13.56 0.00 0.00 2.71
1406 1593 0.611062 TTCCACCGTCTCGAGGATGT 60.611 55.000 13.56 4.20 32.87 3.06
1434 1621 1.000731 GCATTACCAGCTGTTTTGGCA 59.999 47.619 13.81 0.00 39.39 4.92
1435 1622 1.713597 GCATTACCAGCTGTTTTGGC 58.286 50.000 13.81 7.05 39.39 4.52
1437 1624 1.539388 TCCGCATTACCAGCTGTTTTG 59.461 47.619 13.81 5.94 0.00 2.44
1441 1628 1.221840 CCTCCGCATTACCAGCTGT 59.778 57.895 13.81 3.45 0.00 4.40
1584 7714 6.260936 CACGAGGGCTAAGATCAATTACAATT 59.739 38.462 0.00 0.00 0.00 2.32
1650 7780 5.131642 TGGAGACCTCGTACTAAGGATCTTA 59.868 44.000 15.84 7.39 37.35 2.10
1921 8058 3.954904 TCCGATTCACCAAACCTCAAAAA 59.045 39.130 0.00 0.00 0.00 1.94
1922 8059 3.316868 GTCCGATTCACCAAACCTCAAAA 59.683 43.478 0.00 0.00 0.00 2.44
1924 8061 2.158740 TGTCCGATTCACCAAACCTCAA 60.159 45.455 0.00 0.00 0.00 3.02
2246 8413 2.536997 ATCGCTTACTGTGGGGGCAC 62.537 60.000 0.00 0.00 0.00 5.01
2736 8928 0.165727 CGCAGCTTGAATTACACGCA 59.834 50.000 0.00 0.00 44.54 5.24
2743 8935 1.317613 TGTTCACCGCAGCTTGAATT 58.682 45.000 9.01 0.00 34.34 2.17
2779 8971 1.227556 GCACACCTTCCTGTCGTGT 60.228 57.895 0.00 0.00 41.30 4.49
2923 9175 2.918712 ATCCTTATGAGCGGAAGTGG 57.081 50.000 0.00 0.00 32.12 4.00
2941 9193 8.324306 TGAGATTCATCTTCAACTTGACCTTAT 58.676 33.333 0.00 0.00 37.25 1.73
2943 9195 6.537355 TGAGATTCATCTTCAACTTGACCTT 58.463 36.000 0.00 0.00 37.25 3.50
2950 9202 6.243900 ACCACATTGAGATTCATCTTCAACT 58.756 36.000 0.00 0.00 37.25 3.16
2951 9203 6.506500 ACCACATTGAGATTCATCTTCAAC 57.493 37.500 0.00 0.00 37.25 3.18
2952 9204 6.071784 CCAACCACATTGAGATTCATCTTCAA 60.072 38.462 0.00 0.00 41.23 2.69
2976 9228 2.777459 TGAGATAGGGGAGTCCTTCC 57.223 55.000 9.58 2.36 45.47 3.46
2977 9229 4.100344 GTCTTTGAGATAGGGGAGTCCTTC 59.900 50.000 9.58 1.94 45.47 3.46
2978 9230 4.034410 GTCTTTGAGATAGGGGAGTCCTT 58.966 47.826 9.58 0.30 45.47 3.36
2980 9232 2.701423 GGTCTTTGAGATAGGGGAGTCC 59.299 54.545 0.00 0.00 0.00 3.85
2981 9233 2.701423 GGGTCTTTGAGATAGGGGAGTC 59.299 54.545 0.00 0.00 0.00 3.36
2982 9234 2.045885 TGGGTCTTTGAGATAGGGGAGT 59.954 50.000 0.00 0.00 0.00 3.85
2983 9235 2.764269 TGGGTCTTTGAGATAGGGGAG 58.236 52.381 0.00 0.00 0.00 4.30
2984 9236 2.961536 TGGGTCTTTGAGATAGGGGA 57.038 50.000 0.00 0.00 0.00 4.81
2985 9237 4.210331 CAATTGGGTCTTTGAGATAGGGG 58.790 47.826 0.00 0.00 0.00 4.79
2986 9238 4.210331 CCAATTGGGTCTTTGAGATAGGG 58.790 47.826 17.36 0.00 0.00 3.53
3012 9264 6.036083 CCAAGATTGATGGTTGACGTAGTAAG 59.964 42.308 0.00 0.00 34.95 2.34
3014 9266 5.186215 TCCAAGATTGATGGTTGACGTAGTA 59.814 40.000 0.00 0.00 39.29 1.82
3016 9268 4.503910 TCCAAGATTGATGGTTGACGTAG 58.496 43.478 0.00 0.00 39.09 3.51
3017 9269 4.545208 TCCAAGATTGATGGTTGACGTA 57.455 40.909 0.00 0.00 39.09 3.57
3019 9271 3.691118 ACATCCAAGATTGATGGTTGACG 59.309 43.478 9.86 0.00 39.12 4.35
3020 9272 4.142315 CCACATCCAAGATTGATGGTTGAC 60.142 45.833 9.86 0.00 39.12 3.18
3021 9273 4.018490 CCACATCCAAGATTGATGGTTGA 58.982 43.478 9.86 0.00 39.12 3.18
3022 9274 3.765511 ACCACATCCAAGATTGATGGTTG 59.234 43.478 5.36 2.85 41.41 3.77
3023 9275 4.051661 ACCACATCCAAGATTGATGGTT 57.948 40.909 5.36 0.00 35.43 3.67
3024 9276 3.744940 ACCACATCCAAGATTGATGGT 57.255 42.857 5.36 0.00 39.09 3.55
3027 9279 4.320546 TCCAACCACATCCAAGATTGAT 57.679 40.909 0.00 0.00 0.00 2.57
3028 9280 3.805066 TCCAACCACATCCAAGATTGA 57.195 42.857 0.00 0.00 0.00 2.57
3029 9281 3.194116 CCTTCCAACCACATCCAAGATTG 59.806 47.826 0.00 0.00 0.00 2.67
3030 9282 3.075882 TCCTTCCAACCACATCCAAGATT 59.924 43.478 0.00 0.00 0.00 2.40
3033 9285 2.162681 GTCCTTCCAACCACATCCAAG 58.837 52.381 0.00 0.00 0.00 3.61
3035 9287 1.444933 AGTCCTTCCAACCACATCCA 58.555 50.000 0.00 0.00 0.00 3.41
3055 9307 3.069586 TGACGTTGTCTTTGAGATCAGGT 59.930 43.478 0.00 0.00 33.15 4.00
3058 9310 3.059884 GCTGACGTTGTCTTTGAGATCA 58.940 45.455 0.00 0.00 33.15 2.92
3147 9415 6.825213 TGCTTATGCTAGACATTTCATTGTCT 59.175 34.615 11.43 11.43 46.01 3.41
3160 9429 6.703165 CACAACATAGATGTGCTTATGCTAGA 59.297 38.462 0.00 0.00 41.42 2.43
3164 9433 4.336433 ACCACAACATAGATGTGCTTATGC 59.664 41.667 0.00 0.00 45.32 3.14
3165 9434 6.127925 ACAACCACAACATAGATGTGCTTATG 60.128 38.462 0.00 0.00 45.32 1.90
3196 10134 7.451501 TTGACTGAATTCAACATAAGCATGA 57.548 32.000 9.88 0.00 35.96 3.07
3226 10169 7.286546 ACAGAGCATCATTCATAGTACTGTACT 59.713 37.037 22.72 22.72 39.41 2.73
3227 10170 7.429633 ACAGAGCATCATTCATAGTACTGTAC 58.570 38.462 9.93 9.93 37.82 2.90
3228 10171 7.588497 ACAGAGCATCATTCATAGTACTGTA 57.412 36.000 5.39 0.00 37.82 2.74
3229 10172 6.477053 ACAGAGCATCATTCATAGTACTGT 57.523 37.500 5.39 0.00 37.82 3.55
3230 10173 9.486497 AATAACAGAGCATCATTCATAGTACTG 57.514 33.333 5.39 0.00 37.82 2.74
3277 10304 3.537206 AACAGAGTGCCGTGGCTCC 62.537 63.158 12.84 2.77 42.51 4.70
3363 10400 0.606944 ACTCTCACGTCGAGCTCCTT 60.607 55.000 8.47 0.00 41.98 3.36
3369 10406 2.159680 GGAACACTACTCTCACGTCGAG 60.160 54.545 0.00 9.27 43.80 4.04
3373 10410 1.534595 GACGGAACACTACTCTCACGT 59.465 52.381 0.00 0.00 35.89 4.49
3544 10586 8.559222 AAATTTTGCATTTTCGGTGAATTTTC 57.441 26.923 0.00 0.00 0.00 2.29
3596 10638 6.207810 AGTGGTTATTCTGCGGTTTCAAAATA 59.792 34.615 0.00 0.00 0.00 1.40
3610 10652 2.829720 TGACGGCAGTAGTGGTTATTCT 59.170 45.455 0.00 0.00 0.00 2.40
3646 10692 4.309950 GGGGAGTGGCGACAACGT 62.310 66.667 0.00 0.00 46.06 3.99
3664 10710 0.179034 AGATCAAGCCGGCTCCAATC 60.179 55.000 32.93 28.72 0.00 2.67
3667 10713 1.078214 CAAGATCAAGCCGGCTCCA 60.078 57.895 32.93 20.18 0.00 3.86
3681 10727 5.614308 ACTTCACAGATGTCATTGACAAGA 58.386 37.500 22.44 12.63 45.96 3.02
3688 10734 5.123502 GCATCAAGACTTCACAGATGTCATT 59.876 40.000 13.33 4.74 38.60 2.57
3697 10743 1.866601 CACGTGCATCAAGACTTCACA 59.133 47.619 0.82 0.00 0.00 3.58
3708 10754 2.024918 CCTTATGGGCACGTGCATC 58.975 57.895 38.60 29.22 44.36 3.91
3746 10792 3.137533 GCTTCAGATCTATGCAAGGGTC 58.862 50.000 0.00 0.00 0.00 4.46
3793 10873 6.827762 AGATTTCTTGCATCTCTTTTAGGGAG 59.172 38.462 0.00 0.00 0.00 4.30
3794 10874 6.725364 AGATTTCTTGCATCTCTTTTAGGGA 58.275 36.000 0.00 0.00 0.00 4.20
3798 10878 6.037172 GGCGTAGATTTCTTGCATCTCTTTTA 59.963 38.462 0.00 0.00 32.94 1.52
3802 10882 3.462021 GGCGTAGATTTCTTGCATCTCT 58.538 45.455 0.00 0.00 32.94 3.10
3809 10889 4.663636 AAGTTTCGGCGTAGATTTCTTG 57.336 40.909 6.85 0.00 0.00 3.02
3810 10890 4.514066 ACAAAGTTTCGGCGTAGATTTCTT 59.486 37.500 6.85 1.03 0.00 2.52
3813 10893 3.120786 CGACAAAGTTTCGGCGTAGATTT 60.121 43.478 6.85 1.94 32.66 2.17
3827 10907 4.037565 TCTGTGTGATGTAGTCGACAAAGT 59.962 41.667 19.50 0.00 42.78 2.66
3831 10911 2.882137 TGTCTGTGTGATGTAGTCGACA 59.118 45.455 19.50 0.00 43.97 4.35
3843 10923 2.509052 TCCTCGAGTTTGTCTGTGTG 57.491 50.000 12.31 0.00 0.00 3.82
3845 10925 3.371102 TCTTCCTCGAGTTTGTCTGTG 57.629 47.619 12.31 0.00 0.00 3.66
3846 10926 4.310769 CAATCTTCCTCGAGTTTGTCTGT 58.689 43.478 12.31 0.00 0.00 3.41
3847 10927 3.681897 CCAATCTTCCTCGAGTTTGTCTG 59.318 47.826 12.31 2.00 0.00 3.51
3852 10933 4.625607 AACTCCAATCTTCCTCGAGTTT 57.374 40.909 12.31 0.00 40.04 2.66
3896 10977 3.189376 TTCAGTGGATGGTGGCGCA 62.189 57.895 10.83 0.00 0.00 6.09
3942 11024 7.977853 CGCTCAAGTTACTAATTTAGGTTAGGA 59.022 37.037 8.26 0.00 36.27 2.94
3957 11039 0.796927 GGTGCCTTCGCTCAAGTTAC 59.203 55.000 0.00 0.00 35.36 2.50
4014 11096 4.722535 TTCGCCTCCCCTCTGCCT 62.723 66.667 0.00 0.00 0.00 4.75
4015 11097 3.468326 GATTCGCCTCCCCTCTGCC 62.468 68.421 0.00 0.00 0.00 4.85
4043 11126 0.995024 CCCCTCCAGACTTCATTGGT 59.005 55.000 0.00 0.00 35.89 3.67
4070 11155 3.117436 CCCTAACCCTAGACTGCTAGAGT 60.117 52.174 0.00 0.00 45.71 3.24
4072 11157 2.177233 CCCCTAACCCTAGACTGCTAGA 59.823 54.545 0.00 0.00 45.71 2.43
4078 11163 1.302907 TCGTCCCCTAACCCTAGACT 58.697 55.000 0.00 0.00 0.00 3.24
4095 11180 1.090052 GGCGACCCCTCTCATTTTCG 61.090 60.000 0.00 0.00 0.00 3.46
4101 11186 2.449967 TACCAAGGCGACCCCTCTCA 62.450 60.000 0.00 0.00 45.62 3.27
4109 11194 1.737793 CCTCAAACATACCAAGGCGAC 59.262 52.381 0.00 0.00 0.00 5.19
4112 11197 3.073274 ACTCCTCAAACATACCAAGGC 57.927 47.619 0.00 0.00 0.00 4.35
4115 11200 8.768397 ACATATCTAACTCCTCAAACATACCAA 58.232 33.333 0.00 0.00 0.00 3.67
4120 11205 6.463049 CCCGACATATCTAACTCCTCAAACAT 60.463 42.308 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.