Multiple sequence alignment - TraesCS6A01G395900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G395900 chr6A 100.000 2729 0 0 1 2729 608402304 608399576 0.000000e+00 5040.0
1 TraesCS6A01G395900 chr6A 76.432 454 94 12 1047 1497 608505651 608505208 1.630000e-57 233.0
2 TraesCS6A01G395900 chr6B 88.170 1361 141 12 897 2246 703413869 703412518 0.000000e+00 1604.0
3 TraesCS6A01G395900 chr6B 92.632 760 45 5 1495 2246 703486937 703486181 0.000000e+00 1083.0
4 TraesCS6A01G395900 chr6B 86.895 496 51 6 2246 2728 703406806 703406312 6.650000e-151 544.0
5 TraesCS6A01G395900 chr6B 86.858 487 53 3 2246 2721 703480532 703480046 4.000000e-148 534.0
6 TraesCS6A01G395900 chr6B 71.474 631 133 35 288 887 127016179 127015565 1.030000e-24 124.0
7 TraesCS6A01G395900 chr6B 88.158 76 6 3 822 896 134094475 134094548 1.350000e-13 87.9
8 TraesCS6A01G395900 chr6D 84.933 823 113 9 9 824 143357187 143356369 0.000000e+00 822.0
9 TraesCS6A01G395900 chr6D 75.915 328 68 10 1172 1497 461689714 461689396 1.010000e-34 158.0
10 TraesCS6A01G395900 chr5D 84.922 829 108 14 1 820 452558596 452557776 0.000000e+00 822.0
11 TraesCS6A01G395900 chr5D 77.790 896 157 20 14 897 421996389 421997254 5.210000e-142 514.0
12 TraesCS6A01G395900 chr5D 87.342 79 7 3 821 897 1725402 1725325 1.350000e-13 87.9
13 TraesCS6A01G395900 chr5A 84.318 829 117 10 1 820 571463472 571462648 0.000000e+00 798.0
14 TraesCS6A01G395900 chr2D 83.971 836 113 18 1 824 164537592 164538418 0.000000e+00 782.0
15 TraesCS6A01G395900 chr2D 79.712 833 140 23 9 824 43275815 43276635 2.360000e-160 575.0
16 TraesCS6A01G395900 chr4D 83.081 727 112 10 9 729 108227669 108226948 0.000000e+00 651.0
17 TraesCS6A01G395900 chr4A 80.605 794 131 18 69 850 158179439 158178657 2.340000e-165 592.0
18 TraesCS6A01G395900 chr1A 78.525 922 161 29 1 898 252279026 252279934 3.050000e-159 571.0
19 TraesCS6A01G395900 chr1A 72.164 758 159 39 177 897 469827002 469827744 1.670000e-42 183.0
20 TraesCS6A01G395900 chr5B 79.759 746 131 17 9 744 508684718 508685453 8.660000e-145 523.0
21 TraesCS6A01G395900 chr7B 81.373 306 49 6 498 802 482171853 482171555 2.710000e-60 243.0
22 TraesCS6A01G395900 chr4B 86.207 87 7 5 814 897 108412860 108412944 3.740000e-14 89.8
23 TraesCS6A01G395900 chr7A 86.076 79 9 2 821 899 33146866 33146942 1.740000e-12 84.2
24 TraesCS6A01G395900 chr3A 87.671 73 7 2 823 894 646565211 646565140 1.740000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G395900 chr6A 608399576 608402304 2728 True 5040 5040 100.000 1 2729 1 chr6A.!!$R1 2728
1 TraesCS6A01G395900 chr6B 703412518 703413869 1351 True 1604 1604 88.170 897 2246 1 chr6B.!!$R3 1349
2 TraesCS6A01G395900 chr6B 703486181 703486937 756 True 1083 1083 92.632 1495 2246 1 chr6B.!!$R5 751
3 TraesCS6A01G395900 chr6D 143356369 143357187 818 True 822 822 84.933 9 824 1 chr6D.!!$R1 815
4 TraesCS6A01G395900 chr5D 452557776 452558596 820 True 822 822 84.922 1 820 1 chr5D.!!$R2 819
5 TraesCS6A01G395900 chr5D 421996389 421997254 865 False 514 514 77.790 14 897 1 chr5D.!!$F1 883
6 TraesCS6A01G395900 chr5A 571462648 571463472 824 True 798 798 84.318 1 820 1 chr5A.!!$R1 819
7 TraesCS6A01G395900 chr2D 164537592 164538418 826 False 782 782 83.971 1 824 1 chr2D.!!$F2 823
8 TraesCS6A01G395900 chr2D 43275815 43276635 820 False 575 575 79.712 9 824 1 chr2D.!!$F1 815
9 TraesCS6A01G395900 chr4D 108226948 108227669 721 True 651 651 83.081 9 729 1 chr4D.!!$R1 720
10 TraesCS6A01G395900 chr4A 158178657 158179439 782 True 592 592 80.605 69 850 1 chr4A.!!$R1 781
11 TraesCS6A01G395900 chr1A 252279026 252279934 908 False 571 571 78.525 1 898 1 chr1A.!!$F1 897
12 TraesCS6A01G395900 chr5B 508684718 508685453 735 False 523 523 79.759 9 744 1 chr5B.!!$F1 735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
425 434 0.523966 CGAGAGACCAGTGGACAGTC 59.476 60.0 18.4 9.5 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2368 2429 0.034059 CGCCCTCATGTCCATCTACC 59.966 60.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 2.430921 GCAGTGGTCGGAGTGTCG 60.431 66.667 0.00 0.00 0.00 4.35
115 118 2.592861 GTGGCTGGATGATCGCCC 60.593 66.667 8.56 1.61 43.12 6.13
135 139 1.383664 ATCTGGGCAGCTAGCTCCA 60.384 57.895 25.17 23.16 45.81 3.86
147 151 1.556911 CTAGCTCCAGGGCTTTGAAGA 59.443 52.381 0.00 0.00 42.97 2.87
242 248 2.731571 GCTGGAGCCGGTGATGGTA 61.732 63.158 1.90 0.00 34.31 3.25
243 249 2.044806 GCTGGAGCCGGTGATGGTAT 62.045 60.000 1.90 0.00 34.31 2.73
244 250 1.338107 CTGGAGCCGGTGATGGTATA 58.662 55.000 1.90 0.00 0.00 1.47
253 259 2.490991 GGTGATGGTATAACGCCCTTC 58.509 52.381 0.00 0.00 0.00 3.46
274 281 1.996292 CGTCGCTTCCTTCATGAAGA 58.004 50.000 32.49 17.73 43.60 2.87
285 293 4.646492 TCCTTCATGAAGACATCATCGAGA 59.354 41.667 32.49 16.10 45.91 4.04
300 308 1.902508 TCGAGATGAAGCTCCCAACTT 59.097 47.619 0.00 0.00 0.00 2.66
313 321 2.025605 TCCCAACTTCTCTCGCTACCTA 60.026 50.000 0.00 0.00 0.00 3.08
316 324 3.192844 CCAACTTCTCTCGCTACCTACAA 59.807 47.826 0.00 0.00 0.00 2.41
318 326 3.952931 ACTTCTCTCGCTACCTACAAGA 58.047 45.455 0.00 0.00 0.00 3.02
323 331 5.194432 TCTCTCGCTACCTACAAGAGAAAT 58.806 41.667 0.00 0.00 39.49 2.17
352 360 2.200337 TCGATCGGATGATGGCGGT 61.200 57.895 16.41 0.00 34.09 5.68
372 380 1.980765 TGCTCTTGTGTCATTCCCTCT 59.019 47.619 0.00 0.00 0.00 3.69
410 419 1.375908 GGTGTGCATTGGCTCGAGA 60.376 57.895 18.75 0.00 41.91 4.04
425 434 0.523966 CGAGAGACCAGTGGACAGTC 59.476 60.000 18.40 9.50 0.00 3.51
503 516 4.329545 GGCAGGGTCTCGGCAACA 62.330 66.667 0.00 0.00 38.33 3.33
511 524 2.364324 GGGTCTCGGCAACAGATGTATA 59.636 50.000 0.00 0.00 0.00 1.47
513 526 3.802685 GGTCTCGGCAACAGATGTATAAC 59.197 47.826 0.00 0.00 0.00 1.89
617 631 2.625314 CTGCTCTGAAGATGGATCGGTA 59.375 50.000 0.00 0.00 0.00 4.02
657 674 4.056125 CAGAGTGCGCCAGACCGA 62.056 66.667 4.18 0.00 0.00 4.69
668 685 4.082523 AGACCGATGTGTGCCCCG 62.083 66.667 0.00 0.00 0.00 5.73
671 689 4.838152 CCGATGTGTGCCCCGGAG 62.838 72.222 0.73 0.00 44.29 4.63
722 741 5.644636 CGGCTTTAGATGTTAGGTTTTGGTA 59.355 40.000 0.00 0.00 0.00 3.25
723 742 6.317893 CGGCTTTAGATGTTAGGTTTTGGTAT 59.682 38.462 0.00 0.00 0.00 2.73
729 748 7.504926 AGATGTTAGGTTTTGGTATGAGGTA 57.495 36.000 0.00 0.00 0.00 3.08
744 763 7.159372 GGTATGAGGTATGTTTGATATTCGGT 58.841 38.462 0.00 0.00 0.00 4.69
762 783 0.822121 GTTTGGACTTTCGGCACCCT 60.822 55.000 0.00 0.00 0.00 4.34
802 835 2.330440 TGCGATAGATGTTGCCATGT 57.670 45.000 0.00 0.00 39.76 3.21
806 839 3.789791 GCGATAGATGTTGCCATGTTGTG 60.790 47.826 0.00 0.00 39.76 3.33
811 856 3.254166 AGATGTTGCCATGTTGTGACTTC 59.746 43.478 0.00 0.00 0.00 3.01
812 857 2.373224 TGTTGCCATGTTGTGACTTCA 58.627 42.857 0.00 0.00 0.00 3.02
813 858 2.358582 TGTTGCCATGTTGTGACTTCAG 59.641 45.455 0.00 0.00 0.00 3.02
815 860 2.221169 TGCCATGTTGTGACTTCAGAC 58.779 47.619 0.00 0.00 0.00 3.51
816 861 2.158769 TGCCATGTTGTGACTTCAGACT 60.159 45.455 0.00 0.00 0.00 3.24
817 862 2.880890 GCCATGTTGTGACTTCAGACTT 59.119 45.455 0.00 0.00 0.00 3.01
818 863 4.065088 GCCATGTTGTGACTTCAGACTTA 58.935 43.478 0.00 0.00 0.00 2.24
820 865 5.056480 CCATGTTGTGACTTCAGACTTACA 58.944 41.667 0.00 0.00 0.00 2.41
853 901 3.507103 AAAATAACTGCATGCATCGCA 57.493 38.095 22.97 18.52 44.86 5.10
877 925 2.254152 TGCAGAGGTAGGAGGTCATT 57.746 50.000 0.00 0.00 0.00 2.57
924 974 8.280909 TCACAATTCTAATTGAAAAGCGAAAC 57.719 30.769 19.53 0.00 46.72 2.78
938 988 2.494073 AGCGAAACTTTCACCAAAACCA 59.506 40.909 2.49 0.00 0.00 3.67
941 991 3.801594 CGAAACTTTCACCAAAACCATGG 59.198 43.478 11.19 11.19 46.38 3.66
956 1008 1.421382 CATGGGTTTTGCGCAAGAAG 58.579 50.000 23.68 6.66 43.38 2.85
961 1013 1.477105 GTTTTGCGCAAGAAGACCAC 58.523 50.000 23.68 8.68 43.02 4.16
970 1022 3.123621 CGCAAGAAGACCACATTCACTAC 59.876 47.826 0.00 0.00 43.02 2.73
978 1031 8.037758 AGAAGACCACATTCACTACTTAATGAG 58.962 37.037 0.00 0.00 36.73 2.90
981 1034 5.877012 ACCACATTCACTACTTAATGAGCTG 59.123 40.000 0.00 0.00 36.73 4.24
984 1037 7.254692 CCACATTCACTACTTAATGAGCTGATG 60.255 40.741 0.00 0.00 36.73 3.07
987 1040 7.834068 TTCACTACTTAATGAGCTGATGTTC 57.166 36.000 0.00 0.00 0.00 3.18
990 1043 6.020281 CACTACTTAATGAGCTGATGTTCGTC 60.020 42.308 0.00 0.00 0.00 4.20
995 1048 1.416813 GAGCTGATGTTCGTCGCAGG 61.417 60.000 0.00 0.00 0.00 4.85
997 1050 1.811266 CTGATGTTCGTCGCAGGGG 60.811 63.158 0.00 0.00 0.00 4.79
999 1052 1.079405 GATGTTCGTCGCAGGGGAA 60.079 57.895 0.00 0.00 0.00 3.97
1010 1063 1.467920 GCAGGGGAAATGTCAGAAGG 58.532 55.000 0.00 0.00 0.00 3.46
1011 1064 1.004745 GCAGGGGAAATGTCAGAAGGA 59.995 52.381 0.00 0.00 0.00 3.36
1012 1065 2.555227 GCAGGGGAAATGTCAGAAGGAA 60.555 50.000 0.00 0.00 0.00 3.36
1015 1068 3.593328 AGGGGAAATGTCAGAAGGAATGA 59.407 43.478 0.00 0.00 0.00 2.57
1032 1085 1.215647 GACGATGTTGGGACGAGCT 59.784 57.895 0.00 0.00 0.00 4.09
1040 1093 0.541063 TTGGGACGAGCTGGTGTAGA 60.541 55.000 5.94 0.00 0.00 2.59
1051 1104 2.748605 CTGGTGTAGATGGAGATTCGC 58.251 52.381 0.00 0.00 0.00 4.70
1060 1113 2.892425 GAGATTCGCCGCACCCTG 60.892 66.667 0.00 0.00 0.00 4.45
1061 1114 4.473520 AGATTCGCCGCACCCTGG 62.474 66.667 0.00 0.00 0.00 4.45
1071 1124 2.503061 CACCCTGGGCATCGAGAG 59.497 66.667 14.08 0.00 0.00 3.20
1073 1126 2.060980 ACCCTGGGCATCGAGAGAC 61.061 63.158 14.08 0.00 46.97 3.36
1079 1132 0.543174 GGGCATCGAGAGACCCCTAT 60.543 60.000 1.02 0.00 46.26 2.57
1080 1133 0.892063 GGCATCGAGAGACCCCTATC 59.108 60.000 0.00 0.00 46.97 2.08
1087 1140 1.889829 GAGAGACCCCTATCGACCATG 59.110 57.143 0.00 0.00 0.00 3.66
1097 1150 1.024579 ATCGACCATGGTCCGCAAAC 61.025 55.000 34.05 12.82 41.76 2.93
1098 1151 1.671054 CGACCATGGTCCGCAAACT 60.671 57.895 34.05 2.00 41.76 2.66
1104 1157 1.086696 ATGGTCCGCAAACTTCGATG 58.913 50.000 0.00 0.00 0.00 3.84
1107 1160 1.153353 GTCCGCAAACTTCGATGGAA 58.847 50.000 3.12 0.00 0.00 3.53
1122 1175 2.526304 TGGAAGAGTTGTCGAAGGTG 57.474 50.000 0.00 0.00 0.00 4.00
1127 1180 4.626172 GGAAGAGTTGTCGAAGGTGATAAC 59.374 45.833 0.00 0.00 39.44 1.89
1129 1182 4.810790 AGAGTTGTCGAAGGTGATAACAG 58.189 43.478 6.23 0.00 40.99 3.16
1130 1183 4.523173 AGAGTTGTCGAAGGTGATAACAGA 59.477 41.667 6.23 0.00 40.99 3.41
1158 1211 1.206578 CATGCCGGTGTTGTTCGTC 59.793 57.895 1.90 0.00 0.00 4.20
1164 1217 1.752833 GGTGTTGTTCGTCCCCTCT 59.247 57.895 0.00 0.00 0.00 3.69
1165 1218 0.971386 GGTGTTGTTCGTCCCCTCTA 59.029 55.000 0.00 0.00 0.00 2.43
1168 1221 0.606604 GTTGTTCGTCCCCTCTAGCA 59.393 55.000 0.00 0.00 0.00 3.49
1185 1238 3.727258 AATGGGCGGCTGGTAGCA 61.727 61.111 9.56 0.00 44.75 3.49
1186 1239 3.704231 AATGGGCGGCTGGTAGCAG 62.704 63.158 17.67 17.67 44.75 4.24
1189 1242 2.202892 GGCGGCTGGTAGCAGTAC 60.203 66.667 22.21 14.61 44.75 2.73
1198 1251 2.449137 GGTAGCAGTACCCCTAGACA 57.551 55.000 0.00 0.00 42.91 3.41
1199 1252 2.030371 GGTAGCAGTACCCCTAGACAC 58.970 57.143 0.00 0.00 42.91 3.67
1208 1261 1.151413 ACCCCTAGACACCCTTCAGAA 59.849 52.381 0.00 0.00 0.00 3.02
1210 1263 2.436173 CCCCTAGACACCCTTCAGAATC 59.564 54.545 0.00 0.00 0.00 2.52
1227 1280 0.820891 ATCTGATGCCCACCAATCGC 60.821 55.000 0.00 0.00 0.00 4.58
1266 1319 4.818546 TCTGACAAAGAAAAGAAGGAGCAG 59.181 41.667 0.00 0.00 29.54 4.24
1278 1331 1.003233 GGAGCAGGCTTTCCGTTCT 60.003 57.895 0.00 0.00 37.47 3.01
1285 1338 0.171231 GGCTTTCCGTTCTTGGATGC 59.829 55.000 0.00 0.00 38.00 3.91
1296 1349 0.680280 CTTGGATGCTGCTTCTGGCT 60.680 55.000 14.20 0.00 42.39 4.75
1299 1352 1.382692 GGATGCTGCTTCTGGCTTCC 61.383 60.000 14.20 0.00 42.54 3.46
1300 1353 1.379576 ATGCTGCTTCTGGCTTCCC 60.380 57.895 0.00 0.00 42.39 3.97
1308 1361 2.677875 CTGGCTTCCCTGGTTGCC 60.678 66.667 12.87 12.87 45.10 4.52
1323 1376 1.978455 TTGCCACCGTCACCTTCACT 61.978 55.000 0.00 0.00 0.00 3.41
1326 1379 1.227527 CACCGTCACCTTCACTGCA 60.228 57.895 0.00 0.00 0.00 4.41
1329 1382 1.669115 CGTCACCTTCACTGCAGGG 60.669 63.158 19.93 15.69 35.46 4.45
1335 1388 1.673665 CTTCACTGCAGGGCTCACC 60.674 63.158 19.93 0.00 40.67 4.02
1357 1410 2.824880 CCCGGTGGTTTCTGGTCCA 61.825 63.158 0.00 0.00 32.33 4.02
1381 1434 2.933906 GACGACAAGGACAACAAGTTCA 59.066 45.455 0.00 0.00 0.00 3.18
1384 1437 5.120399 ACGACAAGGACAACAAGTTCATTA 58.880 37.500 0.00 0.00 0.00 1.90
1389 1442 5.048846 AGGACAACAAGTTCATTACTGGT 57.951 39.130 0.00 0.00 43.13 4.00
1425 1478 2.688446 TGACAAATCTCGCTCGAGGTAT 59.312 45.455 15.58 3.89 42.20 2.73
1434 1487 2.607635 TCGCTCGAGGTATGCAATTTTC 59.392 45.455 15.58 0.00 0.00 2.29
1503 1556 2.945668 GTTGCTCGCCAAGAATAGGAAT 59.054 45.455 0.00 0.00 33.21 3.01
1504 1557 2.564771 TGCTCGCCAAGAATAGGAATG 58.435 47.619 0.00 0.00 0.00 2.67
1566 1619 3.367630 CACTTTGTTTTGTGTGCTTGGTC 59.632 43.478 0.00 0.00 0.00 4.02
1629 1682 1.757574 CGGTGAACGTCGTTCTTGTA 58.242 50.000 31.76 14.33 42.39 2.41
1634 1687 3.549070 GTGAACGTCGTTCTTGTACTTGT 59.451 43.478 31.76 0.00 42.39 3.16
1639 1692 5.343249 ACGTCGTTCTTGTACTTGTACTTT 58.657 37.500 11.53 0.00 0.00 2.66
1660 1713 5.579384 TTACGTTTTCTACATGACGTTGG 57.421 39.130 12.41 0.00 45.32 3.77
1683 1736 2.291670 ACGGACTATCTCCTGGTGTTCT 60.292 50.000 0.00 0.00 36.80 3.01
1688 1741 5.532032 GGACTATCTCCTGGTGTTCTAGTAC 59.468 48.000 0.00 0.00 35.89 2.73
1692 1745 5.916661 TCTCCTGGTGTTCTAGTACATTC 57.083 43.478 5.42 2.79 0.00 2.67
1700 1753 5.479306 GTGTTCTAGTACATTCTCAAGGCA 58.521 41.667 5.42 0.00 0.00 4.75
1704 1757 6.544928 TCTAGTACATTCTCAAGGCATCAA 57.455 37.500 0.00 0.00 0.00 2.57
1716 1769 1.763770 GCATCAAGGATCCCCGGAT 59.236 57.895 8.55 6.35 37.58 4.18
1735 1788 3.445857 GATTCGGTTCCTTAAGAGGTCG 58.554 50.000 3.36 3.24 43.97 4.79
1739 1792 1.405661 GGTTCCTTAAGAGGTCGGCTG 60.406 57.143 3.36 0.00 43.97 4.85
1789 1842 6.863645 GCAAGGAGGAAGATTTTACAAAAGAC 59.136 38.462 0.00 0.00 0.00 3.01
1793 1846 7.229506 AGGAGGAAGATTTTACAAAAGACACAG 59.770 37.037 0.00 0.00 0.00 3.66
1896 1954 4.514066 ACCGTGTTAGTGAAATCTGGTTTC 59.486 41.667 6.45 6.45 45.21 2.78
1923 1981 4.638304 TGTAACTACAGGAGAAAACTGCC 58.362 43.478 0.00 0.00 39.55 4.85
1939 1997 6.780457 AAACTGCCATTGCTAATCATTAGT 57.220 33.333 6.29 0.00 38.71 2.24
1940 1998 7.880160 AAACTGCCATTGCTAATCATTAGTA 57.120 32.000 6.29 0.00 38.71 1.82
2002 2062 9.539194 TGACTCCTCTATATGTCAATCATACAT 57.461 33.333 0.00 0.00 41.13 2.29
2062 2122 1.751351 GGCAAAGGGCTATCCAAACTC 59.249 52.381 0.00 0.00 44.01 3.01
2065 2125 3.545703 CAAAGGGCTATCCAAACTCGAT 58.454 45.455 0.00 0.00 38.24 3.59
2066 2126 4.703897 CAAAGGGCTATCCAAACTCGATA 58.296 43.478 0.00 0.00 38.24 2.92
2069 2129 4.962155 AGGGCTATCCAAACTCGATAAAG 58.038 43.478 0.00 0.00 38.24 1.85
2087 2147 3.553828 AAGTCTTTCCGGAGTGTTGAA 57.446 42.857 3.34 0.00 0.00 2.69
2106 2166 1.078848 CTCCACAAAGAGGGCTCGG 60.079 63.158 0.00 0.00 34.09 4.63
2107 2167 1.831652 CTCCACAAAGAGGGCTCGGT 61.832 60.000 0.00 0.00 34.09 4.69
2131 2191 1.133976 CCTCCTTCTGGCAATACAGGG 60.134 57.143 0.00 0.00 38.98 4.45
2138 2198 1.837439 CTGGCAATACAGGGTCTACCA 59.163 52.381 0.81 0.00 43.89 3.25
2150 2210 1.903183 GGTCTACCAAGCTCCTTCTGT 59.097 52.381 0.00 0.00 35.64 3.41
2158 2218 3.059982 CTCCTTCTGTCGGGCACA 58.940 61.111 0.00 0.00 0.00 4.57
2159 2219 1.599047 CTCCTTCTGTCGGGCACAT 59.401 57.895 0.00 0.00 33.23 3.21
2172 2232 1.608801 GGGCACATGGAAAAGGCTTTG 60.609 52.381 14.19 3.62 0.00 2.77
2173 2233 1.150827 GCACATGGAAAAGGCTTTGC 58.849 50.000 14.19 11.84 33.71 3.68
2225 2286 3.148279 GACTGACGGGCGGGAGAT 61.148 66.667 0.00 0.00 0.00 2.75
2233 2294 2.833582 GGCGGGAGATGGAGACGA 60.834 66.667 0.00 0.00 0.00 4.20
2246 2307 2.028766 GAGACGACGCATGCCACATG 62.029 60.000 13.15 3.18 0.00 3.21
2247 2308 3.099619 GACGACGCATGCCACATGG 62.100 63.158 13.15 0.00 38.53 3.66
2267 2328 0.811281 CAAAGGGATTGCCGAGTTCC 59.189 55.000 0.00 0.00 33.83 3.62
2268 2329 0.698818 AAAGGGATTGCCGAGTTCCT 59.301 50.000 0.00 0.00 33.83 3.36
2269 2330 0.698818 AAGGGATTGCCGAGTTCCTT 59.301 50.000 0.00 0.00 33.83 3.36
2270 2331 0.698818 AGGGATTGCCGAGTTCCTTT 59.301 50.000 0.00 0.00 33.83 3.11
2271 2332 0.811281 GGGATTGCCGAGTTCCTTTG 59.189 55.000 0.00 0.00 33.83 2.77
2272 2333 0.811281 GGATTGCCGAGTTCCTTTGG 59.189 55.000 0.00 0.00 0.00 3.28
2275 2336 3.431725 GCCGAGTTCCTTTGGCCG 61.432 66.667 0.00 0.00 41.70 6.13
2276 2337 2.746277 CCGAGTTCCTTTGGCCGG 60.746 66.667 0.00 0.00 0.00 6.13
2277 2338 2.345991 CGAGTTCCTTTGGCCGGA 59.654 61.111 5.05 0.00 0.00 5.14
2278 2339 2.033194 CGAGTTCCTTTGGCCGGAC 61.033 63.158 5.05 0.56 0.00 4.79
2279 2340 1.072505 GAGTTCCTTTGGCCGGACA 59.927 57.895 5.41 5.41 0.00 4.02
2280 2341 1.228154 AGTTCCTTTGGCCGGACAC 60.228 57.895 11.33 0.00 0.00 3.67
2281 2342 1.228154 GTTCCTTTGGCCGGACACT 60.228 57.895 11.33 0.00 0.00 3.55
2282 2343 1.072505 TTCCTTTGGCCGGACACTC 59.927 57.895 11.33 0.00 0.00 3.51
2283 2344 2.725203 TTCCTTTGGCCGGACACTCG 62.725 60.000 11.33 0.00 0.00 4.18
2291 2352 3.715854 CCGGACACTCGGTAAAGAG 57.284 57.895 0.00 0.00 44.60 2.85
2292 2353 0.458025 CCGGACACTCGGTAAAGAGC 60.458 60.000 0.00 0.00 44.60 4.09
2304 2365 4.849111 GGTAAAGAGCGAAGAACATGAG 57.151 45.455 0.00 0.00 0.00 2.90
2305 2366 3.619038 GGTAAAGAGCGAAGAACATGAGG 59.381 47.826 0.00 0.00 0.00 3.86
2306 2367 2.393271 AAGAGCGAAGAACATGAGGG 57.607 50.000 0.00 0.00 0.00 4.30
2307 2368 1.270907 AGAGCGAAGAACATGAGGGT 58.729 50.000 0.00 0.00 0.00 4.34
2308 2369 1.066573 AGAGCGAAGAACATGAGGGTG 60.067 52.381 0.00 0.00 0.00 4.61
2309 2370 0.976641 AGCGAAGAACATGAGGGTGA 59.023 50.000 0.00 0.00 0.00 4.02
2310 2371 1.079503 GCGAAGAACATGAGGGTGAC 58.920 55.000 0.00 0.00 0.00 3.67
2311 2372 1.608025 GCGAAGAACATGAGGGTGACA 60.608 52.381 0.00 0.00 0.00 3.58
2312 2373 2.936993 GCGAAGAACATGAGGGTGACAT 60.937 50.000 0.00 0.00 0.00 3.06
2313 2374 2.674852 CGAAGAACATGAGGGTGACATG 59.325 50.000 0.00 0.00 46.96 3.21
2318 2379 1.742761 CATGAGGGTGACATGTGTCC 58.257 55.000 1.15 5.13 44.15 4.02
2319 2380 0.620556 ATGAGGGTGACATGTGTCCC 59.379 55.000 21.05 21.05 44.15 4.46
2320 2381 0.473694 TGAGGGTGACATGTGTCCCT 60.474 55.000 27.62 27.62 44.15 4.20
2321 2382 0.250513 GAGGGTGACATGTGTCCCTC 59.749 60.000 31.77 31.77 42.23 4.30
2322 2383 0.178891 AGGGTGACATGTGTCCCTCT 60.179 55.000 23.98 10.02 44.15 3.69
2323 2384 1.078823 AGGGTGACATGTGTCCCTCTA 59.921 52.381 23.98 0.00 44.15 2.43
2324 2385 1.482593 GGGTGACATGTGTCCCTCTAG 59.517 57.143 21.22 0.00 44.15 2.43
2325 2386 2.180276 GGTGACATGTGTCCCTCTAGT 58.820 52.381 1.15 0.00 44.15 2.57
2326 2387 3.362706 GGTGACATGTGTCCCTCTAGTA 58.637 50.000 1.15 0.00 44.15 1.82
2327 2388 3.130693 GGTGACATGTGTCCCTCTAGTAC 59.869 52.174 1.15 0.09 44.15 2.73
2328 2389 3.014623 TGACATGTGTCCCTCTAGTACG 58.985 50.000 1.15 0.00 44.15 3.67
2329 2390 3.015327 GACATGTGTCCCTCTAGTACGT 58.985 50.000 1.15 0.00 39.07 3.57
2330 2391 3.015327 ACATGTGTCCCTCTAGTACGTC 58.985 50.000 0.00 0.00 0.00 4.34
2331 2392 3.280295 CATGTGTCCCTCTAGTACGTCT 58.720 50.000 0.00 0.00 0.00 4.18
2332 2393 3.430042 TGTGTCCCTCTAGTACGTCTT 57.570 47.619 0.00 0.00 0.00 3.01
2333 2394 4.558226 TGTGTCCCTCTAGTACGTCTTA 57.442 45.455 0.00 0.00 0.00 2.10
2334 2395 5.108187 TGTGTCCCTCTAGTACGTCTTAT 57.892 43.478 0.00 0.00 0.00 1.73
2335 2396 4.880120 TGTGTCCCTCTAGTACGTCTTATG 59.120 45.833 0.00 0.00 0.00 1.90
2336 2397 4.880696 GTGTCCCTCTAGTACGTCTTATGT 59.119 45.833 0.00 0.00 0.00 2.29
2337 2398 4.880120 TGTCCCTCTAGTACGTCTTATGTG 59.120 45.833 0.00 0.00 0.00 3.21
2338 2399 4.880696 GTCCCTCTAGTACGTCTTATGTGT 59.119 45.833 0.00 0.00 0.00 3.72
2339 2400 5.007528 GTCCCTCTAGTACGTCTTATGTGTC 59.992 48.000 0.00 0.00 0.00 3.67
2340 2401 4.275443 CCCTCTAGTACGTCTTATGTGTCC 59.725 50.000 0.00 0.00 0.00 4.02
2341 2402 4.275443 CCTCTAGTACGTCTTATGTGTCCC 59.725 50.000 0.00 0.00 0.00 4.46
2342 2403 5.108187 TCTAGTACGTCTTATGTGTCCCT 57.892 43.478 0.00 0.00 0.00 4.20
2343 2404 5.503927 TCTAGTACGTCTTATGTGTCCCTT 58.496 41.667 0.00 0.00 0.00 3.95
2344 2405 5.948162 TCTAGTACGTCTTATGTGTCCCTTT 59.052 40.000 0.00 0.00 0.00 3.11
2345 2406 4.817517 AGTACGTCTTATGTGTCCCTTTG 58.182 43.478 0.00 0.00 0.00 2.77
2346 2407 2.423577 ACGTCTTATGTGTCCCTTTGC 58.576 47.619 0.00 0.00 0.00 3.68
2347 2408 1.737793 CGTCTTATGTGTCCCTTTGCC 59.262 52.381 0.00 0.00 0.00 4.52
2348 2409 1.737793 GTCTTATGTGTCCCTTTGCCG 59.262 52.381 0.00 0.00 0.00 5.69
2349 2410 1.349688 TCTTATGTGTCCCTTTGCCGT 59.650 47.619 0.00 0.00 0.00 5.68
2350 2411 1.468520 CTTATGTGTCCCTTTGCCGTG 59.531 52.381 0.00 0.00 0.00 4.94
2351 2412 0.398696 TATGTGTCCCTTTGCCGTGT 59.601 50.000 0.00 0.00 0.00 4.49
2352 2413 0.467290 ATGTGTCCCTTTGCCGTGTT 60.467 50.000 0.00 0.00 0.00 3.32
2353 2414 1.098712 TGTGTCCCTTTGCCGTGTTC 61.099 55.000 0.00 0.00 0.00 3.18
2354 2415 1.527380 TGTCCCTTTGCCGTGTTCC 60.527 57.895 0.00 0.00 0.00 3.62
2355 2416 2.281208 TCCCTTTGCCGTGTTCCG 60.281 61.111 0.00 0.00 0.00 4.30
2356 2417 2.281208 CCCTTTGCCGTGTTCCGA 60.281 61.111 0.00 0.00 39.56 4.55
2357 2418 2.325082 CCCTTTGCCGTGTTCCGAG 61.325 63.158 0.00 0.00 39.56 4.63
2358 2419 2.325082 CCTTTGCCGTGTTCCGAGG 61.325 63.158 0.00 0.00 39.56 4.63
2362 2423 4.373116 GCCGTGTTCCGAGGCTCA 62.373 66.667 15.95 0.00 46.83 4.26
2363 2424 2.125912 CCGTGTTCCGAGGCTCAG 60.126 66.667 15.95 2.77 39.56 3.35
2364 2425 2.125912 CGTGTTCCGAGGCTCAGG 60.126 66.667 15.95 16.07 39.56 3.86
2365 2426 2.636412 CGTGTTCCGAGGCTCAGGA 61.636 63.158 19.52 19.52 39.56 3.86
2366 2427 1.671742 GTGTTCCGAGGCTCAGGAA 59.328 57.895 26.17 26.17 43.57 3.36
2367 2428 0.034896 GTGTTCCGAGGCTCAGGAAA 59.965 55.000 29.30 20.67 46.74 3.13
2368 2429 0.321671 TGTTCCGAGGCTCAGGAAAG 59.678 55.000 29.30 9.45 46.74 2.62
2369 2430 0.391793 GTTCCGAGGCTCAGGAAAGG 60.392 60.000 29.30 16.74 46.74 3.11
2370 2431 0.836400 TTCCGAGGCTCAGGAAAGGT 60.836 55.000 27.10 0.00 42.91 3.50
2371 2432 0.040646 TCCGAGGCTCAGGAAAGGTA 59.959 55.000 20.63 2.89 32.86 3.08
2372 2433 0.461961 CCGAGGCTCAGGAAAGGTAG 59.538 60.000 15.95 0.00 0.00 3.18
2373 2434 1.475403 CGAGGCTCAGGAAAGGTAGA 58.525 55.000 15.95 0.00 0.00 2.59
2374 2435 2.035632 CGAGGCTCAGGAAAGGTAGAT 58.964 52.381 15.95 0.00 0.00 1.98
2375 2436 2.223923 CGAGGCTCAGGAAAGGTAGATG 60.224 54.545 15.95 0.00 0.00 2.90
2376 2437 2.103941 GAGGCTCAGGAAAGGTAGATGG 59.896 54.545 10.25 0.00 0.00 3.51
2377 2438 2.119495 GGCTCAGGAAAGGTAGATGGA 58.881 52.381 0.00 0.00 0.00 3.41
2378 2439 2.158885 GGCTCAGGAAAGGTAGATGGAC 60.159 54.545 0.00 0.00 0.00 4.02
2379 2440 2.501723 GCTCAGGAAAGGTAGATGGACA 59.498 50.000 0.00 0.00 0.00 4.02
2380 2441 3.135530 GCTCAGGAAAGGTAGATGGACAT 59.864 47.826 0.00 0.00 0.00 3.06
2381 2442 4.701765 CTCAGGAAAGGTAGATGGACATG 58.298 47.826 0.00 0.00 0.00 3.21
2382 2443 4.361783 TCAGGAAAGGTAGATGGACATGA 58.638 43.478 0.00 0.00 0.00 3.07
2383 2444 4.406972 TCAGGAAAGGTAGATGGACATGAG 59.593 45.833 0.00 0.00 0.00 2.90
2384 2445 3.713764 AGGAAAGGTAGATGGACATGAGG 59.286 47.826 0.00 0.00 0.00 3.86
2385 2446 3.181450 GGAAAGGTAGATGGACATGAGGG 60.181 52.174 0.00 0.00 0.00 4.30
2386 2447 1.428869 AGGTAGATGGACATGAGGGC 58.571 55.000 0.00 0.00 0.00 5.19
2387 2448 0.034059 GGTAGATGGACATGAGGGCG 59.966 60.000 0.00 0.00 0.00 6.13
2388 2449 0.034059 GTAGATGGACATGAGGGCGG 59.966 60.000 0.00 0.00 0.00 6.13
2389 2450 1.758440 TAGATGGACATGAGGGCGGC 61.758 60.000 0.00 0.00 0.00 6.53
2390 2451 3.405093 GATGGACATGAGGGCGGCA 62.405 63.158 12.47 0.00 0.00 5.69
2391 2452 2.687418 GATGGACATGAGGGCGGCAT 62.687 60.000 12.47 2.18 0.00 4.40
2392 2453 2.903855 GGACATGAGGGCGGCATG 60.904 66.667 12.47 8.86 46.49 4.06
2395 2456 2.438975 CATGAGGGCGGCATGTGT 60.439 61.111 12.47 0.00 38.59 3.72
2396 2457 2.124570 ATGAGGGCGGCATGTGTC 60.125 61.111 12.47 0.00 0.00 3.67
2397 2458 3.704231 ATGAGGGCGGCATGTGTCC 62.704 63.158 12.47 2.84 0.00 4.02
2401 2462 4.101448 GGCGGCATGTGTCCCTCT 62.101 66.667 3.07 0.00 0.00 3.69
2402 2463 2.731571 GGCGGCATGTGTCCCTCTA 61.732 63.158 3.07 0.00 0.00 2.43
2403 2464 1.227380 GCGGCATGTGTCCCTCTAG 60.227 63.158 0.00 0.00 0.00 2.43
2404 2465 1.961180 GCGGCATGTGTCCCTCTAGT 61.961 60.000 0.00 0.00 0.00 2.57
2405 2466 0.537188 CGGCATGTGTCCCTCTAGTT 59.463 55.000 0.00 0.00 0.00 2.24
2406 2467 1.471676 CGGCATGTGTCCCTCTAGTTC 60.472 57.143 0.00 0.00 0.00 3.01
2407 2468 1.834263 GGCATGTGTCCCTCTAGTTCT 59.166 52.381 0.00 0.00 0.00 3.01
2408 2469 2.159028 GGCATGTGTCCCTCTAGTTCTC 60.159 54.545 0.00 0.00 0.00 2.87
2409 2470 2.159028 GCATGTGTCCCTCTAGTTCTCC 60.159 54.545 0.00 0.00 0.00 3.71
2410 2471 1.835494 TGTGTCCCTCTAGTTCTCCG 58.165 55.000 0.00 0.00 0.00 4.63
2411 2472 1.075050 TGTGTCCCTCTAGTTCTCCGT 59.925 52.381 0.00 0.00 0.00 4.69
2412 2473 1.473278 GTGTCCCTCTAGTTCTCCGTG 59.527 57.143 0.00 0.00 0.00 4.94
2413 2474 1.075050 TGTCCCTCTAGTTCTCCGTGT 59.925 52.381 0.00 0.00 0.00 4.49
2414 2475 1.744522 GTCCCTCTAGTTCTCCGTGTC 59.255 57.143 0.00 0.00 0.00 3.67
2415 2476 0.733729 CCCTCTAGTTCTCCGTGTCG 59.266 60.000 0.00 0.00 0.00 4.35
2425 2486 4.551729 CCGTGTCGGCCCATTTAT 57.448 55.556 0.00 0.00 41.17 1.40
2426 2487 2.317230 CCGTGTCGGCCCATTTATC 58.683 57.895 0.00 0.00 41.17 1.75
2427 2488 1.495584 CCGTGTCGGCCCATTTATCG 61.496 60.000 0.00 0.00 41.17 2.92
2428 2489 0.528901 CGTGTCGGCCCATTTATCGA 60.529 55.000 0.00 0.00 0.00 3.59
2429 2490 1.217882 GTGTCGGCCCATTTATCGAG 58.782 55.000 0.00 0.00 32.09 4.04
2430 2491 0.828022 TGTCGGCCCATTTATCGAGT 59.172 50.000 0.00 0.00 32.09 4.18
2431 2492 1.208535 TGTCGGCCCATTTATCGAGTT 59.791 47.619 0.00 0.00 32.09 3.01
2432 2493 1.865340 GTCGGCCCATTTATCGAGTTC 59.135 52.381 0.00 0.00 32.09 3.01
2433 2494 1.760613 TCGGCCCATTTATCGAGTTCT 59.239 47.619 0.00 0.00 0.00 3.01
2434 2495 1.867233 CGGCCCATTTATCGAGTTCTG 59.133 52.381 0.00 0.00 0.00 3.02
2435 2496 2.483013 CGGCCCATTTATCGAGTTCTGA 60.483 50.000 0.00 0.00 0.00 3.27
2436 2497 3.744660 GGCCCATTTATCGAGTTCTGAT 58.255 45.455 0.00 0.00 0.00 2.90
2437 2498 3.499918 GGCCCATTTATCGAGTTCTGATG 59.500 47.826 0.00 0.00 0.00 3.07
2438 2499 3.058639 GCCCATTTATCGAGTTCTGATGC 60.059 47.826 0.00 0.00 0.00 3.91
2439 2500 4.384056 CCCATTTATCGAGTTCTGATGCT 58.616 43.478 0.00 0.00 0.00 3.79
2440 2501 4.450419 CCCATTTATCGAGTTCTGATGCTC 59.550 45.833 0.00 1.20 0.00 4.26
2447 2508 3.713889 GAGTTCTGATGCTCGACAAAC 57.286 47.619 0.00 0.00 0.00 2.93
2448 2509 3.059884 GAGTTCTGATGCTCGACAAACA 58.940 45.455 0.00 0.00 0.00 2.83
2449 2510 2.802816 AGTTCTGATGCTCGACAAACAC 59.197 45.455 0.00 0.00 0.00 3.32
2450 2511 2.802816 GTTCTGATGCTCGACAAACACT 59.197 45.455 0.00 0.00 0.00 3.55
2451 2512 3.934457 TCTGATGCTCGACAAACACTA 57.066 42.857 0.00 0.00 0.00 2.74
2452 2513 3.575630 TCTGATGCTCGACAAACACTAC 58.424 45.455 0.00 0.00 0.00 2.73
2453 2514 3.005367 TCTGATGCTCGACAAACACTACA 59.995 43.478 0.00 0.00 0.00 2.74
2454 2515 3.723260 TGATGCTCGACAAACACTACAA 58.277 40.909 0.00 0.00 0.00 2.41
2455 2516 4.123506 TGATGCTCGACAAACACTACAAA 58.876 39.130 0.00 0.00 0.00 2.83
2456 2517 4.572795 TGATGCTCGACAAACACTACAAAA 59.427 37.500 0.00 0.00 0.00 2.44
2457 2518 4.948608 TGCTCGACAAACACTACAAAAA 57.051 36.364 0.00 0.00 0.00 1.94
2479 2540 8.814038 AAAAATATGCTAATCAGTGACCTTCT 57.186 30.769 0.00 0.00 0.00 2.85
2480 2541 7.798596 AAATATGCTAATCAGTGACCTTCTG 57.201 36.000 0.00 0.00 0.00 3.02
2481 2542 4.833478 ATGCTAATCAGTGACCTTCTGT 57.167 40.909 0.00 0.00 34.86 3.41
2482 2543 4.193826 TGCTAATCAGTGACCTTCTGTC 57.806 45.455 0.00 0.00 44.72 3.51
2497 2558 8.948631 GACCTTCTGTCATAAATCTATGAACA 57.051 34.615 0.00 0.00 44.36 3.18
2498 2559 9.553064 GACCTTCTGTCATAAATCTATGAACAT 57.447 33.333 0.00 0.00 44.36 2.71
2499 2560 9.911788 ACCTTCTGTCATAAATCTATGAACATT 57.088 29.630 0.00 0.00 44.36 2.71
2512 2573 9.439500 AATCTATGAACATTTTCAACCAATTGG 57.561 29.630 23.31 23.31 45.01 3.16
2531 2592 2.235891 GGTTGTAACCTGTTTGGGAGG 58.764 52.381 6.54 0.00 45.75 4.30
2532 2593 2.235891 GTTGTAACCTGTTTGGGAGGG 58.764 52.381 0.00 0.00 41.11 4.30
2533 2594 1.525175 TGTAACCTGTTTGGGAGGGT 58.475 50.000 0.00 0.00 41.11 4.34
2534 2595 1.422402 TGTAACCTGTTTGGGAGGGTC 59.578 52.381 0.00 0.00 41.11 4.46
2535 2596 1.069775 TAACCTGTTTGGGAGGGTCC 58.930 55.000 0.00 0.00 41.11 4.46
2536 2597 0.996762 AACCTGTTTGGGAGGGTCCA 60.997 55.000 0.00 0.00 38.64 4.02
2537 2598 0.996762 ACCTGTTTGGGAGGGTCCAA 60.997 55.000 0.00 0.00 44.29 3.53
2553 2614 4.052608 GGTCCAAACCCAAAAACATAACG 58.947 43.478 0.00 0.00 39.93 3.18
2554 2615 4.202131 GGTCCAAACCCAAAAACATAACGA 60.202 41.667 0.00 0.00 39.93 3.85
2555 2616 4.741185 GTCCAAACCCAAAAACATAACGAC 59.259 41.667 0.00 0.00 0.00 4.34
2556 2617 4.052608 CCAAACCCAAAAACATAACGACC 58.947 43.478 0.00 0.00 0.00 4.79
2557 2618 4.441634 CCAAACCCAAAAACATAACGACCA 60.442 41.667 0.00 0.00 0.00 4.02
2558 2619 5.293560 CAAACCCAAAAACATAACGACCAT 58.706 37.500 0.00 0.00 0.00 3.55
2559 2620 5.538849 AACCCAAAAACATAACGACCATT 57.461 34.783 0.00 0.00 0.00 3.16
2560 2621 5.538849 ACCCAAAAACATAACGACCATTT 57.461 34.783 0.00 0.00 0.00 2.32
2561 2622 5.919755 ACCCAAAAACATAACGACCATTTT 58.080 33.333 0.00 0.00 0.00 1.82
2562 2623 5.755861 ACCCAAAAACATAACGACCATTTTG 59.244 36.000 0.00 0.00 37.45 2.44
2563 2624 6.221858 CCAAAAACATAACGACCATTTTGG 57.778 37.500 11.92 11.92 45.74 3.28
2624 2685 6.803154 AAGCAGATAACACTGTTTACTTCC 57.197 37.500 0.00 0.00 38.97 3.46
2625 2686 6.115448 AGCAGATAACACTGTTTACTTCCT 57.885 37.500 0.00 0.00 39.73 3.36
2626 2687 6.166982 AGCAGATAACACTGTTTACTTCCTC 58.833 40.000 0.00 0.00 39.73 3.71
2627 2688 6.014156 AGCAGATAACACTGTTTACTTCCTCT 60.014 38.462 0.00 0.00 39.73 3.69
2628 2689 6.091441 GCAGATAACACTGTTTACTTCCTCTG 59.909 42.308 0.00 3.82 39.73 3.35
2629 2690 7.378966 CAGATAACACTGTTTACTTCCTCTGA 58.621 38.462 0.00 0.00 33.73 3.27
2630 2691 8.037758 CAGATAACACTGTTTACTTCCTCTGAT 58.962 37.037 0.00 0.00 33.73 2.90
2631 2692 8.598041 AGATAACACTGTTTACTTCCTCTGATT 58.402 33.333 0.00 0.00 0.00 2.57
2632 2693 9.871238 GATAACACTGTTTACTTCCTCTGATTA 57.129 33.333 0.00 0.00 0.00 1.75
2633 2694 7.964604 AACACTGTTTACTTCCTCTGATTAC 57.035 36.000 0.00 0.00 0.00 1.89
2634 2695 6.157211 ACACTGTTTACTTCCTCTGATTACG 58.843 40.000 0.00 0.00 0.00 3.18
2635 2696 6.015688 ACACTGTTTACTTCCTCTGATTACGA 60.016 38.462 0.00 0.00 0.00 3.43
2636 2697 6.308282 CACTGTTTACTTCCTCTGATTACGAC 59.692 42.308 0.00 0.00 0.00 4.34
2637 2698 5.717119 TGTTTACTTCCTCTGATTACGACC 58.283 41.667 0.00 0.00 0.00 4.79
2638 2699 5.244402 TGTTTACTTCCTCTGATTACGACCA 59.756 40.000 0.00 0.00 0.00 4.02
2639 2700 5.988310 TTACTTCCTCTGATTACGACCAA 57.012 39.130 0.00 0.00 0.00 3.67
2640 2701 6.540438 TTACTTCCTCTGATTACGACCAAT 57.460 37.500 0.00 0.00 0.00 3.16
2641 2702 5.422214 ACTTCCTCTGATTACGACCAATT 57.578 39.130 0.00 0.00 0.00 2.32
2642 2703 5.805728 ACTTCCTCTGATTACGACCAATTT 58.194 37.500 0.00 0.00 0.00 1.82
2643 2704 6.942976 ACTTCCTCTGATTACGACCAATTTA 58.057 36.000 0.00 0.00 0.00 1.40
2644 2705 7.391620 ACTTCCTCTGATTACGACCAATTTAA 58.608 34.615 0.00 0.00 0.00 1.52
2645 2706 7.881232 ACTTCCTCTGATTACGACCAATTTAAA 59.119 33.333 0.00 0.00 0.00 1.52
2646 2707 8.801882 TTCCTCTGATTACGACCAATTTAAAT 57.198 30.769 0.00 0.00 0.00 1.40
2647 2708 8.208718 TCCTCTGATTACGACCAATTTAAATG 57.791 34.615 0.39 0.00 0.00 2.32
2648 2709 7.282224 TCCTCTGATTACGACCAATTTAAATGG 59.718 37.037 0.39 8.08 43.84 3.16
2661 2722 8.918961 CCAATTTAAATGGTCGTATTTGCTAA 57.081 30.769 0.39 0.00 32.79 3.09
2662 2723 9.528018 CCAATTTAAATGGTCGTATTTGCTAAT 57.472 29.630 0.39 0.00 32.79 1.73
2665 2726 8.829514 TTTAAATGGTCGTATTTGCTAATTCG 57.170 30.769 12.28 12.28 36.31 3.34
2666 2727 5.418310 AATGGTCGTATTTGCTAATTCGG 57.582 39.130 16.79 2.79 35.86 4.30
2667 2728 4.126208 TGGTCGTATTTGCTAATTCGGA 57.874 40.909 16.79 4.68 35.86 4.55
2668 2729 4.699637 TGGTCGTATTTGCTAATTCGGAT 58.300 39.130 16.79 0.00 35.86 4.18
2669 2730 5.120399 TGGTCGTATTTGCTAATTCGGATT 58.880 37.500 16.79 0.00 35.86 3.01
2670 2731 5.007234 TGGTCGTATTTGCTAATTCGGATTG 59.993 40.000 16.79 0.00 35.86 2.67
2671 2732 4.904154 GTCGTATTTGCTAATTCGGATTGC 59.096 41.667 16.79 1.64 35.86 3.56
2672 2733 3.900116 CGTATTTGCTAATTCGGATTGCG 59.100 43.478 11.00 0.00 32.80 4.85
2673 2734 4.551990 CGTATTTGCTAATTCGGATTGCGT 60.552 41.667 11.00 0.00 32.80 5.24
2674 2735 3.398954 TTTGCTAATTCGGATTGCGTC 57.601 42.857 0.00 0.00 0.00 5.19
2675 2736 1.295792 TGCTAATTCGGATTGCGTCC 58.704 50.000 0.00 0.00 44.10 4.79
2700 2761 3.465701 TGGACGTCCACATCAGCA 58.534 55.556 33.23 8.16 42.01 4.41
2701 2762 1.293179 TGGACGTCCACATCAGCAG 59.707 57.895 33.23 0.00 42.01 4.24
2702 2763 1.293498 GGACGTCCACATCAGCAGT 59.707 57.895 29.75 0.00 35.64 4.40
2703 2764 0.320771 GGACGTCCACATCAGCAGTT 60.321 55.000 29.75 0.00 35.64 3.16
2704 2765 1.512926 GACGTCCACATCAGCAGTTT 58.487 50.000 3.51 0.00 0.00 2.66
2705 2766 1.195448 GACGTCCACATCAGCAGTTTG 59.805 52.381 3.51 0.00 0.00 2.93
2706 2767 1.202639 ACGTCCACATCAGCAGTTTGA 60.203 47.619 0.00 0.00 0.00 2.69
2707 2768 1.872952 CGTCCACATCAGCAGTTTGAA 59.127 47.619 0.00 0.00 0.00 2.69
2708 2769 2.349817 CGTCCACATCAGCAGTTTGAAC 60.350 50.000 0.00 0.00 0.00 3.18
2709 2770 2.030805 GTCCACATCAGCAGTTTGAACC 60.031 50.000 0.00 0.00 0.00 3.62
2710 2771 1.270550 CCACATCAGCAGTTTGAACCC 59.729 52.381 0.00 0.00 0.00 4.11
2711 2772 2.233271 CACATCAGCAGTTTGAACCCT 58.767 47.619 0.00 0.00 0.00 4.34
2712 2773 2.624838 CACATCAGCAGTTTGAACCCTT 59.375 45.455 0.00 0.00 0.00 3.95
2713 2774 2.624838 ACATCAGCAGTTTGAACCCTTG 59.375 45.455 0.00 0.00 0.00 3.61
2714 2775 1.691196 TCAGCAGTTTGAACCCTTGG 58.309 50.000 0.00 0.00 0.00 3.61
2715 2776 0.032540 CAGCAGTTTGAACCCTTGGC 59.967 55.000 0.00 0.00 0.00 4.52
2716 2777 0.396974 AGCAGTTTGAACCCTTGGCA 60.397 50.000 0.00 0.00 0.00 4.92
2717 2778 0.249447 GCAGTTTGAACCCTTGGCAC 60.249 55.000 0.00 0.00 0.00 5.01
2718 2779 1.402787 CAGTTTGAACCCTTGGCACT 58.597 50.000 0.00 0.00 0.00 4.40
2719 2780 2.582052 CAGTTTGAACCCTTGGCACTA 58.418 47.619 0.00 0.00 0.00 2.74
2720 2781 3.157087 CAGTTTGAACCCTTGGCACTAT 58.843 45.455 0.00 0.00 0.00 2.12
2721 2782 3.057315 CAGTTTGAACCCTTGGCACTATG 60.057 47.826 0.00 0.00 0.00 2.23
2722 2783 3.153919 GTTTGAACCCTTGGCACTATGA 58.846 45.455 0.00 0.00 0.00 2.15
2723 2784 2.787473 TGAACCCTTGGCACTATGAG 57.213 50.000 0.00 0.00 0.00 2.90
2724 2785 1.985159 TGAACCCTTGGCACTATGAGT 59.015 47.619 0.00 0.00 0.00 3.41
2725 2786 2.375174 TGAACCCTTGGCACTATGAGTT 59.625 45.455 0.00 0.00 0.00 3.01
2726 2787 3.181434 TGAACCCTTGGCACTATGAGTTT 60.181 43.478 0.00 0.00 0.00 2.66
2727 2788 3.525800 ACCCTTGGCACTATGAGTTTT 57.474 42.857 0.00 0.00 0.00 2.43
2728 2789 3.844640 ACCCTTGGCACTATGAGTTTTT 58.155 40.909 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 0.108329 CTGTCACCACGGTGTATCCC 60.108 60.000 15.65 1.87 45.55 3.85
93 94 0.107993 CGATCATCCAGCCACACTGT 60.108 55.000 0.00 0.00 45.68 3.55
115 118 1.006337 GAGCTAGCTGCCCAGATCG 60.006 63.158 24.99 0.00 44.23 3.69
125 128 0.911525 TCAAAGCCCTGGAGCTAGCT 60.912 55.000 19.45 19.45 44.11 3.32
135 139 2.800250 CAAGACCATCTTCAAAGCCCT 58.200 47.619 0.00 0.00 33.78 5.19
226 232 1.414919 GTTATACCATCACCGGCTCCA 59.585 52.381 0.00 0.00 0.00 3.86
253 259 1.351430 TTCATGAAGGAAGCGACGCG 61.351 55.000 15.18 3.53 0.00 6.01
285 293 2.093764 CGAGAGAAGTTGGGAGCTTCAT 60.094 50.000 0.00 0.00 43.36 2.57
300 308 3.908643 TCTCTTGTAGGTAGCGAGAGA 57.091 47.619 12.88 12.88 45.94 3.10
313 321 5.422331 TCGACTAATCAGGGATTTCTCTTGT 59.578 40.000 0.00 0.00 33.95 3.16
316 324 5.048364 CGATCGACTAATCAGGGATTTCTCT 60.048 44.000 10.26 0.00 33.95 3.10
318 326 4.021894 CCGATCGACTAATCAGGGATTTCT 60.022 45.833 18.66 0.00 33.95 2.52
323 331 2.651382 TCCGATCGACTAATCAGGGA 57.349 50.000 18.66 0.00 0.00 4.20
352 360 1.980765 AGAGGGAATGACACAAGAGCA 59.019 47.619 0.00 0.00 0.00 4.26
372 380 1.283029 CTCCAAGAATGAAGCCCCAGA 59.717 52.381 0.00 0.00 0.00 3.86
380 389 2.655090 TGCACACCTCCAAGAATGAA 57.345 45.000 0.00 0.00 0.00 2.57
410 419 1.887198 CGTAAGACTGTCCACTGGTCT 59.113 52.381 3.76 0.00 41.37 3.85
425 434 4.430765 ACGCCGCTCCACCGTAAG 62.431 66.667 0.00 0.00 32.86 2.34
486 499 4.329545 TGTTGCCGAGACCCTGCC 62.330 66.667 0.00 0.00 0.00 4.85
503 516 4.237724 CACGCATCCATCGTTATACATCT 58.762 43.478 0.00 0.00 38.19 2.90
511 524 0.179084 CCCTACACGCATCCATCGTT 60.179 55.000 0.00 0.00 38.19 3.85
513 526 0.319040 CTCCCTACACGCATCCATCG 60.319 60.000 0.00 0.00 0.00 3.84
722 741 7.013274 CCAAACCGAATATCAAACATACCTCAT 59.987 37.037 0.00 0.00 0.00 2.90
723 742 6.317642 CCAAACCGAATATCAAACATACCTCA 59.682 38.462 0.00 0.00 0.00 3.86
729 748 6.834168 AAGTCCAAACCGAATATCAAACAT 57.166 33.333 0.00 0.00 0.00 2.71
744 763 0.106419 AAGGGTGCCGAAAGTCCAAA 60.106 50.000 0.00 0.00 0.00 3.28
762 783 5.335583 CGCAACTCCTAACCATTTGATGAAA 60.336 40.000 0.00 0.00 0.00 2.69
802 835 9.725019 ATTATTCATGTAAGTCTGAAGTCACAA 57.275 29.630 0.00 0.00 35.04 3.33
853 901 1.007721 ACCTCCTACCTCTGCATCTGT 59.992 52.381 0.00 0.00 0.00 3.41
904 952 8.968242 GTGAAAGTTTCGCTTTTCAATTAGAAT 58.032 29.630 19.60 0.00 46.54 2.40
918 968 2.882324 TGGTTTTGGTGAAAGTTTCGC 58.118 42.857 18.86 18.86 39.40 4.70
919 969 3.801594 CCATGGTTTTGGTGAAAGTTTCG 59.198 43.478 10.92 0.00 31.74 3.46
924 974 3.836365 AACCCATGGTTTTGGTGAAAG 57.164 42.857 11.73 0.00 44.33 2.62
938 988 1.000274 GTCTTCTTGCGCAAAACCCAT 60.000 47.619 25.01 0.00 0.00 4.00
941 991 0.383949 TGGTCTTCTTGCGCAAAACC 59.616 50.000 25.01 25.13 0.00 3.27
947 999 0.874390 TGAATGTGGTCTTCTTGCGC 59.126 50.000 0.00 0.00 0.00 6.09
949 1001 4.319177 AGTAGTGAATGTGGTCTTCTTGC 58.681 43.478 0.00 0.00 0.00 4.01
956 1008 6.036517 CAGCTCATTAAGTAGTGAATGTGGTC 59.963 42.308 10.24 0.00 35.97 4.02
961 1013 7.783090 ACATCAGCTCATTAAGTAGTGAATG 57.217 36.000 1.49 1.49 34.89 2.67
970 1022 3.302092 GCGACGAACATCAGCTCATTAAG 60.302 47.826 0.00 0.00 0.00 1.85
978 1031 2.456119 CCCTGCGACGAACATCAGC 61.456 63.158 0.00 0.00 0.00 4.26
981 1034 0.672401 TTTCCCCTGCGACGAACATC 60.672 55.000 0.00 0.00 0.00 3.06
984 1037 0.953960 ACATTTCCCCTGCGACGAAC 60.954 55.000 0.00 0.00 0.00 3.95
987 1040 1.361668 CTGACATTTCCCCTGCGACG 61.362 60.000 0.00 0.00 0.00 5.12
990 1043 1.089920 CTTCTGACATTTCCCCTGCG 58.910 55.000 0.00 0.00 0.00 5.18
995 1048 3.375299 CGTCATTCCTTCTGACATTTCCC 59.625 47.826 4.53 0.00 42.52 3.97
997 1050 5.352569 ACATCGTCATTCCTTCTGACATTTC 59.647 40.000 4.53 0.00 42.52 2.17
999 1052 4.836825 ACATCGTCATTCCTTCTGACATT 58.163 39.130 4.53 0.00 42.52 2.71
1010 1063 1.927174 CTCGTCCCAACATCGTCATTC 59.073 52.381 0.00 0.00 0.00 2.67
1011 1064 2.007049 GCTCGTCCCAACATCGTCATT 61.007 52.381 0.00 0.00 0.00 2.57
1012 1065 0.460284 GCTCGTCCCAACATCGTCAT 60.460 55.000 0.00 0.00 0.00 3.06
1015 1068 1.079819 CAGCTCGTCCCAACATCGT 60.080 57.895 0.00 0.00 0.00 3.73
1017 1070 1.021390 CACCAGCTCGTCCCAACATC 61.021 60.000 0.00 0.00 0.00 3.06
1032 1085 1.412710 GGCGAATCTCCATCTACACCA 59.587 52.381 0.00 0.00 0.00 4.17
1040 1093 2.203070 GGTGCGGCGAATCTCCAT 60.203 61.111 12.98 0.00 0.00 3.41
1060 1113 0.543174 ATAGGGGTCTCTCGATGCCC 60.543 60.000 5.48 5.48 40.35 5.36
1061 1114 0.892063 GATAGGGGTCTCTCGATGCC 59.108 60.000 0.00 0.00 0.00 4.40
1062 1115 0.523966 CGATAGGGGTCTCTCGATGC 59.476 60.000 0.00 0.00 40.60 3.91
1066 1119 0.179026 TGGTCGATAGGGGTCTCTCG 60.179 60.000 0.00 0.00 39.84 4.04
1067 1120 1.889829 CATGGTCGATAGGGGTCTCTC 59.110 57.143 0.00 0.00 0.00 3.20
1071 1124 0.680061 GACCATGGTCGATAGGGGTC 59.320 60.000 28.52 11.74 38.15 4.46
1073 1126 1.816863 CGGACCATGGTCGATAGGGG 61.817 65.000 33.24 15.15 45.41 4.79
1076 1129 0.104120 TTGCGGACCATGGTCGATAG 59.896 55.000 33.24 24.90 45.41 2.08
1079 1132 1.669760 GTTTGCGGACCATGGTCGA 60.670 57.895 33.24 19.67 45.41 4.20
1080 1133 1.234615 AAGTTTGCGGACCATGGTCG 61.235 55.000 33.24 28.07 45.41 4.79
1087 1140 0.672401 TCCATCGAAGTTTGCGGACC 60.672 55.000 0.00 0.00 0.00 4.46
1097 1150 3.217599 TCGACAACTCTTCCATCGAAG 57.782 47.619 0.00 0.00 45.96 3.79
1098 1151 3.575630 CTTCGACAACTCTTCCATCGAA 58.424 45.455 7.12 7.12 46.33 3.71
1104 1157 2.814280 TCACCTTCGACAACTCTTCC 57.186 50.000 0.00 0.00 0.00 3.46
1107 1160 4.523173 TCTGTTATCACCTTCGACAACTCT 59.477 41.667 0.00 0.00 0.00 3.24
1114 1167 2.565391 TGGCTTCTGTTATCACCTTCGA 59.435 45.455 0.00 0.00 0.00 3.71
1115 1168 2.972625 TGGCTTCTGTTATCACCTTCG 58.027 47.619 0.00 0.00 0.00 3.79
1117 1170 4.019174 CCATTGGCTTCTGTTATCACCTT 58.981 43.478 0.00 0.00 0.00 3.50
1140 1193 1.206578 GACGAACAACACCGGCATG 59.793 57.895 0.00 0.00 33.27 4.06
1158 1211 2.111878 CGCCCATTGCTAGAGGGG 59.888 66.667 9.82 4.77 43.04 4.79
1164 1217 2.324014 CTACCAGCCGCCCATTGCTA 62.324 60.000 0.00 0.00 35.69 3.49
1165 1218 3.704231 CTACCAGCCGCCCATTGCT 62.704 63.158 0.00 0.00 38.67 3.91
1168 1221 3.704231 CTGCTACCAGCCGCCCATT 62.704 63.158 0.00 0.00 41.51 3.16
1181 1234 1.063417 GGGTGTCTAGGGGTACTGCTA 60.063 57.143 0.00 0.00 0.00 3.49
1182 1235 0.325390 GGGTGTCTAGGGGTACTGCT 60.325 60.000 0.00 0.00 0.00 4.24
1185 1238 1.720533 TGAAGGGTGTCTAGGGGTACT 59.279 52.381 0.00 0.00 0.00 2.73
1186 1239 2.108970 CTGAAGGGTGTCTAGGGGTAC 58.891 57.143 0.00 0.00 0.00 3.34
1189 1242 1.952621 TTCTGAAGGGTGTCTAGGGG 58.047 55.000 0.00 0.00 0.00 4.79
1192 1245 5.599732 CATCAGATTCTGAAGGGTGTCTAG 58.400 45.833 19.73 0.00 44.04 2.43
1198 1251 1.213926 GGGCATCAGATTCTGAAGGGT 59.786 52.381 19.73 1.11 44.04 4.34
1199 1252 1.213678 TGGGCATCAGATTCTGAAGGG 59.786 52.381 19.73 13.15 44.04 3.95
1208 1261 0.820891 GCGATTGGTGGGCATCAGAT 60.821 55.000 0.00 0.00 0.00 2.90
1210 1263 2.827051 CGCGATTGGTGGGCATCAG 61.827 63.158 0.00 0.00 0.00 2.90
1244 1297 4.023365 CCTGCTCCTTCTTTTCTTTGTCAG 60.023 45.833 0.00 0.00 0.00 3.51
1249 1302 3.235750 AGCCTGCTCCTTCTTTTCTTT 57.764 42.857 0.00 0.00 0.00 2.52
1250 1303 2.967745 AGCCTGCTCCTTCTTTTCTT 57.032 45.000 0.00 0.00 0.00 2.52
1251 1304 2.967745 AAGCCTGCTCCTTCTTTTCT 57.032 45.000 0.00 0.00 0.00 2.52
1266 1319 0.171231 GCATCCAAGAACGGAAAGCC 59.829 55.000 0.00 0.00 38.95 4.35
1278 1331 4.007457 GCCAGAAGCAGCATCCAA 57.993 55.556 0.00 0.00 42.97 3.53
1308 1361 1.224069 CTGCAGTGAAGGTGACGGTG 61.224 60.000 5.25 0.00 0.00 4.94
1309 1362 1.069765 CTGCAGTGAAGGTGACGGT 59.930 57.895 5.25 0.00 0.00 4.83
1312 1365 1.968540 GCCCTGCAGTGAAGGTGAC 60.969 63.158 16.55 1.36 32.45 3.67
1317 1370 1.673665 GGTGAGCCCTGCAGTGAAG 60.674 63.158 13.81 0.00 0.00 3.02
1344 1397 1.448497 GTCGGTGGACCAGAAACCA 59.552 57.895 0.00 0.00 37.19 3.67
1357 1410 0.176219 TTGTTGTCCTTGTCGTCGGT 59.824 50.000 0.00 0.00 0.00 4.69
1358 1411 0.859232 CTTGTTGTCCTTGTCGTCGG 59.141 55.000 0.00 0.00 0.00 4.79
1359 1412 1.567504 ACTTGTTGTCCTTGTCGTCG 58.432 50.000 0.00 0.00 0.00 5.12
1389 1442 0.321475 TGTCACGCATGATTGGCTCA 60.321 50.000 0.00 0.00 37.14 4.26
1425 1478 0.825425 TGCCGGTCTGGAAAATTGCA 60.825 50.000 1.90 0.00 42.00 4.08
1434 1487 1.024271 CCATTATGTTGCCGGTCTGG 58.976 55.000 1.90 0.00 42.50 3.86
1504 1557 5.476614 ACCTAAACTTATGACCGTCTTGTC 58.523 41.667 0.00 0.00 35.77 3.18
1599 1652 1.366111 CGTTCACCGCCCCTTGTATG 61.366 60.000 0.00 0.00 0.00 2.39
1629 1682 8.758715 GTCATGTAGAAAACGTAAAGTACAAGT 58.241 33.333 0.00 0.00 0.00 3.16
1634 1687 7.096106 CCAACGTCATGTAGAAAACGTAAAGTA 60.096 37.037 8.23 0.00 46.61 2.24
1639 1692 4.619973 ACCAACGTCATGTAGAAAACGTA 58.380 39.130 8.23 0.00 46.61 3.57
1667 1720 7.504238 AGAATGTACTAGAACACCAGGAGATAG 59.496 40.741 0.00 0.00 30.75 2.08
1683 1736 5.425217 TCCTTGATGCCTTGAGAATGTACTA 59.575 40.000 0.00 0.00 0.00 1.82
1688 1741 3.568853 GGATCCTTGATGCCTTGAGAATG 59.431 47.826 3.84 0.00 0.00 2.67
1692 1745 1.978454 GGGATCCTTGATGCCTTGAG 58.022 55.000 12.58 0.00 45.25 3.02
1700 1753 0.687354 CGAATCCGGGGATCCTTGAT 59.313 55.000 12.58 8.41 33.08 2.57
1716 1769 1.547372 CCGACCTCTTAAGGAACCGAA 59.453 52.381 1.85 0.00 46.67 4.30
1739 1792 7.667283 CCATTACTTATTCGATCGTAGCAATC 58.333 38.462 15.94 0.00 0.00 2.67
1789 1842 3.924686 GCTGATGGAATTTTCTTGCTGTG 59.075 43.478 0.00 0.00 0.00 3.66
1793 1846 2.533266 CCGCTGATGGAATTTTCTTGC 58.467 47.619 0.00 0.00 0.00 4.01
1896 1954 8.443937 GCAGTTTTCTCCTGTAGTTACAAATAG 58.556 37.037 0.00 0.00 35.50 1.73
1910 1968 2.299326 AGCAATGGCAGTTTTCTCCT 57.701 45.000 0.00 0.00 44.61 3.69
1940 1998 9.927081 AACTTCATCCAACAAAATAGGAGATAT 57.073 29.630 0.00 0.00 34.40 1.63
1952 2010 9.126151 TCAACTTATTACAACTTCATCCAACAA 57.874 29.630 0.00 0.00 0.00 2.83
2062 2122 3.846360 ACACTCCGGAAAGACTTTATCG 58.154 45.455 5.23 8.10 0.00 2.92
2065 2125 4.675976 TCAACACTCCGGAAAGACTTTA 57.324 40.909 5.23 0.00 0.00 1.85
2066 2126 3.553828 TCAACACTCCGGAAAGACTTT 57.446 42.857 5.23 0.00 0.00 2.66
2069 2129 2.801111 GAGTTCAACACTCCGGAAAGAC 59.199 50.000 5.23 0.00 45.84 3.01
2087 2147 1.674057 CGAGCCCTCTTTGTGGAGT 59.326 57.895 0.00 0.00 0.00 3.85
2094 2154 0.544595 AGGTACACCGAGCCCTCTTT 60.545 55.000 0.00 0.00 42.08 2.52
2106 2166 2.789409 ATTGCCAGAAGGAGGTACAC 57.211 50.000 0.00 0.00 36.89 2.90
2107 2167 3.178046 TGTATTGCCAGAAGGAGGTACA 58.822 45.455 0.00 0.00 36.89 2.90
2131 2191 2.416162 CGACAGAAGGAGCTTGGTAGAC 60.416 54.545 0.00 0.00 0.00 2.59
2138 2198 2.217038 TGCCCGACAGAAGGAGCTT 61.217 57.895 0.00 0.00 0.00 3.74
2150 2210 1.976474 GCCTTTTCCATGTGCCCGA 60.976 57.895 0.00 0.00 0.00 5.14
2172 2232 2.358737 CCCTGGTTGACACTCGGC 60.359 66.667 0.00 0.00 0.00 5.54
2173 2233 1.301716 CACCCTGGTTGACACTCGG 60.302 63.158 0.00 0.00 0.00 4.63
2175 2235 1.594331 GAACACCCTGGTTGACACTC 58.406 55.000 0.00 0.00 0.00 3.51
2225 2286 3.690280 TGGCATGCGTCGTCTCCA 61.690 61.111 12.44 0.00 0.00 3.86
2248 2309 0.811281 GGAACTCGGCAATCCCTTTG 59.189 55.000 0.00 0.00 38.43 2.77
2249 2310 0.698818 AGGAACTCGGCAATCCCTTT 59.301 50.000 0.00 0.00 33.55 3.11
2250 2311 0.698818 AAGGAACTCGGCAATCCCTT 59.301 50.000 0.00 0.00 38.49 3.95
2251 2312 0.698818 AAAGGAACTCGGCAATCCCT 59.301 50.000 0.00 0.00 38.49 4.20
2252 2313 0.811281 CAAAGGAACTCGGCAATCCC 59.189 55.000 0.00 0.00 38.49 3.85
2253 2314 0.811281 CCAAAGGAACTCGGCAATCC 59.189 55.000 0.00 0.00 38.49 3.01
2254 2315 0.171231 GCCAAAGGAACTCGGCAATC 59.829 55.000 0.00 0.00 44.25 2.67
2255 2316 1.250840 GGCCAAAGGAACTCGGCAAT 61.251 55.000 0.00 0.00 46.75 3.56
2256 2317 1.901464 GGCCAAAGGAACTCGGCAA 60.901 57.895 0.00 0.00 46.75 4.52
2257 2318 2.282180 GGCCAAAGGAACTCGGCA 60.282 61.111 0.00 0.00 46.75 5.69
2258 2319 3.431725 CGGCCAAAGGAACTCGGC 61.432 66.667 2.24 0.00 38.49 5.54
2259 2320 2.746277 CCGGCCAAAGGAACTCGG 60.746 66.667 2.24 0.00 38.49 4.63
2260 2321 2.033194 GTCCGGCCAAAGGAACTCG 61.033 63.158 2.24 0.00 38.49 4.18
2261 2322 1.072505 TGTCCGGCCAAAGGAACTC 59.927 57.895 2.24 0.00 38.49 3.01
2263 2324 1.228154 AGTGTCCGGCCAAAGGAAC 60.228 57.895 2.24 3.29 39.84 3.62
2264 2325 1.072505 GAGTGTCCGGCCAAAGGAA 59.927 57.895 2.24 0.00 39.84 3.36
2265 2326 2.747686 GAGTGTCCGGCCAAAGGA 59.252 61.111 2.24 0.00 34.99 3.36
2266 2327 2.742372 CGAGTGTCCGGCCAAAGG 60.742 66.667 2.24 0.00 0.00 3.11
2267 2328 2.742372 CCGAGTGTCCGGCCAAAG 60.742 66.667 2.24 0.00 43.25 2.77
2274 2335 0.797249 CGCTCTTTACCGAGTGTCCG 60.797 60.000 0.00 0.00 36.91 4.79
2275 2336 0.524862 TCGCTCTTTACCGAGTGTCC 59.475 55.000 0.00 0.00 41.20 4.02
2276 2337 2.095364 TCTTCGCTCTTTACCGAGTGTC 60.095 50.000 0.00 0.00 41.20 3.67
2277 2338 1.884579 TCTTCGCTCTTTACCGAGTGT 59.115 47.619 0.00 0.00 41.20 3.55
2278 2339 2.631418 TCTTCGCTCTTTACCGAGTG 57.369 50.000 0.00 0.00 41.65 3.51
2279 2340 2.295349 TGTTCTTCGCTCTTTACCGAGT 59.705 45.455 0.00 0.00 34.68 4.18
2280 2341 2.942710 TGTTCTTCGCTCTTTACCGAG 58.057 47.619 0.00 0.00 34.68 4.63
2281 2342 3.057104 TCATGTTCTTCGCTCTTTACCGA 60.057 43.478 0.00 0.00 0.00 4.69
2282 2343 3.250744 TCATGTTCTTCGCTCTTTACCG 58.749 45.455 0.00 0.00 0.00 4.02
2283 2344 3.619038 CCTCATGTTCTTCGCTCTTTACC 59.381 47.826 0.00 0.00 0.00 2.85
2284 2345 3.619038 CCCTCATGTTCTTCGCTCTTTAC 59.381 47.826 0.00 0.00 0.00 2.01
2285 2346 3.260884 ACCCTCATGTTCTTCGCTCTTTA 59.739 43.478 0.00 0.00 0.00 1.85
2286 2347 2.039084 ACCCTCATGTTCTTCGCTCTTT 59.961 45.455 0.00 0.00 0.00 2.52
2287 2348 1.625818 ACCCTCATGTTCTTCGCTCTT 59.374 47.619 0.00 0.00 0.00 2.85
2288 2349 1.066573 CACCCTCATGTTCTTCGCTCT 60.067 52.381 0.00 0.00 0.00 4.09
2289 2350 1.066858 TCACCCTCATGTTCTTCGCTC 60.067 52.381 0.00 0.00 0.00 5.03
2290 2351 0.976641 TCACCCTCATGTTCTTCGCT 59.023 50.000 0.00 0.00 0.00 4.93
2291 2352 1.079503 GTCACCCTCATGTTCTTCGC 58.920 55.000 0.00 0.00 0.00 4.70
2292 2353 2.455674 TGTCACCCTCATGTTCTTCG 57.544 50.000 0.00 0.00 0.00 3.79
2299 2360 1.679944 GGGACACATGTCACCCTCATG 60.680 57.143 22.57 4.66 46.47 3.07
2300 2361 0.620556 GGGACACATGTCACCCTCAT 59.379 55.000 22.57 0.00 46.47 2.90
2301 2362 2.066340 GGGACACATGTCACCCTCA 58.934 57.895 22.57 0.00 46.47 3.86
2307 2368 3.014623 CGTACTAGAGGGACACATGTCA 58.985 50.000 13.77 0.00 46.47 3.58
2308 2369 3.015327 ACGTACTAGAGGGACACATGTC 58.985 50.000 0.00 3.27 44.04 3.06
2309 2370 3.015327 GACGTACTAGAGGGACACATGT 58.985 50.000 0.00 0.00 0.00 3.21
2310 2371 3.280295 AGACGTACTAGAGGGACACATG 58.720 50.000 0.00 0.00 0.00 3.21
2311 2372 3.648507 AGACGTACTAGAGGGACACAT 57.351 47.619 0.00 0.00 0.00 3.21
2312 2373 3.430042 AAGACGTACTAGAGGGACACA 57.570 47.619 0.00 0.00 0.00 3.72
2313 2374 4.880696 ACATAAGACGTACTAGAGGGACAC 59.119 45.833 0.00 0.00 0.00 3.67
2314 2375 4.880120 CACATAAGACGTACTAGAGGGACA 59.120 45.833 0.00 0.00 0.00 4.02
2315 2376 4.880696 ACACATAAGACGTACTAGAGGGAC 59.119 45.833 0.00 0.00 0.00 4.46
2316 2377 5.108187 ACACATAAGACGTACTAGAGGGA 57.892 43.478 0.00 0.00 0.00 4.20
2317 2378 4.275443 GGACACATAAGACGTACTAGAGGG 59.725 50.000 0.00 0.00 0.00 4.30
2318 2379 4.275443 GGGACACATAAGACGTACTAGAGG 59.725 50.000 0.00 0.00 0.00 3.69
2319 2380 5.124645 AGGGACACATAAGACGTACTAGAG 58.875 45.833 0.00 0.00 0.00 2.43
2320 2381 5.108187 AGGGACACATAAGACGTACTAGA 57.892 43.478 0.00 0.00 0.00 2.43
2321 2382 5.831702 AAGGGACACATAAGACGTACTAG 57.168 43.478 0.00 0.00 0.00 2.57
2322 2383 5.622914 GCAAAGGGACACATAAGACGTACTA 60.623 44.000 0.00 0.00 0.00 1.82
2323 2384 4.817517 CAAAGGGACACATAAGACGTACT 58.182 43.478 0.00 0.00 0.00 2.73
2324 2385 3.370061 GCAAAGGGACACATAAGACGTAC 59.630 47.826 0.00 0.00 0.00 3.67
2325 2386 3.592059 GCAAAGGGACACATAAGACGTA 58.408 45.455 0.00 0.00 0.00 3.57
2326 2387 2.423577 GCAAAGGGACACATAAGACGT 58.576 47.619 0.00 0.00 0.00 4.34
2327 2388 1.737793 GGCAAAGGGACACATAAGACG 59.262 52.381 0.00 0.00 0.00 4.18
2328 2389 1.737793 CGGCAAAGGGACACATAAGAC 59.262 52.381 0.00 0.00 0.00 3.01
2329 2390 1.349688 ACGGCAAAGGGACACATAAGA 59.650 47.619 0.00 0.00 0.00 2.10
2330 2391 1.468520 CACGGCAAAGGGACACATAAG 59.531 52.381 0.00 0.00 0.00 1.73
2331 2392 1.202830 ACACGGCAAAGGGACACATAA 60.203 47.619 0.00 0.00 0.00 1.90
2332 2393 0.398696 ACACGGCAAAGGGACACATA 59.601 50.000 0.00 0.00 0.00 2.29
2333 2394 0.467290 AACACGGCAAAGGGACACAT 60.467 50.000 0.00 0.00 0.00 3.21
2334 2395 1.077357 AACACGGCAAAGGGACACA 60.077 52.632 0.00 0.00 0.00 3.72
2335 2396 1.652563 GAACACGGCAAAGGGACAC 59.347 57.895 0.00 0.00 0.00 3.67
2336 2397 1.527380 GGAACACGGCAAAGGGACA 60.527 57.895 0.00 0.00 0.00 4.02
2337 2398 2.613506 CGGAACACGGCAAAGGGAC 61.614 63.158 0.00 0.00 39.42 4.46
2338 2399 2.281208 CGGAACACGGCAAAGGGA 60.281 61.111 0.00 0.00 39.42 4.20
2339 2400 2.281208 TCGGAACACGGCAAAGGG 60.281 61.111 0.00 0.00 44.45 3.95
2340 2401 2.325082 CCTCGGAACACGGCAAAGG 61.325 63.158 0.00 0.00 44.45 3.11
2341 2402 2.966309 GCCTCGGAACACGGCAAAG 61.966 63.158 1.45 0.00 41.99 2.77
2342 2403 2.975799 GCCTCGGAACACGGCAAA 60.976 61.111 1.45 0.00 41.99 3.68
2343 2404 3.876589 GAGCCTCGGAACACGGCAA 62.877 63.158 8.49 0.00 44.35 4.52
2344 2405 4.373116 GAGCCTCGGAACACGGCA 62.373 66.667 8.49 0.00 44.35 5.69
2345 2406 4.373116 TGAGCCTCGGAACACGGC 62.373 66.667 0.00 0.00 44.45 5.68
2346 2407 2.125912 CTGAGCCTCGGAACACGG 60.126 66.667 0.00 0.00 44.45 4.94
2347 2408 2.125912 CCTGAGCCTCGGAACACG 60.126 66.667 0.95 0.00 46.11 4.49
2348 2409 0.034896 TTTCCTGAGCCTCGGAACAC 59.965 55.000 14.73 0.00 38.92 3.32
2349 2410 0.321671 CTTTCCTGAGCCTCGGAACA 59.678 55.000 14.73 8.02 38.92 3.18
2350 2411 0.391793 CCTTTCCTGAGCCTCGGAAC 60.392 60.000 14.73 0.00 38.92 3.62
2351 2412 0.836400 ACCTTTCCTGAGCCTCGGAA 60.836 55.000 12.11 12.11 37.52 4.30
2352 2413 0.040646 TACCTTTCCTGAGCCTCGGA 59.959 55.000 0.95 1.48 0.00 4.55
2353 2414 0.461961 CTACCTTTCCTGAGCCTCGG 59.538 60.000 0.00 0.00 0.00 4.63
2354 2415 1.475403 TCTACCTTTCCTGAGCCTCG 58.525 55.000 0.00 0.00 0.00 4.63
2355 2416 2.103941 CCATCTACCTTTCCTGAGCCTC 59.896 54.545 0.00 0.00 0.00 4.70
2356 2417 2.122768 CCATCTACCTTTCCTGAGCCT 58.877 52.381 0.00 0.00 0.00 4.58
2357 2418 2.119495 TCCATCTACCTTTCCTGAGCC 58.881 52.381 0.00 0.00 0.00 4.70
2358 2419 2.501723 TGTCCATCTACCTTTCCTGAGC 59.498 50.000 0.00 0.00 0.00 4.26
2359 2420 4.406972 TCATGTCCATCTACCTTTCCTGAG 59.593 45.833 0.00 0.00 0.00 3.35
2360 2421 4.361783 TCATGTCCATCTACCTTTCCTGA 58.638 43.478 0.00 0.00 0.00 3.86
2361 2422 4.444022 CCTCATGTCCATCTACCTTTCCTG 60.444 50.000 0.00 0.00 0.00 3.86
2362 2423 3.713764 CCTCATGTCCATCTACCTTTCCT 59.286 47.826 0.00 0.00 0.00 3.36
2363 2424 3.181450 CCCTCATGTCCATCTACCTTTCC 60.181 52.174 0.00 0.00 0.00 3.13
2364 2425 3.745797 GCCCTCATGTCCATCTACCTTTC 60.746 52.174 0.00 0.00 0.00 2.62
2365 2426 2.173569 GCCCTCATGTCCATCTACCTTT 59.826 50.000 0.00 0.00 0.00 3.11
2366 2427 1.771255 GCCCTCATGTCCATCTACCTT 59.229 52.381 0.00 0.00 0.00 3.50
2367 2428 1.428869 GCCCTCATGTCCATCTACCT 58.571 55.000 0.00 0.00 0.00 3.08
2368 2429 0.034059 CGCCCTCATGTCCATCTACC 59.966 60.000 0.00 0.00 0.00 3.18
2369 2430 0.034059 CCGCCCTCATGTCCATCTAC 59.966 60.000 0.00 0.00 0.00 2.59
2370 2431 1.758440 GCCGCCCTCATGTCCATCTA 61.758 60.000 0.00 0.00 0.00 1.98
2371 2432 3.112205 GCCGCCCTCATGTCCATCT 62.112 63.158 0.00 0.00 0.00 2.90
2372 2433 2.592861 GCCGCCCTCATGTCCATC 60.593 66.667 0.00 0.00 0.00 3.51
2373 2434 2.760378 ATGCCGCCCTCATGTCCAT 61.760 57.895 0.00 0.00 0.00 3.41
2374 2435 3.410628 ATGCCGCCCTCATGTCCA 61.411 61.111 0.00 0.00 0.00 4.02
2375 2436 2.903855 CATGCCGCCCTCATGTCC 60.904 66.667 0.00 0.00 37.22 4.02
2378 2439 2.438975 ACACATGCCGCCCTCATG 60.439 61.111 0.00 6.09 44.99 3.07
2379 2440 2.124570 GACACATGCCGCCCTCAT 60.125 61.111 0.00 0.00 0.00 2.90
2380 2441 4.408821 GGACACATGCCGCCCTCA 62.409 66.667 0.00 0.00 0.00 3.86
2384 2445 2.650813 CTAGAGGGACACATGCCGCC 62.651 65.000 0.00 0.00 42.42 6.13
2385 2446 1.227380 CTAGAGGGACACATGCCGC 60.227 63.158 0.00 0.00 42.42 6.53
2386 2447 0.537188 AACTAGAGGGACACATGCCG 59.463 55.000 0.00 0.00 42.42 5.69
2387 2448 1.834263 AGAACTAGAGGGACACATGCC 59.166 52.381 0.00 0.00 36.29 4.40
2388 2449 2.159028 GGAGAACTAGAGGGACACATGC 60.159 54.545 0.00 0.00 0.00 4.06
2389 2450 2.099921 CGGAGAACTAGAGGGACACATG 59.900 54.545 0.00 0.00 0.00 3.21
2390 2451 2.291670 ACGGAGAACTAGAGGGACACAT 60.292 50.000 0.00 0.00 0.00 3.21
2391 2452 1.075050 ACGGAGAACTAGAGGGACACA 59.925 52.381 0.00 0.00 0.00 3.72
2392 2453 1.473278 CACGGAGAACTAGAGGGACAC 59.527 57.143 0.00 0.00 0.00 3.67
2393 2454 1.075050 ACACGGAGAACTAGAGGGACA 59.925 52.381 0.00 0.00 0.00 4.02
2394 2455 1.744522 GACACGGAGAACTAGAGGGAC 59.255 57.143 0.00 0.00 0.00 4.46
2395 2456 1.678123 CGACACGGAGAACTAGAGGGA 60.678 57.143 0.00 0.00 0.00 4.20
2396 2457 0.733729 CGACACGGAGAACTAGAGGG 59.266 60.000 0.00 0.00 0.00 4.30
2409 2470 0.528901 TCGATAAATGGGCCGACACG 60.529 55.000 0.00 0.00 0.00 4.49
2410 2471 1.217882 CTCGATAAATGGGCCGACAC 58.782 55.000 0.00 0.00 0.00 3.67
2411 2472 0.828022 ACTCGATAAATGGGCCGACA 59.172 50.000 0.00 0.00 0.00 4.35
2412 2473 1.865340 GAACTCGATAAATGGGCCGAC 59.135 52.381 0.00 0.00 0.00 4.79
2413 2474 1.760613 AGAACTCGATAAATGGGCCGA 59.239 47.619 0.00 0.00 0.00 5.54
2414 2475 1.867233 CAGAACTCGATAAATGGGCCG 59.133 52.381 0.00 0.00 0.00 6.13
2415 2476 3.194005 TCAGAACTCGATAAATGGGCC 57.806 47.619 0.00 0.00 0.00 5.80
2416 2477 3.058639 GCATCAGAACTCGATAAATGGGC 60.059 47.826 0.00 0.00 0.00 5.36
2417 2478 4.384056 AGCATCAGAACTCGATAAATGGG 58.616 43.478 0.00 0.00 0.00 4.00
2418 2479 5.588568 GAGCATCAGAACTCGATAAATGG 57.411 43.478 0.00 0.00 33.17 3.16
2427 2488 3.059884 TGTTTGTCGAGCATCAGAACTC 58.940 45.455 0.00 0.00 33.17 3.01
2428 2489 2.802816 GTGTTTGTCGAGCATCAGAACT 59.197 45.455 0.00 0.00 33.17 3.01
2429 2490 2.802816 AGTGTTTGTCGAGCATCAGAAC 59.197 45.455 0.00 0.00 33.17 3.01
2430 2491 3.111853 AGTGTTTGTCGAGCATCAGAA 57.888 42.857 0.00 0.00 33.17 3.02
2431 2492 2.820059 AGTGTTTGTCGAGCATCAGA 57.180 45.000 0.00 0.00 33.17 3.27
2432 2493 3.317150 TGTAGTGTTTGTCGAGCATCAG 58.683 45.455 0.00 0.00 33.17 2.90
2433 2494 3.378911 TGTAGTGTTTGTCGAGCATCA 57.621 42.857 0.00 0.00 33.17 3.07
2434 2495 4.725556 TTTGTAGTGTTTGTCGAGCATC 57.274 40.909 0.00 0.00 0.00 3.91
2435 2496 5.493133 TTTTTGTAGTGTTTGTCGAGCAT 57.507 34.783 0.00 0.00 0.00 3.79
2436 2497 4.948608 TTTTTGTAGTGTTTGTCGAGCA 57.051 36.364 0.00 0.00 0.00 4.26
2454 2515 8.680903 CAGAAGGTCACTGATTAGCATATTTTT 58.319 33.333 0.00 0.00 37.54 1.94
2455 2516 7.831193 ACAGAAGGTCACTGATTAGCATATTTT 59.169 33.333 0.00 0.00 38.55 1.82
2456 2517 7.341805 ACAGAAGGTCACTGATTAGCATATTT 58.658 34.615 0.00 0.00 38.55 1.40
2457 2518 6.893583 ACAGAAGGTCACTGATTAGCATATT 58.106 36.000 0.00 0.00 38.55 1.28
2458 2519 6.491714 ACAGAAGGTCACTGATTAGCATAT 57.508 37.500 0.00 0.00 38.55 1.78
2459 2520 5.907207 GACAGAAGGTCACTGATTAGCATA 58.093 41.667 0.00 0.00 46.19 3.14
2460 2521 4.764172 GACAGAAGGTCACTGATTAGCAT 58.236 43.478 0.00 0.00 46.19 3.79
2461 2522 4.193826 GACAGAAGGTCACTGATTAGCA 57.806 45.455 0.00 0.00 46.19 3.49
2472 2533 8.948631 TGTTCATAGATTTATGACAGAAGGTC 57.051 34.615 5.48 0.00 44.03 3.85
2473 2534 9.911788 AATGTTCATAGATTTATGACAGAAGGT 57.088 29.630 5.48 0.00 44.03 3.50
2486 2547 9.439500 CCAATTGGTTGAAAATGTTCATAGATT 57.561 29.630 16.90 0.00 43.29 2.40
2512 2573 2.235891 CCCTCCCAAACAGGTTACAAC 58.764 52.381 0.00 0.00 34.66 3.32
2513 2574 1.854280 ACCCTCCCAAACAGGTTACAA 59.146 47.619 0.00 0.00 34.66 2.41
2514 2575 1.422402 GACCCTCCCAAACAGGTTACA 59.578 52.381 0.00 0.00 34.66 2.41
2515 2576 1.271762 GGACCCTCCCAAACAGGTTAC 60.272 57.143 0.00 0.00 34.66 2.50
2516 2577 1.069775 GGACCCTCCCAAACAGGTTA 58.930 55.000 0.00 0.00 34.66 2.85
2517 2578 0.996762 TGGACCCTCCCAAACAGGTT 60.997 55.000 0.00 0.00 35.03 3.50
2518 2579 0.996762 TTGGACCCTCCCAAACAGGT 60.997 55.000 0.00 0.00 42.75 4.00
2519 2580 1.850549 TTGGACCCTCCCAAACAGG 59.149 57.895 0.00 0.00 42.75 4.00
2531 2592 4.052608 CGTTATGTTTTTGGGTTTGGACC 58.947 43.478 0.00 0.00 45.75 4.46
2532 2593 4.741185 GTCGTTATGTTTTTGGGTTTGGAC 59.259 41.667 0.00 0.00 0.00 4.02
2533 2594 4.202131 GGTCGTTATGTTTTTGGGTTTGGA 60.202 41.667 0.00 0.00 0.00 3.53
2534 2595 4.052608 GGTCGTTATGTTTTTGGGTTTGG 58.947 43.478 0.00 0.00 0.00 3.28
2535 2596 4.683832 TGGTCGTTATGTTTTTGGGTTTG 58.316 39.130 0.00 0.00 0.00 2.93
2536 2597 5.538849 ATGGTCGTTATGTTTTTGGGTTT 57.461 34.783 0.00 0.00 0.00 3.27
2537 2598 5.538849 AATGGTCGTTATGTTTTTGGGTT 57.461 34.783 0.00 0.00 0.00 4.11
2538 2599 5.538849 AAATGGTCGTTATGTTTTTGGGT 57.461 34.783 0.00 0.00 0.00 4.51
2539 2600 5.178438 CCAAAATGGTCGTTATGTTTTTGGG 59.822 40.000 14.26 0.00 44.59 4.12
2540 2601 6.221858 CCAAAATGGTCGTTATGTTTTTGG 57.778 37.500 9.73 9.73 43.62 3.28
2578 2639 9.586435 GCTTACAGCCATTTTGAGTAAATAAAT 57.414 29.630 0.00 0.00 34.19 1.40
2579 2640 8.580720 TGCTTACAGCCATTTTGAGTAAATAAA 58.419 29.630 0.00 0.00 41.51 1.40
2580 2641 8.116651 TGCTTACAGCCATTTTGAGTAAATAA 57.883 30.769 0.00 0.00 41.51 1.40
2581 2642 7.609918 TCTGCTTACAGCCATTTTGAGTAAATA 59.390 33.333 0.00 0.00 44.10 1.40
2582 2643 6.434028 TCTGCTTACAGCCATTTTGAGTAAAT 59.566 34.615 0.00 0.00 44.10 1.40
2583 2644 5.767665 TCTGCTTACAGCCATTTTGAGTAAA 59.232 36.000 0.00 0.00 44.10 2.01
2584 2645 5.312895 TCTGCTTACAGCCATTTTGAGTAA 58.687 37.500 0.00 0.00 44.10 2.24
2585 2646 4.905429 TCTGCTTACAGCCATTTTGAGTA 58.095 39.130 0.00 0.00 44.10 2.59
2586 2647 3.754965 TCTGCTTACAGCCATTTTGAGT 58.245 40.909 0.00 0.00 44.10 3.41
2587 2648 4.978083 ATCTGCTTACAGCCATTTTGAG 57.022 40.909 0.00 0.00 44.10 3.02
2588 2649 5.709631 TGTTATCTGCTTACAGCCATTTTGA 59.290 36.000 0.00 0.00 44.10 2.69
2589 2650 5.801947 GTGTTATCTGCTTACAGCCATTTTG 59.198 40.000 0.00 0.00 44.10 2.44
2590 2651 5.711976 AGTGTTATCTGCTTACAGCCATTTT 59.288 36.000 0.00 0.00 44.10 1.82
2591 2652 5.124457 CAGTGTTATCTGCTTACAGCCATTT 59.876 40.000 0.00 0.00 44.10 2.32
2592 2653 4.637534 CAGTGTTATCTGCTTACAGCCATT 59.362 41.667 0.00 0.00 44.10 3.16
2593 2654 4.194640 CAGTGTTATCTGCTTACAGCCAT 58.805 43.478 0.00 0.00 44.10 4.40
2594 2655 3.007940 ACAGTGTTATCTGCTTACAGCCA 59.992 43.478 0.00 0.00 44.10 4.75
2595 2656 3.600388 ACAGTGTTATCTGCTTACAGCC 58.400 45.455 0.00 0.00 44.10 4.85
2596 2657 5.613358 AAACAGTGTTATCTGCTTACAGC 57.387 39.130 9.37 0.00 44.10 4.40
2597 2658 7.891183 AGTAAACAGTGTTATCTGCTTACAG 57.109 36.000 9.37 0.00 43.51 2.74
2598 2659 7.386848 GGAAGTAAACAGTGTTATCTGCTTACA 59.613 37.037 9.37 0.00 43.51 2.41
2599 2660 7.603024 AGGAAGTAAACAGTGTTATCTGCTTAC 59.397 37.037 9.37 9.69 42.43 2.34
2600 2661 7.676947 AGGAAGTAAACAGTGTTATCTGCTTA 58.323 34.615 9.37 0.00 38.84 3.09
2601 2662 6.534634 AGGAAGTAAACAGTGTTATCTGCTT 58.465 36.000 9.37 8.94 38.84 3.91
2602 2663 6.014156 AGAGGAAGTAAACAGTGTTATCTGCT 60.014 38.462 9.37 5.11 38.84 4.24
2603 2664 6.091441 CAGAGGAAGTAAACAGTGTTATCTGC 59.909 42.308 9.37 9.05 38.84 4.26
2604 2665 7.378966 TCAGAGGAAGTAAACAGTGTTATCTG 58.621 38.462 9.37 12.97 40.80 2.90
2605 2666 7.540474 TCAGAGGAAGTAAACAGTGTTATCT 57.460 36.000 9.37 7.89 0.00 1.98
2606 2667 8.779354 AATCAGAGGAAGTAAACAGTGTTATC 57.221 34.615 9.37 5.64 0.00 1.75
2607 2668 9.654663 GTAATCAGAGGAAGTAAACAGTGTTAT 57.345 33.333 9.37 2.64 0.00 1.89
2608 2669 7.811236 CGTAATCAGAGGAAGTAAACAGTGTTA 59.189 37.037 9.37 0.00 0.00 2.41
2609 2670 6.645415 CGTAATCAGAGGAAGTAAACAGTGTT 59.355 38.462 1.64 1.64 0.00 3.32
2610 2671 6.015688 TCGTAATCAGAGGAAGTAAACAGTGT 60.016 38.462 0.00 0.00 0.00 3.55
2611 2672 6.308282 GTCGTAATCAGAGGAAGTAAACAGTG 59.692 42.308 0.00 0.00 0.00 3.66
2612 2673 6.388278 GTCGTAATCAGAGGAAGTAAACAGT 58.612 40.000 0.00 0.00 0.00 3.55
2613 2674 5.805994 GGTCGTAATCAGAGGAAGTAAACAG 59.194 44.000 0.00 0.00 0.00 3.16
2614 2675 5.244402 TGGTCGTAATCAGAGGAAGTAAACA 59.756 40.000 0.00 0.00 0.00 2.83
2615 2676 5.717119 TGGTCGTAATCAGAGGAAGTAAAC 58.283 41.667 0.00 0.00 0.00 2.01
2616 2677 5.988310 TGGTCGTAATCAGAGGAAGTAAA 57.012 39.130 0.00 0.00 0.00 2.01
2617 2678 5.988310 TTGGTCGTAATCAGAGGAAGTAA 57.012 39.130 0.00 0.00 0.00 2.24
2618 2679 6.540438 AATTGGTCGTAATCAGAGGAAGTA 57.460 37.500 0.00 0.00 0.00 2.24
2619 2680 5.422214 AATTGGTCGTAATCAGAGGAAGT 57.578 39.130 0.00 0.00 0.00 3.01
2620 2681 7.843490 TTAAATTGGTCGTAATCAGAGGAAG 57.157 36.000 0.00 0.00 0.00 3.46
2621 2682 8.673711 CATTTAAATTGGTCGTAATCAGAGGAA 58.326 33.333 0.00 0.00 0.00 3.36
2622 2683 7.282224 CCATTTAAATTGGTCGTAATCAGAGGA 59.718 37.037 0.00 0.00 0.00 3.71
2623 2684 7.067008 ACCATTTAAATTGGTCGTAATCAGAGG 59.933 37.037 13.40 3.55 0.00 3.69
2624 2685 7.985476 ACCATTTAAATTGGTCGTAATCAGAG 58.015 34.615 13.40 0.00 0.00 3.35
2625 2686 7.931578 ACCATTTAAATTGGTCGTAATCAGA 57.068 32.000 13.40 0.00 0.00 3.27
2634 2695 7.033185 AGCAAATACGACCATTTAAATTGGTC 58.967 34.615 24.93 24.93 46.24 4.02
2635 2696 6.930731 AGCAAATACGACCATTTAAATTGGT 58.069 32.000 17.10 17.10 38.87 3.67
2636 2697 8.918961 TTAGCAAATACGACCATTTAAATTGG 57.081 30.769 12.43 12.43 0.00 3.16
2639 2700 9.445786 CGAATTAGCAAATACGACCATTTAAAT 57.554 29.630 0.00 0.00 0.00 1.40
2640 2701 7.911205 CCGAATTAGCAAATACGACCATTTAAA 59.089 33.333 0.00 0.00 0.00 1.52
2641 2702 7.280428 TCCGAATTAGCAAATACGACCATTTAA 59.720 33.333 0.00 0.00 0.00 1.52
2642 2703 6.762187 TCCGAATTAGCAAATACGACCATTTA 59.238 34.615 0.00 0.00 0.00 1.40
2643 2704 5.587043 TCCGAATTAGCAAATACGACCATTT 59.413 36.000 0.00 0.00 0.00 2.32
2644 2705 5.120399 TCCGAATTAGCAAATACGACCATT 58.880 37.500 0.00 0.00 0.00 3.16
2645 2706 4.699637 TCCGAATTAGCAAATACGACCAT 58.300 39.130 0.00 0.00 0.00 3.55
2646 2707 4.126208 TCCGAATTAGCAAATACGACCA 57.874 40.909 0.00 0.00 0.00 4.02
2647 2708 5.440685 CAATCCGAATTAGCAAATACGACC 58.559 41.667 0.00 0.00 0.00 4.79
2648 2709 4.904154 GCAATCCGAATTAGCAAATACGAC 59.096 41.667 0.00 0.00 0.00 4.34
2649 2710 4.318475 CGCAATCCGAATTAGCAAATACGA 60.318 41.667 0.00 0.00 40.02 3.43
2650 2711 3.900116 CGCAATCCGAATTAGCAAATACG 59.100 43.478 0.00 0.00 40.02 3.06
2651 2712 4.844267 ACGCAATCCGAATTAGCAAATAC 58.156 39.130 0.00 0.00 41.02 1.89
2652 2713 4.024387 GGACGCAATCCGAATTAGCAAATA 60.024 41.667 0.00 0.00 37.88 1.40
2653 2714 3.243068 GGACGCAATCCGAATTAGCAAAT 60.243 43.478 0.00 0.00 37.88 2.32
2654 2715 2.096819 GGACGCAATCCGAATTAGCAAA 59.903 45.455 0.00 0.00 37.88 3.68
2655 2716 1.668751 GGACGCAATCCGAATTAGCAA 59.331 47.619 0.00 0.00 37.88 3.91
2656 2717 1.295792 GGACGCAATCCGAATTAGCA 58.704 50.000 0.00 0.00 37.88 3.49
2683 2744 1.293179 CTGCTGATGTGGACGTCCA 59.707 57.895 33.23 33.23 45.30 4.02
2684 2745 0.320771 AACTGCTGATGTGGACGTCC 60.321 55.000 28.17 28.17 0.00 4.79
2685 2746 1.195448 CAAACTGCTGATGTGGACGTC 59.805 52.381 7.13 7.13 0.00 4.34
2686 2747 1.202639 TCAAACTGCTGATGTGGACGT 60.203 47.619 0.00 0.00 0.00 4.34
2687 2748 1.511850 TCAAACTGCTGATGTGGACG 58.488 50.000 0.00 0.00 0.00 4.79
2688 2749 2.030805 GGTTCAAACTGCTGATGTGGAC 60.031 50.000 0.00 0.00 0.00 4.02
2689 2750 2.229792 GGTTCAAACTGCTGATGTGGA 58.770 47.619 0.00 0.00 0.00 4.02
2690 2751 1.270550 GGGTTCAAACTGCTGATGTGG 59.729 52.381 0.00 0.00 0.00 4.17
2691 2752 2.233271 AGGGTTCAAACTGCTGATGTG 58.767 47.619 0.00 0.00 0.00 3.21
2692 2753 2.624838 CAAGGGTTCAAACTGCTGATGT 59.375 45.455 0.00 0.00 0.00 3.06
2693 2754 2.029649 CCAAGGGTTCAAACTGCTGATG 60.030 50.000 0.00 0.00 0.00 3.07
2694 2755 2.242043 CCAAGGGTTCAAACTGCTGAT 58.758 47.619 0.00 0.00 0.00 2.90
2695 2756 1.691196 CCAAGGGTTCAAACTGCTGA 58.309 50.000 0.00 0.00 0.00 4.26
2696 2757 0.032540 GCCAAGGGTTCAAACTGCTG 59.967 55.000 0.00 0.00 0.00 4.41
2697 2758 0.396974 TGCCAAGGGTTCAAACTGCT 60.397 50.000 0.00 0.00 0.00 4.24
2698 2759 0.249447 GTGCCAAGGGTTCAAACTGC 60.249 55.000 0.00 0.00 0.00 4.40
2699 2760 1.402787 AGTGCCAAGGGTTCAAACTG 58.597 50.000 0.00 0.00 0.00 3.16
2700 2761 3.157087 CATAGTGCCAAGGGTTCAAACT 58.843 45.455 0.00 0.00 0.00 2.66
2701 2762 3.153919 TCATAGTGCCAAGGGTTCAAAC 58.846 45.455 0.00 0.00 0.00 2.93
2702 2763 3.181434 ACTCATAGTGCCAAGGGTTCAAA 60.181 43.478 0.00 0.00 0.00 2.69
2703 2764 2.375174 ACTCATAGTGCCAAGGGTTCAA 59.625 45.455 0.00 0.00 0.00 2.69
2704 2765 1.985159 ACTCATAGTGCCAAGGGTTCA 59.015 47.619 0.00 0.00 0.00 3.18
2705 2766 2.789409 ACTCATAGTGCCAAGGGTTC 57.211 50.000 0.00 0.00 0.00 3.62
2706 2767 3.525800 AAACTCATAGTGCCAAGGGTT 57.474 42.857 0.00 0.00 0.00 4.11
2707 2768 3.525800 AAAACTCATAGTGCCAAGGGT 57.474 42.857 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.