Multiple sequence alignment - TraesCS6A01G396400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G396400 chr6A 100.000 5718 0 0 1 5718 608635387 608629670 0.000000e+00 10560.0
1 TraesCS6A01G396400 chr6A 92.308 65 4 1 3396 3460 608631939 608631876 2.190000e-14 91.6
2 TraesCS6A01G396400 chr6A 92.308 65 4 1 3449 3512 608631992 608631928 2.190000e-14 91.6
3 TraesCS6A01G396400 chr6A 82.796 93 13 3 1724 1815 608633474 608633384 4.750000e-11 80.5
4 TraesCS6A01G396400 chr6A 82.796 93 13 3 1914 2004 608633664 608633573 4.750000e-11 80.5
5 TraesCS6A01G396400 chr6D 94.742 1997 61 23 1501 3469 461715446 461713466 0.000000e+00 3066.0
6 TraesCS6A01G396400 chr6D 93.662 1767 70 21 3961 5718 461713064 461711331 0.000000e+00 2604.0
7 TraesCS6A01G396400 chr6D 92.245 1354 58 23 140 1476 461716763 461715440 0.000000e+00 1875.0
8 TraesCS6A01G396400 chr6D 82.983 476 41 22 3465 3910 461713522 461713057 1.490000e-105 394.0
9 TraesCS6A01G396400 chr6D 86.452 155 14 5 1 149 461717303 461717150 4.580000e-36 163.0
10 TraesCS6A01G396400 chr6D 81.720 93 14 3 1914 2004 461715223 461715132 2.210000e-09 75.0
11 TraesCS6A01G396400 chr6B 93.769 1926 75 23 1573 3469 704041956 704040047 0.000000e+00 2850.0
12 TraesCS6A01G396400 chr6B 91.267 1271 70 23 3961 5213 704039646 704038399 0.000000e+00 1694.0
13 TraesCS6A01G396400 chr6B 86.596 940 58 42 624 1522 704042875 704041963 0.000000e+00 976.0
14 TraesCS6A01G396400 chr6B 83.544 474 38 24 3465 3908 704040104 704039641 1.920000e-109 407.0
15 TraesCS6A01G396400 chr6B 86.645 307 36 3 5351 5657 704038358 704038057 9.180000e-88 335.0
16 TraesCS6A01G396400 chr6B 91.124 169 15 0 5418 5586 704035130 704034962 4.460000e-56 230.0
17 TraesCS6A01G396400 chr6B 84.274 248 14 13 144 376 704043660 704043423 9.650000e-53 219.0
18 TraesCS6A01G396400 chrUn 94.737 57 3 0 3905 3961 75828223 75828279 7.890000e-14 89.8
19 TraesCS6A01G396400 chr3A 94.231 52 2 1 3910 3961 9517610 9517560 1.710000e-10 78.7
20 TraesCS6A01G396400 chr2A 95.918 49 1 1 3913 3961 503048180 503048227 1.710000e-10 78.7
21 TraesCS6A01G396400 chr5D 91.837 49 3 1 1669 1717 490450272 490450319 3.700000e-07 67.6
22 TraesCS6A01G396400 chr5B 89.091 55 4 2 3907 3961 699361217 699361269 3.700000e-07 67.6
23 TraesCS6A01G396400 chr3B 93.023 43 2 1 2308 2349 793014182 793014224 1.720000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G396400 chr6A 608629670 608635387 5717 True 2180.840000 10560 90.041600 1 5718 5 chr6A.!!$R1 5717
1 TraesCS6A01G396400 chr6D 461711331 461717303 5972 True 1362.833333 3066 88.634000 1 5718 6 chr6D.!!$R1 5717
2 TraesCS6A01G396400 chr6B 704034962 704043660 8698 True 958.714286 2850 88.174143 144 5657 7 chr6B.!!$R1 5513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
975 1815 0.032952 TTTAACTGTCGCCGCTCTGT 59.967 50.0 0.00 0.00 0.00 3.41 F
1485 2336 0.253044 CTGTATCTGGTGGTGGTGGG 59.747 60.0 0.00 0.00 0.00 4.61 F
1486 2337 0.474854 TGTATCTGGTGGTGGTGGGT 60.475 55.0 0.00 0.00 0.00 4.51 F
1903 2758 0.531753 TCGTGCACAGCTGTAAAGCA 60.532 50.0 22.39 22.39 37.25 3.91 F
3655 4545 0.681175 GGCCACCAGATGCAAAAACT 59.319 50.0 0.00 0.00 0.00 2.66 F
3951 4859 0.041684 TCCCTGGTCTCTGCATCAGA 59.958 55.0 0.00 0.00 38.25 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2307 3171 0.028505 GCCTTGCGTATCATGCAGTG 59.971 55.0 0.00 0.0 41.69 3.66 R
2308 3172 0.107508 AGCCTTGCGTATCATGCAGT 60.108 50.0 0.00 0.0 41.69 4.40 R
2608 3492 0.326264 TCTCAAGGCTCTGCTTTCCC 59.674 55.0 0.00 0.0 0.00 3.97 R
3726 4631 0.537143 ACAAGCGTTCTGGGAATGCA 60.537 50.0 21.37 0.0 34.74 3.96 R
4467 5375 0.037303 CTCAGCACCAGGGATGTTGT 59.963 55.0 0.00 0.0 30.95 3.32 R
5218 6142 0.823460 GGCCACCACCCAATAACATG 59.177 55.0 0.00 0.0 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.768130 TCCAAATGGCATTTTGCAATTG 57.232 36.364 22.26 10.38 45.71 2.32
39 40 3.057456 TCCAAATGGCATTTTGCAATTGC 60.057 39.130 23.69 23.69 45.71 3.56
41 42 6.954903 TCCAAATGGCATTTTGCAATTGCAA 61.955 36.000 35.80 35.80 45.71 4.08
43 44 9.564474 TCCAAATGGCATTTTGCAATTGCAATT 62.564 33.333 38.44 27.84 45.71 2.32
62 68 0.035317 TGCACTACCAGAACTGCCAG 59.965 55.000 0.00 0.00 0.00 4.85
85 91 2.906389 TGGAGTTCCAGCATGAAGTAGT 59.094 45.455 0.00 0.00 42.01 2.73
119 125 3.873805 GCAACCAGCTTCAGTTTCC 57.126 52.632 0.00 0.00 41.15 3.13
130 136 6.587608 CCAGCTTCAGTTTCCAATCAAAATAC 59.412 38.462 0.00 0.00 0.00 1.89
176 578 2.822306 CAGCAGTTGCAATTGCCAG 58.178 52.632 34.81 26.13 41.94 4.85
177 579 1.005394 AGCAGTTGCAATTGCCAGC 60.005 52.632 34.81 22.54 41.94 4.85
207 623 5.336690 GCCACATGTATCACAAACCAAGAAT 60.337 40.000 0.00 0.00 0.00 2.40
208 624 6.127758 GCCACATGTATCACAAACCAAGAATA 60.128 38.462 0.00 0.00 0.00 1.75
209 625 7.576666 GCCACATGTATCACAAACCAAGAATAA 60.577 37.037 0.00 0.00 0.00 1.40
210 626 8.469200 CCACATGTATCACAAACCAAGAATAAT 58.531 33.333 0.00 0.00 0.00 1.28
269 688 0.320073 CACCAGCACCAGCCATTTTG 60.320 55.000 0.00 0.00 43.56 2.44
315 734 1.704070 GCCCTCATCATCTTCCATCCT 59.296 52.381 0.00 0.00 0.00 3.24
383 806 5.784177 TCTGACTAGGAAATGTCAAGTGAC 58.216 41.667 4.43 4.43 41.80 3.67
413 837 1.519719 GGGCCAACACACTTTGCAA 59.480 52.632 4.39 0.00 0.00 4.08
425 849 2.677337 CACTTTGCAAAAACAACCCCAG 59.323 45.455 13.84 0.00 0.00 4.45
458 1272 4.052518 CTCCAACCAGGGGCCCAG 62.053 72.222 27.72 18.21 38.24 4.45
468 1282 3.616086 GGGCCCAGGCACAATAAC 58.384 61.111 19.95 0.00 45.30 1.89
481 1295 3.305950 GCACAATAACCAAGCATCCACAA 60.306 43.478 0.00 0.00 0.00 3.33
486 1300 2.353610 CCAAGCATCCACAAGGGCC 61.354 63.158 0.00 0.00 36.21 5.80
488 1302 1.304713 AAGCATCCACAAGGGCCTG 60.305 57.895 6.92 3.83 36.21 4.85
489 1303 2.757099 GCATCCACAAGGGCCTGG 60.757 66.667 6.92 6.59 36.21 4.45
490 1304 2.765969 CATCCACAAGGGCCTGGT 59.234 61.111 8.09 8.09 36.21 4.00
497 1311 0.980231 ACAAGGGCCTGGTTGCAAAA 60.980 50.000 8.09 0.00 0.00 2.44
498 1312 0.249996 CAAGGGCCTGGTTGCAAAAG 60.250 55.000 6.92 1.58 0.00 2.27
500 1314 0.690744 AGGGCCTGGTTGCAAAAGTT 60.691 50.000 4.50 0.00 0.00 2.66
501 1315 0.532640 GGGCCTGGTTGCAAAAGTTG 60.533 55.000 0.00 0.00 0.00 3.16
568 1382 2.224378 TGGCACAAGGAGAGAGAAAGTG 60.224 50.000 0.00 0.00 31.92 3.16
592 1406 5.219739 ACAGAGAGAGGTAGAGAGAGAGAT 58.780 45.833 0.00 0.00 0.00 2.75
593 1407 6.382087 ACAGAGAGAGGTAGAGAGAGAGATA 58.618 44.000 0.00 0.00 0.00 1.98
750 1576 2.981859 GGAGCACGAGGGAAGAATAA 57.018 50.000 0.00 0.00 0.00 1.40
751 1577 3.261981 GGAGCACGAGGGAAGAATAAA 57.738 47.619 0.00 0.00 0.00 1.40
756 1582 1.134491 ACGAGGGAAGAATAAAGCGGG 60.134 52.381 0.00 0.00 0.00 6.13
941 1781 2.902343 GCTGTTGCGGGGATAGCC 60.902 66.667 0.00 0.00 0.00 3.93
959 1799 7.393515 GGGATAGCCTTGTTTTCTTCTTCTTTA 59.606 37.037 0.00 0.00 0.00 1.85
962 1802 7.646548 AGCCTTGTTTTCTTCTTCTTTAACT 57.353 32.000 0.00 0.00 0.00 2.24
963 1803 7.484140 AGCCTTGTTTTCTTCTTCTTTAACTG 58.516 34.615 0.00 0.00 0.00 3.16
965 1805 7.432545 GCCTTGTTTTCTTCTTCTTTAACTGTC 59.567 37.037 0.00 0.00 0.00 3.51
966 1806 7.640240 CCTTGTTTTCTTCTTCTTTAACTGTCG 59.360 37.037 0.00 0.00 0.00 4.35
967 1807 6.483687 TGTTTTCTTCTTCTTTAACTGTCGC 58.516 36.000 0.00 0.00 0.00 5.19
968 1808 5.668558 TTTCTTCTTCTTTAACTGTCGCC 57.331 39.130 0.00 0.00 0.00 5.54
969 1809 3.314553 TCTTCTTCTTTAACTGTCGCCG 58.685 45.455 0.00 0.00 0.00 6.46
970 1810 1.425412 TCTTCTTTAACTGTCGCCGC 58.575 50.000 0.00 0.00 0.00 6.53
971 1811 1.000506 TCTTCTTTAACTGTCGCCGCT 59.999 47.619 0.00 0.00 0.00 5.52
973 1813 0.601558 TCTTTAACTGTCGCCGCTCT 59.398 50.000 0.00 0.00 0.00 4.09
975 1815 0.032952 TTTAACTGTCGCCGCTCTGT 59.967 50.000 0.00 0.00 0.00 3.41
976 1816 0.666274 TTAACTGTCGCCGCTCTGTG 60.666 55.000 0.00 0.00 0.00 3.66
1229 2073 2.225491 CGATTCATCCGTCTCTCTCTCC 59.775 54.545 0.00 0.00 0.00 3.71
1230 2074 2.060050 TTCATCCGTCTCTCTCTCCC 57.940 55.000 0.00 0.00 0.00 4.30
1231 2075 1.217916 TCATCCGTCTCTCTCTCCCT 58.782 55.000 0.00 0.00 0.00 4.20
1368 2215 2.095461 TCATCGTCTGCAGTAGCTCTT 58.905 47.619 14.67 0.00 42.74 2.85
1370 2217 0.448197 TCGTCTGCAGTAGCTCTTCG 59.552 55.000 14.67 7.18 42.74 3.79
1415 2265 5.707298 TGGGATGAAACTCACTTTGAATCTC 59.293 40.000 0.00 0.00 0.00 2.75
1416 2266 5.942826 GGGATGAAACTCACTTTGAATCTCT 59.057 40.000 0.00 0.00 0.00 3.10
1417 2267 6.093357 GGGATGAAACTCACTTTGAATCTCTC 59.907 42.308 0.00 0.00 0.00 3.20
1433 2283 0.764271 TCTCTGGTTGTGCACATCCA 59.236 50.000 35.82 35.82 41.87 3.41
1476 2327 0.471617 GGCCATGCTCTGTATCTGGT 59.528 55.000 0.00 0.00 0.00 4.00
1480 2331 2.558378 CATGCTCTGTATCTGGTGGTG 58.442 52.381 0.00 0.00 0.00 4.17
1481 2332 0.904649 TGCTCTGTATCTGGTGGTGG 59.095 55.000 0.00 0.00 0.00 4.61
1482 2333 0.905357 GCTCTGTATCTGGTGGTGGT 59.095 55.000 0.00 0.00 0.00 4.16
1483 2334 1.406069 GCTCTGTATCTGGTGGTGGTG 60.406 57.143 0.00 0.00 0.00 4.17
1484 2335 1.208052 CTCTGTATCTGGTGGTGGTGG 59.792 57.143 0.00 0.00 0.00 4.61
1485 2336 0.253044 CTGTATCTGGTGGTGGTGGG 59.747 60.000 0.00 0.00 0.00 4.61
1486 2337 0.474854 TGTATCTGGTGGTGGTGGGT 60.475 55.000 0.00 0.00 0.00 4.51
1487 2338 1.203326 TGTATCTGGTGGTGGTGGGTA 60.203 52.381 0.00 0.00 0.00 3.69
1488 2339 1.910671 GTATCTGGTGGTGGTGGGTAA 59.089 52.381 0.00 0.00 0.00 2.85
1564 2415 5.126061 GCAAGGTACTCATCCAATTGAATGT 59.874 40.000 7.12 1.35 38.49 2.71
1567 2418 6.957631 AGGTACTCATCCAATTGAATGTGTA 58.042 36.000 13.53 13.53 0.00 2.90
1569 2420 6.823689 GGTACTCATCCAATTGAATGTGTACT 59.176 38.462 31.31 10.22 40.69 2.73
1571 2422 5.649395 ACTCATCCAATTGAATGTGTACTGG 59.351 40.000 10.21 0.00 0.00 4.00
1615 2466 4.560108 GCAGCATCAATGGGGTTTATGATC 60.560 45.833 0.00 0.00 30.39 2.92
1616 2467 4.585581 CAGCATCAATGGGGTTTATGATCA 59.414 41.667 0.00 0.00 30.39 2.92
1842 2697 6.397272 TCCATTCAGGATTTGTTGTTATTGC 58.603 36.000 0.00 0.00 43.07 3.56
1845 2700 7.388500 CCATTCAGGATTTGTTGTTATTGCTTT 59.612 33.333 0.00 0.00 41.22 3.51
1846 2701 9.421806 CATTCAGGATTTGTTGTTATTGCTTTA 57.578 29.630 0.00 0.00 0.00 1.85
1903 2758 0.531753 TCGTGCACAGCTGTAAAGCA 60.532 50.000 22.39 22.39 37.25 3.91
1916 2774 5.928839 AGCTGTAAAGCAGTATATTCATCCG 59.071 40.000 7.85 0.00 46.64 4.18
1940 2798 6.471198 CGTTCAGGATTTGATGTCATTGATTG 59.529 38.462 0.00 0.00 35.27 2.67
1942 2800 7.329588 TCAGGATTTGATGTCATTGATTGAG 57.670 36.000 0.00 0.00 34.17 3.02
1953 2811 5.241506 TGTCATTGATTGAGTTTGGAGAACC 59.758 40.000 0.00 0.00 34.17 3.62
1954 2812 5.241506 GTCATTGATTGAGTTTGGAGAACCA 59.758 40.000 0.00 0.00 38.67 3.67
1955 2813 6.012113 TCATTGATTGAGTTTGGAGAACCAT 58.988 36.000 0.00 0.00 46.34 3.55
1956 2814 5.964958 TTGATTGAGTTTGGAGAACCATC 57.035 39.130 0.00 0.00 46.34 3.51
1957 2815 4.002982 TGATTGAGTTTGGAGAACCATCG 58.997 43.478 0.00 0.00 46.34 3.84
1958 2816 3.762407 TTGAGTTTGGAGAACCATCGA 57.238 42.857 0.00 0.00 46.34 3.59
1959 2817 3.981071 TGAGTTTGGAGAACCATCGAT 57.019 42.857 0.00 0.00 46.34 3.59
1960 2818 4.286297 TGAGTTTGGAGAACCATCGATT 57.714 40.909 0.00 0.00 46.34 3.34
1961 2819 5.414789 TGAGTTTGGAGAACCATCGATTA 57.585 39.130 0.00 0.00 46.34 1.75
1962 2820 5.175859 TGAGTTTGGAGAACCATCGATTAC 58.824 41.667 0.00 0.00 46.34 1.89
1963 2821 5.160607 AGTTTGGAGAACCATCGATTACA 57.839 39.130 0.00 0.00 46.34 2.41
1964 2822 5.745227 AGTTTGGAGAACCATCGATTACAT 58.255 37.500 0.00 0.00 46.34 2.29
1967 2825 8.647796 AGTTTGGAGAACCATCGATTACATATA 58.352 33.333 0.00 0.00 46.34 0.86
2004 2862 6.092122 TGTGCACAGTTGTAAAGCAGTATATC 59.908 38.462 17.42 0.00 35.66 1.63
2005 2863 6.092122 GTGCACAGTTGTAAAGCAGTATATCA 59.908 38.462 13.17 0.00 35.66 2.15
2008 2866 7.481798 GCACAGTTGTAAAGCAGTATATCAAAC 59.518 37.037 0.00 0.00 0.00 2.93
2009 2867 8.503196 CACAGTTGTAAAGCAGTATATCAAACA 58.497 33.333 0.00 0.00 0.00 2.83
2015 2873 9.405587 TGTAAAGCAGTATATCAAACAAAAAGC 57.594 29.630 0.00 0.00 0.00 3.51
2016 2874 9.626045 GTAAAGCAGTATATCAAACAAAAAGCT 57.374 29.630 0.00 0.00 0.00 3.74
2019 2877 8.748380 AGCAGTATATCAAACAAAAAGCTTTC 57.252 30.769 13.10 0.00 0.00 2.62
2028 2886 7.162082 TCAAACAAAAAGCTTTCCTTTGGTAA 58.838 30.769 23.00 11.05 42.82 2.85
2073 2932 3.871594 GCATCCCTCGCCATGTATATAAC 59.128 47.826 0.00 0.00 0.00 1.89
2079 2943 6.439375 TCCCTCGCCATGTATATAACAGTATT 59.561 38.462 0.00 0.00 42.70 1.89
2125 2989 5.173131 GCTTATTGTCAAAGTGTTCGGTTTG 59.827 40.000 0.00 0.00 35.38 2.93
2298 3162 9.914834 TTTGCCTAAAGTTATGGTATATCACTT 57.085 29.630 0.00 0.00 0.00 3.16
2299 3163 8.902540 TGCCTAAAGTTATGGTATATCACTTG 57.097 34.615 0.00 0.00 0.00 3.16
2300 3164 8.491134 TGCCTAAAGTTATGGTATATCACTTGT 58.509 33.333 0.00 0.00 0.00 3.16
2301 3165 8.774586 GCCTAAAGTTATGGTATATCACTTGTG 58.225 37.037 0.00 0.00 0.00 3.33
2302 3166 9.832445 CCTAAAGTTATGGTATATCACTTGTGT 57.168 33.333 0.46 0.00 0.00 3.72
2305 3169 9.905713 AAAGTTATGGTATATCACTTGTGTCAT 57.094 29.630 0.46 0.00 0.00 3.06
2307 3171 9.982651 AGTTATGGTATATCACTTGTGTCATAC 57.017 33.333 13.66 13.66 0.00 2.39
2308 3172 9.758651 GTTATGGTATATCACTTGTGTCATACA 57.241 33.333 18.89 11.45 37.56 2.29
2485 3369 6.073548 CCGAAAGCTCCATACTAATGTCAATC 60.074 42.308 0.00 0.00 0.00 2.67
2495 3379 9.669353 CCATACTAATGTCAATCTTGCATAAAC 57.331 33.333 0.00 0.00 0.00 2.01
2599 3483 6.263168 CCAACTATCTTTTCTTGGGCGATTAT 59.737 38.462 0.00 0.00 31.16 1.28
2608 3492 1.597027 GGGCGATTATGTGGACCGG 60.597 63.158 0.00 0.00 0.00 5.28
2662 3546 9.125026 CTTCTTTTGGCATATAAGGTCAAGTAT 57.875 33.333 0.00 0.00 30.63 2.12
2689 3573 4.912586 AGAACTTCTTTCTTCTAAGGGGC 58.087 43.478 0.00 0.00 42.37 5.80
2725 3609 3.469008 TCAGTAAACCGCATCTATGGG 57.531 47.619 0.26 0.26 40.08 4.00
2758 3642 1.078709 GCAAGCGCAGATTCAGTGTA 58.921 50.000 11.47 0.00 27.80 2.90
2899 3783 1.303236 CAACCTCAATCGCCCCACA 60.303 57.895 0.00 0.00 0.00 4.17
3302 4186 3.444034 GCTCCTTCCAAATACTCAAACCC 59.556 47.826 0.00 0.00 0.00 4.11
3344 4228 6.833041 TGGTTCAACTAATAACAAGTCTGGA 58.167 36.000 0.00 0.00 0.00 3.86
3409 4293 8.560124 TGGCCATATACATATATACATCACCA 57.440 34.615 0.00 0.00 0.00 4.17
3479 4363 7.048512 ACATACTATTCTTACCTGCTGTTTCC 58.951 38.462 0.00 0.00 0.00 3.13
3480 4364 4.844884 ACTATTCTTACCTGCTGTTTCCC 58.155 43.478 0.00 0.00 0.00 3.97
3481 4365 4.536489 ACTATTCTTACCTGCTGTTTCCCT 59.464 41.667 0.00 0.00 0.00 4.20
3482 4366 3.876309 TTCTTACCTGCTGTTTCCCTT 57.124 42.857 0.00 0.00 0.00 3.95
3483 4367 4.986054 TTCTTACCTGCTGTTTCCCTTA 57.014 40.909 0.00 0.00 0.00 2.69
3484 4368 4.986054 TCTTACCTGCTGTTTCCCTTAA 57.014 40.909 0.00 0.00 0.00 1.85
3485 4369 5.313280 TCTTACCTGCTGTTTCCCTTAAA 57.687 39.130 0.00 0.00 0.00 1.52
3486 4370 5.697067 TCTTACCTGCTGTTTCCCTTAAAA 58.303 37.500 0.00 0.00 0.00 1.52
3487 4371 6.130569 TCTTACCTGCTGTTTCCCTTAAAAA 58.869 36.000 0.00 0.00 0.00 1.94
3488 4372 6.780522 TCTTACCTGCTGTTTCCCTTAAAAAT 59.219 34.615 0.00 0.00 0.00 1.82
3489 4373 7.945664 TCTTACCTGCTGTTTCCCTTAAAAATA 59.054 33.333 0.00 0.00 0.00 1.40
3490 4374 6.590234 ACCTGCTGTTTCCCTTAAAAATAG 57.410 37.500 0.00 0.00 0.00 1.73
3491 4375 5.047306 ACCTGCTGTTTCCCTTAAAAATAGC 60.047 40.000 11.02 11.02 45.56 2.97
3492 4376 5.400066 TGCTGTTTCCCTTAAAAATAGCC 57.600 39.130 13.84 2.16 45.07 3.93
3493 4377 4.221924 TGCTGTTTCCCTTAAAAATAGCCC 59.778 41.667 13.84 0.00 45.07 5.19
3494 4378 4.382685 GCTGTTTCCCTTAAAAATAGCCCC 60.383 45.833 8.05 0.00 41.95 5.80
3495 4379 4.753186 TGTTTCCCTTAAAAATAGCCCCA 58.247 39.130 0.00 0.00 0.00 4.96
3496 4380 5.346270 TGTTTCCCTTAAAAATAGCCCCAT 58.654 37.500 0.00 0.00 0.00 4.00
3497 4381 5.188751 TGTTTCCCTTAAAAATAGCCCCATG 59.811 40.000 0.00 0.00 0.00 3.66
3498 4382 3.304829 TCCCTTAAAAATAGCCCCATGC 58.695 45.455 0.00 0.00 41.71 4.06
3512 4396 4.651778 GCCCCATGCTATATTTACAGACA 58.348 43.478 0.00 0.00 36.87 3.41
3513 4397 5.070001 GCCCCATGCTATATTTACAGACAA 58.930 41.667 0.00 0.00 36.87 3.18
3514 4398 5.048713 GCCCCATGCTATATTTACAGACAAC 60.049 44.000 0.00 0.00 36.87 3.32
3515 4399 6.061441 CCCCATGCTATATTTACAGACAACA 58.939 40.000 0.00 0.00 0.00 3.33
3516 4400 6.205464 CCCCATGCTATATTTACAGACAACAG 59.795 42.308 0.00 0.00 0.00 3.16
3517 4401 6.205464 CCCATGCTATATTTACAGACAACAGG 59.795 42.308 0.00 0.00 0.00 4.00
3518 4402 6.767902 CCATGCTATATTTACAGACAACAGGT 59.232 38.462 0.00 0.00 0.00 4.00
3519 4403 7.931407 CCATGCTATATTTACAGACAACAGGTA 59.069 37.037 0.00 0.00 0.00 3.08
3520 4404 9.325198 CATGCTATATTTACAGACAACAGGTAA 57.675 33.333 0.00 0.00 0.00 2.85
3521 4405 9.899661 ATGCTATATTTACAGACAACAGGTAAA 57.100 29.630 0.00 0.00 40.17 2.01
3522 4406 9.899661 TGCTATATTTACAGACAACAGGTAAAT 57.100 29.630 12.06 12.06 44.99 1.40
3557 4441 5.702670 TCTGTTAACCTGCAAAAGATCTGAG 59.297 40.000 2.48 0.00 0.00 3.35
3558 4442 5.376625 TGTTAACCTGCAAAAGATCTGAGT 58.623 37.500 2.48 0.00 0.00 3.41
3559 4443 5.239306 TGTTAACCTGCAAAAGATCTGAGTG 59.761 40.000 2.48 0.00 0.00 3.51
3561 4445 4.298103 ACCTGCAAAAGATCTGAGTGAT 57.702 40.909 0.00 0.00 38.27 3.06
3562 4446 5.426689 ACCTGCAAAAGATCTGAGTGATA 57.573 39.130 0.00 0.00 35.14 2.15
3564 4448 5.645497 ACCTGCAAAAGATCTGAGTGATAAC 59.355 40.000 0.00 0.00 35.14 1.89
3565 4449 5.645067 CCTGCAAAAGATCTGAGTGATAACA 59.355 40.000 0.00 0.00 35.14 2.41
3566 4450 6.183360 CCTGCAAAAGATCTGAGTGATAACAG 60.183 42.308 0.00 0.00 35.14 3.16
3568 4452 6.592994 TGCAAAAGATCTGAGTGATAACAGAG 59.407 38.462 0.00 0.00 44.50 3.35
3569 4453 6.815641 GCAAAAGATCTGAGTGATAACAGAGA 59.184 38.462 0.00 0.00 44.50 3.10
3570 4454 7.495279 GCAAAAGATCTGAGTGATAACAGAGAT 59.505 37.037 0.00 0.00 44.50 2.75
3571 4455 8.819015 CAAAAGATCTGAGTGATAACAGAGATG 58.181 37.037 0.00 0.00 44.50 2.90
3572 4456 6.088016 AGATCTGAGTGATAACAGAGATGC 57.912 41.667 0.00 0.00 44.50 3.91
3574 4458 7.003482 AGATCTGAGTGATAACAGAGATGCTA 58.997 38.462 0.00 0.00 44.50 3.49
3575 4459 6.631971 TCTGAGTGATAACAGAGATGCTAG 57.368 41.667 0.00 0.00 38.08 3.42
3582 4469 5.658634 TGATAACAGAGATGCTAGTGGAGTT 59.341 40.000 0.00 0.00 0.00 3.01
3600 4487 6.753897 GGAGTTATTCACTGCAAAGTTTTG 57.246 37.500 0.28 0.28 43.36 2.44
3649 4539 2.101783 CTTATTTGGCCACCAGATGCA 58.898 47.619 3.88 0.00 33.81 3.96
3651 4541 1.350071 ATTTGGCCACCAGATGCAAA 58.650 45.000 3.88 0.00 33.81 3.68
3655 4545 0.681175 GGCCACCAGATGCAAAAACT 59.319 50.000 0.00 0.00 0.00 2.66
3687 4591 4.307443 TCTTCAGTGTATGCGATACAGG 57.693 45.455 8.62 5.79 45.62 4.00
3688 4592 2.509052 TCAGTGTATGCGATACAGGC 57.491 50.000 8.62 1.12 45.62 4.85
3718 4623 9.196552 CATCGATAGTATCAATGCACTCTTAAA 57.803 33.333 10.71 0.00 37.40 1.52
3719 4624 9.764363 ATCGATAGTATCAATGCACTCTTAAAA 57.236 29.630 10.71 0.00 37.40 1.52
3726 4631 9.860898 GTATCAATGCACTCTTAAAATTTTCCT 57.139 29.630 6.72 0.00 0.00 3.36
3727 4632 8.767478 ATCAATGCACTCTTAAAATTTTCCTG 57.233 30.769 6.72 0.00 0.00 3.86
3728 4633 6.646240 TCAATGCACTCTTAAAATTTTCCTGC 59.354 34.615 6.72 8.56 0.00 4.85
3765 4672 5.825593 TGTTTCTGTTTGTCCTATCTCCT 57.174 39.130 0.00 0.00 0.00 3.69
3780 4687 3.920231 TCTCCTATGCACTTGAATGCT 57.080 42.857 0.00 0.00 46.28 3.79
3781 4688 3.538591 TCTCCTATGCACTTGAATGCTG 58.461 45.455 0.00 0.00 46.28 4.41
3782 4689 2.617308 CTCCTATGCACTTGAATGCTGG 59.383 50.000 0.00 0.00 46.28 4.85
3783 4690 2.025981 TCCTATGCACTTGAATGCTGGT 60.026 45.455 0.00 0.00 46.28 4.00
3784 4691 2.756760 CCTATGCACTTGAATGCTGGTT 59.243 45.455 0.00 0.00 46.28 3.67
3786 4693 1.689984 TGCACTTGAATGCTGGTTGA 58.310 45.000 0.00 0.00 46.28 3.18
3834 4741 4.322057 AATGATACTCCCAAGTTGGCTT 57.678 40.909 17.07 4.96 35.79 4.35
3890 4798 9.928618 TTTCCCCTCATTGTTATTATATTGACA 57.071 29.630 0.00 0.00 0.00 3.58
3908 4816 6.682423 TTGACATAGGCATACATTGACTTG 57.318 37.500 0.00 0.00 42.98 3.16
3909 4817 5.744171 TGACATAGGCATACATTGACTTGT 58.256 37.500 0.00 0.00 42.98 3.16
3910 4818 6.179756 TGACATAGGCATACATTGACTTGTT 58.820 36.000 0.00 0.00 42.98 2.83
3911 4819 6.658816 TGACATAGGCATACATTGACTTGTTT 59.341 34.615 0.00 0.00 42.98 2.83
3912 4820 7.176515 TGACATAGGCATACATTGACTTGTTTT 59.823 33.333 0.00 0.00 42.98 2.43
3913 4821 7.895759 ACATAGGCATACATTGACTTGTTTTT 58.104 30.769 0.00 0.00 42.98 1.94
3944 4852 4.042251 GGGACTCCCTGGTCTCTG 57.958 66.667 6.90 0.00 41.34 3.35
3945 4853 2.363172 GGGACTCCCTGGTCTCTGC 61.363 68.421 6.90 0.00 41.34 4.26
3946 4854 1.610673 GGACTCCCTGGTCTCTGCA 60.611 63.158 0.00 0.00 36.55 4.41
3947 4855 0.980231 GGACTCCCTGGTCTCTGCAT 60.980 60.000 0.00 0.00 36.55 3.96
3948 4856 0.463620 GACTCCCTGGTCTCTGCATC 59.536 60.000 0.00 0.00 33.81 3.91
3949 4857 0.252421 ACTCCCTGGTCTCTGCATCA 60.252 55.000 0.00 0.00 0.00 3.07
3950 4858 0.464870 CTCCCTGGTCTCTGCATCAG 59.535 60.000 0.00 0.00 0.00 2.90
3951 4859 0.041684 TCCCTGGTCTCTGCATCAGA 59.958 55.000 0.00 0.00 38.25 3.27
3952 4860 0.907486 CCCTGGTCTCTGCATCAGAA 59.093 55.000 0.00 0.00 40.18 3.02
3953 4861 1.406614 CCCTGGTCTCTGCATCAGAAC 60.407 57.143 4.24 4.24 40.18 3.01
3954 4862 1.638133 CTGGTCTCTGCATCAGAACG 58.362 55.000 6.41 0.00 40.18 3.95
3955 4863 1.203287 CTGGTCTCTGCATCAGAACGA 59.797 52.381 6.41 0.00 40.18 3.85
3956 4864 1.827344 TGGTCTCTGCATCAGAACGAT 59.173 47.619 6.41 0.00 40.18 3.73
3981 4889 3.734463 TGACTTGTCACTTGCCGATTAA 58.266 40.909 0.00 0.00 0.00 1.40
4014 4922 7.997482 TCTTAGCTCTGACTATTGTAATTCGT 58.003 34.615 0.00 0.00 0.00 3.85
4036 4944 1.732259 CCTACAACATTCTGACACGGC 59.268 52.381 0.00 0.00 0.00 5.68
4060 4968 5.669798 ATGCTTTATTTACTCCTGGGGAT 57.330 39.130 0.00 0.00 0.00 3.85
4061 4969 5.466127 TGCTTTATTTACTCCTGGGGATT 57.534 39.130 0.00 0.00 0.00 3.01
4062 4970 5.837829 TGCTTTATTTACTCCTGGGGATTT 58.162 37.500 0.00 0.00 0.00 2.17
4097 5005 4.133820 TGAACTGTGGTCATGTGTAAAGG 58.866 43.478 0.00 0.00 0.00 3.11
4099 5007 2.106511 ACTGTGGTCATGTGTAAAGGCT 59.893 45.455 0.00 0.00 0.00 4.58
4100 5008 3.326588 ACTGTGGTCATGTGTAAAGGCTA 59.673 43.478 0.00 0.00 0.00 3.93
4101 5009 4.019321 ACTGTGGTCATGTGTAAAGGCTAT 60.019 41.667 0.00 0.00 0.00 2.97
4116 5024 4.078639 AGGCTATATGCTGGAGTCAAAC 57.921 45.455 0.00 0.00 42.39 2.93
4118 5026 4.901849 AGGCTATATGCTGGAGTCAAACTA 59.098 41.667 0.00 0.00 42.39 2.24
4127 5035 4.023963 GCTGGAGTCAAACTACTTTGGAAC 60.024 45.833 0.00 0.00 37.87 3.62
4130 5038 4.879545 GGAGTCAAACTACTTTGGAACACA 59.120 41.667 0.00 0.00 39.29 3.72
4138 5046 4.760204 ACTACTTTGGAACACATGTAAGCC 59.240 41.667 0.00 0.15 39.29 4.35
4139 5047 2.890945 ACTTTGGAACACATGTAAGCCC 59.109 45.455 0.00 0.00 39.29 5.19
4181 5089 3.955551 TGGCAGTGCATGTCATAATCATT 59.044 39.130 18.61 0.00 39.05 2.57
4306 5214 1.421646 ACCTTCTCTTGTTCCCCACTG 59.578 52.381 0.00 0.00 0.00 3.66
4328 5236 2.495270 AGTGTGAGTGGCAGTATCAGAG 59.505 50.000 0.00 0.00 0.00 3.35
4337 5245 3.906218 TGGCAGTATCAGAGCAAGGATAT 59.094 43.478 0.00 0.00 0.00 1.63
4339 5247 4.252073 GCAGTATCAGAGCAAGGATATGG 58.748 47.826 0.00 0.00 0.00 2.74
4343 5251 6.435591 CAGTATCAGAGCAAGGATATGGTAGA 59.564 42.308 0.00 0.00 0.00 2.59
4349 5257 4.497516 AGCAAGGATATGGTAGATGGTCT 58.502 43.478 0.00 0.00 0.00 3.85
4467 5375 6.015918 ACCCATCCATTCACATAAGAACAAA 58.984 36.000 0.00 0.00 0.00 2.83
4490 5398 2.976490 ATCCCTGGTGCTGAGGTGC 61.976 63.158 0.00 0.00 0.00 5.01
4491 5399 4.729918 CCCTGGTGCTGAGGTGCC 62.730 72.222 0.00 0.00 0.00 5.01
4538 5449 4.650131 GTGAACCTACTGGACTAGCCTAAT 59.350 45.833 5.06 0.00 37.63 1.73
4539 5450 5.832060 GTGAACCTACTGGACTAGCCTAATA 59.168 44.000 5.06 0.00 37.63 0.98
4540 5451 6.494146 GTGAACCTACTGGACTAGCCTAATAT 59.506 42.308 5.06 0.00 37.63 1.28
4541 5452 6.720288 TGAACCTACTGGACTAGCCTAATATC 59.280 42.308 5.06 0.00 37.63 1.63
4542 5453 5.254901 ACCTACTGGACTAGCCTAATATCG 58.745 45.833 5.06 0.00 37.63 2.92
4543 5454 5.222089 ACCTACTGGACTAGCCTAATATCGT 60.222 44.000 5.06 0.00 37.63 3.73
4544 5455 5.124138 CCTACTGGACTAGCCTAATATCGTG 59.876 48.000 5.06 0.00 37.63 4.35
4545 5456 3.256136 ACTGGACTAGCCTAATATCGTGC 59.744 47.826 5.06 0.00 37.63 5.34
5090 6012 0.482446 ACAGGGAGAAACATTGCCCA 59.518 50.000 0.00 0.00 43.20 5.36
5094 6016 1.560505 GGAGAAACATTGCCCATGGT 58.439 50.000 11.73 0.00 37.17 3.55
5163 6085 0.302890 CGCAAGAATCTCGATGCACC 59.697 55.000 7.17 0.00 43.02 5.01
5178 6100 1.337703 TGCACCTCAGCATTTGTTGTC 59.662 47.619 0.00 0.00 40.11 3.18
5195 6119 4.219033 GTTGTCGTTGCTGTTCCATTTAG 58.781 43.478 0.00 0.00 0.00 1.85
5218 6142 4.122776 CTGTGTGTCTGAATATACCAGGC 58.877 47.826 3.45 3.45 36.83 4.85
5263 6187 5.163248 TGTGGGAATGTAAGTTTCTCTGTCA 60.163 40.000 0.00 0.00 0.00 3.58
5344 6268 6.280855 TCTGTTTCGATAACAGGAGATGAA 57.719 37.500 26.05 12.39 45.66 2.57
5364 6288 7.553402 AGATGAAAAGTGGAGATGAAGAGAATG 59.447 37.037 0.00 0.00 0.00 2.67
5416 6340 1.480954 GCGGAGGAATAGGTTCTGTCA 59.519 52.381 0.00 0.00 34.68 3.58
5448 6372 7.067532 TGCATAATGTACGAACGATTTCTTT 57.932 32.000 0.14 0.00 0.00 2.52
5629 6553 2.771089 TCTGCTCACATCCAAGACAAC 58.229 47.619 0.00 0.00 0.00 3.32
5667 6591 1.539827 CGACAAAAATTCGAGGGCCTT 59.460 47.619 7.89 0.00 38.85 4.35
5675 6599 1.036707 TTCGAGGGCCTTTTTGGTTG 58.963 50.000 7.89 0.00 38.35 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 5.992829 GCAAAATGCCATTTGGATCATATGA 59.007 36.000 8.77 8.10 39.99 2.15
11 12 5.931294 TGCAAAATGCCATTTGGATCATAT 58.069 33.333 8.77 0.00 44.23 1.78
18 19 3.246619 GCAATTGCAAAATGCCATTTGG 58.753 40.909 25.36 1.30 44.23 3.28
38 39 2.669391 GCAGTTCTGGTAGTGCAATTGC 60.669 50.000 23.69 23.69 42.68 3.56
39 40 2.095059 GGCAGTTCTGGTAGTGCAATTG 60.095 50.000 0.00 0.00 44.48 2.32
41 42 1.073763 TGGCAGTTCTGGTAGTGCAAT 59.926 47.619 8.75 0.00 44.48 3.56
43 44 0.035317 CTGGCAGTTCTGGTAGTGCA 59.965 55.000 6.28 0.00 44.48 4.57
44 45 0.321671 TCTGGCAGTTCTGGTAGTGC 59.678 55.000 15.27 0.00 42.47 4.40
45 46 2.625737 CATCTGGCAGTTCTGGTAGTG 58.374 52.381 15.27 0.00 0.00 2.74
48 49 1.833630 CTCCATCTGGCAGTTCTGGTA 59.166 52.381 23.10 14.16 34.44 3.25
56 62 0.747283 GCTGGAACTCCATCTGGCAG 60.747 60.000 8.58 8.58 46.46 4.85
62 68 2.996631 ACTTCATGCTGGAACTCCATC 58.003 47.619 0.00 0.00 46.46 3.51
83 89 7.630944 GCTGGTTGCTACTAACATAGTAAGACT 60.631 40.741 0.00 0.00 40.49 3.24
85 91 6.570692 GCTGGTTGCTACTAACATAGTAAGA 58.429 40.000 0.00 0.00 40.49 2.10
117 123 7.647827 TCCCTCCTTTATGTATTTTGATTGGA 58.352 34.615 0.00 0.00 0.00 3.53
119 125 9.135189 TCATCCCTCCTTTATGTATTTTGATTG 57.865 33.333 0.00 0.00 0.00 2.67
130 136 8.159447 TCTATTTGTCATCATCCCTCCTTTATG 58.841 37.037 0.00 0.00 0.00 1.90
136 142 4.202398 TGCTCTATTTGTCATCATCCCTCC 60.202 45.833 0.00 0.00 0.00 4.30
176 578 1.667724 GTGATACATGTGGCACTCAGC 59.332 52.381 19.83 4.57 44.65 4.26
177 579 2.976589 TGTGATACATGTGGCACTCAG 58.023 47.619 24.19 10.76 34.48 3.35
269 688 3.598715 TGTGCTGGTGCTTGCAGC 61.599 61.111 16.65 16.65 42.82 5.25
273 692 0.029834 GTGAAGTGTGCTGGTGCTTG 59.970 55.000 0.00 0.00 40.48 4.01
274 693 0.394216 TGTGAAGTGTGCTGGTGCTT 60.394 50.000 0.00 0.00 40.48 3.91
275 694 0.816825 CTGTGAAGTGTGCTGGTGCT 60.817 55.000 0.00 0.00 40.48 4.40
276 695 1.650912 CTGTGAAGTGTGCTGGTGC 59.349 57.895 0.00 0.00 40.20 5.01
277 696 1.789078 GCCTGTGAAGTGTGCTGGTG 61.789 60.000 0.00 0.00 0.00 4.17
278 697 1.526917 GCCTGTGAAGTGTGCTGGT 60.527 57.895 0.00 0.00 0.00 4.00
279 698 2.263741 GGCCTGTGAAGTGTGCTGG 61.264 63.158 0.00 0.00 0.00 4.85
280 699 2.263741 GGGCCTGTGAAGTGTGCTG 61.264 63.158 0.84 0.00 0.00 4.41
281 700 2.113986 GGGCCTGTGAAGTGTGCT 59.886 61.111 0.84 0.00 0.00 4.40
282 701 1.968540 GAGGGCCTGTGAAGTGTGC 60.969 63.158 12.95 0.00 0.00 4.57
283 702 0.037303 ATGAGGGCCTGTGAAGTGTG 59.963 55.000 12.95 0.00 0.00 3.82
284 703 0.326264 GATGAGGGCCTGTGAAGTGT 59.674 55.000 12.95 0.00 0.00 3.55
315 734 6.403866 ACTATGCAAGTGATGTTTTTGGAA 57.596 33.333 0.00 0.00 36.93 3.53
397 820 2.481952 TGTTTTTGCAAAGTGTGTTGGC 59.518 40.909 12.41 0.00 0.00 4.52
398 821 4.462307 GTTGTTTTTGCAAAGTGTGTTGG 58.538 39.130 12.41 0.00 0.00 3.77
400 823 3.500299 GGGTTGTTTTTGCAAAGTGTGTT 59.500 39.130 12.41 0.00 0.00 3.32
402 825 2.418280 GGGGTTGTTTTTGCAAAGTGTG 59.582 45.455 12.41 0.00 0.00 3.82
413 837 1.111277 GACAGTGCTGGGGTTGTTTT 58.889 50.000 4.11 0.00 34.19 2.43
425 849 1.002430 TGGAGATCACAAGGACAGTGC 59.998 52.381 0.00 0.00 36.93 4.40
458 1272 1.824230 TGGATGCTTGGTTATTGTGCC 59.176 47.619 0.00 0.00 0.00 5.01
468 1282 2.353610 GGCCCTTGTGGATGCTTGG 61.354 63.158 0.00 0.00 35.39 3.61
481 1295 0.690744 AACTTTTGCAACCAGGCCCT 60.691 50.000 0.00 0.00 0.00 5.19
497 1311 6.528537 TGTGGAATAATAAAGCATGCAACT 57.471 33.333 21.98 5.92 0.00 3.16
498 1312 7.331687 ACTTTGTGGAATAATAAAGCATGCAAC 59.668 33.333 21.98 1.26 34.38 4.17
500 1314 6.934056 ACTTTGTGGAATAATAAAGCATGCA 58.066 32.000 21.98 0.00 34.38 3.96
501 1315 6.476706 GGACTTTGTGGAATAATAAAGCATGC 59.523 38.462 10.51 10.51 34.38 4.06
568 1382 4.649674 TCTCTCTCTCTACCTCTCTCTGTC 59.350 50.000 0.00 0.00 0.00 3.51
592 1406 2.204721 TCTCCCACCCTCCCCCTA 60.205 66.667 0.00 0.00 0.00 3.53
593 1407 3.700350 CTCTCCCACCCTCCCCCT 61.700 72.222 0.00 0.00 0.00 4.79
683 1509 4.434354 AGGCCGGAGCTCGTCTCT 62.434 66.667 5.05 0.00 41.60 3.10
706 1532 5.182190 GGGATTCCTTCTTGTTCTTGTTCTC 59.818 44.000 2.01 0.00 0.00 2.87
745 1571 0.880718 CTCCTCCGCCCGCTTTATTC 60.881 60.000 0.00 0.00 0.00 1.75
748 1574 2.363276 TCTCCTCCGCCCGCTTTA 60.363 61.111 0.00 0.00 0.00 1.85
749 1575 4.083862 GTCTCCTCCGCCCGCTTT 62.084 66.667 0.00 0.00 0.00 3.51
941 1781 7.164335 GCGACAGTTAAAGAAGAAGAAAACAAG 59.836 37.037 0.00 0.00 0.00 3.16
959 1799 2.356313 CACAGAGCGGCGACAGTT 60.356 61.111 12.98 0.00 0.00 3.16
969 1809 0.937304 TTCTCAACAACGCACAGAGC 59.063 50.000 0.00 0.00 40.87 4.09
970 1810 1.070309 GCTTCTCAACAACGCACAGAG 60.070 52.381 0.00 0.00 0.00 3.35
971 1811 0.937304 GCTTCTCAACAACGCACAGA 59.063 50.000 0.00 0.00 0.00 3.41
973 1813 0.937304 GAGCTTCTCAACAACGCACA 59.063 50.000 0.00 0.00 0.00 4.57
975 1815 1.599071 CAAGAGCTTCTCAACAACGCA 59.401 47.619 0.00 0.00 32.06 5.24
976 1816 1.867233 TCAAGAGCTTCTCAACAACGC 59.133 47.619 0.00 0.00 32.06 4.84
1290 2135 1.228429 GCAAACCAGCCACCTACCA 60.228 57.895 0.00 0.00 0.00 3.25
1341 2188 3.162202 ACTGCAGACGATGAATCTCTG 57.838 47.619 23.35 11.98 36.27 3.35
1368 2215 4.450082 TTAGTGCTGAAATCACTAGCGA 57.550 40.909 3.54 0.00 44.76 4.93
1370 2217 5.220931 CCCAATTAGTGCTGAAATCACTAGC 60.221 44.000 3.54 0.00 44.76 3.42
1415 2265 3.327600 TGGATGTGCACAACCAGAG 57.672 52.632 36.80 0.00 42.77 3.35
1433 2283 5.441718 TTCTATCAGCCAGGAACATCTTT 57.558 39.130 0.00 0.00 0.00 2.52
1476 2327 3.779444 TGCAAATTATTACCCACCACCA 58.221 40.909 0.00 0.00 0.00 4.17
1480 2331 6.724893 ATACCTTGCAAATTATTACCCACC 57.275 37.500 0.00 0.00 0.00 4.61
1481 2332 6.983890 CCAATACCTTGCAAATTATTACCCAC 59.016 38.462 0.00 0.00 0.00 4.61
1482 2333 6.897966 TCCAATACCTTGCAAATTATTACCCA 59.102 34.615 0.00 0.00 0.00 4.51
1483 2334 7.354751 TCCAATACCTTGCAAATTATTACCC 57.645 36.000 0.00 0.00 0.00 3.69
1484 2335 8.421002 ACATCCAATACCTTGCAAATTATTACC 58.579 33.333 0.00 0.00 0.00 2.85
1485 2336 9.816354 AACATCCAATACCTTGCAAATTATTAC 57.184 29.630 0.00 0.00 0.00 1.89
1486 2337 9.814899 CAACATCCAATACCTTGCAAATTATTA 57.185 29.630 0.00 0.00 0.00 0.98
1487 2338 8.320617 ACAACATCCAATACCTTGCAAATTATT 58.679 29.630 0.00 3.59 0.00 1.40
1488 2339 7.850193 ACAACATCCAATACCTTGCAAATTAT 58.150 30.769 0.00 0.00 0.00 1.28
1564 2415 1.136828 ACCAAGAAGCACCCAGTACA 58.863 50.000 0.00 0.00 0.00 2.90
1567 2418 0.109342 CTCACCAAGAAGCACCCAGT 59.891 55.000 0.00 0.00 0.00 4.00
1569 2420 0.108585 GACTCACCAAGAAGCACCCA 59.891 55.000 0.00 0.00 0.00 4.51
1571 2422 2.191128 ATGACTCACCAAGAAGCACC 57.809 50.000 0.00 0.00 0.00 5.01
1615 2466 7.656707 AAAACTTAGCAAGCATGGTTAATTG 57.343 32.000 10.31 0.00 38.46 2.32
1616 2467 8.034804 CCTAAAACTTAGCAAGCATGGTTAATT 58.965 33.333 10.31 1.65 38.46 1.40
1868 2723 7.461416 GCTGTGCACGATGATAAAACAAAATAC 60.461 37.037 13.13 0.00 0.00 1.89
1885 2740 4.826600 GCTTTACAGCTGTGCACG 57.173 55.556 29.57 13.94 43.51 5.34
1916 2774 7.541162 TCAATCAATGACATCAAATCCTGAAC 58.459 34.615 0.00 0.00 32.99 3.18
1932 2790 5.710513 TGGTTCTCCAAACTCAATCAATG 57.289 39.130 0.00 0.00 41.25 2.82
1961 2819 9.955208 CTGTGCACAATGATAAACAATATATGT 57.045 29.630 21.98 0.00 46.82 2.29
1962 2820 9.955208 ACTGTGCACAATGATAAACAATATATG 57.045 29.630 21.98 4.78 0.00 1.78
1964 2822 9.786105 CAACTGTGCACAATGATAAACAATATA 57.214 29.630 21.98 0.00 0.00 0.86
1967 2825 6.514947 ACAACTGTGCACAATGATAAACAAT 58.485 32.000 29.12 9.56 0.00 2.71
2004 2862 5.878332 ACCAAAGGAAAGCTTTTTGTTTG 57.122 34.783 22.57 22.57 31.55 2.93
2005 2863 8.574251 AATTACCAAAGGAAAGCTTTTTGTTT 57.426 26.923 14.05 10.31 31.55 2.83
2008 2866 9.325198 AGTTAATTACCAAAGGAAAGCTTTTTG 57.675 29.630 14.05 13.43 0.00 2.44
2009 2867 9.325198 CAGTTAATTACCAAAGGAAAGCTTTTT 57.675 29.630 14.05 1.29 0.00 1.94
2015 2873 7.393515 AGCCTACAGTTAATTACCAAAGGAAAG 59.606 37.037 0.00 0.00 0.00 2.62
2016 2874 7.175990 CAGCCTACAGTTAATTACCAAAGGAAA 59.824 37.037 0.00 0.00 0.00 3.13
2019 2877 5.357032 CCAGCCTACAGTTAATTACCAAAGG 59.643 44.000 0.00 0.00 0.00 3.11
2028 2886 5.440610 CCAATTCTCCAGCCTACAGTTAAT 58.559 41.667 0.00 0.00 0.00 1.40
2073 2932 6.403636 GCTGAACAACTAACCATCCAATACTG 60.404 42.308 0.00 0.00 0.00 2.74
2079 2943 3.788227 AGCTGAACAACTAACCATCCA 57.212 42.857 0.00 0.00 0.00 3.41
2274 3138 8.491134 ACAAGTGATATACCATAACTTTAGGCA 58.509 33.333 0.00 0.00 0.00 4.75
2300 3164 3.123050 GCGTATCATGCAGTGTATGACA 58.877 45.455 23.86 11.97 37.38 3.58
2301 3165 3.123050 TGCGTATCATGCAGTGTATGAC 58.877 45.455 23.86 13.17 37.38 3.06
2302 3166 3.451141 TGCGTATCATGCAGTGTATGA 57.549 42.857 23.65 23.65 34.76 2.15
2303 3167 3.059393 CCTTGCGTATCATGCAGTGTATG 60.059 47.826 14.46 14.46 41.69 2.39
2304 3168 3.133691 CCTTGCGTATCATGCAGTGTAT 58.866 45.455 0.00 0.00 41.69 2.29
2305 3169 2.549926 CCTTGCGTATCATGCAGTGTA 58.450 47.619 0.00 0.00 41.69 2.90
2306 3170 1.372582 CCTTGCGTATCATGCAGTGT 58.627 50.000 0.00 0.00 41.69 3.55
2307 3171 0.028505 GCCTTGCGTATCATGCAGTG 59.971 55.000 0.00 0.00 41.69 3.66
2308 3172 0.107508 AGCCTTGCGTATCATGCAGT 60.108 50.000 0.00 0.00 41.69 4.40
2309 3173 1.019673 AAGCCTTGCGTATCATGCAG 58.980 50.000 0.00 0.00 41.69 4.41
2312 3176 2.187707 GCAAAAGCCTTGCGTATCATG 58.812 47.619 5.45 0.00 35.58 3.07
2485 3369 7.496920 TCACCTGATCAGAATAGTTTATGCAAG 59.503 37.037 24.62 3.76 0.00 4.01
2495 3379 5.541953 TGGACATCACCTGATCAGAATAG 57.458 43.478 24.62 9.63 31.21 1.73
2599 3483 3.172106 TGCTTTCCCCGGTCCACA 61.172 61.111 0.00 0.00 0.00 4.17
2608 3492 0.326264 TCTCAAGGCTCTGCTTTCCC 59.674 55.000 0.00 0.00 0.00 3.97
2662 3546 6.014156 CCCTTAGAAGAAAGAAGTTCTCAGGA 60.014 42.308 5.70 0.00 46.36 3.86
2689 3573 3.861276 ACTGATGCACATTCATGGTTG 57.139 42.857 0.00 0.00 0.00 3.77
2698 3582 1.819928 TGCGGTTTACTGATGCACAT 58.180 45.000 0.00 0.00 0.00 3.21
2725 3609 2.286067 GCGCTTGCACTCATCATAGAAC 60.286 50.000 0.00 0.00 38.92 3.01
2758 3642 8.190784 CAGTCTGTAAATGTTTTCCAGAGTTTT 58.809 33.333 10.19 0.00 32.74 2.43
2899 3783 1.885049 ACCCAGTATCAGGCACATCT 58.115 50.000 0.00 0.00 0.00 2.90
3302 4186 1.421382 CAGGCAACATTTTCCTTGCG 58.579 50.000 0.00 0.00 43.17 4.85
3344 4228 7.231317 CCCATGTTAGTTATGCATACCTTGAAT 59.769 37.037 9.24 0.00 0.00 2.57
3385 4269 9.440773 CATGGTGATGTATATATGTATATGGCC 57.559 37.037 0.00 0.00 31.69 5.36
3409 4293 1.355720 AGGGAAACAGCAGGTAAGCAT 59.644 47.619 0.00 0.00 36.85 3.79
3466 4350 6.152154 GCTATTTTTAAGGGAAACAGCAGGTA 59.848 38.462 0.00 0.00 31.75 3.08
3467 4351 5.047306 GCTATTTTTAAGGGAAACAGCAGGT 60.047 40.000 0.00 0.00 31.75 4.00
3468 4352 5.410924 GCTATTTTTAAGGGAAACAGCAGG 58.589 41.667 0.00 0.00 31.75 4.85
3470 4354 4.221924 GGGCTATTTTTAAGGGAAACAGCA 59.778 41.667 4.32 0.00 32.47 4.41
3471 4355 4.382685 GGGGCTATTTTTAAGGGAAACAGC 60.383 45.833 0.00 0.00 0.00 4.40
3472 4356 4.775253 TGGGGCTATTTTTAAGGGAAACAG 59.225 41.667 0.00 0.00 0.00 3.16
3474 4358 5.670485 CATGGGGCTATTTTTAAGGGAAAC 58.330 41.667 0.00 0.00 0.00 2.78
3476 4360 3.709141 GCATGGGGCTATTTTTAAGGGAA 59.291 43.478 0.00 0.00 40.25 3.97
3490 4374 4.651778 TGTCTGTAAATATAGCATGGGGC 58.348 43.478 0.00 0.00 45.30 5.80
3491 4375 6.061441 TGTTGTCTGTAAATATAGCATGGGG 58.939 40.000 0.00 0.00 0.00 4.96
3492 4376 6.205464 CCTGTTGTCTGTAAATATAGCATGGG 59.795 42.308 0.00 0.00 0.00 4.00
3493 4377 6.767902 ACCTGTTGTCTGTAAATATAGCATGG 59.232 38.462 0.00 0.00 0.00 3.66
3494 4378 7.792374 ACCTGTTGTCTGTAAATATAGCATG 57.208 36.000 0.00 0.00 0.00 4.06
3495 4379 9.899661 TTTACCTGTTGTCTGTAAATATAGCAT 57.100 29.630 0.00 0.00 0.00 3.79
3496 4380 9.899661 ATTTACCTGTTGTCTGTAAATATAGCA 57.100 29.630 5.35 0.00 31.10 3.49
3504 4388 9.357161 ACCAAAATATTTACCTGTTGTCTGTAA 57.643 29.630 0.01 0.00 0.00 2.41
3505 4389 8.927675 ACCAAAATATTTACCTGTTGTCTGTA 57.072 30.769 0.01 0.00 0.00 2.74
3506 4390 7.833285 ACCAAAATATTTACCTGTTGTCTGT 57.167 32.000 0.01 0.00 0.00 3.41
3507 4391 8.141268 ACAACCAAAATATTTACCTGTTGTCTG 58.859 33.333 20.46 9.84 40.53 3.51
3508 4392 8.245195 ACAACCAAAATATTTACCTGTTGTCT 57.755 30.769 20.46 8.91 40.53 3.41
3510 4394 8.141268 CAGACAACCAAAATATTTACCTGTTGT 58.859 33.333 23.36 23.36 45.34 3.32
3511 4395 8.141268 ACAGACAACCAAAATATTTACCTGTTG 58.859 33.333 19.65 19.65 38.18 3.33
3512 4396 8.245195 ACAGACAACCAAAATATTTACCTGTT 57.755 30.769 0.01 0.70 0.00 3.16
3513 4397 7.833285 ACAGACAACCAAAATATTTACCTGT 57.167 32.000 0.01 3.37 0.00 4.00
3516 4400 9.414295 GGTTAACAGACAACCAAAATATTTACC 57.586 33.333 8.10 0.00 44.12 2.85
3519 4403 7.655732 GCAGGTTAACAGACAACCAAAATATTT 59.344 33.333 8.10 0.00 46.60 1.40
3520 4404 7.151976 GCAGGTTAACAGACAACCAAAATATT 58.848 34.615 8.10 0.00 46.60 1.28
3521 4405 6.266558 TGCAGGTTAACAGACAACCAAAATAT 59.733 34.615 8.10 0.00 46.60 1.28
3522 4406 5.594725 TGCAGGTTAACAGACAACCAAAATA 59.405 36.000 8.10 0.00 46.60 1.40
3523 4407 4.404073 TGCAGGTTAACAGACAACCAAAAT 59.596 37.500 8.10 0.00 46.60 1.82
3524 4408 3.764434 TGCAGGTTAACAGACAACCAAAA 59.236 39.130 8.10 0.00 46.60 2.44
3557 4441 5.068460 ACTCCACTAGCATCTCTGTTATCAC 59.932 44.000 0.00 0.00 0.00 3.06
3558 4442 5.204292 ACTCCACTAGCATCTCTGTTATCA 58.796 41.667 0.00 0.00 0.00 2.15
3559 4443 5.782893 ACTCCACTAGCATCTCTGTTATC 57.217 43.478 0.00 0.00 0.00 1.75
3561 4445 7.342026 TGAATAACTCCACTAGCATCTCTGTTA 59.658 37.037 0.00 0.00 0.00 2.41
3562 4446 6.155221 TGAATAACTCCACTAGCATCTCTGTT 59.845 38.462 0.00 0.00 0.00 3.16
3564 4448 5.982516 GTGAATAACTCCACTAGCATCTCTG 59.017 44.000 0.00 0.00 0.00 3.35
3565 4449 5.896678 AGTGAATAACTCCACTAGCATCTCT 59.103 40.000 0.00 0.00 41.38 3.10
3566 4450 5.982516 CAGTGAATAACTCCACTAGCATCTC 59.017 44.000 0.00 0.00 41.26 2.75
3568 4452 4.509600 GCAGTGAATAACTCCACTAGCATC 59.490 45.833 0.00 0.00 41.26 3.91
3569 4453 4.080919 TGCAGTGAATAACTCCACTAGCAT 60.081 41.667 0.00 0.00 41.26 3.79
3570 4454 3.260632 TGCAGTGAATAACTCCACTAGCA 59.739 43.478 0.00 0.00 41.26 3.49
3571 4455 3.861840 TGCAGTGAATAACTCCACTAGC 58.138 45.455 0.00 0.00 41.26 3.42
3572 4456 5.934625 ACTTTGCAGTGAATAACTCCACTAG 59.065 40.000 0.00 0.00 41.26 2.57
3574 4458 4.718961 ACTTTGCAGTGAATAACTCCACT 58.281 39.130 0.00 0.00 43.73 4.00
3575 4459 5.438761 AACTTTGCAGTGAATAACTCCAC 57.561 39.130 0.00 0.00 36.83 4.02
3618 4505 6.665680 TGGTGGCCAAATAAGTGTTGTATATT 59.334 34.615 7.24 0.00 0.00 1.28
3619 4506 6.191315 TGGTGGCCAAATAAGTGTTGTATAT 58.809 36.000 7.24 0.00 0.00 0.86
3620 4507 5.571285 TGGTGGCCAAATAAGTGTTGTATA 58.429 37.500 7.24 0.00 0.00 1.47
3621 4508 4.411927 TGGTGGCCAAATAAGTGTTGTAT 58.588 39.130 7.24 0.00 0.00 2.29
3632 4522 1.350071 TTTGCATCTGGTGGCCAAAT 58.650 45.000 7.24 0.00 30.80 2.32
3637 4527 1.787012 CAGTTTTTGCATCTGGTGGC 58.213 50.000 0.00 0.00 0.00 5.01
3655 4545 6.238184 CGCATACACTGAAGAAAATATCTGCA 60.238 38.462 0.00 0.00 41.76 4.41
3662 4552 6.258727 CCTGTATCGCATACACTGAAGAAAAT 59.741 38.462 5.28 0.00 40.60 1.82
3666 4570 3.490933 GCCTGTATCGCATACACTGAAGA 60.491 47.826 5.28 0.00 40.60 2.87
3667 4571 2.797156 GCCTGTATCGCATACACTGAAG 59.203 50.000 5.28 0.00 40.60 3.02
3693 4597 9.764363 TTTTAAGAGTGCATTGATACTATCGAT 57.236 29.630 2.16 2.16 33.63 3.59
3694 4598 9.764363 ATTTTAAGAGTGCATTGATACTATCGA 57.236 29.630 0.00 0.00 0.00 3.59
3718 4623 3.056607 CGTTCTGGGAATGCAGGAAAATT 60.057 43.478 0.00 0.00 0.00 1.82
3719 4624 2.493278 CGTTCTGGGAATGCAGGAAAAT 59.507 45.455 0.00 0.00 0.00 1.82
3724 4629 0.962356 AAGCGTTCTGGGAATGCAGG 60.962 55.000 21.37 0.00 34.74 4.85
3726 4631 0.537143 ACAAGCGTTCTGGGAATGCA 60.537 50.000 21.37 0.00 34.74 3.96
3727 4632 0.598065 AACAAGCGTTCTGGGAATGC 59.402 50.000 14.36 14.36 0.00 3.56
3728 4633 2.554032 AGAAACAAGCGTTCTGGGAATG 59.446 45.455 0.00 0.00 32.91 2.67
3809 4716 5.044846 AGCCAACTTGGGAGTATCATTAAGT 60.045 40.000 9.95 0.00 38.19 2.24
3822 4729 2.296190 GGTTGACTTAAGCCAACTTGGG 59.704 50.000 27.02 0.00 41.57 4.12
3834 4741 8.347035 GCTTAGTTAACACATTTGGTTGACTTA 58.653 33.333 8.61 0.00 40.77 2.24
3927 4835 2.363172 GCAGAGACCAGGGAGTCCC 61.363 68.421 21.81 21.81 45.90 4.46
3928 4836 0.980231 ATGCAGAGACCAGGGAGTCC 60.980 60.000 0.00 0.00 37.49 3.85
3929 4837 0.463620 GATGCAGAGACCAGGGAGTC 59.536 60.000 0.00 0.00 37.01 3.36
3930 4838 0.252421 TGATGCAGAGACCAGGGAGT 60.252 55.000 0.00 0.00 0.00 3.85
3931 4839 0.464870 CTGATGCAGAGACCAGGGAG 59.535 60.000 0.00 0.00 32.44 4.30
3932 4840 0.041684 TCTGATGCAGAGACCAGGGA 59.958 55.000 0.00 0.00 35.39 4.20
3933 4841 0.907486 TTCTGATGCAGAGACCAGGG 59.093 55.000 0.00 0.00 41.75 4.45
3934 4842 1.738365 CGTTCTGATGCAGAGACCAGG 60.738 57.143 0.00 0.00 41.75 4.45
3935 4843 1.203287 TCGTTCTGATGCAGAGACCAG 59.797 52.381 0.00 0.00 41.75 4.00
3936 4844 1.256812 TCGTTCTGATGCAGAGACCA 58.743 50.000 0.00 0.00 41.75 4.02
3937 4845 2.593346 ATCGTTCTGATGCAGAGACC 57.407 50.000 0.00 0.00 41.75 3.85
3945 4853 6.867052 TGACAAGTCATGCATCGTTCTGATG 61.867 44.000 0.00 0.59 44.78 3.07
3946 4854 3.603532 ACAAGTCATGCATCGTTCTGAT 58.396 40.909 0.00 0.00 38.01 2.90
3947 4855 2.995939 GACAAGTCATGCATCGTTCTGA 59.004 45.455 0.00 0.00 0.00 3.27
3948 4856 2.738314 TGACAAGTCATGCATCGTTCTG 59.262 45.455 0.00 0.00 34.14 3.02
3949 4857 2.738846 GTGACAAGTCATGCATCGTTCT 59.261 45.455 6.15 0.00 42.18 3.01
3950 4858 2.738846 AGTGACAAGTCATGCATCGTTC 59.261 45.455 6.15 0.00 42.18 3.95
3951 4859 2.771089 AGTGACAAGTCATGCATCGTT 58.229 42.857 6.15 0.00 42.18 3.85
3952 4860 2.462456 AGTGACAAGTCATGCATCGT 57.538 45.000 6.15 0.00 42.18 3.73
3953 4861 2.726989 GCAAGTGACAAGTCATGCATCG 60.727 50.000 18.75 0.00 42.23 3.84
3954 4862 2.415090 GGCAAGTGACAAGTCATGCATC 60.415 50.000 22.76 9.10 43.61 3.91
3955 4863 1.542915 GGCAAGTGACAAGTCATGCAT 59.457 47.619 22.76 0.00 43.61 3.96
3956 4864 0.953727 GGCAAGTGACAAGTCATGCA 59.046 50.000 22.76 0.00 43.61 3.96
3957 4865 0.110056 CGGCAAGTGACAAGTCATGC 60.110 55.000 16.50 16.50 42.04 4.06
3958 4866 1.511850 TCGGCAAGTGACAAGTCATG 58.488 50.000 6.15 3.03 42.18 3.07
3959 4867 2.479566 ATCGGCAAGTGACAAGTCAT 57.520 45.000 6.15 0.00 42.18 3.06
3960 4868 2.254546 AATCGGCAAGTGACAAGTCA 57.745 45.000 0.00 0.00 37.24 3.41
3961 4869 4.742438 TTTAATCGGCAAGTGACAAGTC 57.258 40.909 0.00 0.00 0.00 3.01
3962 4870 5.705609 ATTTTAATCGGCAAGTGACAAGT 57.294 34.783 0.00 0.00 0.00 3.16
3963 4871 7.305474 ACTAATTTTAATCGGCAAGTGACAAG 58.695 34.615 0.00 0.00 0.00 3.16
3964 4872 7.209471 ACTAATTTTAATCGGCAAGTGACAA 57.791 32.000 0.00 0.00 0.00 3.18
4007 4915 6.103997 GTCAGAATGTTGTAGGGACGAATTA 58.896 40.000 0.00 0.00 37.40 1.40
4014 4922 2.028476 CCGTGTCAGAATGTTGTAGGGA 60.028 50.000 0.00 0.00 37.40 4.20
4036 4944 5.200483 TCCCCAGGAGTAAATAAAGCATTG 58.800 41.667 0.00 0.00 0.00 2.82
4097 5005 5.848406 AGTAGTTTGACTCCAGCATATAGC 58.152 41.667 0.00 0.00 46.19 2.97
4099 5007 7.047891 CCAAAGTAGTTTGACTCCAGCATATA 58.952 38.462 22.09 0.00 45.22 0.86
4100 5008 5.882557 CCAAAGTAGTTTGACTCCAGCATAT 59.117 40.000 22.09 0.00 45.22 1.78
4101 5009 5.012664 TCCAAAGTAGTTTGACTCCAGCATA 59.987 40.000 22.09 0.00 45.22 3.14
4116 5024 4.156008 GGGCTTACATGTGTTCCAAAGTAG 59.844 45.833 9.11 0.00 0.00 2.57
4118 5026 2.890945 GGGCTTACATGTGTTCCAAAGT 59.109 45.455 9.11 0.00 0.00 2.66
4127 5035 3.530265 ATTGCAATGGGCTTACATGTG 57.470 42.857 12.09 0.00 45.15 3.21
4130 5038 5.658190 ACTAGAAATTGCAATGGGCTTACAT 59.342 36.000 13.82 0.00 45.15 2.29
4138 5046 6.183360 TGCCATAGAACTAGAAATTGCAATGG 60.183 38.462 13.82 7.59 34.58 3.16
4139 5047 6.798482 TGCCATAGAACTAGAAATTGCAATG 58.202 36.000 13.82 2.17 0.00 2.82
4175 5083 4.549668 ACACCATTATGCCCTCAATGATT 58.450 39.130 0.00 0.00 34.69 2.57
4181 5089 3.521531 TGTCTAACACCATTATGCCCTCA 59.478 43.478 0.00 0.00 0.00 3.86
4306 5214 2.493675 TCTGATACTGCCACTCACACTC 59.506 50.000 0.00 0.00 0.00 3.51
4328 5236 4.573900 CAGACCATCTACCATATCCTTGC 58.426 47.826 0.00 0.00 0.00 4.01
4337 5245 3.197766 CCACTTTAGCAGACCATCTACCA 59.802 47.826 0.00 0.00 0.00 3.25
4339 5247 4.442192 CCTCCACTTTAGCAGACCATCTAC 60.442 50.000 0.00 0.00 0.00 2.59
4343 5251 1.561542 CCCTCCACTTTAGCAGACCAT 59.438 52.381 0.00 0.00 0.00 3.55
4349 5257 0.118346 TCCTCCCCTCCACTTTAGCA 59.882 55.000 0.00 0.00 0.00 3.49
4467 5375 0.037303 CTCAGCACCAGGGATGTTGT 59.963 55.000 0.00 0.00 30.95 3.32
4490 5398 0.462789 GATTCCCATGGCAAGCAAGG 59.537 55.000 6.09 0.00 0.00 3.61
4491 5399 0.462789 GGATTCCCATGGCAAGCAAG 59.537 55.000 5.92 0.00 0.00 4.01
4515 5424 2.458620 AGGCTAGTCCAGTAGGTTCAC 58.541 52.381 6.07 0.00 37.29 3.18
4688 5605 8.781196 CCATCCTCTCATTGACTAATAAACATG 58.219 37.037 0.00 0.00 0.00 3.21
4689 5606 8.497745 ACCATCCTCTCATTGACTAATAAACAT 58.502 33.333 0.00 0.00 0.00 2.71
4690 5607 7.770433 CACCATCCTCTCATTGACTAATAAACA 59.230 37.037 0.00 0.00 0.00 2.83
4691 5608 7.987458 TCACCATCCTCTCATTGACTAATAAAC 59.013 37.037 0.00 0.00 0.00 2.01
4692 5609 7.987458 GTCACCATCCTCTCATTGACTAATAAA 59.013 37.037 0.00 0.00 32.38 1.40
4778 5697 2.400962 TTAGTCGCAGCCGCTCGTA 61.401 57.895 10.60 0.00 35.30 3.43
5090 6012 3.679389 ACAAGCTCGAATTCAGAACCAT 58.321 40.909 6.22 0.00 0.00 3.55
5094 6016 3.649073 TCGAACAAGCTCGAATTCAGAA 58.351 40.909 6.22 0.00 44.49 3.02
5163 6085 2.046313 GCAACGACAACAAATGCTGAG 58.954 47.619 0.00 0.00 34.29 3.35
5195 6119 4.122776 CCTGGTATATTCAGACACACAGC 58.877 47.826 7.39 0.00 34.36 4.40
5218 6142 0.823460 GGCCACCACCCAATAACATG 59.177 55.000 0.00 0.00 0.00 3.21
5263 6187 5.132312 ACCAGGATCAAGATGTCATGATTCT 59.868 40.000 0.00 3.75 39.68 2.40
5344 6268 5.874093 ACACATTCTCTTCATCTCCACTTT 58.126 37.500 0.00 0.00 0.00 2.66
5364 6288 4.753107 TCCGGTTTATCAAAACAGAGACAC 59.247 41.667 0.00 0.00 45.68 3.67
5416 6340 7.523219 TCGTTCGTACATTATGCAATCTTTTT 58.477 30.769 0.00 0.00 0.00 1.94
5448 6372 5.401550 CAGTTTTGCAAGAAAAGACTGACA 58.598 37.500 14.48 0.00 34.10 3.58
5589 6513 5.399596 GCAGAAAATCGTTCTTGTTTCTTCC 59.600 40.000 0.00 0.00 38.05 3.46
5629 6553 4.657055 TGTCGTTGTTTGTGATGTTGAAG 58.343 39.130 0.00 0.00 0.00 3.02
5667 6591 5.105716 TGTTCTGAATTTCCGTCAACCAAAA 60.106 36.000 0.00 0.00 0.00 2.44
5675 6599 3.872560 AACGTGTTCTGAATTTCCGTC 57.127 42.857 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.