Multiple sequence alignment - TraesCS6A01G394400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G394400 chr6A 100.000 6771 0 0 1 6771 607963607 607956837 0.000000e+00 12504.0
1 TraesCS6A01G394400 chr6A 84.099 283 28 9 682 954 607966301 607966026 2.420000e-64 257.0
2 TraesCS6A01G394400 chr6A 89.604 202 14 4 1446 1647 607961985 607961791 4.050000e-62 250.0
3 TraesCS6A01G394400 chr6A 89.604 202 14 4 1623 1817 607962162 607961961 4.050000e-62 250.0
4 TraesCS6A01G394400 chr6A 87.931 116 7 4 1031 1141 13063122 13063235 5.510000e-26 130.0
5 TraesCS6A01G394400 chr6A 94.545 55 2 1 6477 6531 607957076 607957023 4.350000e-12 84.2
6 TraesCS6A01G394400 chr6A 94.545 55 2 1 6532 6585 607957131 607957077 4.350000e-12 84.2
7 TraesCS6A01G394400 chr6D 92.855 2883 111 34 3664 6475 461363322 461360464 0.000000e+00 4095.0
8 TraesCS6A01G394400 chr6D 91.161 1335 87 15 2266 3579 461364644 461363320 0.000000e+00 1783.0
9 TraesCS6A01G394400 chr6D 89.305 1094 60 24 614 1654 461366284 461365195 0.000000e+00 1319.0
10 TraesCS6A01G394400 chr6D 86.964 1143 88 24 1550 2672 461365476 461364375 0.000000e+00 1229.0
11 TraesCS6A01G394400 chr6D 95.270 296 13 1 6477 6771 461359911 461359616 1.030000e-127 468.0
12 TraesCS6A01G394400 chr6D 88.476 269 28 3 2266 2534 461364508 461364243 8.470000e-84 322.0
13 TraesCS6A01G394400 chr6D 88.846 260 21 4 2401 2657 461364781 461364527 5.100000e-81 313.0
14 TraesCS6A01G394400 chr6D 82.461 382 21 25 614 955 461373166 461372791 6.640000e-75 292.0
15 TraesCS6A01G394400 chr6D 87.432 183 14 4 1 183 461366536 461366363 1.150000e-47 202.0
16 TraesCS6A01G394400 chr6D 86.154 130 14 3 1024 1149 11769773 11769902 3.290000e-28 137.0
17 TraesCS6A01G394400 chr6D 84.507 142 13 5 2535 2672 461364781 461364645 1.530000e-26 132.0
18 TraesCS6A01G394400 chr6B 95.509 1826 64 10 3664 5479 702833780 702831963 0.000000e+00 2902.0
19 TraesCS6A01G394400 chr6B 90.323 1333 100 15 2266 3579 702835100 702833778 0.000000e+00 1720.0
20 TraesCS6A01G394400 chr6B 86.040 1139 107 24 1552 2672 702835937 702834833 0.000000e+00 1175.0
21 TraesCS6A01G394400 chr6B 84.021 1139 58 51 590 1642 702836768 702835668 0.000000e+00 981.0
22 TraesCS6A01G394400 chr6B 87.231 603 39 15 5477 6048 702831930 702831335 0.000000e+00 652.0
23 TraesCS6A01G394400 chr6B 96.000 250 8 2 6523 6771 702830558 702830310 8.180000e-109 405.0
24 TraesCS6A01G394400 chr6B 89.610 308 19 7 6226 6531 702830792 702830496 4.960000e-101 379.0
25 TraesCS6A01G394400 chr6B 87.726 277 30 3 302 575 567709602 567709327 3.050000e-83 320.0
26 TraesCS6A01G394400 chr6B 87.732 269 30 3 2266 2534 702834966 702834701 1.830000e-80 311.0
27 TraesCS6A01G394400 chr6B 86.232 276 30 4 302 575 620266882 620266613 6.640000e-75 292.0
28 TraesCS6A01G394400 chr6B 95.699 93 4 0 3574 3666 270366042 270366134 4.230000e-32 150.0
29 TraesCS6A01G394400 chr6B 91.743 109 8 1 6092 6200 702831066 702830959 4.230000e-32 150.0
30 TraesCS6A01G394400 chr6B 85.586 111 9 2 2548 2657 702835221 702835117 7.180000e-20 110.0
31 TraesCS6A01G394400 chr3A 87.185 1748 147 33 3667 5399 603797194 603795509 0.000000e+00 1916.0
32 TraesCS6A01G394400 chr3A 85.419 1111 108 33 2496 3578 603798280 603797196 0.000000e+00 1105.0
33 TraesCS6A01G394400 chr3A 78.606 617 65 32 674 1270 603799569 603799000 5.030000e-91 346.0
34 TraesCS6A01G394400 chr3A 86.957 276 31 4 302 575 8568524 8568252 8.530000e-79 305.0
35 TraesCS6A01G394400 chr3A 77.524 307 39 10 1745 2048 603798841 603798562 2.530000e-34 158.0
36 TraesCS6A01G394400 chr3B 86.073 1752 160 34 3667 5399 611694201 611692515 0.000000e+00 1807.0
37 TraesCS6A01G394400 chr3B 84.996 1113 112 29 2496 3578 611695290 611694203 0.000000e+00 1079.0
38 TraesCS6A01G394400 chr3B 81.124 498 45 25 678 1154 611696511 611696042 3.000000e-93 353.0
39 TraesCS6A01G394400 chr3B 88.934 244 23 4 300 541 45522860 45522619 1.430000e-76 298.0
40 TraesCS6A01G394400 chr3B 84.244 311 39 5 5477 5778 611692319 611692010 1.850000e-75 294.0
41 TraesCS6A01G394400 chr3B 89.706 136 8 5 6635 6770 611679691 611679562 1.170000e-37 169.0
42 TraesCS6A01G394400 chr3D 89.316 1432 105 25 3667 5084 461206275 461204878 0.000000e+00 1753.0
43 TraesCS6A01G394400 chr3D 85.395 1075 97 32 2534 3578 461207321 461206277 0.000000e+00 1061.0
44 TraesCS6A01G394400 chr3D 77.385 933 132 46 5151 6027 461204721 461203812 1.320000e-131 481.0
45 TraesCS6A01G394400 chr3D 76.687 815 89 47 674 1449 461208630 461207878 6.460000e-95 359.0
46 TraesCS6A01G394400 chr3D 80.308 325 53 6 1722 2041 461207935 461207617 1.140000e-57 235.0
47 TraesCS6A01G394400 chr7D 90.435 230 22 0 302 531 507792719 507792490 3.070000e-78 303.0
48 TraesCS6A01G394400 chr7D 98.876 89 1 0 3573 3661 252265282 252265194 7.030000e-35 159.0
49 TraesCS6A01G394400 chr7D 92.233 103 5 3 3559 3661 516066366 516066267 7.080000e-30 143.0
50 TraesCS6A01G394400 chr7B 86.477 281 30 7 302 575 697805784 697805505 1.100000e-77 302.0
51 TraesCS6A01G394400 chr4D 87.121 264 32 2 302 564 418391793 418391531 1.430000e-76 298.0
52 TraesCS6A01G394400 chr4D 97.826 92 1 1 3574 3665 437508893 437508983 2.530000e-34 158.0
53 TraesCS6A01G394400 chr4B 88.664 247 23 5 302 546 671855430 671855187 5.130000e-76 296.0
54 TraesCS6A01G394400 chr4B 83.886 211 32 2 302 511 650707605 650707396 4.140000e-47 200.0
55 TraesCS6A01G394400 chr4B 95.699 93 4 0 3577 3669 282239874 282239782 4.230000e-32 150.0
56 TraesCS6A01G394400 chr4A 85.818 275 38 1 302 575 731081647 731081921 2.390000e-74 291.0
57 TraesCS6A01G394400 chr4A 100.000 85 0 0 3577 3661 95187556 95187472 2.530000e-34 158.0
58 TraesCS6A01G394400 chr7A 98.837 86 1 0 3577 3662 573673047 573673132 3.270000e-33 154.0
59 TraesCS6A01G394400 chr1D 97.778 90 1 1 3577 3666 90695935 90695847 3.270000e-33 154.0
60 TraesCS6A01G394400 chr1D 83.439 157 14 4 4591 4746 471292222 471292367 1.180000e-27 135.0
61 TraesCS6A01G394400 chr5B 95.699 93 4 0 3577 3669 253207161 253207069 4.230000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G394400 chr6A 607956837 607963607 6770 True 12504.000000 12504 100.00000 1 6771 1 chr6A.!!$R1 6770
1 TraesCS6A01G394400 chr6A 607961791 607966301 4510 True 252.333333 257 87.76900 682 1817 3 chr6A.!!$R3 1135
2 TraesCS6A01G394400 chr6D 461359616 461366536 6920 True 1095.888889 4095 89.42400 1 6771 9 chr6D.!!$R2 6770
3 TraesCS6A01G394400 chr6B 702830310 702836768 6458 True 878.500000 2902 89.37950 590 6771 10 chr6B.!!$R3 6181
4 TraesCS6A01G394400 chr3A 603795509 603799569 4060 True 881.250000 1916 82.18350 674 5399 4 chr3A.!!$R2 4725
5 TraesCS6A01G394400 chr3B 611692010 611696511 4501 True 883.250000 1807 84.10925 678 5778 4 chr3B.!!$R3 5100
6 TraesCS6A01G394400 chr3D 461203812 461208630 4818 True 777.800000 1753 81.81820 674 6027 5 chr3D.!!$R1 5353

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 221 0.034186 TTGAGGAGGATGGCGCAATT 60.034 50.000 10.83 0.00 0.00 2.32 F
502 503 0.174845 TATGCCGGGTCAGTCTTTCG 59.825 55.000 2.18 0.00 0.00 3.46 F
507 508 0.317479 CGGGTCAGTCTTTCGAAGGT 59.683 55.000 7.20 0.00 0.00 3.50 F
524 525 0.400093 GGTACTCATAGGGGCAGGGT 60.400 60.000 0.00 0.00 0.00 4.34 F
526 527 0.639943 TACTCATAGGGGCAGGGTGA 59.360 55.000 0.00 0.00 0.00 4.02 F
527 528 0.692419 ACTCATAGGGGCAGGGTGAG 60.692 60.000 7.39 7.39 41.47 3.51 F
1989 4855 1.484227 TTCGGCGTATTTCGGATGCG 61.484 55.000 6.85 0.00 40.26 4.73 F
2175 5100 1.517257 GATGACAGAGACGGCACCG 60.517 63.158 7.71 7.71 46.03 4.94 F
2683 5758 2.104792 AGTAATATGCCGGTCATGTGCT 59.895 45.455 18.08 12.56 36.63 4.40 F
3662 6778 0.179009 TATGGGACGGAGGGAGTACG 60.179 60.000 0.00 0.00 0.00 3.67 F
5203 8448 0.034059 CGACTGCTCTGGTGACCTTT 59.966 55.000 2.11 0.00 0.00 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1995 4861 0.310854 GCTTGGAAAGGAACGGTGTG 59.689 55.000 0.00 0.0 46.35 3.82 R
2471 5538 3.896648 AACAAGATACGCCAAACAGTG 57.103 42.857 0.00 0.0 0.00 3.66 R
2518 5585 3.876914 CCAAGATGCGTATTTGCTTAGGA 59.123 43.478 0.00 0.0 35.36 2.94 R
2531 5598 1.081892 CAGGTCAACTCCAAGATGCG 58.918 55.000 0.00 0.0 0.00 4.73 R
2620 5693 5.175859 GGACGATGAGGAAAACAAGATACA 58.824 41.667 0.00 0.0 0.00 2.29 R
2628 5701 3.682858 TCGAAATGGACGATGAGGAAAAC 59.317 43.478 0.00 0.0 34.85 2.43 R
3649 6765 0.038166 TTGGTACGTACTCCCTCCGT 59.962 55.000 24.07 0.0 38.53 4.69 R
3650 6766 1.396653 ATTGGTACGTACTCCCTCCG 58.603 55.000 24.07 0.0 0.00 4.63 R
4501 7634 2.039216 TCGGTTGCAAAGGTATTCCTGA 59.961 45.455 0.00 0.0 44.35 3.86 R
5659 9063 0.179051 CTGCTCCAAGGATGCTCTCC 60.179 60.000 10.43 0.0 45.33 3.71 R
6210 9893 1.205655 GCACTGACAGATAGTGAGGCA 59.794 52.381 10.08 0.0 46.52 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 5.685728 AGAAAGTACTTGCTTTGTTCCTCT 58.314 37.500 10.61 2.00 38.64 3.69
68 69 4.998788 ACTTGCTTTGTTCCTCTTTCAAC 58.001 39.130 0.00 0.00 0.00 3.18
73 74 1.658994 TGTTCCTCTTTCAACGCGTT 58.341 45.000 20.79 20.79 0.00 4.84
85 86 7.408123 TCTTTCAACGCGTTTCAGTTTAATTA 58.592 30.769 24.21 0.00 0.00 1.40
88 89 6.137415 TCAACGCGTTTCAGTTTAATTAAGG 58.863 36.000 24.21 5.07 0.00 2.69
89 90 5.678132 ACGCGTTTCAGTTTAATTAAGGT 57.322 34.783 5.58 0.00 0.00 3.50
91 92 7.188468 ACGCGTTTCAGTTTAATTAAGGTAA 57.812 32.000 5.58 0.00 0.00 2.85
92 93 7.293018 ACGCGTTTCAGTTTAATTAAGGTAAG 58.707 34.615 5.58 0.00 0.00 2.34
161 162 2.672961 TAGATGGTGAACGCTCCTTG 57.327 50.000 0.00 0.00 0.00 3.61
163 164 1.648467 GATGGTGAACGCTCCTTGGC 61.648 60.000 0.00 0.00 0.00 4.52
186 187 5.363517 CGGATAGCATTTACGAACGATTTC 58.636 41.667 0.14 0.00 0.00 2.17
187 188 5.611844 CGGATAGCATTTACGAACGATTTCC 60.612 44.000 0.14 0.00 0.00 3.13
189 190 6.073222 GGATAGCATTTACGAACGATTTCCAT 60.073 38.462 0.14 0.00 0.00 3.41
191 192 4.035017 GCATTTACGAACGATTTCCATGG 58.965 43.478 4.97 4.97 0.00 3.66
193 194 2.388310 TACGAACGATTTCCATGGCA 57.612 45.000 6.96 0.00 0.00 4.92
194 195 1.529226 ACGAACGATTTCCATGGCAA 58.471 45.000 6.96 2.04 0.00 4.52
195 196 2.091541 ACGAACGATTTCCATGGCAAT 58.908 42.857 9.56 9.56 0.00 3.56
196 197 2.491693 ACGAACGATTTCCATGGCAATT 59.508 40.909 11.12 0.00 0.00 2.32
198 199 3.925913 CGAACGATTTCCATGGCAATTTT 59.074 39.130 11.12 7.68 0.00 1.82
199 200 5.098893 CGAACGATTTCCATGGCAATTTTA 58.901 37.500 11.12 0.00 0.00 1.52
200 201 5.004345 CGAACGATTTCCATGGCAATTTTAC 59.996 40.000 11.12 3.81 0.00 2.01
201 202 5.659440 ACGATTTCCATGGCAATTTTACT 57.341 34.783 11.12 0.00 0.00 2.24
203 204 5.868801 ACGATTTCCATGGCAATTTTACTTG 59.131 36.000 11.12 0.00 0.00 3.16
204 205 6.098679 CGATTTCCATGGCAATTTTACTTGA 58.901 36.000 11.12 0.00 0.00 3.02
205 206 6.254157 CGATTTCCATGGCAATTTTACTTGAG 59.746 38.462 11.12 0.00 0.00 3.02
207 208 4.671831 TCCATGGCAATTTTACTTGAGGA 58.328 39.130 6.96 0.00 0.00 3.71
208 209 4.706476 TCCATGGCAATTTTACTTGAGGAG 59.294 41.667 6.96 0.00 0.00 3.69
210 211 4.380843 TGGCAATTTTACTTGAGGAGGA 57.619 40.909 0.00 0.00 0.00 3.71
219 220 0.465097 CTTGAGGAGGATGGCGCAAT 60.465 55.000 10.83 1.77 0.00 3.56
220 221 0.034186 TTGAGGAGGATGGCGCAATT 60.034 50.000 10.83 0.00 0.00 2.32
221 222 0.464373 TGAGGAGGATGGCGCAATTC 60.464 55.000 10.83 0.67 0.00 2.17
224 225 0.753111 GGAGGATGGCGCAATTCCTT 60.753 55.000 21.40 9.33 39.98 3.36
228 229 0.810648 GATGGCGCAATTCCTTCACA 59.189 50.000 10.83 0.00 0.00 3.58
229 230 0.813184 ATGGCGCAATTCCTTCACAG 59.187 50.000 10.83 0.00 0.00 3.66
231 232 1.508088 GCGCAATTCCTTCACAGGG 59.492 57.895 0.30 0.00 41.25 4.45
232 233 0.960364 GCGCAATTCCTTCACAGGGA 60.960 55.000 0.30 0.00 41.25 4.20
233 234 1.533625 CGCAATTCCTTCACAGGGAA 58.466 50.000 0.00 0.00 45.40 3.97
279 280 9.528018 AAATGTTGTCGTTTGATCTAAAAACAT 57.472 25.926 11.83 11.83 37.48 2.71
280 281 9.528018 AATGTTGTCGTTTGATCTAAAAACATT 57.472 25.926 17.89 17.89 39.15 2.71
281 282 8.918961 TGTTGTCGTTTGATCTAAAAACATTT 57.081 26.923 7.63 0.00 37.37 2.32
282 283 8.802856 TGTTGTCGTTTGATCTAAAAACATTTG 58.197 29.630 7.63 0.00 37.37 2.32
283 284 8.803799 GTTGTCGTTTGATCTAAAAACATTTGT 58.196 29.630 7.63 0.00 37.37 2.83
298 299 8.587952 AAAACATTTGTAAGTTAGCATTGTCC 57.412 30.769 0.00 0.00 0.00 4.02
299 300 5.938322 ACATTTGTAAGTTAGCATTGTCCG 58.062 37.500 0.00 0.00 0.00 4.79
300 301 5.472137 ACATTTGTAAGTTAGCATTGTCCGT 59.528 36.000 0.00 0.00 0.00 4.69
302 303 4.260139 TGTAAGTTAGCATTGTCCGTGA 57.740 40.909 0.00 0.00 0.00 4.35
303 304 4.633175 TGTAAGTTAGCATTGTCCGTGAA 58.367 39.130 0.00 0.00 0.00 3.18
304 305 4.449743 TGTAAGTTAGCATTGTCCGTGAAC 59.550 41.667 0.00 0.00 0.00 3.18
305 306 2.423577 AGTTAGCATTGTCCGTGAACC 58.576 47.619 0.00 0.00 0.00 3.62
306 307 2.147958 GTTAGCATTGTCCGTGAACCA 58.852 47.619 0.00 0.00 0.00 3.67
307 308 2.550606 GTTAGCATTGTCCGTGAACCAA 59.449 45.455 0.00 0.00 0.00 3.67
310 311 1.604604 CATTGTCCGTGAACCAACCT 58.395 50.000 0.00 0.00 0.00 3.50
311 312 1.266718 CATTGTCCGTGAACCAACCTG 59.733 52.381 0.00 0.00 0.00 4.00
312 313 0.253610 TTGTCCGTGAACCAACCTGT 59.746 50.000 0.00 0.00 0.00 4.00
326 327 2.879103 ACCTGTGGTTGGATGGTTAG 57.121 50.000 0.00 0.00 27.29 2.34
327 328 2.344592 ACCTGTGGTTGGATGGTTAGA 58.655 47.619 0.00 0.00 27.29 2.10
328 329 2.305927 ACCTGTGGTTGGATGGTTAGAG 59.694 50.000 0.00 0.00 27.29 2.43
329 330 2.571653 CCTGTGGTTGGATGGTTAGAGA 59.428 50.000 0.00 0.00 0.00 3.10
330 331 3.369892 CCTGTGGTTGGATGGTTAGAGAG 60.370 52.174 0.00 0.00 0.00 3.20
332 333 1.559682 TGGTTGGATGGTTAGAGAGGC 59.440 52.381 0.00 0.00 0.00 4.70
333 334 1.559682 GGTTGGATGGTTAGAGAGGCA 59.440 52.381 0.00 0.00 0.00 4.75
334 335 2.420687 GGTTGGATGGTTAGAGAGGCAG 60.421 54.545 0.00 0.00 0.00 4.85
335 336 2.237392 GTTGGATGGTTAGAGAGGCAGT 59.763 50.000 0.00 0.00 0.00 4.40
336 337 1.833630 TGGATGGTTAGAGAGGCAGTG 59.166 52.381 0.00 0.00 0.00 3.66
337 338 1.139853 GGATGGTTAGAGAGGCAGTGG 59.860 57.143 0.00 0.00 0.00 4.00
340 341 3.116096 TGGTTAGAGAGGCAGTGGTAT 57.884 47.619 0.00 0.00 0.00 2.73
341 342 3.031736 TGGTTAGAGAGGCAGTGGTATC 58.968 50.000 0.00 0.00 0.00 2.24
342 343 2.365941 GGTTAGAGAGGCAGTGGTATCC 59.634 54.545 0.00 0.00 0.00 2.59
344 345 0.339859 AGAGAGGCAGTGGTATCCCA 59.660 55.000 0.00 0.00 38.87 4.37
346 347 1.139853 GAGAGGCAGTGGTATCCCAAG 59.860 57.143 0.00 0.00 44.15 3.61
347 348 0.464554 GAGGCAGTGGTATCCCAAGC 60.465 60.000 0.00 0.00 44.15 4.01
348 349 4.242602 GCAGTGGTATCCCAAGCC 57.757 61.111 0.00 0.00 44.15 4.35
349 350 1.453928 GCAGTGGTATCCCAAGCCC 60.454 63.158 0.00 0.00 44.15 5.19
350 351 1.998530 CAGTGGTATCCCAAGCCCA 59.001 57.895 0.00 0.00 44.15 5.36
351 352 0.394352 CAGTGGTATCCCAAGCCCAC 60.394 60.000 0.00 0.00 44.15 4.61
352 353 1.076995 GTGGTATCCCAAGCCCACC 60.077 63.158 0.00 0.00 44.15 4.61
353 354 1.542628 TGGTATCCCAAGCCCACCA 60.543 57.895 0.00 0.00 37.98 4.17
355 356 0.395724 GGTATCCCAAGCCCACCAAG 60.396 60.000 0.00 0.00 0.00 3.61
356 357 0.395724 GTATCCCAAGCCCACCAAGG 60.396 60.000 0.00 0.00 37.03 3.61
357 358 0.849094 TATCCCAAGCCCACCAAGGT 60.849 55.000 0.00 0.00 34.66 3.50
358 359 1.739608 ATCCCAAGCCCACCAAGGTT 61.740 55.000 0.00 0.00 34.66 3.50
359 360 1.908299 CCCAAGCCCACCAAGGTTC 60.908 63.158 0.00 0.00 34.66 3.62
360 361 1.152567 CCAAGCCCACCAAGGTTCA 60.153 57.895 0.00 0.00 34.66 3.18
361 362 0.758685 CCAAGCCCACCAAGGTTCAA 60.759 55.000 0.00 0.00 34.66 2.69
363 364 1.693606 CAAGCCCACCAAGGTTCAAAT 59.306 47.619 0.00 0.00 34.66 2.32
365 366 1.970640 AGCCCACCAAGGTTCAAATTC 59.029 47.619 0.00 0.00 34.66 2.17
367 368 2.289010 GCCCACCAAGGTTCAAATTCTG 60.289 50.000 0.00 0.00 34.66 3.02
369 370 2.965147 CCACCAAGGTTCAAATTCTGGT 59.035 45.455 0.00 0.00 0.00 4.00
370 371 3.243839 CCACCAAGGTTCAAATTCTGGTG 60.244 47.826 11.27 11.27 43.52 4.17
371 372 2.365293 ACCAAGGTTCAAATTCTGGTGC 59.635 45.455 0.00 0.00 0.00 5.01
373 374 3.070015 CCAAGGTTCAAATTCTGGTGCTT 59.930 43.478 0.00 0.00 0.00 3.91
374 375 4.053295 CAAGGTTCAAATTCTGGTGCTTG 58.947 43.478 0.00 0.00 0.00 4.01
375 376 3.565307 AGGTTCAAATTCTGGTGCTTGA 58.435 40.909 0.00 0.00 0.00 3.02
376 377 3.960102 AGGTTCAAATTCTGGTGCTTGAA 59.040 39.130 0.00 0.00 35.88 2.69
378 379 5.070847 AGGTTCAAATTCTGGTGCTTGAATT 59.929 36.000 0.00 0.00 42.52 2.17
382 383 8.650714 GTTCAAATTCTGGTGCTTGAATTATTC 58.349 33.333 0.00 0.00 40.64 1.75
383 384 7.322664 TCAAATTCTGGTGCTTGAATTATTCC 58.677 34.615 2.22 0.00 40.64 3.01
385 386 8.469200 CAAATTCTGGTGCTTGAATTATTCCTA 58.531 33.333 2.22 0.00 40.64 2.94
386 387 8.593945 AATTCTGGTGCTTGAATTATTCCTAA 57.406 30.769 2.22 0.00 40.00 2.69
387 388 8.593945 ATTCTGGTGCTTGAATTATTCCTAAA 57.406 30.769 2.22 0.00 29.63 1.85
388 389 8.593945 TTCTGGTGCTTGAATTATTCCTAAAT 57.406 30.769 2.22 0.00 0.00 1.40
389 390 8.593945 TCTGGTGCTTGAATTATTCCTAAATT 57.406 30.769 2.22 0.00 0.00 1.82
390 391 9.034800 TCTGGTGCTTGAATTATTCCTAAATTT 57.965 29.630 2.22 0.00 0.00 1.82
406 407 8.232913 TCCTAAATTTATTTCAGGATTTCCGG 57.767 34.615 0.00 0.00 42.08 5.14
407 408 6.923508 CCTAAATTTATTTCAGGATTTCCGGC 59.076 38.462 0.00 0.00 42.08 6.13
408 409 4.568152 ATTTATTTCAGGATTTCCGGCG 57.432 40.909 0.00 0.00 42.08 6.46
409 410 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
410 411 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
411 412 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
412 413 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
413 414 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
415 416 2.469516 GGATTTCCGGCGATGCGTT 61.470 57.895 9.30 0.00 0.00 4.84
420 421 1.906994 TTCCGGCGATGCGTTTTCAG 61.907 55.000 9.30 0.00 0.00 3.02
421 422 2.677003 CCGGCGATGCGTTTTCAGT 61.677 57.895 9.30 0.00 0.00 3.41
422 423 1.509787 CGGCGATGCGTTTTCAGTG 60.510 57.895 0.00 0.00 0.00 3.66
423 424 1.866237 GGCGATGCGTTTTCAGTGA 59.134 52.632 0.00 0.00 0.00 3.41
424 425 0.179215 GGCGATGCGTTTTCAGTGAG 60.179 55.000 0.00 0.00 0.00 3.51
425 426 0.790207 GCGATGCGTTTTCAGTGAGA 59.210 50.000 0.00 0.00 0.00 3.27
426 427 1.201855 GCGATGCGTTTTCAGTGAGAG 60.202 52.381 0.00 0.00 0.00 3.20
427 428 1.391485 CGATGCGTTTTCAGTGAGAGG 59.609 52.381 0.00 0.00 0.00 3.69
429 430 2.154854 TGCGTTTTCAGTGAGAGGAG 57.845 50.000 0.00 0.00 0.00 3.69
430 431 1.686587 TGCGTTTTCAGTGAGAGGAGA 59.313 47.619 0.00 0.00 0.00 3.71
431 432 2.062519 GCGTTTTCAGTGAGAGGAGAC 58.937 52.381 0.00 0.00 0.00 3.36
432 433 2.320367 CGTTTTCAGTGAGAGGAGACG 58.680 52.381 0.00 0.00 0.00 4.18
435 436 3.644884 TTTCAGTGAGAGGAGACGTTC 57.355 47.619 0.00 0.00 0.00 3.95
458 459 2.353607 GACGACGAGGCGCCTATG 60.354 66.667 32.97 27.02 33.86 2.23
459 460 3.825833 GACGACGAGGCGCCTATGG 62.826 68.421 32.97 23.64 33.86 2.74
474 475 4.065088 GCCTATGGCGACTTCATAAATCA 58.935 43.478 0.00 0.00 39.62 2.57
476 477 5.056480 CCTATGGCGACTTCATAAATCACA 58.944 41.667 0.00 0.00 0.00 3.58
477 478 5.527214 CCTATGGCGACTTCATAAATCACAA 59.473 40.000 0.00 0.00 0.00 3.33
478 479 4.944962 TGGCGACTTCATAAATCACAAG 57.055 40.909 0.00 0.00 0.00 3.16
479 480 4.574892 TGGCGACTTCATAAATCACAAGA 58.425 39.130 0.00 0.00 0.00 3.02
481 482 5.065090 TGGCGACTTCATAAATCACAAGATG 59.935 40.000 0.00 0.00 33.90 2.90
482 483 5.294306 GGCGACTTCATAAATCACAAGATGA 59.706 40.000 0.00 0.00 43.13 2.92
491 492 2.549064 TCACAAGATGATATGCCGGG 57.451 50.000 2.18 0.00 29.99 5.73
493 494 2.146342 CACAAGATGATATGCCGGGTC 58.854 52.381 2.18 0.00 0.00 4.46
494 495 1.768275 ACAAGATGATATGCCGGGTCA 59.232 47.619 2.18 0.00 0.00 4.02
495 496 2.224378 ACAAGATGATATGCCGGGTCAG 60.224 50.000 2.18 0.00 0.00 3.51
496 497 1.722034 AGATGATATGCCGGGTCAGT 58.278 50.000 2.18 0.00 0.00 3.41
497 498 1.620819 AGATGATATGCCGGGTCAGTC 59.379 52.381 2.18 0.00 0.00 3.51
498 499 1.620819 GATGATATGCCGGGTCAGTCT 59.379 52.381 2.18 0.00 0.00 3.24
499 500 1.496060 TGATATGCCGGGTCAGTCTT 58.504 50.000 2.18 0.00 0.00 3.01
500 501 1.837439 TGATATGCCGGGTCAGTCTTT 59.163 47.619 2.18 0.00 0.00 2.52
502 503 0.174845 TATGCCGGGTCAGTCTTTCG 59.825 55.000 2.18 0.00 0.00 3.46
504 505 1.005394 GCCGGGTCAGTCTTTCGAA 60.005 57.895 2.18 0.00 0.00 3.71
506 507 0.389948 CCGGGTCAGTCTTTCGAAGG 60.390 60.000 0.00 0.00 0.00 3.46
507 508 0.317479 CGGGTCAGTCTTTCGAAGGT 59.683 55.000 7.20 0.00 0.00 3.50
508 509 1.542915 CGGGTCAGTCTTTCGAAGGTA 59.457 52.381 7.20 0.00 0.00 3.08
509 510 2.670509 CGGGTCAGTCTTTCGAAGGTAC 60.671 54.545 7.20 4.73 0.00 3.34
511 512 3.367190 GGGTCAGTCTTTCGAAGGTACTC 60.367 52.174 7.20 0.00 38.49 2.59
512 513 3.255149 GGTCAGTCTTTCGAAGGTACTCA 59.745 47.826 7.20 0.00 38.49 3.41
513 514 4.082136 GGTCAGTCTTTCGAAGGTACTCAT 60.082 45.833 7.20 0.00 38.49 2.90
514 515 5.125097 GGTCAGTCTTTCGAAGGTACTCATA 59.875 44.000 7.20 0.00 38.49 2.15
516 517 5.357314 TCAGTCTTTCGAAGGTACTCATAGG 59.643 44.000 7.20 0.00 38.49 2.57
517 518 4.645588 AGTCTTTCGAAGGTACTCATAGGG 59.354 45.833 7.20 0.00 38.49 3.53
518 519 3.958798 TCTTTCGAAGGTACTCATAGGGG 59.041 47.826 7.20 0.00 38.49 4.79
519 520 1.700955 TCGAAGGTACTCATAGGGGC 58.299 55.000 0.00 0.00 38.49 5.80
520 521 1.063492 TCGAAGGTACTCATAGGGGCA 60.063 52.381 0.00 0.00 38.49 5.36
521 522 1.341531 CGAAGGTACTCATAGGGGCAG 59.658 57.143 0.00 0.00 38.49 4.85
522 523 1.694696 GAAGGTACTCATAGGGGCAGG 59.305 57.143 0.00 0.00 38.49 4.85
524 525 0.400093 GGTACTCATAGGGGCAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
525 526 0.759346 GTACTCATAGGGGCAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
526 527 0.639943 TACTCATAGGGGCAGGGTGA 59.360 55.000 0.00 0.00 0.00 4.02
527 528 0.692419 ACTCATAGGGGCAGGGTGAG 60.692 60.000 7.39 7.39 41.47 3.51
529 530 3.164269 ATAGGGGCAGGGTGAGCG 61.164 66.667 0.00 0.00 0.00 5.03
530 531 4.715130 TAGGGGCAGGGTGAGCGT 62.715 66.667 0.00 0.00 0.00 5.07
531 532 2.599139 ATAGGGGCAGGGTGAGCGTA 62.599 60.000 0.00 0.00 0.00 4.42
532 533 2.599139 TAGGGGCAGGGTGAGCGTAT 62.599 60.000 0.00 0.00 0.00 3.06
533 534 2.203070 GGGCAGGGTGAGCGTATG 60.203 66.667 0.00 0.00 0.00 2.39
555 556 3.424430 GCGTATGTATGAGCGATTGTG 57.576 47.619 0.00 0.00 0.00 3.33
556 557 2.794910 GCGTATGTATGAGCGATTGTGT 59.205 45.455 0.00 0.00 0.00 3.72
557 558 3.121328 GCGTATGTATGAGCGATTGTGTC 60.121 47.826 0.00 0.00 0.00 3.67
558 559 4.290969 CGTATGTATGAGCGATTGTGTCT 58.709 43.478 0.00 0.00 0.00 3.41
559 560 4.380087 CGTATGTATGAGCGATTGTGTCTC 59.620 45.833 0.00 0.00 0.00 3.36
561 562 5.774498 ATGTATGAGCGATTGTGTCTCTA 57.226 39.130 0.00 0.00 0.00 2.43
562 563 4.921547 TGTATGAGCGATTGTGTCTCTAC 58.078 43.478 0.00 0.00 0.00 2.59
563 564 4.640647 TGTATGAGCGATTGTGTCTCTACT 59.359 41.667 0.00 0.00 0.00 2.57
564 565 3.766676 TGAGCGATTGTGTCTCTACTC 57.233 47.619 0.00 0.00 0.00 2.59
565 566 3.081804 TGAGCGATTGTGTCTCTACTCA 58.918 45.455 0.00 0.00 0.00 3.41
566 567 3.696548 TGAGCGATTGTGTCTCTACTCAT 59.303 43.478 0.00 0.00 0.00 2.90
567 568 4.039151 AGCGATTGTGTCTCTACTCATG 57.961 45.455 0.00 0.00 0.00 3.07
568 569 3.445450 AGCGATTGTGTCTCTACTCATGT 59.555 43.478 0.00 0.00 0.00 3.21
569 570 4.081972 AGCGATTGTGTCTCTACTCATGTT 60.082 41.667 0.00 0.00 0.00 2.71
572 573 5.863935 CGATTGTGTCTCTACTCATGTTCAA 59.136 40.000 0.00 0.00 0.00 2.69
573 574 6.366061 CGATTGTGTCTCTACTCATGTTCAAA 59.634 38.462 0.00 0.00 0.00 2.69
575 576 7.482654 TTGTGTCTCTACTCATGTTCAAAAG 57.517 36.000 0.00 0.00 0.00 2.27
577 578 7.047891 TGTGTCTCTACTCATGTTCAAAAGTT 58.952 34.615 0.00 0.00 0.00 2.66
578 579 8.201464 TGTGTCTCTACTCATGTTCAAAAGTTA 58.799 33.333 0.00 0.00 0.00 2.24
579 580 8.704234 GTGTCTCTACTCATGTTCAAAAGTTAG 58.296 37.037 0.00 0.00 0.00 2.34
580 581 7.385205 TGTCTCTACTCATGTTCAAAAGTTAGC 59.615 37.037 0.00 0.00 0.00 3.09
581 582 7.385205 GTCTCTACTCATGTTCAAAAGTTAGCA 59.615 37.037 0.00 0.00 0.00 3.49
582 583 8.097038 TCTCTACTCATGTTCAAAAGTTAGCAT 58.903 33.333 0.00 0.00 0.00 3.79
583 584 8.621532 TCTACTCATGTTCAAAAGTTAGCATT 57.378 30.769 0.00 0.00 0.00 3.56
584 585 8.506437 TCTACTCATGTTCAAAAGTTAGCATTG 58.494 33.333 0.00 0.00 0.00 2.82
585 586 7.042797 ACTCATGTTCAAAAGTTAGCATTGT 57.957 32.000 0.00 0.00 0.00 2.71
586 587 7.141363 ACTCATGTTCAAAAGTTAGCATTGTC 58.859 34.615 0.00 0.00 0.00 3.18
587 588 6.446318 TCATGTTCAAAAGTTAGCATTGTCC 58.554 36.000 0.00 0.00 0.00 4.02
589 590 4.892934 TGTTCAAAAGTTAGCATTGTCCCT 59.107 37.500 0.00 0.00 0.00 4.20
591 592 6.547880 TGTTCAAAAGTTAGCATTGTCCCTAA 59.452 34.615 0.00 0.00 0.00 2.69
592 593 7.068839 TGTTCAAAAGTTAGCATTGTCCCTAAA 59.931 33.333 0.00 0.00 0.00 1.85
594 595 8.189119 TCAAAAGTTAGCATTGTCCCTAAATT 57.811 30.769 0.00 0.00 34.48 1.82
595 596 9.303116 TCAAAAGTTAGCATTGTCCCTAAATTA 57.697 29.630 0.00 0.00 32.62 1.40
1840 4686 2.545526 CACCAATCGATGAGCATACCAC 59.454 50.000 0.00 0.00 0.00 4.16
1973 4839 5.514204 GCAACAAAAGATTGGATCTGATTCG 59.486 40.000 0.00 0.00 41.01 3.34
1989 4855 1.484227 TTCGGCGTATTTCGGATGCG 61.484 55.000 6.85 0.00 40.26 4.73
1995 4861 1.837747 CGTATTTCGGATGCGCAAAAC 59.162 47.619 17.11 9.26 35.71 2.43
2077 4994 2.734755 TGCTTGGGGGTCATTATCAG 57.265 50.000 0.00 0.00 0.00 2.90
2085 5002 3.073062 GGGGGTCATTATCAGCACATACT 59.927 47.826 0.00 0.00 0.00 2.12
2088 5005 4.752101 GGGTCATTATCAGCACATACTGTC 59.248 45.833 0.00 0.00 38.84 3.51
2089 5006 5.359756 GGTCATTATCAGCACATACTGTCA 58.640 41.667 0.00 0.00 38.84 3.58
2090 5007 5.464722 GGTCATTATCAGCACATACTGTCAG 59.535 44.000 0.00 0.00 38.84 3.51
2141 5066 7.530426 AGTGTGAATTCCTATTGCTTTCTTT 57.470 32.000 2.27 0.00 0.00 2.52
2175 5100 1.517257 GATGACAGAGACGGCACCG 60.517 63.158 7.71 7.71 46.03 4.94
2313 5242 3.973657 TCAGGTTCTCACTTGACGTAAC 58.026 45.455 0.00 0.00 34.20 2.50
2341 5270 3.788227 ACTCTGATTTGGTGTTGGCTA 57.212 42.857 0.00 0.00 0.00 3.93
2363 5292 7.014230 GGCTATTTGGCATATCTTGTTTTCCTA 59.986 37.037 0.00 0.00 41.37 2.94
2471 5538 7.872113 ATTTCCTTACTCTGATTTGGTCATC 57.128 36.000 0.00 0.00 35.97 2.92
2511 5578 4.752604 TGTTTTTCTCATCGTCCATTTCGA 59.247 37.500 0.00 0.00 41.45 3.71
2518 5585 2.672961 TCGTCCATTTCGATGAGCTT 57.327 45.000 0.00 0.00 32.30 3.74
2579 5651 3.056749 GGTATCAGGTTCTCACTTGACGT 60.057 47.826 0.00 0.00 41.51 4.34
2580 5652 4.157289 GGTATCAGGTTCTCACTTGACGTA 59.843 45.833 0.00 0.00 41.51 3.57
2581 5653 4.866508 ATCAGGTTCTCACTTGACGTAA 57.133 40.909 0.00 0.00 41.51 3.18
2582 5654 4.866508 TCAGGTTCTCACTTGACGTAAT 57.133 40.909 0.00 0.00 34.20 1.89
2583 5655 5.209818 TCAGGTTCTCACTTGACGTAATT 57.790 39.130 0.00 0.00 34.20 1.40
2617 5690 6.114187 ACTCTGATTTGGTCATGACTGTTA 57.886 37.500 24.50 9.01 35.97 2.41
2620 5693 5.013079 TCTGATTTGGTCATGACTGTTAGGT 59.987 40.000 24.50 5.69 35.97 3.08
2628 5701 5.812642 GGTCATGACTGTTAGGTGTATCTTG 59.187 44.000 24.50 0.00 0.00 3.02
2662 5737 4.671508 CGTCCATTTCGATAAGCTGCAAAA 60.672 41.667 1.02 0.00 0.00 2.44
2669 5744 9.669353 CATTTCGATAAGCTGCAAAAGTAATAT 57.331 29.630 1.02 0.00 0.00 1.28
2674 5749 2.358898 AGCTGCAAAAGTAATATGCCGG 59.641 45.455 1.02 0.00 39.31 6.13
2683 5758 2.104792 AGTAATATGCCGGTCATGTGCT 59.895 45.455 18.08 12.56 36.63 4.40
2767 5872 3.643320 AGAGTGTTCAGTGTGATGAGGAA 59.357 43.478 0.00 0.00 0.00 3.36
2782 5887 6.320672 GTGATGAGGAATGAATTCTTGGATGT 59.679 38.462 7.05 0.00 37.00 3.06
2783 5888 6.320418 TGATGAGGAATGAATTCTTGGATGTG 59.680 38.462 7.05 0.00 37.00 3.21
2789 5894 4.535526 TGAATTCTTGGATGTGTCGAGA 57.464 40.909 7.05 0.00 0.00 4.04
2810 5915 6.039941 CGAGATCGGATAGGGCTATTAAAGAT 59.960 42.308 0.00 0.00 35.37 2.40
2828 5933 3.056080 AGATGAAAATGCCCCTAGCCTA 58.944 45.455 0.00 0.00 42.71 3.93
2963 6068 4.929808 AGGTTTCTGAATATCGTGTGTGAC 59.070 41.667 0.00 0.00 0.00 3.67
3011 6116 2.310538 CCAAACCAGAAGGCTGACTTT 58.689 47.619 0.00 0.00 45.17 2.66
3088 6193 7.502120 AATTACTAGCAATCCAACTAGCATG 57.498 36.000 0.00 0.00 39.63 4.06
3092 6197 6.414732 ACTAGCAATCCAACTAGCATGTTTA 58.585 36.000 0.00 0.00 39.63 2.01
3099 6204 8.407832 CAATCCAACTAGCATGTTTATTCATCA 58.592 33.333 0.00 0.00 0.00 3.07
3128 6239 9.565090 TTAATTTACAGCTCCTAGTCGTCTATA 57.435 33.333 0.00 0.00 0.00 1.31
3129 6240 8.638629 AATTTACAGCTCCTAGTCGTCTATAT 57.361 34.615 0.00 0.00 0.00 0.86
3130 6241 7.670009 TTTACAGCTCCTAGTCGTCTATATC 57.330 40.000 0.00 0.00 0.00 1.63
3131 6242 5.492855 ACAGCTCCTAGTCGTCTATATCT 57.507 43.478 0.00 0.00 0.00 1.98
3148 6259 5.762179 ATATCTTCCACAACTGAACAGGA 57.238 39.130 6.76 0.00 0.00 3.86
3173 6284 9.658799 GATTAGGATAGACATTTATGCTTAGCA 57.341 33.333 10.09 10.09 44.86 3.49
3477 6590 9.216117 TGTTAATTTTCTAACCTAAGAGTCAGC 57.784 33.333 0.00 0.00 31.85 4.26
3478 6591 8.666573 GTTAATTTTCTAACCTAAGAGTCAGCC 58.333 37.037 0.00 0.00 0.00 4.85
3479 6592 5.818678 TTTTCTAACCTAAGAGTCAGCCA 57.181 39.130 0.00 0.00 0.00 4.75
3480 6593 6.374417 TTTTCTAACCTAAGAGTCAGCCAT 57.626 37.500 0.00 0.00 0.00 4.40
3481 6594 6.374417 TTTCTAACCTAAGAGTCAGCCATT 57.626 37.500 0.00 0.00 0.00 3.16
3483 6596 5.978814 TCTAACCTAAGAGTCAGCCATTTC 58.021 41.667 0.00 0.00 0.00 2.17
3487 6603 4.287067 ACCTAAGAGTCAGCCATTTCTGAA 59.713 41.667 0.00 0.00 43.89 3.02
3499 6615 5.104360 AGCCATTTCTGAAAGGTGATAGCTA 60.104 40.000 13.03 0.00 0.00 3.32
3580 6696 9.481340 TGATAAGTATCTGCATGTCAAATACTC 57.519 33.333 13.15 5.91 33.24 2.59
3581 6697 8.839310 ATAAGTATCTGCATGTCAAATACTCC 57.161 34.615 13.15 0.00 33.24 3.85
3582 6698 5.615289 AGTATCTGCATGTCAAATACTCCC 58.385 41.667 9.13 0.00 29.39 4.30
3583 6699 4.785346 ATCTGCATGTCAAATACTCCCT 57.215 40.909 0.00 0.00 0.00 4.20
3584 6700 4.142609 TCTGCATGTCAAATACTCCCTC 57.857 45.455 0.00 0.00 0.00 4.30
3585 6701 3.118261 TCTGCATGTCAAATACTCCCTCC 60.118 47.826 0.00 0.00 0.00 4.30
3586 6702 2.213499 GCATGTCAAATACTCCCTCCG 58.787 52.381 0.00 0.00 0.00 4.63
3587 6703 2.420129 GCATGTCAAATACTCCCTCCGT 60.420 50.000 0.00 0.00 0.00 4.69
3588 6704 3.458189 CATGTCAAATACTCCCTCCGTC 58.542 50.000 0.00 0.00 0.00 4.79
3589 6705 2.816411 TGTCAAATACTCCCTCCGTCT 58.184 47.619 0.00 0.00 0.00 4.18
3590 6706 2.758979 TGTCAAATACTCCCTCCGTCTC 59.241 50.000 0.00 0.00 0.00 3.36
3591 6707 2.758979 GTCAAATACTCCCTCCGTCTCA 59.241 50.000 0.00 0.00 0.00 3.27
3592 6708 3.385111 GTCAAATACTCCCTCCGTCTCAT 59.615 47.826 0.00 0.00 0.00 2.90
3593 6709 4.583489 GTCAAATACTCCCTCCGTCTCATA 59.417 45.833 0.00 0.00 0.00 2.15
3594 6710 5.068723 GTCAAATACTCCCTCCGTCTCATAA 59.931 44.000 0.00 0.00 0.00 1.90
3595 6711 5.839063 TCAAATACTCCCTCCGTCTCATAAT 59.161 40.000 0.00 0.00 0.00 1.28
3596 6712 5.730296 AATACTCCCTCCGTCTCATAATG 57.270 43.478 0.00 0.00 0.00 1.90
3597 6713 3.033659 ACTCCCTCCGTCTCATAATGT 57.966 47.619 0.00 0.00 0.00 2.71
3598 6714 4.180377 ACTCCCTCCGTCTCATAATGTA 57.820 45.455 0.00 0.00 0.00 2.29
3599 6715 4.543689 ACTCCCTCCGTCTCATAATGTAA 58.456 43.478 0.00 0.00 0.00 2.41
3600 6716 4.585162 ACTCCCTCCGTCTCATAATGTAAG 59.415 45.833 0.00 0.00 0.00 2.34
3601 6717 4.800023 TCCCTCCGTCTCATAATGTAAGA 58.200 43.478 0.00 0.00 0.00 2.10
3602 6718 4.583489 TCCCTCCGTCTCATAATGTAAGAC 59.417 45.833 0.00 0.00 36.82 3.01
3656 6772 3.990369 TCCTATATTATGGGACGGAGGG 58.010 50.000 4.74 0.00 34.71 4.30
3657 6773 3.599240 TCCTATATTATGGGACGGAGGGA 59.401 47.826 4.74 0.00 34.71 4.20
3658 6774 3.961408 CCTATATTATGGGACGGAGGGAG 59.039 52.174 0.00 0.00 31.57 4.30
3659 6775 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
3660 6776 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
3661 6777 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
3662 6778 0.179009 TATGGGACGGAGGGAGTACG 60.179 60.000 0.00 0.00 0.00 3.67
3663 6779 2.044551 GGGACGGAGGGAGTACGT 60.045 66.667 0.00 0.00 44.35 3.57
3664 6780 1.224592 GGGACGGAGGGAGTACGTA 59.775 63.158 0.00 0.00 41.40 3.57
3665 6781 1.098129 GGGACGGAGGGAGTACGTAC 61.098 65.000 18.10 18.10 41.40 3.67
3684 6800 5.092781 CGTACCAATTTAAAGCGCTTTGAT 58.907 37.500 38.60 28.96 34.23 2.57
3819 6936 2.224621 CCAGGGTAGTAGATTGGGCATG 60.225 54.545 0.00 0.00 0.00 4.06
3991 7108 3.334583 AGAAGCTCGCAATGGTTTCTA 57.665 42.857 0.00 0.00 32.73 2.10
4002 7119 5.123186 CGCAATGGTTTCTAATCCTAACACA 59.877 40.000 0.00 0.00 0.00 3.72
4024 7141 2.479566 TGAAGGCCAAGATGACACTC 57.520 50.000 5.01 0.00 0.00 3.51
4501 7634 1.507140 TCCGGAACATCAGGGCTATT 58.493 50.000 0.00 0.00 32.32 1.73
4864 7997 1.689273 GGCAGTGGTAGATCAGTAGGG 59.311 57.143 0.00 0.00 0.00 3.53
5018 8151 0.465705 GGCTGATGGGATCGAGACAA 59.534 55.000 0.00 0.00 0.00 3.18
5056 8189 0.315886 CATGCTGCAGCTCACCAAAA 59.684 50.000 36.61 16.61 42.66 2.44
5187 8432 5.696822 TGCTATACATTCCGATCTAACGAC 58.303 41.667 0.00 0.00 35.09 4.34
5203 8448 0.034059 CGACTGCTCTGGTGACCTTT 59.966 55.000 2.11 0.00 0.00 3.11
5204 8449 1.802069 GACTGCTCTGGTGACCTTTC 58.198 55.000 2.11 0.00 0.00 2.62
5302 8547 6.882656 TGAGGATCTAACTGATGAAGAAAGG 58.117 40.000 0.00 0.00 35.14 3.11
5325 8570 4.082463 GGATGCTCATGAGGTAGCTACTAC 60.082 50.000 23.89 16.47 39.53 2.73
5326 8571 4.171878 TGCTCATGAGGTAGCTACTACT 57.828 45.455 23.89 12.67 39.53 2.57
5327 8572 4.138290 TGCTCATGAGGTAGCTACTACTC 58.862 47.826 23.89 20.16 39.53 2.59
5337 8582 9.109246 TGAGGTAGCTACTACTCCTATGTTATA 57.891 37.037 22.74 1.38 37.16 0.98
5350 8595 7.502561 ACTCCTATGTTATACAGCAATTTTCCC 59.497 37.037 0.00 0.00 0.00 3.97
5380 8631 5.873179 TTTACTTGTATTGTGGTAGCAGC 57.127 39.130 0.00 0.00 0.00 5.25
5413 8664 3.817647 CAGTTGCTGCTTCCTAAAACTCT 59.182 43.478 0.00 0.00 0.00 3.24
5415 8666 4.276926 AGTTGCTGCTTCCTAAAACTCTTG 59.723 41.667 0.00 0.00 0.00 3.02
5431 8682 3.828451 ACTCTTGCAAATACATTGTGCCT 59.172 39.130 0.00 0.00 41.32 4.75
5437 8688 6.142818 TGCAAATACATTGTGCCTTATACC 57.857 37.500 0.00 0.00 41.32 2.73
5449 8700 3.222603 GCCTTATACCAACCAGGAATGG 58.777 50.000 12.84 12.84 41.22 3.16
5457 8823 1.962807 CAACCAGGAATGGCAGTTGAA 59.037 47.619 8.81 0.00 40.12 2.69
5506 8907 1.909700 TCTGCACCAACCATTTCCTC 58.090 50.000 0.00 0.00 0.00 3.71
5682 9095 0.183014 AGCATCCTTGGAGCAGATGG 59.817 55.000 11.55 0.00 38.25 3.51
5836 9270 0.532862 CACGGTTCACTGTCAGCCTT 60.533 55.000 0.00 0.00 32.07 4.35
5838 9272 0.249868 CGGTTCACTGTCAGCCTTCA 60.250 55.000 0.00 0.00 0.00 3.02
5839 9273 1.517242 GGTTCACTGTCAGCCTTCAG 58.483 55.000 0.00 0.00 37.65 3.02
5841 9275 0.250467 TTCACTGTCAGCCTTCAGCC 60.250 55.000 0.00 0.00 45.47 4.85
6037 9495 6.676237 TTTGCGCAAGAATATATTCTGTCA 57.324 33.333 25.16 17.40 45.83 3.58
6132 9815 8.746922 TGCTTTGAACAACAATTCATCTAATC 57.253 30.769 0.00 0.00 38.37 1.75
6168 9851 7.995289 TCAGTTATGAGTTGTGACACAAATTT 58.005 30.769 22.16 14.61 40.15 1.82
6204 9887 3.418047 GGCAACTGGGTGTAGTTAACAT 58.582 45.455 8.61 0.00 41.10 2.71
6205 9888 3.824443 GGCAACTGGGTGTAGTTAACATT 59.176 43.478 8.61 0.00 41.10 2.71
6206 9889 5.005094 GGCAACTGGGTGTAGTTAACATTA 58.995 41.667 8.61 0.00 41.10 1.90
6207 9890 5.474189 GGCAACTGGGTGTAGTTAACATTAA 59.526 40.000 8.61 0.00 41.10 1.40
6208 9891 6.349033 GGCAACTGGGTGTAGTTAACATTAAG 60.349 42.308 8.61 0.00 41.10 1.85
6209 9892 6.206048 GCAACTGGGTGTAGTTAACATTAAGT 59.794 38.462 8.61 0.00 41.10 2.24
6210 9893 7.255346 GCAACTGGGTGTAGTTAACATTAAGTT 60.255 37.037 8.61 5.49 41.10 2.66
6211 9894 7.739498 ACTGGGTGTAGTTAACATTAAGTTG 57.261 36.000 8.61 0.00 41.10 3.16
6212 9895 6.206048 ACTGGGTGTAGTTAACATTAAGTTGC 59.794 38.462 8.61 0.00 41.10 4.17
6213 9896 5.474189 TGGGTGTAGTTAACATTAAGTTGCC 59.526 40.000 8.61 0.00 41.10 4.52
6215 9898 6.128090 GGGTGTAGTTAACATTAAGTTGCCTC 60.128 42.308 8.61 0.00 41.10 4.70
6217 9900 7.295930 GTGTAGTTAACATTAAGTTGCCTCAC 58.704 38.462 8.61 0.00 41.10 3.51
6218 9901 7.172703 GTGTAGTTAACATTAAGTTGCCTCACT 59.827 37.037 8.61 0.00 41.10 3.41
6220 9903 9.379791 GTAGTTAACATTAAGTTGCCTCACTAT 57.620 33.333 8.61 0.00 41.50 2.12
6221 9904 8.494016 AGTTAACATTAAGTTGCCTCACTATC 57.506 34.615 8.61 0.00 41.50 2.08
6224 9907 6.054860 ACATTAAGTTGCCTCACTATCTGT 57.945 37.500 0.00 0.00 0.00 3.41
6250 10074 2.412770 GCAACAAATTCAGCCAATTCCG 59.587 45.455 0.00 0.00 33.16 4.30
6274 10098 3.802139 TCTTTCAACGGCTATTATGAGCG 59.198 43.478 0.00 0.00 43.83 5.03
6306 10130 9.911788 ATGTTCCTGTGATGAAACTAAGAATAT 57.088 29.630 0.00 0.00 0.00 1.28
6307 10131 9.739276 TGTTCCTGTGATGAAACTAAGAATATT 57.261 29.630 0.00 0.00 0.00 1.28
6333 10157 8.853077 AGTCAAATAATGTGAACTCTCAATGA 57.147 30.769 0.00 0.00 31.88 2.57
6373 10197 9.681062 ATCGTTATGAGGAAATAAGAGGAAAAA 57.319 29.630 0.00 0.00 0.00 1.94
6416 10240 7.663493 AGACAGCTTGAAAGAGTAAAATTAGCT 59.337 33.333 0.00 0.00 36.94 3.32
6420 10244 6.803807 GCTTGAAAGAGTAAAATTAGCTGGTG 59.196 38.462 0.00 0.00 0.00 4.17
6421 10245 6.817765 TGAAAGAGTAAAATTAGCTGGTGG 57.182 37.500 0.00 0.00 0.00 4.61
6422 10246 6.539173 TGAAAGAGTAAAATTAGCTGGTGGA 58.461 36.000 0.00 0.00 0.00 4.02
6423 10247 6.655003 TGAAAGAGTAAAATTAGCTGGTGGAG 59.345 38.462 0.00 0.00 0.00 3.86
6424 10248 6.374417 AAGAGTAAAATTAGCTGGTGGAGA 57.626 37.500 0.00 0.00 0.00 3.71
6425 10249 6.567602 AGAGTAAAATTAGCTGGTGGAGAT 57.432 37.500 0.00 0.00 0.00 2.75
6426 10250 7.676683 AGAGTAAAATTAGCTGGTGGAGATA 57.323 36.000 0.00 0.00 0.00 1.98
6427 10251 8.268878 AGAGTAAAATTAGCTGGTGGAGATAT 57.731 34.615 0.00 0.00 0.00 1.63
6428 10252 8.371699 AGAGTAAAATTAGCTGGTGGAGATATC 58.628 37.037 0.00 0.00 0.00 1.63
6430 10254 8.494433 AGTAAAATTAGCTGGTGGAGATATCAA 58.506 33.333 5.32 0.00 0.00 2.57
6433 10257 5.692115 TTAGCTGGTGGAGATATCAAACA 57.308 39.130 5.32 0.00 0.00 2.83
6434 10258 3.878778 AGCTGGTGGAGATATCAAACAC 58.121 45.455 5.32 10.16 0.00 3.32
6439 10263 2.936498 GTGGAGATATCAAACACCACGG 59.064 50.000 5.32 0.00 37.81 4.94
6463 10287 7.429340 CGGAAAAAGATGGAAAAAGATACATCG 59.571 37.037 0.00 0.00 43.29 3.84
6514 10889 0.614812 TACTTCCAGAGCTGCATGCA 59.385 50.000 21.29 21.29 45.94 3.96
6529 10904 4.263435 TGCATGCAGACATTTCATAGACA 58.737 39.130 18.46 0.00 32.87 3.41
6530 10905 4.334481 TGCATGCAGACATTTCATAGACAG 59.666 41.667 18.46 0.00 32.87 3.51
6588 10964 4.096833 TGCATTCATTTCATAGACAGGCAC 59.903 41.667 0.00 0.00 0.00 5.01
6598 10974 6.484364 TCATAGACAGGCACTCATTTGATA 57.516 37.500 0.00 0.00 34.60 2.15
6611 10987 7.678218 GCACTCATTTGATATCTGTGAAACCTC 60.678 40.741 3.98 0.00 34.36 3.85
6619 10995 7.331026 TGATATCTGTGAAACCTCCTTTACAG 58.669 38.462 3.98 0.00 37.47 2.74
6666 11042 8.519526 TGCGAAACATCAGTAAAATAGGAAATT 58.480 29.630 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 7.166142 CCTTAATTAAACTGAAACGCGTTGAAA 59.834 33.333 27.34 13.04 0.00 2.69
68 69 7.293018 ACTTACCTTAATTAAACTGAAACGCG 58.707 34.615 3.53 3.53 0.00 6.01
161 162 1.191647 CGTTCGTAAATGCTATCCGCC 59.808 52.381 0.00 0.00 38.05 6.13
163 164 4.966850 AATCGTTCGTAAATGCTATCCG 57.033 40.909 0.00 0.00 0.00 4.18
164 165 5.235616 TGGAAATCGTTCGTAAATGCTATCC 59.764 40.000 0.00 0.00 34.28 2.59
179 180 5.659440 AGTAAAATTGCCATGGAAATCGT 57.341 34.783 18.87 11.64 0.00 3.73
183 184 5.541868 TCCTCAAGTAAAATTGCCATGGAAA 59.458 36.000 18.40 13.14 0.00 3.13
186 187 4.142093 CCTCCTCAAGTAAAATTGCCATGG 60.142 45.833 7.63 7.63 0.00 3.66
187 188 4.706476 TCCTCCTCAAGTAAAATTGCCATG 59.294 41.667 0.00 0.00 0.00 3.66
189 190 4.380843 TCCTCCTCAAGTAAAATTGCCA 57.619 40.909 0.00 0.00 0.00 4.92
191 192 4.440663 GCCATCCTCCTCAAGTAAAATTGC 60.441 45.833 0.00 0.00 0.00 3.56
193 194 3.947834 CGCCATCCTCCTCAAGTAAAATT 59.052 43.478 0.00 0.00 0.00 1.82
194 195 3.545703 CGCCATCCTCCTCAAGTAAAAT 58.454 45.455 0.00 0.00 0.00 1.82
195 196 2.939640 GCGCCATCCTCCTCAAGTAAAA 60.940 50.000 0.00 0.00 0.00 1.52
196 197 1.406887 GCGCCATCCTCCTCAAGTAAA 60.407 52.381 0.00 0.00 0.00 2.01
198 199 0.975556 TGCGCCATCCTCCTCAAGTA 60.976 55.000 4.18 0.00 0.00 2.24
199 200 1.841302 TTGCGCCATCCTCCTCAAGT 61.841 55.000 4.18 0.00 0.00 3.16
200 201 0.465097 ATTGCGCCATCCTCCTCAAG 60.465 55.000 4.18 0.00 0.00 3.02
201 202 0.034186 AATTGCGCCATCCTCCTCAA 60.034 50.000 4.18 0.00 0.00 3.02
203 204 1.169034 GGAATTGCGCCATCCTCCTC 61.169 60.000 4.18 0.00 0.00 3.71
204 205 1.152881 GGAATTGCGCCATCCTCCT 60.153 57.895 4.18 0.00 0.00 3.69
205 206 0.753111 AAGGAATTGCGCCATCCTCC 60.753 55.000 21.48 13.54 42.72 4.30
207 208 0.034186 TGAAGGAATTGCGCCATCCT 60.034 50.000 17.18 17.18 45.43 3.24
208 209 0.101219 GTGAAGGAATTGCGCCATCC 59.899 55.000 4.18 10.20 0.00 3.51
210 211 0.813184 CTGTGAAGGAATTGCGCCAT 59.187 50.000 4.18 0.00 0.00 4.40
253 254 8.918961 TGTTTTTAGATCAAACGACAACATTT 57.081 26.923 0.00 0.00 37.00 2.32
254 255 9.528018 AATGTTTTTAGATCAAACGACAACATT 57.472 25.926 15.82 15.82 38.16 2.71
255 256 9.528018 AAATGTTTTTAGATCAAACGACAACAT 57.472 25.926 0.00 4.57 36.26 2.71
272 273 9.040939 GGACAATGCTAACTTACAAATGTTTTT 57.959 29.630 0.00 0.00 0.00 1.94
273 274 7.381139 CGGACAATGCTAACTTACAAATGTTTT 59.619 33.333 0.00 0.00 0.00 2.43
274 275 6.861055 CGGACAATGCTAACTTACAAATGTTT 59.139 34.615 0.00 0.00 0.00 2.83
275 276 6.016610 ACGGACAATGCTAACTTACAAATGTT 60.017 34.615 0.00 0.00 0.00 2.71
277 278 5.794945 CACGGACAATGCTAACTTACAAATG 59.205 40.000 0.00 0.00 0.00 2.32
279 280 5.057819 TCACGGACAATGCTAACTTACAAA 58.942 37.500 0.00 0.00 0.00 2.83
280 281 4.633175 TCACGGACAATGCTAACTTACAA 58.367 39.130 0.00 0.00 0.00 2.41
281 282 4.260139 TCACGGACAATGCTAACTTACA 57.740 40.909 0.00 0.00 0.00 2.41
282 283 4.142966 GGTTCACGGACAATGCTAACTTAC 60.143 45.833 0.00 0.00 0.00 2.34
283 284 3.998341 GGTTCACGGACAATGCTAACTTA 59.002 43.478 0.00 0.00 0.00 2.24
285 286 2.224426 TGGTTCACGGACAATGCTAACT 60.224 45.455 0.00 0.00 0.00 2.24
286 287 2.147958 TGGTTCACGGACAATGCTAAC 58.852 47.619 0.00 0.00 0.00 2.34
287 288 2.550606 GTTGGTTCACGGACAATGCTAA 59.449 45.455 0.00 0.00 0.00 3.09
290 291 0.039527 GGTTGGTTCACGGACAATGC 60.040 55.000 0.00 0.00 0.00 3.56
291 292 1.266718 CAGGTTGGTTCACGGACAATG 59.733 52.381 0.00 0.00 0.00 2.82
292 293 1.133915 ACAGGTTGGTTCACGGACAAT 60.134 47.619 0.00 0.00 0.00 2.71
293 294 0.253610 ACAGGTTGGTTCACGGACAA 59.746 50.000 0.00 0.00 0.00 3.18
295 296 1.164041 CCACAGGTTGGTTCACGGAC 61.164 60.000 0.00 0.00 41.10 4.79
296 297 1.147376 CCACAGGTTGGTTCACGGA 59.853 57.895 0.00 0.00 41.10 4.69
297 298 3.744559 CCACAGGTTGGTTCACGG 58.255 61.111 0.00 0.00 41.10 4.94
307 308 2.305927 CTCTAACCATCCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
310 311 2.571653 CCTCTCTAACCATCCAACCACA 59.428 50.000 0.00 0.00 0.00 4.17
311 312 2.681097 GCCTCTCTAACCATCCAACCAC 60.681 54.545 0.00 0.00 0.00 4.16
312 313 1.559682 GCCTCTCTAACCATCCAACCA 59.440 52.381 0.00 0.00 0.00 3.67
314 315 2.237392 ACTGCCTCTCTAACCATCCAAC 59.763 50.000 0.00 0.00 0.00 3.77
317 318 1.139853 CCACTGCCTCTCTAACCATCC 59.860 57.143 0.00 0.00 0.00 3.51
318 319 1.834263 ACCACTGCCTCTCTAACCATC 59.166 52.381 0.00 0.00 0.00 3.51
320 321 2.615986 TACCACTGCCTCTCTAACCA 57.384 50.000 0.00 0.00 0.00 3.67
322 323 3.737032 GGATACCACTGCCTCTCTAAC 57.263 52.381 0.00 0.00 0.00 2.34
337 338 0.395724 CCTTGGTGGGCTTGGGATAC 60.396 60.000 0.00 0.00 0.00 2.24
340 341 2.366153 GAACCTTGGTGGGCTTGGGA 62.366 60.000 0.00 0.00 41.11 4.37
341 342 1.908299 GAACCTTGGTGGGCTTGGG 60.908 63.158 0.00 0.00 41.11 4.12
342 343 0.758685 TTGAACCTTGGTGGGCTTGG 60.759 55.000 0.00 0.00 41.11 3.61
344 345 2.101640 ATTTGAACCTTGGTGGGCTT 57.898 45.000 0.00 0.00 41.11 4.35
346 347 1.970640 AGAATTTGAACCTTGGTGGGC 59.029 47.619 0.00 0.00 41.11 5.36
347 348 2.299867 CCAGAATTTGAACCTTGGTGGG 59.700 50.000 0.00 0.00 41.11 4.61
348 349 2.965147 ACCAGAATTTGAACCTTGGTGG 59.035 45.455 0.00 0.00 42.93 4.61
349 350 3.799917 GCACCAGAATTTGAACCTTGGTG 60.800 47.826 15.19 15.19 45.80 4.17
350 351 2.365293 GCACCAGAATTTGAACCTTGGT 59.635 45.455 0.00 0.00 0.00 3.67
351 352 2.629617 AGCACCAGAATTTGAACCTTGG 59.370 45.455 0.00 0.00 0.00 3.61
352 353 4.053295 CAAGCACCAGAATTTGAACCTTG 58.947 43.478 0.00 0.00 0.00 3.61
353 354 3.960102 TCAAGCACCAGAATTTGAACCTT 59.040 39.130 0.00 0.00 0.00 3.50
355 356 4.320608 TTCAAGCACCAGAATTTGAACC 57.679 40.909 0.00 0.00 35.34 3.62
356 357 8.538409 AATAATTCAAGCACCAGAATTTGAAC 57.462 30.769 5.81 0.00 40.50 3.18
357 358 7.818930 GGAATAATTCAAGCACCAGAATTTGAA 59.181 33.333 5.81 4.11 40.50 2.69
358 359 7.178983 AGGAATAATTCAAGCACCAGAATTTGA 59.821 33.333 5.81 0.00 40.50 2.69
359 360 7.325694 AGGAATAATTCAAGCACCAGAATTTG 58.674 34.615 5.81 0.00 40.50 2.32
360 361 7.486407 AGGAATAATTCAAGCACCAGAATTT 57.514 32.000 5.81 0.00 40.50 1.82
361 362 8.593945 TTAGGAATAATTCAAGCACCAGAATT 57.406 30.769 0.00 0.00 44.24 2.17
363 364 8.593945 ATTTAGGAATAATTCAAGCACCAGAA 57.406 30.769 0.00 0.00 0.00 3.02
382 383 6.923508 GCCGGAAATCCTGAAATAAATTTAGG 59.076 38.462 5.05 0.94 0.00 2.69
383 384 6.636850 CGCCGGAAATCCTGAAATAAATTTAG 59.363 38.462 5.05 0.00 0.00 1.85
385 386 5.126384 TCGCCGGAAATCCTGAAATAAATTT 59.874 36.000 5.05 0.00 0.00 1.82
386 387 4.642885 TCGCCGGAAATCCTGAAATAAATT 59.357 37.500 5.05 0.00 0.00 1.82
387 388 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
388 389 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
389 390 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
390 391 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
391 392 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
394 395 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
395 396 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
397 398 1.988834 AAACGCATCGCCGGAAATCC 61.989 55.000 5.05 0.00 0.00 3.01
398 399 0.179174 AAAACGCATCGCCGGAAATC 60.179 50.000 5.05 0.00 0.00 2.17
400 401 1.208103 GAAAACGCATCGCCGGAAA 59.792 52.632 5.05 0.00 0.00 3.13
401 402 1.906994 CTGAAAACGCATCGCCGGAA 61.907 55.000 5.05 0.00 0.00 4.30
402 403 2.357638 TGAAAACGCATCGCCGGA 60.358 55.556 5.05 0.00 0.00 5.14
403 404 2.098298 CTGAAAACGCATCGCCGG 59.902 61.111 0.00 0.00 0.00 6.13
404 405 1.509787 CACTGAAAACGCATCGCCG 60.510 57.895 0.00 0.00 0.00 6.46
405 406 0.179215 CTCACTGAAAACGCATCGCC 60.179 55.000 0.00 0.00 0.00 5.54
406 407 0.790207 TCTCACTGAAAACGCATCGC 59.210 50.000 0.00 0.00 0.00 4.58
407 408 1.391485 CCTCTCACTGAAAACGCATCG 59.609 52.381 0.00 0.00 0.00 3.84
408 409 2.670414 CTCCTCTCACTGAAAACGCATC 59.330 50.000 0.00 0.00 0.00 3.91
409 410 2.300152 TCTCCTCTCACTGAAAACGCAT 59.700 45.455 0.00 0.00 0.00 4.73
410 411 1.686587 TCTCCTCTCACTGAAAACGCA 59.313 47.619 0.00 0.00 0.00 5.24
411 412 2.062519 GTCTCCTCTCACTGAAAACGC 58.937 52.381 0.00 0.00 0.00 4.84
412 413 2.287668 ACGTCTCCTCTCACTGAAAACG 60.288 50.000 0.00 0.00 0.00 3.60
413 414 3.372660 ACGTCTCCTCTCACTGAAAAC 57.627 47.619 0.00 0.00 0.00 2.43
415 416 2.296471 GGAACGTCTCCTCTCACTGAAA 59.704 50.000 8.87 0.00 41.61 2.69
440 441 3.950254 ATAGGCGCCTCGTCGTCG 61.950 66.667 36.73 0.00 39.34 5.12
441 442 2.353607 CATAGGCGCCTCGTCGTC 60.354 66.667 36.73 0.00 36.23 4.20
452 453 4.065088 TGATTTATGAAGTCGCCATAGGC 58.935 43.478 0.00 0.00 46.75 3.93
453 454 5.056480 TGTGATTTATGAAGTCGCCATAGG 58.944 41.667 0.00 0.00 0.00 2.57
454 455 6.479990 TCTTGTGATTTATGAAGTCGCCATAG 59.520 38.462 0.00 0.00 0.00 2.23
455 456 6.345298 TCTTGTGATTTATGAAGTCGCCATA 58.655 36.000 0.00 0.00 0.00 2.74
456 457 5.185454 TCTTGTGATTTATGAAGTCGCCAT 58.815 37.500 0.00 0.00 0.00 4.40
458 459 5.294306 TCATCTTGTGATTTATGAAGTCGCC 59.706 40.000 0.00 0.00 0.00 5.54
459 460 6.349973 TCATCTTGTGATTTATGAAGTCGC 57.650 37.500 0.00 0.00 0.00 5.19
461 462 9.823098 GCATATCATCTTGTGATTTATGAAGTC 57.177 33.333 0.00 0.00 45.25 3.01
464 465 7.094677 CCGGCATATCATCTTGTGATTTATGAA 60.095 37.037 0.00 0.00 45.25 2.57
465 466 6.372381 CCGGCATATCATCTTGTGATTTATGA 59.628 38.462 0.00 0.00 45.25 2.15
467 468 5.649395 CCCGGCATATCATCTTGTGATTTAT 59.351 40.000 0.00 0.00 45.25 1.40
469 470 3.822735 CCCGGCATATCATCTTGTGATTT 59.177 43.478 0.00 0.00 45.25 2.17
470 471 3.181440 ACCCGGCATATCATCTTGTGATT 60.181 43.478 0.00 0.00 45.25 2.57
474 475 1.768275 TGACCCGGCATATCATCTTGT 59.232 47.619 0.00 0.00 0.00 3.16
476 477 2.037772 GACTGACCCGGCATATCATCTT 59.962 50.000 0.00 0.00 0.00 2.40
477 478 1.620819 GACTGACCCGGCATATCATCT 59.379 52.381 0.00 0.00 0.00 2.90
478 479 1.620819 AGACTGACCCGGCATATCATC 59.379 52.381 0.00 0.00 0.00 2.92
479 480 1.722034 AGACTGACCCGGCATATCAT 58.278 50.000 0.00 0.00 0.00 2.45
481 482 2.484889 GAAAGACTGACCCGGCATATC 58.515 52.381 0.00 0.00 0.00 1.63
482 483 1.202533 CGAAAGACTGACCCGGCATAT 60.203 52.381 0.00 0.00 0.00 1.78
484 485 1.079127 CGAAAGACTGACCCGGCAT 60.079 57.895 0.00 0.00 0.00 4.40
486 487 1.005394 TTCGAAAGACTGACCCGGC 60.005 57.895 0.00 0.00 41.84 6.13
487 488 0.389948 CCTTCGAAAGACTGACCCGG 60.390 60.000 0.00 0.00 41.84 5.73
488 489 0.317479 ACCTTCGAAAGACTGACCCG 59.683 55.000 0.00 0.00 41.84 5.28
489 490 2.561858 AGTACCTTCGAAAGACTGACCC 59.438 50.000 0.00 0.00 41.84 4.46
490 491 3.255149 TGAGTACCTTCGAAAGACTGACC 59.745 47.826 10.13 0.00 41.84 4.02
491 492 4.500603 TGAGTACCTTCGAAAGACTGAC 57.499 45.455 10.13 0.00 41.84 3.51
493 494 5.450688 CCCTATGAGTACCTTCGAAAGACTG 60.451 48.000 10.13 0.00 41.84 3.51
494 495 4.645588 CCCTATGAGTACCTTCGAAAGACT 59.354 45.833 0.00 3.44 41.84 3.24
495 496 4.202131 CCCCTATGAGTACCTTCGAAAGAC 60.202 50.000 0.00 0.00 41.84 3.01
496 497 3.958798 CCCCTATGAGTACCTTCGAAAGA 59.041 47.826 0.00 0.00 39.20 2.52
497 498 3.492829 GCCCCTATGAGTACCTTCGAAAG 60.493 52.174 0.00 0.00 0.00 2.62
498 499 2.433239 GCCCCTATGAGTACCTTCGAAA 59.567 50.000 0.00 0.00 0.00 3.46
499 500 2.037144 GCCCCTATGAGTACCTTCGAA 58.963 52.381 0.00 0.00 0.00 3.71
500 501 1.063492 TGCCCCTATGAGTACCTTCGA 60.063 52.381 0.00 0.00 0.00 3.71
502 503 1.694696 CCTGCCCCTATGAGTACCTTC 59.305 57.143 0.00 0.00 0.00 3.46
504 505 0.104934 CCCTGCCCCTATGAGTACCT 60.105 60.000 0.00 0.00 0.00 3.08
506 507 0.759346 CACCCTGCCCCTATGAGTAC 59.241 60.000 0.00 0.00 0.00 2.73
507 508 0.639943 TCACCCTGCCCCTATGAGTA 59.360 55.000 0.00 0.00 0.00 2.59
508 509 0.692419 CTCACCCTGCCCCTATGAGT 60.692 60.000 0.00 0.00 33.58 3.41
509 510 2.049627 GCTCACCCTGCCCCTATGAG 62.050 65.000 0.00 0.00 39.84 2.90
510 511 2.072487 GCTCACCCTGCCCCTATGA 61.072 63.158 0.00 0.00 0.00 2.15
511 512 2.512896 GCTCACCCTGCCCCTATG 59.487 66.667 0.00 0.00 0.00 2.23
512 513 2.599139 TACGCTCACCCTGCCCCTAT 62.599 60.000 0.00 0.00 0.00 2.57
513 514 2.599139 ATACGCTCACCCTGCCCCTA 62.599 60.000 0.00 0.00 0.00 3.53
514 515 4.715130 TACGCTCACCCTGCCCCT 62.715 66.667 0.00 0.00 0.00 4.79
516 517 2.203070 CATACGCTCACCCTGCCC 60.203 66.667 0.00 0.00 0.00 5.36
517 518 2.897350 GCATACGCTCACCCTGCC 60.897 66.667 0.00 0.00 34.30 4.85
518 519 3.264897 CGCATACGCTCACCCTGC 61.265 66.667 0.00 0.00 35.30 4.85
529 530 1.317611 CGCTCATACATACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
530 531 1.198178 TCGCTCATACATACGCGCATA 59.802 47.619 5.73 0.00 44.72 3.14
531 532 0.039527 TCGCTCATACATACGCGCAT 60.040 50.000 5.73 0.00 44.72 4.73
532 533 0.039527 ATCGCTCATACATACGCGCA 60.040 50.000 5.73 0.00 44.72 6.09
533 534 1.060713 AATCGCTCATACATACGCGC 58.939 50.000 5.73 0.00 44.72 6.86
535 536 2.794910 ACACAATCGCTCATACATACGC 59.205 45.455 0.00 0.00 0.00 4.42
537 538 5.524284 AGAGACACAATCGCTCATACATAC 58.476 41.667 0.00 0.00 30.48 2.39
539 540 4.662468 AGAGACACAATCGCTCATACAT 57.338 40.909 0.00 0.00 30.48 2.29
541 542 5.176407 AGTAGAGACACAATCGCTCATAC 57.824 43.478 0.00 0.00 38.57 2.39
542 543 4.881850 TGAGTAGAGACACAATCGCTCATA 59.118 41.667 0.00 0.00 38.57 2.15
543 544 3.696548 TGAGTAGAGACACAATCGCTCAT 59.303 43.478 0.00 0.00 38.57 2.90
545 546 3.766676 TGAGTAGAGACACAATCGCTC 57.233 47.619 0.00 0.00 38.57 5.03
546 547 3.445450 ACATGAGTAGAGACACAATCGCT 59.555 43.478 0.00 0.00 40.98 4.93
549 550 7.658179 TTTGAACATGAGTAGAGACACAATC 57.342 36.000 0.00 0.00 29.50 2.67
551 552 7.047891 ACTTTTGAACATGAGTAGAGACACAA 58.952 34.615 0.00 0.00 29.50 3.33
553 554 7.484035 AACTTTTGAACATGAGTAGAGACAC 57.516 36.000 0.00 0.00 0.00 3.67
555 556 7.385205 TGCTAACTTTTGAACATGAGTAGAGAC 59.615 37.037 0.00 0.00 0.00 3.36
556 557 7.441836 TGCTAACTTTTGAACATGAGTAGAGA 58.558 34.615 0.00 0.00 0.00 3.10
557 558 7.658179 TGCTAACTTTTGAACATGAGTAGAG 57.342 36.000 0.00 0.00 0.00 2.43
558 559 8.506437 CAATGCTAACTTTTGAACATGAGTAGA 58.494 33.333 0.00 0.00 0.00 2.59
559 560 8.292448 ACAATGCTAACTTTTGAACATGAGTAG 58.708 33.333 0.00 0.00 0.00 2.57
561 562 7.042797 ACAATGCTAACTTTTGAACATGAGT 57.957 32.000 0.00 0.00 0.00 3.41
562 563 6.583806 GGACAATGCTAACTTTTGAACATGAG 59.416 38.462 0.00 0.00 0.00 2.90
563 564 6.446318 GGACAATGCTAACTTTTGAACATGA 58.554 36.000 0.00 0.00 0.00 3.07
564 565 5.634859 GGGACAATGCTAACTTTTGAACATG 59.365 40.000 0.00 0.00 0.00 3.21
565 566 5.539955 AGGGACAATGCTAACTTTTGAACAT 59.460 36.000 0.00 0.00 0.00 2.71
566 567 4.892934 AGGGACAATGCTAACTTTTGAACA 59.107 37.500 0.00 0.00 0.00 3.18
567 568 5.453567 AGGGACAATGCTAACTTTTGAAC 57.546 39.130 0.00 0.00 0.00 3.18
568 569 7.589958 TTTAGGGACAATGCTAACTTTTGAA 57.410 32.000 0.00 0.00 0.00 2.69
569 570 7.775053 ATTTAGGGACAATGCTAACTTTTGA 57.225 32.000 0.00 0.00 0.00 2.69
605 606 9.515226 AAATAATAAAAGTGCTACTCCACAAGA 57.485 29.630 0.00 0.00 38.18 3.02
1888 4735 3.753797 GAGAGTTTCCTGTCCAATCCAAC 59.246 47.826 0.00 0.00 0.00 3.77
1973 4839 2.248431 GCGCATCCGAAATACGCC 59.752 61.111 0.30 0.00 43.58 5.68
1989 4855 2.190161 GAAAGGAACGGTGTGTTTTGC 58.810 47.619 0.00 0.00 42.09 3.68
1995 4861 0.310854 GCTTGGAAAGGAACGGTGTG 59.689 55.000 0.00 0.00 46.35 3.82
2127 5052 8.758715 GCATAATAAAGCAAAGAAAGCAATAGG 58.241 33.333 0.00 0.00 0.00 2.57
2133 5058 7.253422 TCAGAGCATAATAAAGCAAAGAAAGC 58.747 34.615 0.00 0.00 0.00 3.51
2141 5066 6.585416 TCTGTCATCAGAGCATAATAAAGCA 58.415 36.000 0.00 0.00 44.58 3.91
2169 5094 6.091437 GTCTATATCACTATAACACGGTGCC 58.909 44.000 8.30 0.00 0.00 5.01
2183 5109 5.872070 GGCAAAGCCTAGATGTCTATATCAC 59.128 44.000 0.00 0.00 46.69 3.06
2313 5242 6.293626 CCAACACCAAATCAGAGTACAGAAAG 60.294 42.308 0.00 0.00 0.00 2.62
2341 5270 8.137437 CGATTAGGAAAACAAGATATGCCAAAT 58.863 33.333 0.00 0.00 0.00 2.32
2471 5538 3.896648 AACAAGATACGCCAAACAGTG 57.103 42.857 0.00 0.00 0.00 3.66
2518 5585 3.876914 CCAAGATGCGTATTTGCTTAGGA 59.123 43.478 0.00 0.00 35.36 2.94
2531 5598 1.081892 CAGGTCAACTCCAAGATGCG 58.918 55.000 0.00 0.00 0.00 4.73
2617 5690 5.178797 CGATGAGGAAAACAAGATACACCT 58.821 41.667 0.00 0.00 0.00 4.00
2620 5693 5.175859 GGACGATGAGGAAAACAAGATACA 58.824 41.667 0.00 0.00 0.00 2.29
2628 5701 3.682858 TCGAAATGGACGATGAGGAAAAC 59.317 43.478 0.00 0.00 34.85 2.43
2662 5737 2.104792 AGCACATGACCGGCATATTACT 59.895 45.455 0.00 0.00 34.82 2.24
2669 5744 1.965930 GTTGAGCACATGACCGGCA 60.966 57.895 0.00 0.00 0.00 5.69
2767 5872 5.089970 TCTCGACACATCCAAGAATTCAT 57.910 39.130 8.44 0.00 0.00 2.57
2782 5887 0.110678 AGCCCTATCCGATCTCGACA 59.889 55.000 0.22 0.00 43.02 4.35
2783 5888 2.110901 TAGCCCTATCCGATCTCGAC 57.889 55.000 0.22 0.00 43.02 4.20
2789 5894 7.496346 TTCATCTTTAATAGCCCTATCCGAT 57.504 36.000 0.00 0.00 0.00 4.18
2810 5915 1.494721 CCTAGGCTAGGGGCATTTTCA 59.505 52.381 29.55 0.00 42.42 2.69
2828 5933 4.692930 GCATCTTCCCCAATGCCT 57.307 55.556 0.00 0.00 41.92 4.75
2963 6068 5.403246 ACATACTTGTAAGAAGAGAGTGCG 58.597 41.667 0.00 0.00 33.16 5.34
3011 6116 3.492102 AGTTACCTGCAAGCAAGAAGA 57.508 42.857 0.00 0.00 0.00 2.87
3069 6174 5.824904 AAACATGCTAGTTGGATTGCTAG 57.175 39.130 0.00 0.00 38.11 3.42
3099 6204 8.258708 AGACGACTAGGAGCTGTAAATTAAATT 58.741 33.333 0.00 0.00 0.00 1.82
3128 6239 4.647564 ATCCTGTTCAGTTGTGGAAGAT 57.352 40.909 0.00 0.00 0.00 2.40
3129 6240 4.437682 AATCCTGTTCAGTTGTGGAAGA 57.562 40.909 0.00 0.00 0.00 2.87
3130 6241 4.697352 CCTAATCCTGTTCAGTTGTGGAAG 59.303 45.833 0.00 0.00 0.00 3.46
3131 6242 4.349636 TCCTAATCCTGTTCAGTTGTGGAA 59.650 41.667 0.00 0.00 0.00 3.53
3173 6284 8.370182 AGGAATCATTTGACTTTAACAAAGCAT 58.630 29.630 0.00 0.00 42.27 3.79
3307 6420 4.558538 ATTAGCTGCCGTTGAATTCATC 57.441 40.909 9.40 7.73 0.00 2.92
3475 6588 3.950395 GCTATCACCTTTCAGAAATGGCT 59.050 43.478 0.00 0.00 33.90 4.75
3476 6589 3.950395 AGCTATCACCTTTCAGAAATGGC 59.050 43.478 0.00 0.00 33.90 4.40
3477 6590 7.814264 ATTAGCTATCACCTTTCAGAAATGG 57.186 36.000 0.00 3.28 36.11 3.16
3478 6591 9.553064 AGTATTAGCTATCACCTTTCAGAAATG 57.447 33.333 0.00 0.00 0.00 2.32
3499 6615 8.799367 TGTGTCACTGGCGTTATATATAGTATT 58.201 33.333 4.27 0.00 0.00 1.89
3510 6626 1.958579 ACTACTGTGTCACTGGCGTTA 59.041 47.619 13.69 0.00 0.00 3.18
3514 6630 1.873591 CCAAACTACTGTGTCACTGGC 59.126 52.381 13.69 0.00 0.00 4.85
3570 6686 2.758979 TGAGACGGAGGGAGTATTTGAC 59.241 50.000 0.00 0.00 0.00 3.18
3579 6695 4.583489 GTCTTACATTATGAGACGGAGGGA 59.417 45.833 0.00 0.00 34.53 4.20
3580 6696 4.872664 GTCTTACATTATGAGACGGAGGG 58.127 47.826 0.00 0.00 34.53 4.30
3634 6750 3.705072 CCCTCCGTCCCATAATATAGGAC 59.295 52.174 7.65 7.65 45.49 3.85
3635 6751 3.599240 TCCCTCCGTCCCATAATATAGGA 59.401 47.826 0.00 0.00 0.00 2.94
3636 6752 3.961408 CTCCCTCCGTCCCATAATATAGG 59.039 52.174 0.00 0.00 0.00 2.57
3637 6753 4.611367 ACTCCCTCCGTCCCATAATATAG 58.389 47.826 0.00 0.00 0.00 1.31
3638 6754 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3639 6755 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3640 6756 3.771216 GTACTCCCTCCGTCCCATAATA 58.229 50.000 0.00 0.00 0.00 0.98
3641 6757 2.606378 GTACTCCCTCCGTCCCATAAT 58.394 52.381 0.00 0.00 0.00 1.28
3642 6758 1.751733 CGTACTCCCTCCGTCCCATAA 60.752 57.143 0.00 0.00 0.00 1.90
3643 6759 0.179009 CGTACTCCCTCCGTCCCATA 60.179 60.000 0.00 0.00 0.00 2.74
3644 6760 1.455217 CGTACTCCCTCCGTCCCAT 60.455 63.158 0.00 0.00 0.00 4.00
3645 6761 1.561769 TACGTACTCCCTCCGTCCCA 61.562 60.000 0.00 0.00 36.12 4.37
3646 6762 1.098129 GTACGTACTCCCTCCGTCCC 61.098 65.000 18.47 0.00 36.12 4.46
3647 6763 1.098129 GGTACGTACTCCCTCCGTCC 61.098 65.000 24.07 0.75 36.12 4.79
3648 6764 0.392998 TGGTACGTACTCCCTCCGTC 60.393 60.000 24.07 5.85 36.12 4.79
3649 6765 0.038166 TTGGTACGTACTCCCTCCGT 59.962 55.000 24.07 0.00 38.53 4.69
3650 6766 1.396653 ATTGGTACGTACTCCCTCCG 58.603 55.000 24.07 0.00 0.00 4.63
3651 6767 3.900966 AAATTGGTACGTACTCCCTCC 57.099 47.619 24.07 8.11 0.00 4.30
3652 6768 5.292834 GCTTTAAATTGGTACGTACTCCCTC 59.707 44.000 24.07 8.64 0.00 4.30
3653 6769 5.181009 GCTTTAAATTGGTACGTACTCCCT 58.819 41.667 24.07 8.91 0.00 4.20
3654 6770 4.033243 CGCTTTAAATTGGTACGTACTCCC 59.967 45.833 24.07 9.58 0.00 4.30
3655 6771 4.493057 GCGCTTTAAATTGGTACGTACTCC 60.493 45.833 24.07 10.32 0.00 3.85
3656 6772 4.328169 AGCGCTTTAAATTGGTACGTACTC 59.672 41.667 24.07 14.94 0.00 2.59
3657 6773 4.248058 AGCGCTTTAAATTGGTACGTACT 58.752 39.130 24.07 7.61 0.00 2.73
3658 6774 4.588805 AGCGCTTTAAATTGGTACGTAC 57.411 40.909 17.56 17.56 0.00 3.67
3659 6775 5.178996 TCAAAGCGCTTTAAATTGGTACGTA 59.821 36.000 33.20 3.47 0.00 3.57
3660 6776 4.023878 TCAAAGCGCTTTAAATTGGTACGT 60.024 37.500 33.20 5.65 0.00 3.57
3661 6777 4.468643 TCAAAGCGCTTTAAATTGGTACG 58.531 39.130 33.20 17.47 0.00 3.67
3662 6778 6.471198 GGTATCAAAGCGCTTTAAATTGGTAC 59.529 38.462 33.20 28.00 37.03 3.34
3663 6779 6.376018 AGGTATCAAAGCGCTTTAAATTGGTA 59.624 34.615 33.20 19.74 0.00 3.25
3664 6780 5.185056 AGGTATCAAAGCGCTTTAAATTGGT 59.815 36.000 33.20 20.78 0.00 3.67
3665 6781 5.650543 AGGTATCAAAGCGCTTTAAATTGG 58.349 37.500 33.20 20.25 0.00 3.16
3684 6800 2.438021 ACACAACAGAGCAGGAAAGGTA 59.562 45.455 0.00 0.00 0.00 3.08
3819 6936 3.637998 TCAGTAGAAACCACTGTCGTC 57.362 47.619 2.70 0.00 43.21 4.20
3991 7108 4.415596 TGGCCTTCATTTGTGTTAGGATT 58.584 39.130 3.32 0.00 0.00 3.01
4002 7119 3.760684 GAGTGTCATCTTGGCCTTCATTT 59.239 43.478 3.32 0.00 0.00 2.32
4024 7141 3.551890 CCGTGACGAGATTTAACATCTGG 59.448 47.826 6.54 6.53 0.00 3.86
4501 7634 2.039216 TCGGTTGCAAAGGTATTCCTGA 59.961 45.455 0.00 0.00 44.35 3.86
5018 8151 3.579534 TGAGGAGAAGTATCTACCGCT 57.420 47.619 0.00 0.00 37.20 5.52
5187 8432 1.338579 GGAGAAAGGTCACCAGAGCAG 60.339 57.143 0.00 0.00 44.60 4.24
5302 8547 2.896685 AGTAGCTACCTCATGAGCATCC 59.103 50.000 20.31 5.49 41.36 3.51
5325 8570 7.502226 TGGGAAAATTGCTGTATAACATAGGAG 59.498 37.037 0.00 0.00 0.00 3.69
5326 8571 7.350382 TGGGAAAATTGCTGTATAACATAGGA 58.650 34.615 0.00 0.00 0.00 2.94
5327 8572 7.285401 ACTGGGAAAATTGCTGTATAACATAGG 59.715 37.037 0.00 0.00 0.00 2.57
5350 8595 5.710099 ACCACAATACAAGTAAATCCCACTG 59.290 40.000 0.00 0.00 0.00 3.66
5380 8631 2.060326 CAGCAACTGCAATCAAGTGG 57.940 50.000 4.22 0.00 45.16 4.00
5408 8659 4.281688 AGGCACAATGTATTTGCAAGAGTT 59.718 37.500 0.00 0.00 39.03 3.01
5413 8664 6.153510 TGGTATAAGGCACAATGTATTTGCAA 59.846 34.615 0.00 0.00 39.03 4.08
5415 8666 6.142818 TGGTATAAGGCACAATGTATTTGC 57.857 37.500 0.00 0.00 39.03 3.68
5431 8682 3.268334 ACTGCCATTCCTGGTTGGTATAA 59.732 43.478 16.21 0.00 45.10 0.98
5437 8688 1.619654 TCAACTGCCATTCCTGGTTG 58.380 50.000 0.00 0.00 45.10 3.77
5449 8700 1.081840 GAGGCACGCTTTCAACTGC 60.082 57.895 0.00 0.00 0.00 4.40
5457 8823 1.336240 GCTTTGAAATGAGGCACGCTT 60.336 47.619 0.00 0.00 0.00 4.68
5506 8907 1.821332 GGAGCCCGCTTCAATCTGG 60.821 63.158 0.00 0.00 0.00 3.86
5649 9053 1.385631 ATGCTCTCCTCCATGGGCT 60.386 57.895 13.02 0.00 36.20 5.19
5659 9063 0.179051 CTGCTCCAAGGATGCTCTCC 60.179 60.000 10.43 0.00 45.33 3.71
5774 9187 2.045634 GGTTGGTCGGGTTAGGCC 60.046 66.667 0.00 0.00 36.18 5.19
5778 9191 2.225596 CCAGGGGTTGGTCGGGTTA 61.226 63.158 0.00 0.00 42.41 2.85
5779 9192 3.576259 CCAGGGGTTGGTCGGGTT 61.576 66.667 0.00 0.00 42.41 4.11
6037 9495 2.492484 GAGTATGTGTCCACCGACTTCT 59.508 50.000 0.00 0.00 39.94 2.85
6132 9815 9.764870 CACAACTCATAACTGATCTAAAATGTG 57.235 33.333 0.00 0.00 0.00 3.21
6168 9851 4.698304 CCAGTTGCCTCGGTTAGAAAAATA 59.302 41.667 0.00 0.00 0.00 1.40
6171 9854 2.500229 CCAGTTGCCTCGGTTAGAAAA 58.500 47.619 0.00 0.00 0.00 2.29
6208 9891 3.257393 CACTGACAGATAGTGAGGCAAC 58.743 50.000 10.08 0.00 46.52 4.17
6209 9892 2.354103 GCACTGACAGATAGTGAGGCAA 60.354 50.000 10.08 0.00 46.52 4.52
6210 9893 1.205655 GCACTGACAGATAGTGAGGCA 59.794 52.381 10.08 0.00 46.52 4.75
6211 9894 1.205655 TGCACTGACAGATAGTGAGGC 59.794 52.381 10.08 0.61 46.52 4.70
6212 9895 3.257393 GTTGCACTGACAGATAGTGAGG 58.743 50.000 10.08 0.00 46.52 3.86
6213 9896 3.917988 TGTTGCACTGACAGATAGTGAG 58.082 45.455 10.08 0.00 46.52 3.51
6215 9898 5.618056 ATTTGTTGCACTGACAGATAGTG 57.382 39.130 10.08 0.00 46.37 2.74
6217 9900 6.245115 TGAATTTGTTGCACTGACAGATAG 57.755 37.500 10.08 0.00 0.00 2.08
6218 9901 5.335113 GCTGAATTTGTTGCACTGACAGATA 60.335 40.000 10.08 0.00 0.00 1.98
6220 9903 3.243168 GCTGAATTTGTTGCACTGACAGA 60.243 43.478 10.08 0.00 0.00 3.41
6221 9904 3.047796 GCTGAATTTGTTGCACTGACAG 58.952 45.455 0.00 0.00 0.00 3.51
6224 9907 2.030371 TGGCTGAATTTGTTGCACTGA 58.970 42.857 0.00 0.00 0.00 3.41
6250 10074 4.319118 GCTCATAATAGCCGTTGAAAGAGC 60.319 45.833 0.00 0.00 38.09 4.09
6274 10098 3.921119 TCATCACAGGAACATTTGCAC 57.079 42.857 0.00 0.00 0.00 4.57
6307 10131 9.942850 TCATTGAGAGTTCACATTATTTGACTA 57.057 29.630 0.00 0.00 31.71 2.59
6373 10197 2.683362 TGTCTCTCGACTTGCGACATAT 59.317 45.455 0.00 0.00 45.59 1.78
6420 10244 3.536956 TCCGTGGTGTTTGATATCTCC 57.463 47.619 3.98 0.34 0.00 3.71
6421 10245 5.873179 TTTTCCGTGGTGTTTGATATCTC 57.127 39.130 3.98 0.00 0.00 2.75
6422 10246 6.001460 TCTTTTTCCGTGGTGTTTGATATCT 58.999 36.000 3.98 0.00 0.00 1.98
6423 10247 6.249035 TCTTTTTCCGTGGTGTTTGATATC 57.751 37.500 0.00 0.00 0.00 1.63
6424 10248 6.350110 CCATCTTTTTCCGTGGTGTTTGATAT 60.350 38.462 0.00 0.00 0.00 1.63
6425 10249 5.048364 CCATCTTTTTCCGTGGTGTTTGATA 60.048 40.000 0.00 0.00 0.00 2.15
6426 10250 4.261994 CCATCTTTTTCCGTGGTGTTTGAT 60.262 41.667 0.00 0.00 0.00 2.57
6427 10251 3.067461 CCATCTTTTTCCGTGGTGTTTGA 59.933 43.478 0.00 0.00 0.00 2.69
6428 10252 3.067461 TCCATCTTTTTCCGTGGTGTTTG 59.933 43.478 0.00 0.00 33.47 2.93
6430 10254 2.938838 TCCATCTTTTTCCGTGGTGTT 58.061 42.857 0.00 0.00 33.47 3.32
6433 10257 4.647399 TCTTTTTCCATCTTTTTCCGTGGT 59.353 37.500 0.00 0.00 33.47 4.16
6434 10258 5.195001 TCTTTTTCCATCTTTTTCCGTGG 57.805 39.130 0.00 0.00 0.00 4.94
6435 10259 7.367285 TGTATCTTTTTCCATCTTTTTCCGTG 58.633 34.615 0.00 0.00 0.00 4.94
6436 10260 7.519032 TGTATCTTTTTCCATCTTTTTCCGT 57.481 32.000 0.00 0.00 0.00 4.69
6437 10261 7.429340 CGATGTATCTTTTTCCATCTTTTTCCG 59.571 37.037 0.00 0.00 33.24 4.30
6438 10262 8.458843 TCGATGTATCTTTTTCCATCTTTTTCC 58.541 33.333 0.00 0.00 33.24 3.13
6439 10263 9.278734 GTCGATGTATCTTTTTCCATCTTTTTC 57.721 33.333 0.00 0.00 33.24 2.29
6463 10287 8.911662 GTTTTTATTATGTTGTCATGTGTGGTC 58.088 33.333 0.00 0.00 35.70 4.02
6507 10882 4.263435 TGTCTATGAAATGTCTGCATGCA 58.737 39.130 21.29 21.29 35.15 3.96
6588 10964 7.052873 AGGAGGTTTCACAGATATCAAATGAG 58.947 38.462 5.32 0.00 0.00 2.90
6598 10974 5.544176 TCTCTGTAAAGGAGGTTTCACAGAT 59.456 40.000 2.98 0.00 37.70 2.90
6611 10987 7.496529 TCAAATGTTTCAGTCTCTGTAAAGG 57.503 36.000 0.00 0.00 32.61 3.11
6619 10995 5.566774 CGCAGAAATCAAATGTTTCAGTCTC 59.433 40.000 0.00 0.00 37.89 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.