AutoCloner

Multiple sequence alignment - TraesCS6A01G395600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G395600	chr6A	100.000	3032	0	0	1	3032	608359382	608356351	0.000000e+00	5600
1	TraesCS6A01G395600	chr6A	83.993	1162	165	12	1006	2154	69350055	69351208	0.000000e+00	1096
2	TraesCS6A01G395600	chr6A	82.176	965	124	19	1	920	69348971	69349932	0.000000e+00	785
3	TraesCS6A01G395600	chr6D	92.846	3089	121	38	1	3032	461630278	461627233	0.000000e+00	4388
4	TraesCS6A01G395600	chr6B	91.174	1405	104	13	1000	2397	703448927	703447536	0.000000e+00	1890
5	TraesCS6A01G395600	chr6B	89.463	1528	111	22	1004	2521	703400835	703399348	0.000000e+00	1884
6	TraesCS6A01G395600	chr6B	85.392	1198	142	18	1004	2170	703474528	703473333	0.000000e+00	1212
7	TraesCS6A01G395600	chr6B	83.799	1253	152	26	1004	2241	703561331	703560115	0.000000e+00	1142
8	TraesCS6A01G395600	chr6B	84.174	1150	160	14	1001	2134	125611588	125612731	0.000000e+00	1096
9	TraesCS6A01G395600	chr6B	83.435	1153	164	13	1001	2134	125533265	125534409	0.000000e+00	1046
10	TraesCS6A01G395600	chr6B	81.825	1271	188	25	1004	2241	703436251	703434991	0.000000e+00	1027
11	TraesCS6A01G395600	chr6B	84.053	1066	154	7	1000	2050	703502174	703501110	0.000000e+00	1013
12	TraesCS6A01G395600	chr6B	83.427	1068	159	9	1000	2050	703429568	703428502	0.000000e+00	976
13	TraesCS6A01G395600	chr6B	84.835	877	109	13	999	1859	703509765	703508897	0.000000e+00	861
14	TraesCS6A01G395600	chr6B	81.244	997	114	41	2	930	703562440	703561449	0.000000e+00	737
15	TraesCS6A01G395600	chr6B	80.749	961	140	16	1	920	125532161	125533117	0.000000e+00	708
16	TraesCS6A01G395600	chr6B	82.431	831	109	8	129	927	703503146	703502321	0.000000e+00	691
17	TraesCS6A01G395600	chr6B	82.396	818	107	8	142	927	703430524	703429712	0.000000e+00	678
18	TraesCS6A01G395600	chr6B	79.600	1000	122	43	1	920	703450093	703449096	2.550000e-180	641
19	TraesCS6A01G395600	chr6B	83.256	645	51	28	341	931	703510512	703509871	9.560000e-150	540
20	TraesCS6A01G395600	chr6B	88.491	391	45	0	541	931	703401363	703400973	9.840000e-130	473
21	TraesCS6A01G395600	chr6B	87.786	393	44	2	541	931	703475056	703474666	9.910000e-125	457
22	TraesCS6A01G395600	chr6B	82.609	460	68	10	4	456	703437325	703436871	2.190000e-106	396
23	TraesCS6A01G395600	chr6B	81.184	473	75	4	1671	2134	125480698	125481165	4.780000e-98	368
24	TraesCS6A01G395600	chr6B	83.601	311	41	8	151	453	703475506	703475198	1.780000e-72	283
25	TraesCS6A01G395600	chr6B	83.280	311	42	8	151	453	703401813	703401505	8.280000e-71	278
26	TraesCS6A01G395600	chr6B	77.322	463	88	14	1	450	125604356	125604814	1.080000e-64	257
27	TraesCS6A01G395600	chr6B	80.328	366	37	19	2165	2522	703473164	703472826	8.400000e-61	244
28	TraesCS6A01G395600	chr7A	90.609	394	29	4	2634	3024	247210858	247210470	1.610000e-142	516
29	TraesCS6A01G395600	chr7A	89.460	389	34	5	2645	3030	673928020	673927636	4.540000e-133	484
30	TraesCS6A01G395600	chr7A	75.938	320	50	17	161	456	666683440	666683124	4.080000e-29	139
31	TraesCS6A01G395600	chr7D	89.594	394	32	5	2640	3030	408463321	408462934	2.720000e-135	492
32	TraesCS6A01G395600	chr1A	89.196	398	35	5	2636	3030	539269267	539268875	9.770000e-135	490
33	TraesCS6A01G395600	chr1A	89.313	393	37	3	2634	3024	358829295	358828906	3.510000e-134	488
34	TraesCS6A01G395600	chr3A	89.114	395	36	4	2639	3030	387303161	387303551	4.540000e-133	484
35	TraesCS6A01G395600	chr3A	88.471	399	40	4	2634	3030	313218220	313218614	7.610000e-131	477
36	TraesCS6A01G395600	chr5A	88.500	400	38	5	2634	3030	637772145	637772539	7.610000e-131	477
37	TraesCS6A01G395600	chr5A	86.417	427	51	5	2606	3030	499662886	499663307	7.660000e-126	460
38	TraesCS6A01G395600	chr4A	87.500	112	13	1	2510	2621	172315203	172315313	8.820000e-26	128
39	TraesCS6A01G395600	chr2B	86.441	118	15	1	2511	2627	368413403	368413520	8.820000e-26	128
40	TraesCS6A01G395600	chr2B	85.981	107	15	0	2521	2627	739043708	739043602	6.870000e-22	115
41	TraesCS6A01G395600	chr2B	83.478	115	19	0	2520	2634	795472253	795472139	1.150000e-19	108
42	TraesCS6A01G395600	chrUn	85.965	114	16	0	2521	2634	96478384	96478271	4.110000e-24	122
43	TraesCS6A01G395600	chr7B	86.916	107	14	0	2521	2627	479101330	479101436	1.480000e-23	121
44	TraesCS6A01G395600	chr4B	86.239	109	14	1	2520	2627	204407460	204407568	1.910000e-22	117
45	TraesCS6A01G395600	chr2A	84.483	116	16	2	2520	2633	117390351	117390466	2.470000e-21	113

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G395600	chr6A	608356351	608359382	3031	True	5600.000000	5600	100.00000	1	3032	1	chr6A.!!$R1	3031
1	TraesCS6A01G395600	chr6A	69348971	69351208	2237	False	940.500000	1096	83.08450	1	2154	2	chr6A.!!$F1	2153
2	TraesCS6A01G395600	chr6D	461627233	461630278	3045	True	4388.000000	4388	92.84600	1	3032	1	chr6D.!!$R1	3031
3	TraesCS6A01G395600	chr6B	703447536	703450093	2557	True	1265.500000	1890	85.38700	1	2397	2	chr6B.!!$R4	2396
4	TraesCS6A01G395600	chr6B	125611588	125612731	1143	False	1096.000000	1096	84.17400	1001	2134	1	chr6B.!!$F3	1133
5	TraesCS6A01G395600	chr6B	703560115	703562440	2325	True	939.500000	1142	82.52150	2	2241	2	chr6B.!!$R8	2239
6	TraesCS6A01G395600	chr6B	703399348	703401813	2465	True	878.333333	1884	87.07800	151	2521	3	chr6B.!!$R1	2370
7	TraesCS6A01G395600	chr6B	125532161	125534409	2248	False	877.000000	1046	82.09200	1	2134	2	chr6B.!!$F4	2133
8	TraesCS6A01G395600	chr6B	703501110	703503146	2036	True	852.000000	1013	83.24200	129	2050	2	chr6B.!!$R6	1921
9	TraesCS6A01G395600	chr6B	703428502	703430524	2022	True	827.000000	976	82.91150	142	2050	2	chr6B.!!$R2	1908
10	TraesCS6A01G395600	chr6B	703434991	703437325	2334	True	711.500000	1027	82.21700	4	2241	2	chr6B.!!$R3	2237
11	TraesCS6A01G395600	chr6B	703508897	703510512	1615	True	700.500000	861	84.04550	341	1859	2	chr6B.!!$R7	1518
12	TraesCS6A01G395600	chr6B	703472826	703475506	2680	True	549.000000	1212	84.27675	151	2522	4	chr6B.!!$R5	2371

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
124	143	0.097674	GTGAATTGCCGTGCAGCTAG	59.902	55.0	0.0	0.0	40.61	3.42	F
1161	1366	0.327924	ATGGTTCCTGGCGACAATCA	59.672	50.0	0.0	0.0	42.06	2.57	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1637	1858	1.884579	ACAAGCTCTTGCACCATTCAG	59.115	47.619	9.36	0.0	44.03	3.02	R
2628	3110	2.287069	CGAATAGTGCGACCCTAGACTG	60.287	54.545	0.00	0.0	0.00	3.51	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
113	132	4.875544	TTATTCCGCAGTAGTGAATTGC	57.124	40.909	0.42	0.00	34.58	3.56
124	143	0.097674	GTGAATTGCCGTGCAGCTAG	59.902	55.000	0.00	0.00	40.61	3.42
126	145	0.654683	GAATTGCCGTGCAGCTAGAG	59.345	55.000	0.00	0.00	40.61	2.43
127	146	1.372087	AATTGCCGTGCAGCTAGAGC	61.372	55.000	0.00	0.00	40.61	4.09
139	158	3.243670	GCAGCTAGAGCACACATCATCTA	60.244	47.826	4.01	0.00	45.16	1.98
275	294	1.407437	GCAATGTGGACCTCCTACCTG	60.407	57.143	0.00	0.00	36.82	4.00
282	304	1.482741	GGACCTCCTACCTGGGGATAC	60.483	61.905	0.00	0.00	39.16	2.24
538	596	5.310720	CCTTGTGGCTACCAATTAAAGTC	57.689	43.478	0.00	0.00	34.18	3.01
546	628	5.116882	GCTACCAATTAAAGTCGATGTCCT	58.883	41.667	0.00	0.00	0.00	3.85
552	658	6.986817	CCAATTAAAGTCGATGTCCTACAGAT	59.013	38.462	0.00	0.00	0.00	2.90
597	703	3.826729	GGGCTTAGTGACCTTTGACAAAT	59.173	43.478	0.05	0.00	41.93	2.32
637	743	5.471456	ACACACTTCTGAGATCAAAATCACC	59.529	40.000	0.00	0.00	34.07	4.02
743	849	4.321230	GGTTTCATCAAGGGCAGTAACTTG	60.321	45.833	0.00	0.00	44.09	3.16
809	915	0.376152	CGGTGATTGCACATGAGCTC	59.624	55.000	16.24	6.82	46.96	4.09
812	918	1.326852	GTGATTGCACATGAGCTCTCG	59.673	52.381	16.19	8.34	44.51	4.04
818	924	2.231235	TGCACATGAGCTCTCGTTTCTA	59.769	45.455	16.19	0.00	34.99	2.10
884	990	2.434884	CTGCCAATCGTGAGCGGT	60.435	61.111	0.00	0.00	38.89	5.68
897	1003	3.181530	CGTGAGCGGTTTCATTTCACTAG	60.182	47.826	0.00	0.00	36.80	2.57
943	1049	4.163839	AGCCATAATTTTTATTGCTGCCCA	59.836	37.500	0.00	0.00	0.00	5.36
973	1127	8.677870	AAAGTATCTGAGATAGGGCAGATTAT	57.322	34.615	1.68	0.00	46.65	1.28
974	1128	9.775539	AAAGTATCTGAGATAGGGCAGATTATA	57.224	33.333	1.68	0.00	46.65	0.98
980	1134	7.123397	TCTGAGATAGGGCAGATTATATGTGTC	59.877	40.741	0.00	0.00	36.31	3.67
982	1136	7.235399	TGAGATAGGGCAGATTATATGTGTCAA	59.765	37.037	0.00	0.00	28.34	3.18
983	1137	8.155620	AGATAGGGCAGATTATATGTGTCAAT	57.844	34.615	0.00	0.00	28.34	2.57
984	1138	9.271921	AGATAGGGCAGATTATATGTGTCAATA	57.728	33.333	0.00	0.00	28.34	1.90
985	1139	9.539825	GATAGGGCAGATTATATGTGTCAATAG	57.460	37.037	0.00	0.00	28.34	1.73
986	1140	7.321717	AGGGCAGATTATATGTGTCAATAGT	57.678	36.000	0.00	0.00	28.34	2.12
987	1141	7.390027	AGGGCAGATTATATGTGTCAATAGTC	58.610	38.462	0.00	0.00	28.34	2.59
988	1142	7.016563	AGGGCAGATTATATGTGTCAATAGTCA	59.983	37.037	0.00	0.00	28.34	3.41
989	1143	7.661437	GGGCAGATTATATGTGTCAATAGTCAA	59.339	37.037	0.00	0.00	28.34	3.18
990	1144	9.224267	GGCAGATTATATGTGTCAATAGTCAAT	57.776	33.333	0.00	0.00	0.00	2.57
1161	1366	0.327924	ATGGTTCCTGGCGACAATCA	59.672	50.000	0.00	0.00	42.06	2.57
1637	1858	3.243704	CCTGAGCTACTACCTGAAGATGC	60.244	52.174	0.00	0.00	0.00	3.91
1654	1875	0.251033	TGCTGAATGGTGCAAGAGCT	60.251	50.000	0.00	0.00	42.74	4.09
1688	1909	0.179179	GAGAAAGATGCCAAGCGTGC	60.179	55.000	0.00	0.00	0.00	5.34
1713	1942	3.882888	TCATTGGCAATTATTCGAGGGAC	59.117	43.478	10.65	0.00	0.00	4.46
1911	2182	1.518572	ATCGGACAACATCGACGGC	60.519	57.895	0.00	0.00	38.25	5.68
2226	2705	6.349280	GCTGCCTGTAAGTTAATTGTTCATGA	60.349	38.462	0.00	0.00	0.00	3.07
2275	2754	3.813166	TGTTTCTACTGCTTGGTTACAGC	59.187	43.478	0.00	0.00	37.42	4.40
2485	2964	3.439540	CAATCCAACGGCGGGTGG	61.440	66.667	21.84	21.84	0.00	4.61
2642	3124	3.118149	TCTGTATACAGTCTAGGGTCGCA	60.118	47.826	27.83	5.71	44.12	5.10
2653	3135	0.172803	AGGGTCGCACTATTCGTCAC	59.827	55.000	0.00	0.00	0.00	3.67
2655	3137	0.172803	GGTCGCACTATTCGTCACCT	59.827	55.000	0.00	0.00	0.00	4.00
2659	3141	1.369625	GCACTATTCGTCACCTTGGG	58.630	55.000	0.00	0.00	0.00	4.12
2699	3181	7.757242	ATTCACTCCCTCTCTATTTTAAGGT	57.243	36.000	0.00	0.00	0.00	3.50
2700	3182	6.793505	TCACTCCCTCTCTATTTTAAGGTC	57.206	41.667	0.00	0.00	0.00	3.85
2701	3183	6.261435	TCACTCCCTCTCTATTTTAAGGTCA	58.739	40.000	0.00	0.00	0.00	4.02
2702	3184	6.729100	TCACTCCCTCTCTATTTTAAGGTCAA	59.271	38.462	0.00	0.00	0.00	3.18
2703	3185	7.403231	TCACTCCCTCTCTATTTTAAGGTCAAT	59.597	37.037	0.00	0.00	0.00	2.57
2704	3186	7.497249	CACTCCCTCTCTATTTTAAGGTCAATG	59.503	40.741	0.00	0.00	0.00	2.82
2705	3187	6.357367	TCCCTCTCTATTTTAAGGTCAATGC	58.643	40.000	0.00	0.00	0.00	3.56
2706	3188	6.069673	TCCCTCTCTATTTTAAGGTCAATGCA	60.070	38.462	0.00	0.00	0.00	3.96
2707	3189	6.774656	CCCTCTCTATTTTAAGGTCAATGCAT	59.225	38.462	0.00	0.00	0.00	3.96
2708	3190	7.040823	CCCTCTCTATTTTAAGGTCAATGCATC	60.041	40.741	0.00	0.00	0.00	3.91
2709	3191	7.307632	CCTCTCTATTTTAAGGTCAATGCATCG	60.308	40.741	0.00	0.00	0.00	3.84
2710	3192	7.047891	TCTCTATTTTAAGGTCAATGCATCGT	58.952	34.615	0.00	0.00	0.00	3.73
2711	3193	8.201464	TCTCTATTTTAAGGTCAATGCATCGTA	58.799	33.333	0.00	0.00	0.00	3.43
2712	3194	8.902540	TCTATTTTAAGGTCAATGCATCGTAT	57.097	30.769	0.00	0.00	0.00	3.06
2719	3201	6.377327	AGGTCAATGCATCGTATTTTTAGG	57.623	37.500	0.00	0.00	0.00	2.69
2729	3211	7.745594	TGCATCGTATTTTTAGGTTTCGTAAAC	59.254	33.333	0.00	0.00	40.65	2.01
2798	3283	7.748691	ACCCGCCGTAAATATTTTATGTTAT	57.251	32.000	5.91	0.00	0.00	1.89
2869	3354	9.420118	TGCAATATTTCTGGTTTTATGACCTAT	57.580	29.630	0.00	0.00	40.47	2.57
2944	3429	9.522804	TGAAACTATTTGTATTCCAAACACAAC	57.477	29.630	0.00	0.00	45.43	3.32
2988	3473	6.749036	AGATTACCTCGGGTGAAGAATAAT	57.251	37.500	5.90	0.00	36.19	1.28

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
96	115	0.739462	CGGCAATTCACTACTGCGGA	60.739	55.000	0.00	0.00	38.32	5.54
99	118	0.179189	GCACGGCAATTCACTACTGC	60.179	55.000	0.00	0.00	35.28	4.40
100	119	1.129251	CTGCACGGCAATTCACTACTG	59.871	52.381	0.35	0.00	38.41	2.74
124	143	4.333913	AGGACATAGATGATGTGTGCTC	57.666	45.455	0.00	0.00	46.41	4.26
275	294	2.936202	ACAATGCAGATGTGTATCCCC	58.064	47.619	7.10	0.00	33.64	4.81
282	304	3.127548	GGACCACTTACAATGCAGATGTG	59.872	47.826	15.99	8.37	32.27	3.21
317	345	9.116067	CCAAACGGTCCAAGAAGAAATAATATA	57.884	33.333	0.00	0.00	0.00	0.86
528	586	8.425577	AATCTGTAGGACATCGACTTTAATTG	57.574	34.615	0.00	0.00	0.00	2.32
538	596	7.208225	TCATCTCTTAATCTGTAGGACATCG	57.792	40.000	0.00	0.00	0.00	3.84
552	658	7.715249	GCCCTTGTTGTACATATCATCTCTTAA	59.285	37.037	0.00	0.00	0.00	1.85
597	703	3.446873	AGTGTGTCATTCAACTGCCAAAA	59.553	39.130	0.00	0.00	0.00	2.44
637	743	5.368256	AAAGCATAGTTCTTTCAGCTGTG	57.632	39.130	14.67	5.73	31.88	3.66
743	849	4.451096	TCCTCAAGCAAGATTTGTCGTAAC	59.549	41.667	0.00	0.00	0.00	2.50
943	1049	4.757692	CCCTATCTCAGATACTTTCCCCT	58.242	47.826	0.00	0.00	0.00	4.79
984	1138	8.954350	CCAAAAGACATCAGAAAGATATTGACT	58.046	33.333	0.00	0.00	34.43	3.41
985	1139	8.950210	TCCAAAAGACATCAGAAAGATATTGAC	58.050	33.333	0.00	0.00	34.43	3.18
986	1140	9.519191	TTCCAAAAGACATCAGAAAGATATTGA	57.481	29.630	0.00	0.00	34.43	2.57
987	1141	9.784680	CTTCCAAAAGACATCAGAAAGATATTG	57.215	33.333	0.00	0.00	32.66	1.90
988	1142	9.525826	ACTTCCAAAAGACATCAGAAAGATATT	57.474	29.630	0.00	0.00	34.12	1.28
1268	1476	2.303022	AGAAGAGCCATCGGAGTTTTGA	59.697	45.455	0.00	0.00	0.00	2.69
1637	1858	1.884579	ACAAGCTCTTGCACCATTCAG	59.115	47.619	9.36	0.00	44.03	3.02
1654	1875	2.623878	TTCTCAACGGCCTTGTACAA	57.376	45.000	8.28	8.28	0.00	2.41
1688	1909	4.261322	CCCTCGAATAATTGCCAATGAGTG	60.261	45.833	0.00	0.00	0.00	3.51
1713	1942	4.829968	ACTCAACTTCAGACATCCATGAG	58.170	43.478	0.00	0.00	39.09	2.90
1717	1946	3.056821	CGGTACTCAACTTCAGACATCCA	60.057	47.826	0.00	0.00	0.00	3.41
1911	2182	3.248029	GCGAGCGCCTTCATATGG	58.752	61.111	2.29	0.00	34.56	2.74
2313	2792	7.229228	TGGTTAACATTCAGATTTACGATCG	57.771	36.000	14.88	14.88	0.00	3.69
2618	3100	4.083217	GCGACCCTAGACTGTATACAGATG	60.083	50.000	34.16	20.39	46.59	2.90
2628	3110	2.287069	CGAATAGTGCGACCCTAGACTG	60.287	54.545	0.00	0.00	0.00	3.51
2653	3135	9.627123	TGAATAATAACTATTCTTCACCCAAGG	57.373	33.333	6.30	0.00	44.38	3.61
2663	3145	9.890915	AGAGAGGGAGTGAATAATAACTATTCT	57.109	33.333	6.17	0.00	44.38	2.40
2675	3157	7.403231	TGACCTTAAAATAGAGAGGGAGTGAAT	59.597	37.037	0.00	0.00	33.51	2.57
2692	3174	9.781834	CTAAAAATACGATGCATTGACCTTAAA	57.218	29.630	21.12	0.71	0.00	1.52
2693	3175	8.402472	CCTAAAAATACGATGCATTGACCTTAA	58.598	33.333	21.12	0.00	0.00	1.85
2694	3176	7.554835	ACCTAAAAATACGATGCATTGACCTTA	59.445	33.333	21.12	2.74	0.00	2.69
2695	3177	6.377146	ACCTAAAAATACGATGCATTGACCTT	59.623	34.615	21.12	7.61	0.00	3.50
2696	3178	5.885912	ACCTAAAAATACGATGCATTGACCT	59.114	36.000	21.12	0.68	0.00	3.85
2697	3179	6.131544	ACCTAAAAATACGATGCATTGACC	57.868	37.500	21.12	0.00	0.00	4.02
2698	3180	7.044966	CGAAACCTAAAAATACGATGCATTGAC	60.045	37.037	21.12	0.00	0.00	3.18
2699	3181	6.964370	CGAAACCTAAAAATACGATGCATTGA	59.036	34.615	21.12	4.83	0.00	2.57
2700	3182	6.745450	ACGAAACCTAAAAATACGATGCATTG	59.255	34.615	12.66	12.66	0.00	2.82
2701	3183	6.848451	ACGAAACCTAAAAATACGATGCATT	58.152	32.000	0.00	0.00	0.00	3.56
2702	3184	6.431198	ACGAAACCTAAAAATACGATGCAT	57.569	33.333	0.00	0.00	0.00	3.96
2703	3185	5.866335	ACGAAACCTAAAAATACGATGCA	57.134	34.783	0.00	0.00	0.00	3.96
2704	3186	7.959109	AGTTTACGAAACCTAAAAATACGATGC	59.041	33.333	0.00	0.00	42.34	3.91
2705	3187	9.815936	AAGTTTACGAAACCTAAAAATACGATG	57.184	29.630	0.00	0.00	42.34	3.84
2707	3189	9.649024	CAAAGTTTACGAAACCTAAAAATACGA	57.351	29.630	0.00	0.00	42.34	3.43
2708	3190	9.437045	ACAAAGTTTACGAAACCTAAAAATACG	57.563	29.630	0.00	0.00	42.34	3.06
2961	3446	3.379372	TCTTCACCCGAGGTAATCTTACG	59.621	47.826	0.00	0.00	32.11	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.